Query psy11187
Match_columns 115
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ooi_A Histone-lysine N-methyl 99.9 6.3E-23 2.1E-27 158.4 4.6 73 18-90 2-79 (232)
2 3ope_A Probable histone-lysine 99.3 2.1E-12 7.2E-17 98.6 3.6 54 35-90 2-60 (222)
3 3h6l_A Histone-lysine N-methyl 99.1 1.9E-11 6.4E-16 97.4 3.4 62 27-90 31-104 (278)
4 1mvh_A Cryptic LOCI regulator 96.5 0.00087 3E-08 53.4 1.9 59 31-90 39-124 (299)
5 1ml9_A Histone H3 methyltransf 92.1 0.055 1.9E-06 42.7 1.8 35 29-64 20-54 (302)
6 3hna_A Histone-lysine N-methyl 91.9 0.059 2E-06 42.6 1.7 57 31-90 54-134 (287)
7 2r3a_A Histone-lysine N-methyl 87.6 0.38 1.3E-05 38.2 3.3 53 33-90 56-127 (300)
8 3bo5_A Histone-lysine N-methyl 84.2 0.53 1.8E-05 37.1 2.5 34 30-63 32-65 (290)
9 1v87_A Deltex protein 2; ring- 50.5 6.4 0.00022 25.6 1.4 34 66-99 59-101 (114)
10 2kl7_A Fibulin-4; secreted, ca 29.9 5.8 0.0002 25.0 -1.3 27 62-88 6-33 (71)
11 2jry_A R11.6, I-superfamily co 24.0 23 0.00078 21.9 0.6 15 62-76 5-20 (46)
No 1
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=99.87 E-value=6.3e-23 Score=158.41 Aligned_cols=73 Identities=32% Similarity=0.688 Sum_probs=66.9
Q ss_pred hhhHHhHhhhcccCCCCCceeeeccccccccccc-CCCCCCCceec--CCCCCCCCCchhHHHhhhhhcC--CcCccc
Q psy11187 18 RDRIKTEETNERASRPSKYVKIKTNKPVGTVRLE-TDKSSTPVCEC--DESSPCGVGSSCINSSIGQSAE--SCIAIS 90 (115)
Q Consensus 18 Re~~~~~e~~~~~~KPP~YkkIKsNkpVg~vr~~-~D~sE~~~C~C--~d~~PCG~~S~CLNRmL~~EC~--~C~a~~ 90 (115)
||+++++|+.++.+|||+|+|||+|+++++++.+ .|++|+++|+| ++++|||.+++|||||+++||+ .|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~pp~y~~i~~n~~~~~~~~~~~~~~~~~~C~C~~~~~~~C~~~~~C~nr~~~~EC~~~~C~c~~ 79 (232)
T 3ooi_A 2 KELRQLQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGG 79 (232)
T ss_dssp HHHHHHHHHHHHCCSCCCCEECSSCEECTTCCCCCCCGGGSCCCSCCTTSSSTTCTTSCCHHHHTTBCCCTTTCTTGG
T ss_pred hhHHHHHHHHhcCCCCCCceEeeccccccccccccCCcccCCcccccCCCCCCCCCCCCCcCcCceeEeCCCCCCCCC
Confidence 5677888888999999999999999999999987 99999999999 7789999999999999999999 488764
No 2
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=98.60 Aligned_cols=54 Identities=24% Similarity=0.440 Sum_probs=45.2
Q ss_pred CceeeecccccccccccCCCCCCCceec---CCCCCCCCCchhHHHhhhhhcC--CcCccc
Q psy11187 35 KYVKIKTNKPVGTVRLETDKSSTPVCEC---DESSPCGVGSSCINSSIGQSAE--SCIAIS 90 (115)
Q Consensus 35 ~YkkIKsNkpVg~vr~~~D~sE~~~C~C---~d~~PCG~~S~CLNRmL~~EC~--~C~a~~ 90 (115)
.|+|||+|.|++... .+..|.+.|+| .++.+||++++|||||+++||+ .|+.+.
T Consensus 2 ~~~~i~~n~~~~~~~--~~~~~~~~C~C~~~~~~~~~~c~~~C~nr~~~~EC~~~~C~C~~ 60 (222)
T 3ope_A 2 SYKKIRSNVYVDVKP--LSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGE 60 (222)
T ss_dssp CCEECSSCEECSCCC--BCCCCCCCCCCCCCSCSSSCSSCSCCTTGGGTBCCCTTTCTTTT
T ss_pred CccCcccceeeeecc--CccccCccccCcCCCcCCCCCCcccCcCcCeEeEeCCCCCcCCC
Confidence 699999999999543 46678999999 2345788899999999999999 488765
No 3
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=99.13 E-value=1.9e-11 Score=97.36 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=42.6
Q ss_pred hcccCCCCCceeeeccccccccccc--CCCCCCCceecCC---------CCCCCCCchhHHHhhhhhcC-CcCccc
Q psy11187 27 NERASRPSKYVKIKTNKPVGTVRLE--TDKSSTPVCECDE---------SSPCGVGSSCINSSIGQSAE-SCIAIS 90 (115)
Q Consensus 27 ~~~~~KPP~YkkIKsNkpVg~vr~~--~D~sE~~~C~C~d---------~~PCG~~S~CLNRmL~~EC~-~C~a~~ 90 (115)
.++.+.||+|++|+.|.|+...+.. .+..|...|+|.. +.+|| .+||||++++||+ .|+.+.
T Consensus 31 ~~~~~~p~~~~~i~~n~y~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~~~~~C~--~~C~nr~~~~EC~~~C~C~~ 104 (278)
T 3h6l_A 31 AKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACG--EDCLNRLLMIECSSRCPNGD 104 (278)
T ss_dssp HHTTSSCCCCEECSSCEECC--------------CCCCCCCCHHHHHHTCCSSC--TTCTTGGGTBCCCTTCTTGG
T ss_pred HhcccCCCCceEeeeeeccccccccccccccccceeeccCCCcccccccCCCCC--CCCCCcceEeccCCCCCcCC
Confidence 4578899999999999999875443 3445678999932 35898 5799999999999 887654
No 4
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=96.51 E-value=0.00087 Score=53.39 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCC--ceeeecccccccccccCCCCCCCceecCCCCCCCC----CchhHHHh--------------------hhhhcC
Q psy11187 31 SRPSK--YVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGV----GSSCINSS--------------------IGQSAE 84 (115)
Q Consensus 31 ~KPP~--YkkIKsNkpVg~vr~~~D~sE~~~C~C~d~~PCG~----~S~CLNRm--------------------L~~EC~ 84 (115)
.+||+ |+.|..|++-..+. ..+.....-|+|.+...|++ .-.|++|+ +++||+
T Consensus 39 ~~~p~~~F~Yi~~~~~~~~~~-~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~ 117 (299)
T 1mvh_A 39 EPCPSLDFQFISQYRLTQGVI-PPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECN 117 (299)
T ss_dssp CCCSCCCSEECSSCEECTTCC-CCCGGGCCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCC
T ss_pred CCCCCCCcEEccceecCCCcC-cCCCcCCCCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCC
Confidence 45666 88888887755544 24444557799977678986 34688886 468999
Q ss_pred -CcCccc
Q psy11187 85 -SCIAIS 90 (115)
Q Consensus 85 -~C~a~~ 90 (115)
.|+.+.
T Consensus 118 ~~C~C~~ 124 (299)
T 1mvh_A 118 SFCSCSM 124 (299)
T ss_dssp TTSCSCT
T ss_pred CCCCCCC
Confidence 777654
No 5
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=92.11 E-value=0.055 Score=42.68 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=23.4
Q ss_pred ccCCCCCceeeecccccccccccCCCCCCCceecCC
Q psy11187 29 RASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDE 64 (115)
Q Consensus 29 ~~~KPP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~d 64 (115)
....||.|+.|+.|++-..|.. .+.+...-|+|.+
T Consensus 20 ~~~~P~~F~Yi~~~~~~~~~~~-~~~~~~~gC~C~~ 54 (302)
T 1ml9_A 20 DAFLNPNFRFIDHSIIGKNVPV-ADQSFRVGCSCAS 54 (302)
T ss_dssp SCCCCTTCEECSSCEECTTCCC-CCGGGCCCCCCSS
T ss_pred CCCCCCCCEEeeeeecCCCccc-cCcccCCCccCcC
Confidence 3456889999999998777654 3333345566643
No 6
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=91.87 E-value=0.059 Score=42.62 Aligned_cols=57 Identities=18% Similarity=0.453 Sum_probs=37.0
Q ss_pred CCCCCceeeecccccccccccCCCCCCCceecCCCCCCCCCchhH-----------------------HHhhhhhcC-Cc
Q psy11187 31 SRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGVGSSCI-----------------------NSSIGQSAE-SC 86 (115)
Q Consensus 31 ~KPP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~d~~PCG~~S~CL-----------------------NRmL~~EC~-~C 86 (115)
.-||.|+-|..|.+...+.+..+.....-|+|.+ .|+. +.|. ++.+++||+ .|
T Consensus 54 ~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~--~C~~-~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C 130 (287)
T 3hna_A 54 PCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID--DCSS-SNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHAC 130 (287)
T ss_dssp CCCCSSEECSSCEESSCCCCCCBGGGCCCCCCSS--SSCS-TTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTS
T ss_pred CCCCCcEEccccccCCCccccccCCCCCCCcCcC--CCCC-CCCcCcccCcccccCCCCcccccccccCCceEEecCCCC
Confidence 3477899999998877665433334456899953 2543 3332 346789999 77
Q ss_pred Cccc
Q psy11187 87 IAIS 90 (115)
Q Consensus 87 ~a~~ 90 (115)
..+.
T Consensus 131 ~C~~ 134 (287)
T 3hna_A 131 SCWR 134 (287)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 6654
No 7
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=87.64 E-value=0.38 Score=38.25 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCCceeeecccccccccccCCCCCCCceecCCCCCCCCCc----hhHHH--------------hhhhhcC-CcCccc
Q psy11187 33 PSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGVGS----SCINS--------------SIGQSAE-SCIAIS 90 (115)
Q Consensus 33 PP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~d~~PCG~~S----~CLNR--------------mL~~EC~-~C~a~~ 90 (115)
|+.|+.|+.|++...+.+. .....-|+|.+ |..+. .|.++ .+++||+ .|..+.
T Consensus 56 P~~f~yi~~~~~~~~~~~~--~~~~~gC~C~~---C~~~~cc~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~ 127 (300)
T 2r3a_A 56 PSDFYYINEYKPAPGISLV--NEATFGCSCTD---CFFQKCCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGP 127 (300)
T ss_dssp CSSCEECSSCEECTTCCCC-----CCCCCCSS---TTTSSCHHHHTTSCCSBCTTSCBCSCTTCCEECCCTTSSCCT
T ss_pred CCCEEECcccccCCCCccC--CCCCCCcCCcC---CCCCCcchhhccCccccccCCcEeccCCCcEEeCCCCCCCCC
Confidence 4479999999987776652 23456799953 43222 22232 3568999 777654
No 8
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=84.16 E-value=0.53 Score=37.10 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=20.9
Q ss_pred cCCCCCceeeecccccccccccCCCCCCCceecC
Q psy11187 30 ASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECD 63 (115)
Q Consensus 30 ~~KPP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~ 63 (115)
...||.|+.|..|.+-..+.+..+....+-|+|.
T Consensus 32 ~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~ 65 (290)
T 3bo5_A 32 GAAPAPFQYTPDHVVGPGADIDPTQITFPGCICV 65 (290)
T ss_dssp TCCCCCCEECSSCEECTTCSSCTTSCCCCCCCCC
T ss_pred CCCCCCcEEeeceecCCCCcCCcccccCCCCCCC
Confidence 4579999999998864444332122223568884
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=50.46 E-value=6.4 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCCC--CCchhHHHhhh-------hhcCCcCccceeEecCCCc
Q psy11187 66 SPCG--VGSSCINSSIG-------QSAESCIAISSIIINNSPS 99 (115)
Q Consensus 66 ~PCG--~~S~CLNRmL~-------~EC~~C~a~~~~~~~~~~~ 99 (115)
.||| .+..||.+.|. ..|..|++.-.....|.|.
T Consensus 59 ~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp SSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 4787 57799999983 3688888877666666665
No 10
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=29.89 E-value=5.8 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=21.7
Q ss_pred c-CCCCCCCCCchhHHHhhhhhcCCcCc
Q psy11187 62 C-DESSPCGVGSSCINSSIGQSAESCIA 88 (115)
Q Consensus 62 C-~d~~PCG~~S~CLNRmL~~EC~~C~a 88 (115)
| ...++|.....|+|..--|.|..|.+
T Consensus 6 C~~~~~~C~~~~~C~Nt~Gsy~C~~~~~ 33 (71)
T 2kl7_A 6 CLTIPEACKGEMKCINHYGGYLCLPRSA 33 (71)
T ss_dssp TTCCCCSCTTEEEEEETTCCEEEEETTS
T ss_pred ccCCCCCCCCCCEeECCCCCeEecccCC
Confidence 5 44578987788999999999996655
No 11
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=23.98 E-value=23 Score=21.86 Aligned_cols=15 Identities=33% Similarity=1.017 Sum_probs=13.6
Q ss_pred c-CCCCCCCCCchhHH
Q psy11187 62 C-DESSPCGVGSSCIN 76 (115)
Q Consensus 62 C-~d~~PCG~~S~CLN 76 (115)
| .|+.+|+-+++|-|
T Consensus 5 C~~~g~~C~~hsdCCg 20 (46)
T 2jry_A 5 CKADEKPCEYHADCCN 20 (46)
T ss_dssp CCCSSCCCSCSTTSSS
T ss_pred cccCCCccccccceec
Confidence 6 67999999999988
Done!