RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11187
(115 letters)
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET:
SAM; 1.75A {Homo sapiens}
Length = 232
Score = 47.4 bits (113), Expect = 9e-08
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 18 RDRIKTEETNERASRPSKYVKIKTNKPVGTVRLET-DKSSTPVCEC--DESSPCGVGSSC 74
++ + +E + +P Y IK N+P+G V++ T D S P C C + +PCG+ S C
Sbjct: 2 KELRQLQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATDENPCGIDSEC 61
Query: 75 IN 76
IN
Sbjct: 62 IN 63
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 36.7 bits (85), Expect = 6e-04
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 18 RDRIKTEETNERASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECD---------ESSPC 68
RD + +E ++ P + I+ N + + +C+
Sbjct: 22 RDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEI 81
Query: 69 GVGSSCIN 76
G C+N
Sbjct: 82 ACGEDCLN 89
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 34.2 bits (79), Expect = 0.004
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 36 YVKIKTNKPVGTVRLETDKSSTPVCEC---DESSPCGVGSSCIN 76
Y KI++N V L ++ C C D+ + G C+N
Sbjct: 3 YKKIRSNVYVDVKPLSGYEA--TTCNCKKPDDDTRKGCVDDCLN 44
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2,
alternative splicing, cell cycle; HET: SAM; 2.00A {Homo
sapiens}
Length = 300
Score = 32.6 bits (74), Expect = 0.016
Identities = 12/72 (16%), Positives = 24/72 (33%)
Query: 3 SLREAAEAFREFQRNRDRIKTEETNERASRPSKYVKIKTNKPVGTVRLETDKSSTPVCEC 62
+L+ + + ++ I E T + PS + I KP + L + + C
Sbjct: 26 ALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEATFGCSCTD 85
Query: 63 DESSPCGVGSSC 74
C +
Sbjct: 86 CFFQKCCPAEAG 97
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 31.8 bits (72), Expect = 0.028
Identities = 9/70 (12%), Positives = 22/70 (31%)
Query: 31 SRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGVGSSCINSSIGQSAESCIAIS 90
+ P+ + + ++ + + P C C ++ SC+ SC+
Sbjct: 33 AAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDI 92
Query: 91 SIIINNSPSV 100
+ V
Sbjct: 93 GSGGKYAEPV 102
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5;
EHMT1, structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 28.4 bits (63), Expect = 0.49
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 33 PSKYVKIKTNKPVGTVRLETDKSSTPVCECDES 65
PS Y + N + ++ + + C C +
Sbjct: 56 PSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDD 88
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP,
single-stranded DNA, DNA dGTPase, HD superfamily,
structural genomics; 2.20A {Thermus thermophilus}
Length = 376
Score = 28.1 bits (63), Expect = 0.56
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 6 EAAEAFR-EFQRNRDRI 21
E +R +Q++RDRI
Sbjct: 33 EPESLYRTPYQKDRDRI 49
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 27.8 bits (61), Expect = 0.86
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 21 IKTEETNERASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSP 67
IK+++T+E P I G RL E ++ SP
Sbjct: 195 IKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSP 241
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily,
substrate specificity, structural plasticity, hydrolase;
1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Length = 164
Score = 26.9 bits (60), Expect = 1.2
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 6 EAAEAFREFQRNRDRIK 22
E F+ ++ ++ +
Sbjct: 147 EHLSPFQAWRNFANKKE 163
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
deoxyguanosinetriphosphate triphsphohydrolase,
pseudomonas S PV. phaseolicola 1448A; 2.35A
{Pseudomonas syringae PV}
Length = 451
Score = 27.0 bits (60), Expect = 1.7
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 3 SLREAAEAFR-EFQRNRDRI 21
+L E R F ++ DRI
Sbjct: 17 TLHSPEELGRSPFHKDHDRI 36
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 2.0
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 3 SLREAAEAFREFQRNRD---RIKTEETNERASR 32
S+R+ E R+ + D ++ +E E+A +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 26.3 bits (57), Expect = 2.2
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 5 REAAEAFREFQRNRDRI 21
R A +AF + Q + D I
Sbjct: 139 RIADKAFYQ-QPDADII 154
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
10395N, triphosphohydro PSI-2, protein structure
initiative; 1.95A {Leeuwenhoekiella blandensis}
Length = 444
Score = 25.8 bits (57), Expect = 3.3
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 4 LREAAEAFR-EFQRNRDRI 21
LR + R F+ + DRI
Sbjct: 20 LRIEQDDTRLGFEVDYDRI 38
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH;
cytoplasmic assembly, ION channel, beta-barrel,
transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A
3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Length = 208
Score = 25.7 bits (56), Expect = 3.8
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 21 IKTEETNERASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSP 67
IK+++T+E P I G RL E ++ SP
Sbjct: 71 IKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSP 117
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 25.7 bits (56), Expect = 3.8
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 61 ECDESSPCGVGSSCINSSIG 80
C S+PC G+ C + G
Sbjct: 5 GCL-SNPCFPGAQCSSFPDG 23
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding
region, structural genomics, PSI, protein structure
initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Length = 197
Score = 25.5 bits (56), Expect = 4.2
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 6 EAAEAFREFQRNRDRI 21
A RE+ I
Sbjct: 171 AACALLREYNACNGVI 186
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 25.3 bits (56), Expect = 4.2
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 1 MTSLREAAEAFREFQRNRD 19
+ F + R R
Sbjct: 155 SIFVCRVRNVFAFYDRERT 173
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 25.4 bits (56), Expect = 4.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 56 STPVCECDESSPCGVGSSCINSSIGQ 81
+ C PC G +C N+ +
Sbjct: 128 DKDLNYCGTHQPCLNGGTCSNTGPDK 153
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 25.5 bits (55), Expect = 4.9
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 36 YVKIKTNKPVGTVRLETDKSSTPVCEC 62
++ + + L+ D + TP C+C
Sbjct: 262 IDQVPVT--ILNILLDCDVNKTPWCDC 286
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 3 SLREAAEAFREFQRNRDRIK 22
S A+A R+ RN K
Sbjct: 322 SFESFAQAVRDIARNAMPGK 341
>2ak0_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR
{Synthetic}
Length = 26
Score = 22.8 bits (48), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 56 STPVCECDESSPCGVGSS 73
S PVC + S+ CG G +
Sbjct: 4 SNPVCHLEHSNLCGAGGA 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.120 0.324
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,482,740
Number of extensions: 70395
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 57
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.8 bits)