RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11187
         (115 letters)



>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 196

 Score = 28.0 bits (62), Expect = 0.23
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 1  MTSLREAAEAFREFQRNRDRIKTEETNERASRPSK-YVKIKTNKPVGTVRLETDKSSTPV 59
          M+SL+ A    R+ Q  R  IK +E +    +P   Y+   +  P  +++     S    
Sbjct: 9  MSSLQNA----RDLQDIR--IKNKERHHLCPQPGSLYLTKSSTLPRISLQAAVGDSVPSA 62

Query: 60 CECDESSPCGVGSSCIN 76
          C   +    GV  +CI+
Sbjct: 63 CSPKQLYMYGVSKACIS 79


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
           missouriensis [TaxId: 1866]}
          Length = 392

 Score = 27.2 bits (60), Expect = 0.53
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 4   LREAAEAFREFQRNRDRIKTEETNERA 30
           L+E A+AFR     ++ +   +  E  
Sbjct: 316 LKERAKAFRADPEVQEALAASKVAELK 342


>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 26.6 bits (57), Expect = 0.58
 Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 1/22 (4%)

Query: 5  REAAEAFREFQRNRD-RIKTEE 25
          R   + F  F +     I  + 
Sbjct: 2  RANKDIFTLFDKKGQGAIAKDS 23


>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 158

 Score = 26.0 bits (56), Expect = 0.93
 Identities = 3/19 (15%), Positives = 9/19 (47%)

Query: 4   LREAAEAFREFQRNRDRIK 22
           L E    F+ ++   ++ +
Sbjct: 139 LTEHLSPFQAWRNFANKKE 157


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 25.5 bits (55), Expect = 1.7
 Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 1/54 (1%)

Query: 33 PSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGVGSSCINSSIGQSAESC 86
             +  I   +    V    D +    C C     C + +      +    E  
Sbjct: 42 SLDFQFISQYRLTQGVIP-PDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPT 94


>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
          module {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 42

 Score = 23.2 bits (50), Expect = 2.7
 Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 1/23 (4%)

Query: 58 PVCECDESSPCGVGSSCINSSIG 80
          PV  C    PC     C+   + 
Sbjct: 1  PVNPCC-YYPCQHQGICVRFGLD 22


>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain
           VI) {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 173

 Score = 24.5 bits (52), Expect = 3.3
 Identities = 3/19 (15%), Positives = 7/19 (36%)

Query: 1   MTSLREAAEAFREFQRNRD 19
           +  L     AF+   ++  
Sbjct: 138 LVRLDAMFRAFKSLDKDGT 156


>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 159

 Score = 24.4 bits (52), Expect = 3.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 19  DRIKTEETNERASRPSKYVKIK 40
           D ++    NE+  RP   V IK
Sbjct: 129 DELEKLPVNEKTYRPLNDVHIK 150


>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
          {Plasmodium yoelii [TaxId: 5861]}
          Length = 169

 Score = 24.0 bits (51), Expect = 4.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 35 KYVKIKTNKPVGTVRLETDK 54
           Y K+K +   G + + T+ 
Sbjct: 6  AYYKMKGHTERGYITIYTNL 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.120    0.324 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,247
Number of extensions: 14009
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 36
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.2 bits)