RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1119
(1392 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 939 bits (2429), Expect = 0.0
Identities = 455/1134 (40%), Positives = 645/1134 (56%), Gaps = 92/1134 (8%)
Query: 297 LKVKSPVKISPLVIKVSGVDFHWIPILQKALAAEETSTKQKIILLSQLEPLSGIIGFFNC 356
L + + SP+ + V F W+ L+ LA + + + L++ SG++G NC
Sbjct: 1403 LCRQQTPQDSPVFLSVEDTSFRWVDSLKDILADASS---RPVWLMAVGCSTSGVVGMVNC 1459
Query: 357 IRKETGGERTRCFEILDKN----APPFNPEDPFYKVQVEKDLAVNILRNGQWGTYRHSIL 412
+RKE GG R RC + + + AP +P + ++ DL +N+ R+G WG +RH L
Sbjct: 1460 LRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRHFPL 1519
Query: 413 -QPIKRVMTDHAYINALVRGDMSSLTWEQGPVNMKTWKKYSKDNINHDIAQIYYSSINFR 471
Q T+HA++N L RGD+SS+ W P++ +YY+S+NFR
Sbjct: 1520 EQDRPEKQTEHAFVNVLSRGDLSSIRWVCSPLHYALPASCQDRLC-----SVYYTSLNFR 1574
Query: 472 DIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDSGKRVMGLTSGRSLANCCETDVEMA 531
D+ML T KL+P+ I + L + C++G E+SGR SG+RVMG+ LA
Sbjct: 1575 DVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA-SGRRVMGMVPAEGLATSVLLLQHAT 1633
Query: 532 WEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDA 591
WE+P WTLE+AA+VP VY TA Y++ + G+MQ GES+LIH+GSGGVGQAAI +A
Sbjct: 1634 WEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC 1693
Query: 592 EIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKL 651
+FTTVG+ EKR +++ FP + E NSRDTSFEQ V++ T G+GVDLVLNSLAEEKL
Sbjct: 1694 RVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKL 1753
Query: 652 QASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKA 711
QASVRCLAQ GRFLEIGKFDL+NN+ LGM VF++ +FHG++LD+ F + +
Sbjct: 1754 QASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSEL 1813
Query: 712 LQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICTPKVKQLL 771
L+ I G VQPL T+FP KVE AFRYMA GKHIGKV+I++R+EE L
Sbjct: 1814 LKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVREEEQGPAPRGLPPIAL 1873
Query: 772 -AVPRYYADSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWK 830
+ + + +KSY+I GGLGGFGL+LA WL LRGA+KLVLTSRSG++ GYQA +++ W+
Sbjct: 1874 TGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWR 1933
Query: 831 SYDVQVLISTDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLG 890
VQVL+ST + ++ G +L+TEA +LGPV G+FNLA+VL+DA+ ENQTPE F
Sbjct: 1934 RQGVQVLVSTSNASSLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSK 1993
Query: 891 PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGL 950
PK + T D+ +R CP L FV+FSSVSCGRGNAGQ NYG ANS MERICE RR +GL
Sbjct: 1994 PKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAMERICEKRRHDGL 2053
Query: 951 PGLAVEWGAVGEVGLVADMAEDNLEVVIGGTLQQRISNCLECLNEFLIQSEPIVASMVVA 1010
PGLAV+WGA+G+VG+V + N + VIGGTL QRI++CLE L+ FL Q P+++S V+A
Sbjct: 2054 PGLAVQWGAIGDVGVVLETMGTN-DTVIGGTLPQRIASCLEVLDLFLSQPHPVLSSFVLA 2112
Query: 1011 EKKAGS----GGATNIVDAVINILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFE 1066
EKKA + ++V AV +ILG+RD+ +++ STL +LG+DS+M VE++Q LERE +
Sbjct: 2113 EKKAAAPRDGSSQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHD 2172
Query: 1067 VFLTPQDIRGLTFAKLQDIAVSFENDDKSKPVSTEASGGQVTALSVEDIPDVGIQYLMRT 1126
+ L+ +++R L+ KLQ+++ T T S ED P L +
Sbjct: 2173 LVLSMREVRQLSLRKLQELS-----------SKTSTDADPATPTSHEDSPVRQQATLNLS 2221
Query: 1127 IGDEILANKPVIRLPSLKNNGSTVEEPVGNNNTIFMVPGIEGIATVLEPLAKNINAQVLV 1186
+ RL S+ + E P+ F+V IEG TV LA ++
Sbjct: 2222 TLLVNPEGPTLTRLNSV----QSAERPL------FLVHPIEGSITVFHGLAAKLSIPTYG 2271
Query: 1187 FQFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLG--- 1243
Q P D+I +A + ++ V ++ G+S+G VA E+ +L+
Sbjct: 2272 LQCTGAAPLDSIQSLASYYIECIRQ--VQPEGPYRIAGYSYGACVAFEMCSQLQAQQSAT 2329
Query: 1244 -TKCHLYLVDSAPDYV---------------------------------------LTSLR 1263
L+L D + +V L +L
Sbjct: 2330 PGNHSLFLFDGSHTFVLAYTQSVRAKMTPGCEAEAEAKAMYFFVQQFTDMEQGKVLEALI 2389
Query: 1264 KLPDWNAKLNYFLDLMPEDAT-HSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLL 1322
L A++ +DL+ + R A + Y+++ + Y P+ + GN+TLL
Sbjct: 2390 PLQGLEARVAATVDLITQSHAGLDRHALSFAARSFYQKLRAAENY-WPQAT-YHGNVTLL 2447
Query: 1323 RPTEQALPTA---EDYGLSKVCKKPVKVHFVDGNHFTVLDNIKSAQIIMHEDST 1373
R DY LS+VC V VH ++G+H T+L+ I+ S
Sbjct: 2448 RAKTGGAYGEDLGADYNLSQVCDGKVSVHVIEGDHRTLLEGSGLESILSIIHSC 2501
Score = 182 bits (462), Expect = 3e-46
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 3/233 (1%)
Query: 65 MAWETVSLMRGELYTEVPVVFENIKFMRATNVPKEGSVEFIVMVQKGSGNFEIVEG-GAA 123
+ W+T++ + E PVVFE++ +AT +PK G+V V + + S FE+ + G+
Sbjct: 894 LTWKTLARALSQNLEETPVVFEDVTLHQATILPKTGTVSLEVRLLEASHAFEVSDSNGSL 953
Query: 124 IVTGKVYIPADVKTEMVRIPDQYKIPRTEGEAIELQSRDIYKELRLRGYHYKGLFRSLNV 183
I +GKVY ++ + L D+YK+LRLRGY Y F+ +
Sbjct: 954 IASGKVYQWESPDPKLFDTRAAVDPADSTA-EFRLSQGDVYKDLRLRGYDYGPFFQLVLE 1012
Query: 184 ADGAGTQGKIRWHNNWVAFMDNMLQLQILQYDTRGLFVPTSIQKLVINVSDHVNLLSTLD 243
+D G +G+++W+++WV+F+D ML + IL GL++PT + I+ H L TL
Sbjct: 1013 SDLEGNRGRLQWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQ 1072
Query: 244 EETPEYPVFVYKEVEVIKSGGVEIRGLKASAIPRKKPLG-EPVLEKYKFIQNE 295
+ T V V + + + +GG G +S PR+ +P+LEK+ F +
Sbjct: 1073 DTTQAADVVVDRNLNTVVAGGALFLGAHSSVAPRRPQEHLKPILEKFCFTPHV 1125
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 582 bits (1501), Expect = 0.0
Identities = 165/713 (23%), Positives = 286/713 (40%), Gaps = 72/713 (10%)
Query: 348 SGIIGFFNCIRKETGGERTRCFEILDKNAPPFNPEDPFYKVQVEKDLAVNILRNGQWGTY 407
+ + G + E R ++ + + + LR G
Sbjct: 139 AALWGLLRSTQTEHPD-RFVLVDVPEPAQLLPALPGVLACGEPQ-----LALRRGGAHAP 192
Query: 408 RH---SILQPIKRVMTDHAYINALVRGDMSSLTWEQGPVNMKTWKKYSKDNINHDIAQIY 464
R + + A G + L P +
Sbjct: 193 RLAGLGSDDVLPVPDGTGWRLEATRPGSLDGLALVDEPTATAPLGD------GEVRIAMR 246
Query: 465 YSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDSGK---------RVMGLT 515
+ +NFRD ++ +G E +G + ++G RVMG+
Sbjct: 247 AAGVNFRDALIALGMYPGVAS----------LGSEGAGVVVETGPGVTGLAPGDRVMGMI 296
Query: 516 SGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGS 575
+ D M IP W+ AA+VP V+ TA YA+ ++ GES+L+H+ +
Sbjct: 297 PK-AFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAA 355
Query: 576 GGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTK 635
GGVG AAI LAR++ AE++ T + + + E++ +SR FEQ + T
Sbjct: 356 GGVGMAAIQLARHLGAEVYATASEDKWQAV------ELSREHLASSRTCDFEQQFLGATG 409
Query: 636 GRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLD 695
GRGVD+VLNSLA E AS+R L +GGRFLE+GK D+ + + + S+ D
Sbjct: 410 GRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDP--VEVADAHPGVSYQAF--D 465
Query: 696 NFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKIR 755
Q L + ++ + ++PL T + + EA R+++ +H+GK+++ +
Sbjct: 466 TVEAGPQRIGEMLHELVE-LFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMP 524
Query: 756 DEEPTKICTPKVKQLLAVPRYYADSNKSYIICGGLGGFGLELADWLVL-RGARKLVLTSR 814
D+ + ++ GG G G E+A LV+ RG R LVL SR
Sbjct: 525 PVW--------------------DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSR 564
Query: 815 SGVKNGYQALRIKIWKSYDVQVLISTDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKD 874
G A + +Y +V + D+ + +L P+ + + A VL D
Sbjct: 565 RGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEHPLTAVVHAAGVLDD 624
Query: 875 ALFENQTPEDFNASLGPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ E+ T E + L PK + + + V+FSSVS G+ GQ NY A
Sbjct: 625 GVSESLTVERLDQVLRPKVDGARNLLEL----IDPDVALVLFSSVSGVLGSGGQGNYAAA 680
Query: 935 NSIMERICEARRAEGLPGLAVEWGAVGEVGLVADMAE-DNLEVVIGGTLQQRISNCLECL 993
NS ++ + + R++ GLP ++ WG E G+ + + E + + G L L
Sbjct: 681 NSFLDALAQQRQSRGLPTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPISTEEGLSQF 740
Query: 994 NEFLIQSEPIVASMVVAEKKAGSGGATNIVDAVINILGLRDLKTVSLHSTLAE 1046
+ + +VA + + G+ +++ ++ + T +L +
Sbjct: 741 DAACGGAHTVVAPVRFSRLSDGNAIKFSVLQGLVGPHRVNKAATADDAESLRK 793
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 286 bits (733), Expect = 5e-89
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 4/201 (1%)
Query: 529 EMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARY 588
++ IPD +AAT Y TA +++ G++ GE +LIH+ +GGVG AA+++A+
Sbjct: 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61
Query: 589 MDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAE 648
+ A I+TT G+ KRE + + + E +G+SR F +++ T G GVD+VLNSLA
Sbjct: 62 IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 117
Query: 649 EKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSL 708
E +Q V+ LA GGRF+E+GK D+ + LG+ + SF V LD + L
Sbjct: 118 EAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQL 177
Query: 709 QKALQKAIDAGAVQPLVRTIF 729
+ + + + G ++ L T F
Sbjct: 178 LQHILQHVADGKLEVLPVTAF 198
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 190 bits (485), Expect = 2e-53
Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 53/334 (15%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRR-LYQH-----CVIGFEYSGRLRDSGK------ 509
++ +NF D+M+ R+ + V GFE SG + G
Sbjct: 36 RVKACGLNFIDLMV------------RQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYE 83
Query: 510 ---RVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKG 566
RVM + + A T VE ++IPD + +AA P + TA +F +++G
Sbjct: 84 IGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREG 143
Query: 567 ESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSF 626
S+L+H+ GGVGQA L + + K E I+ + + R+ +
Sbjct: 144 MSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHL------FDRNADY 197
Query: 627 EQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLG------- 679
Q V + + GVD+VL+ L + + L G ++ G ++
Sbjct: 198 VQEVKRIS-AEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKS 256
Query: 680 ---------MEVFMRETSFHGVMLDNFFFAEQ--EWKMSLQKALQKAIDAGAVQPLVRTI 728
++++ G L N F + + + L + ++P+V ++
Sbjct: 257 WWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSL 316
Query: 729 FPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKI 762
+ ++V+EA + + +IGK+I+ + ++ PT +
Sbjct: 317 WALEEVKEAMQRIHDRGNIGKLILDV-EKTPTPL 349
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 187 bits (477), Expect = 2e-52
Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 43/317 (13%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDSGK----------RV 511
++ S++N D+M + P S ++G E SG + + G
Sbjct: 55 KVAASALNRADLMQRQGQYDPPPGASN------ILGLEASGHVAELGPGCQGHWKIGDTA 108
Query: 512 MGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILI 571
M L G A + IP+ TL AA +P + TA + + G +Q G+ +LI
Sbjct: 109 MALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLI 168
Query: 572 HAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSF 626
HAG GVG AAI L R A T G+ +K + K +G N + F
Sbjct: 169 HAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK---------LGAAAGFNYKKEDF 219
Query: 627 EQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG--KFDLANNNMLGMEVFM 684
+ +K TKG GV+L+L+ + + +V CLA GR++ G N + ++
Sbjct: 220 SEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFS-KLLF 278
Query: 685 RETSFHGVMLDNFFFAEQEWKMSLQKALQK-------AIDAGAVQPLVRTIFPEDKVEEA 737
+ S +L + + ++K L A + + P++ I+P +++EA
Sbjct: 279 KRGSLITSLLRS---RDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEA 335
Query: 738 FRYMAAGKHIGKVIIKI 754
+YM A K+IGK+++++
Sbjct: 336 HKYMEANKNIGKIVLEL 352
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 186 bits (475), Expect = 4e-52
Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 46/286 (16%)
Query: 495 VIGFEYSGRLRDSGK---------RVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAAT 545
++G E SG + G +V GL +G + A C P + AA
Sbjct: 88 ILGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAA 147
Query: 546 VPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREF 605
+P + T +F + +GES+LIH G+ G+G AI LAR AE++ T G+ K E
Sbjct: 148 LPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEA 207
Query: 606 IRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQ 660
+ +G N R F V+K G+GVD++L+ + + ++ LA+
Sbjct: 208 CER---------LGAKRGINYRSEDFAA-VIKAETGQGVDIILDMIGAAYFERNIASLAK 257
Query: 661 GGRFLEIG--------KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKAL 712
G I K +L + ++ + G + E K +++ L
Sbjct: 258 DGCLSIIAFLGGAVAEKVNL-------SPIMVKRLTVTGSTMRPRTAEE---KRAIRDDL 307
Query: 713 QK----AIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
++AG V P++ +F + V +A R + G H+GKV++ +
Sbjct: 308 LSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV 353
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 184 bits (469), Expect = 2e-51
Identities = 50/261 (19%), Positives = 97/261 (37%), Gaps = 37/261 (14%)
Query: 506 DSGKRVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQK 565
+++G + A P + E+AA +P + TA + ++
Sbjct: 107 CPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRP 166
Query: 566 GESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----N 620
G+ +L+ A GV AAI +A+ A + T G+ +K + +G N
Sbjct: 167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA---------LGADETVN 217
Query: 621 SRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-------KFDLA 673
+ + V + T G+G D V++ + ++ A GGR G
Sbjct: 218 YTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPF- 276
Query: 674 NNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDK 733
VF R+ S G + S + + ++ G ++P+V + P +
Sbjct: 277 ------AHVFYRQLSILGSTM---------ASKSRLFPILRFVEEGKLKPVVGQVLPLEA 321
Query: 734 VEEAFRYMAAGKHIGKVIIKI 754
E R + + GKV++++
Sbjct: 322 AAEGHRLLEERRVFGKVVLQV 342
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 177 bits (450), Expect = 6e-49
Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 54/317 (17%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHC-----VIGFEYSGRLRDSGK------- 509
+ + + F D ++T + YQ V G E +G +R + +
Sbjct: 54 DVKAAGVCFPDYLMT-----------KGEYQLKMEPPFVPGIETAGVVRSAPEGSGIKPG 102
Query: 510 -RVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGES 568
RVM A P Q +A + Y T +A GQ++ GE+
Sbjct: 103 DRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGET 162
Query: 569 ILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRD 623
+L+ +GG+G AAI +A+ M A++ V EF++ +G +
Sbjct: 163 VLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS---------VGADIVLPLEE 213
Query: 624 TSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-------KFDLANNN 676
+ + V + T G GVD+V++ + +VR LA GR L +G + N
Sbjct: 214 -GWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKV--NR 270
Query: 677 MLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEE 736
+L +R S GV F ++ Q L+K + G ++P V P + +
Sbjct: 271 LL-----LRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQ 324
Query: 737 AFRYMAAGKHIGKVIIK 753
A + A GK GK+++
Sbjct: 325 ALQDFADGKVYGKMVLV 341
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 176 bits (448), Expect = 2e-48
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 508 GKRVM-GLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKG 566
G RV T A +++P++ + A + Y TA A+ ++ G
Sbjct: 112 GDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAG 171
Query: 567 ESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NS 621
ES+L+H SGGVG AA +AR +I T GT E ++ + + G N
Sbjct: 172 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ---------NGAHEVFNH 222
Query: 622 RDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-----KFDLANNN 676
R+ ++ + K +G+D+++ LA L + L+ GGR + +G + + +
Sbjct: 223 REVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGTIEINPRD-- 280
Query: 677 MLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEE 736
+E+S GV L F + +E ALQ ++ G ++P++ + +P +KV E
Sbjct: 281 -----TMAKESSIIGVTL---FSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAE 332
Query: 737 AFR-YMAAGKHIGKVIIKI 754
A + GK+I+ +
Sbjct: 333 AHENIIHGSGATGKMILLL 351
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 172 bits (437), Expect = 4e-47
Identities = 58/320 (18%), Positives = 100/320 (31%), Gaps = 56/320 (17%)
Query: 463 IYYSSINFRDIMLTTAKLAPEVIESRR-LYQH-----CVIGFEYSGRLRDS--------- 507
+ +SIN D+ + Y GFE G +
Sbjct: 56 VNLASINPSDVAF------------IKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSL 103
Query: 508 -GKRV---MGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQM 563
GKRV GL++ S A + + D ED A + TA AMF +
Sbjct: 104 VGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTA-IAMFDIVKQ 162
Query: 564 QKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG---- 619
+ ++ ++ AG+ + + I LA+ TV E+ ++ IG
Sbjct: 163 EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD---------IGAAHV 213
Query: 620 -NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-----KFDLA 673
N + FE + + K + L+++ A + + R++ G +
Sbjct: 214 LNEKAPDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIR 273
Query: 674 NNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDK 733
L + G L + +E + QK G V + P +
Sbjct: 274 EPGQL----IFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAE 329
Query: 734 VEEAFRYMAAGKHIGKVIIK 753
K GKV I+
Sbjct: 330 AIAW-VPAELTKPNGKVFIR 348
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 168 bits (427), Expect = 3e-46
Identities = 66/305 (21%), Positives = 113/305 (37%), Gaps = 45/305 (14%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQH-----CVIGFEYSGRLRDSGKRVMGLTS 516
++ +NF D ++ Y + G E G + G+R L
Sbjct: 31 RVEAVGLNFADHLMR-----------LGAYLTRLHPPFIPGMEVVGVVE--GRRYAALVP 77
Query: 517 GRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSG 576
LA +P+ + E+AA P + T Y Q + GE +L+ A +G
Sbjct: 78 QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLT-AYLALKRAQARPGEKVLVQAAAG 136
Query: 577 GVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKG 636
+G AA+ +AR M + PEK +G ++ ++ +
Sbjct: 137 ALGTAAVQVARAMGLRVLAAASRPEKLALPLA---------LGAEEAATYAEVPERAKAW 187
Query: 637 RGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-------KFDLANNNMLGMEVFMRETSF 689
G+DLVL +E ++ S+ LA GGR + IG + + R +
Sbjct: 188 GGLDLVLEVRGKE-VEESLGLLAHGGRLVYIGAAEGEVAPIPP-------LRLMRRNLAV 239
Query: 690 HGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGK 749
G L E L + ++P+V +FP + E AFR + H GK
Sbjct: 240 LGFWLT-PLLREGALVEEALGFLLPRL-GRELRPVVGPVFPFAEAEAAFRALLDRGHTGK 297
Query: 750 VIIKI 754
V++++
Sbjct: 298 VVVRL 302
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 163 bits (415), Expect = 5e-44
Identities = 59/325 (18%), Positives = 115/325 (35%), Gaps = 54/325 (16%)
Query: 462 QIYYSSINFRDIMLTTAKLAP--------------EVIE-----SR---------RLYQH 493
+ S+N+RD ++ + V +R
Sbjct: 59 RTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPG 118
Query: 494 CVIGFEYSGRLRDSGKRVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATA 553
+ G G R +G L+ P +A+T+PC TA
Sbjct: 119 WLDG-LRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTA 177
Query: 554 VYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFI 613
+A+ G ++ G+ +++ G+GGV + +A+ AE+ T + EK +
Sbjct: 178 WFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----- 231
Query: 614 KEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG 668
+G N + + + V T RG D +L L S++ +A GR IG
Sbjct: 232 ----LGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIG 287
Query: 669 KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTI 728
+ + + ++ G+ + + + L A+D ++P++
Sbjct: 288 VLEGFEVSGPVGPLLLKSPVVQGISVGHR---------RALEDLVGAVDRLGLKPVIDMR 338
Query: 729 FPEDKVEEAFRYMAAGKHIGKVIIK 753
+ +V EA ++ G GKV+I+
Sbjct: 339 YKFTEVPEALAHLDRG-PFGKVVIE 362
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 162 bits (413), Expect = 7e-44
Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 41/316 (12%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQH-----CVIGFEYSGRLRDSGK------- 509
++ + IN DI + + Y V G E ++ G
Sbjct: 60 KMLAAPINPSDINMI-----------QGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKP 108
Query: 510 --RVMGLTSGR-SLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKG 566
V+ +G + E ++P L+ AAT+ TA + Q+Q G
Sbjct: 109 GDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPG 168
Query: 567 ESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSF 626
+S++ +A + GVGQA I +A + V + + + E++ +
Sbjct: 169 DSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRR 228
Query: 627 EQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-------KFDLANNNMLG 679
++ L LN + + +R LA+GG + G + + ++
Sbjct: 229 PEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASV--SLLI- 285
Query: 680 MEVFMRETSFHGVMLDNFFFAEQ-EWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAF 738
++ G L + + L L I G + + P + A
Sbjct: 286 ----FKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSAL 341
Query: 739 RYMAAGKHIGKVIIKI 754
K I+ +
Sbjct: 342 EASMKPFISSKQILTM 357
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 164 bits (418), Expect = 1e-43
Identities = 53/248 (21%), Positives = 90/248 (36%), Gaps = 38/248 (15%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMF--ICGQMQKGESILIHAGSGGVGQAAINLARYMDA 591
PD + E+AA V +TA + M++G+++LI SGG+G A A A
Sbjct: 195 KPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA 254
Query: 592 EIFTTVGTPEKREFIRK------------TFPFIKEENIGNSRDTS-FEQLVMKRTKGRG 638
V +P+K E R + F K+EN + ++ F + + + T G
Sbjct: 255 NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGED 314
Query: 639 VDLVLNSLAEEKLQASVRCLAQGGRFLEIG-------KFDLANNNMLGMEVFMRETSFHG 691
+D+V E ASV +GG ++D ++M G
Sbjct: 315 IDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDN-------RYLWMSLKRIIG 367
Query: 692 VMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVI 751
N + E + I G + P + ++ + +A + H GKV
Sbjct: 368 SHFAN--YREAW-------EANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVG 418
Query: 752 IKIRDEEP 759
+ E
Sbjct: 419 VLCLAPEE 426
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 160 bits (407), Expect = 3e-43
Identities = 50/318 (15%), Positives = 104/318 (32%), Gaps = 53/318 (16%)
Query: 466 SSINFRDIMLTTAKLAPEVIESRR-LYQH-----CVIGFEYSGRLRDSGK---------R 510
IN D++ Y H + G+E G + + G R
Sbjct: 42 RPINPSDLIP------------ITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKR 89
Query: 511 VMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESIL 570
V+ L + +T + IPD AA + TA +Q+ + +L
Sbjct: 90 VLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLL 149
Query: 571 IHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTS 625
++A +G L++ ++ + + E + + +G ++
Sbjct: 150 VNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR---------LGAAYVIDTSTAP 200
Query: 626 FEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG-----KFDLANNNMLGM 680
+ VM+ T G G D ++S+ L G FL IG + + A
Sbjct: 201 LYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAK 260
Query: 681 EVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPL-VRTIFPEDKVEEAFR 739
FH ++ + + L + ++ ++ + V + + V+ A
Sbjct: 261 VHA---NIFHLRHWNDEVSPYK--WQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVD 315
Query: 740 YMAAGKHI-GKVIIKIRD 756
+ + + GKV + +
Sbjct: 316 VVQSAEKTKGKVFLTSYE 333
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 157 bits (399), Expect = 3e-41
Identities = 59/299 (19%), Positives = 94/299 (31%), Gaps = 38/299 (12%)
Query: 483 EVIESRRLYQHCVIGFEYSGRLRDSGKRVMGLTSGRSLANCCETDVEMAWEIPDQWTLED 542
VI G L + T+ LA P T E+
Sbjct: 136 HVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEE 195
Query: 543 AATVPCVYATAVYAMFI--CGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTP 600
AA P TA + QM++G+ +LI SGG+G AI + V +
Sbjct: 196 AAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA 255
Query: 601 EKREFIR----------KTFPF---IKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLA 647
+K +R I ++ ++ GR D+V
Sbjct: 256 QKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG 315
Query: 648 EEKLQASVRCLAQGGRFLEIG-------KFDLANNNMLGMEVFMRETSFHGVMLDNFFFA 700
SV +GG + G FD ++M+ G A
Sbjct: 316 RVTFGLSVIVARRGGTVVTCGSSSGYLHTFDN-------RYLWMKLKKIVGS-----HGA 363
Query: 701 EQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEP 759
E Q+A + ++GAV P + ++P + EA R + + +GKV + E
Sbjct: 364 NHE----EQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCMAPEQ 418
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 152 bits (386), Expect = 3e-39
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 2/197 (1%)
Query: 779 DSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLI 838
+ ++ GG GG G ++A WL RGA L+L SRSG + ++ + +
Sbjct: 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTV 283
Query: 839 STDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
+ D+T V LL P+ +F+ A L D + T E + K +
Sbjct: 284 AACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARN 343
Query: 899 FDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVEWG 958
+ +R + L FV+FSS + G G Y N+ ++ + + RR++GLP AV WG
Sbjct: 344 LHELTREL--DLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWG 401
Query: 959 AVGEVGLVADMAEDNLE 975
G+ D
Sbjct: 402 TWAGSGMAEGPVADRFR 418
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 151 bits (384), Expect = 8e-39
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 5/197 (2%)
Query: 779 DSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLI 838
+ + +I GG+G G LA L GA +LVLTSR G + A + + + +V+
Sbjct: 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVH 316
Query: 839 STDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
+ D+ + L+T P + +F+ A +L DA+ + +PE F G K +
Sbjct: 317 AACDVAERDALAALVTAY----PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAEL 372
Query: 899 FDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVEWG 958
+ + + L FV+FSSV+ GNAGQ Y AN+ ++ + E RRA GLP +V WG
Sbjct: 373 LHQLTADI-KGLDAFVLFSSVTGTWGNAGQGAYAAANAALDALAERRRAAGLPATSVAWG 431
Query: 959 AVGEVGLVADMAEDNLE 975
G G+ A E++L
Sbjct: 432 LWGGGGMAAGAGEESLS 448
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 147 bits (373), Expect = 1e-38
Identities = 67/322 (20%), Positives = 117/322 (36%), Gaps = 55/322 (17%)
Query: 465 YSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGR---LRDS-------GKRVMGL 514
+ +N DI + + P V IGFE G L S G+ V +
Sbjct: 62 FVGVNASDINYSAGRYDPSVKPP------FDIGFEGIGEVVALGLSASARYTVGQAVAYM 115
Query: 515 TSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAG 574
G S A +A +P + T+ TA ++ G + +G+ +L+ A
Sbjct: 116 APG-SFAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAA 172
Query: 575 SGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSFEQL 629
+GG GQ A+ L++ + T + EK F++ +G N +
Sbjct: 173 AGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS---------LGCDRPINYKTEPVGT- 222
Query: 630 VMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG---------KFDLANNNMLGM 680
V+K+ GVD+V S+ +V LA GR + IG L
Sbjct: 223 VLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPA 282
Query: 681 EVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLV--------RTIFPED 732
++ + S G L+++ Q L + +G + V +
Sbjct: 283 KLLKKSASVQGFFLNHYLSKYQA----AMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLE 338
Query: 733 KVEEAFRYMAAGKHIGKVIIKI 754
+ A YM GK+ GK+++++
Sbjct: 339 SIFRAVNYMYMGKNTGKIVVEL 360
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 148 bits (375), Expect = 1e-37
Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 14/207 (6%)
Query: 783 SYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKI-----------WKS 831
+ ++ G E A L GA L+L + G +
Sbjct: 253 TVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD 312
Query: 832 YDVQVLISTDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP 891
+ T D+T LL + P+ + +L + + +
Sbjct: 313 LGATATVVTCDLTDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTA 372
Query: 892 KANATKYFDKYSRTM---CPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAE 948
KA A + D+ R V+FSSV+ G AGQ Y + ++ + RA+
Sbjct: 373 KATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAAGTAFLDALAGQHRAD 432
Query: 949 GLPGLAVEWGAVGEVGLVADMAEDNLE 975
G +V W + + L
Sbjct: 433 GPTVTSVAWSPWEGSRVTEGATGERLR 459
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 143 bits (364), Expect = 1e-37
Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 33/268 (12%)
Query: 508 GKRVMGLTSGR-----SLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQ 562
G V GLT G + A D + P T+ A+ +P V+ TA + Q
Sbjct: 88 GDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQ 147
Query: 563 MQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG--- 619
+Q G+++LI G GGVG AI +A A +F T E++R +G
Sbjct: 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARG-SDLEYVRD---------LGATP 197
Query: 620 --NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNM 677
SR+ + T G+G DLV ++L L AS + + G + + +
Sbjct: 198 IDASREPEDY--AAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCL--GWGTHKL 253
Query: 678 LGMEVFMRETSFHGVMLDNFFFAEQEWKMS--LQKALQKAIDAGAVQPLVRT-IFPEDKV 734
+ ++ ++ GV + A + + + + G + P + F ++
Sbjct: 254 --APLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEI 311
Query: 735 EEAFRYMA----AGKHIGKVIIKIRDEE 758
A+ + + GK+ I +
Sbjct: 312 GSAYDAVLGRNDVPRQRGKIAITVEGHH 339
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 147 bits (372), Expect = 3e-37
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 5/190 (2%)
Query: 783 SYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-GYQALRIKIWKSYDVQVLISTD 841
S ++ GG GG G +A L +GA LVLTSR G G LR ++ + V+V I+
Sbjct: 241 SVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAEL-EQLGVRVTIAAC 299
Query: 842 DITTEAGVVNLLTEANKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASLGPKANATKYFD 900
D + LL E + P+ +F+ A V D A + T +A + K A ++
Sbjct: 300 DAADREALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLH 359
Query: 901 KYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVEWGAV 960
+ + + L FV+FSS + G+ GQ Y AN+ ++ + E RR+ GL +V WG
Sbjct: 360 ELTADL--DLDAFVLFSSGAAVWGSGGQPGYAAANAYLDALAEHRRSLGLTASSVAWGTW 417
Query: 961 GEVGLVADMA 970
GEVG+ D
Sbjct: 418 GEVGMATDPE 427
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 134 bits (340), Expect = 1e-34
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 36/257 (14%)
Query: 508 GKRVMGLT----SGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQM 563
G +VMG+ A + + ++ + AA++P TA ++
Sbjct: 92 GDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTA-LQALNQAEV 150
Query: 564 QKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG---- 619
++G+ +LIHAG+GGVG AI LA+ + TT F++ +G
Sbjct: 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFLKA---------LGAEQC 200
Query: 620 -NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNML 678
N + F + VD V++ + + S+ CL + G + + +
Sbjct: 201 INYHEEDFLLAI-----STPVDAVIDLVGGDVGIQSIDCLKETGCIVSVP--------TI 247
Query: 679 GMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAF 738
+ ++ L K + ++ + IF + A
Sbjct: 248 TAGRVIEVAKQKHRRAFGLLKQFNIEEL---HYLGKLVSEDKLRIEISRIFQLSEAVTAH 304
Query: 739 RYMAAGKHIGKVIIKIR 755
+ G GK++ K+R
Sbjct: 305 ELLETGHVRGKLVFKVR 321
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 135 bits (343), Expect = 1e-34
Identities = 47/334 (14%), Positives = 87/334 (26%), Gaps = 51/334 (15%)
Query: 462 QIYYSSINFRDIMLTTAK--LAPEVIESRRLYQHCVI-GFEYSGRLRDSGK--------- 509
+ S +N DI P + G E + G
Sbjct: 39 KTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGD 98
Query: 510 RVMGLTSG------------RSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAM 557
V+ A P+ T+ AT+ TA +
Sbjct: 99 WVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLML 158
Query: 558 FICGQMQKGESILI-HAGSGGVGQAAINLARYMDAEIFTTVGTP----EKREFIRK---T 609
++ G+ I + G+ VG+ A + + ++ + + E +++ T
Sbjct: 159 THYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT 218
Query: 610 FPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIG- 668
+++N NSR+ + G L LN + + R L G L G
Sbjct: 219 QVITEDQN--NSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 276
Query: 669 ------KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQ 722
+ + G + +E K S + + G +
Sbjct: 277 MSFQPVTIPT-------SLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLT 329
Query: 723 PLVRTIFPEDKVEEAFRYMA---AGKHIGKVIIK 753
D + A GK +I
Sbjct: 330 DAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 363
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin, transferase;
HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 134 bits (338), Expect = 1e-34
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 51/253 (20%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLV 1214
+ +F+V IEG TV LA ++ Q P D+I +A + ++
Sbjct: 44 SSERPLFLVHPIEGSTTVFHSLASRLSIPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQP 103
Query: 1215 HGTDEIKLVGFSFGGMVALELAIKLEQLG----TKCHLYLVDSAPDYV------------ 1258
G ++ G+S+G VA E+ +L+ T L+L D +P YV
Sbjct: 104 EG--PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSPTYVLAYTQSYRAKLT 161
Query: 1259 ---------------------------LTSLRKLPDWNAKLNYFLDLMPEDATH-SRTYQ 1290
L +L L ++ +DL+ + R
Sbjct: 162 PGCEAEAETEAICFFVQQFTDMEHNRVLEALLPLKGLEERVAAAVDLIIKSHQGLDRQEL 221
Query: 1291 RNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTE---QALPTAEDYGLSKVCKKPVKV 1347
A + Y ++ + +YT PK K + GN+ LLR DY LS+VC V V
Sbjct: 222 SFAARSFYYKLRAAEQYT-PKAK-YHGNVMLLRAKTGGAYGEDLGADYNLSQVCDGKVSV 279
Query: 1348 HFVDGNHFTVLDN 1360
H ++G+H T+L+
Sbjct: 280 HVIEGDHRTLLEG 292
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 130 bits (328), Expect = 2e-33
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 51/253 (20%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLV 1214
+ +F+V IEG TV LA ++ Q P D+I +A + ++
Sbjct: 22 SSERPLFLVHPIEGSTTVFHSLASRLSIPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQP 81
Query: 1215 HGTDEIKLVGFSFGGMVALELAIKLEQLG----TKCHLYLVDSAPDYV------------ 1258
G ++ G+S+G VA E+ +L+ T L+L D +P YV
Sbjct: 82 EG--PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSPTYVLAYTGSYRAKLT 139
Query: 1259 ---------------------------LTSLRKLPDWNAKLNYFLDLMPEDATH-SRTYQ 1290
L +L L ++ +DL+ + R
Sbjct: 140 PGCEAEAETEAICFFVQQFTDMEHNRVLEALLPLKGLEERVAAAVDLIIKSHQGLDRQEL 199
Query: 1291 RNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQ---ALPTAEDYGLSKVCKKPVKV 1347
A + Y ++ + +YT PK K + GN+ LLR DY LS+VC V V
Sbjct: 200 SFAARSFYYKLRAAEQYT-PKAK-YHGNVMLLRAKTGGAYGEAAGADYNLSQVCDGKVSV 257
Query: 1348 HFVDGNHFTVLDN 1360
H ++G+H T+L+
Sbjct: 258 HVIEGDHATLLEG 270
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 129 bits (327), Expect = 9e-33
Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 41/284 (14%)
Query: 495 VIGFEYSGRLRDSGKRVMGLTSGRSLANC-------CET---DVEMAWEIPDQWTLEDA- 543
V+GFE + + + G V T G + C + E ++P L+D
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVH 122
Query: 544 -ATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEK 602
A + TA Y + +++ G+ +LIHA +GG+G + AR++ A + TV T EK
Sbjct: 123 LAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEK 182
Query: 603 REFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRC 657
E RK G N F ++V + T G+GVD+V +S+ ++ LQ S+ C
Sbjct: 183 AETARKL---------GCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDC 233
Query: 658 LAQGGRFLEIG-------KFDLANN-NMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQ 709
L G G + + + G R +H + + +
Sbjct: 234 LRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWH-------YMSNRSEIDEGS 286
Query: 710 KALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIK 753
K L A+ AG + V FP + A +YM + IG +++
Sbjct: 287 KCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLL 330
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 126 bits (320), Expect = 9e-32
Identities = 54/286 (18%), Positives = 105/286 (36%), Gaps = 45/286 (15%)
Query: 495 VIGFEYSGRLRDSGKRVMGL--------TSGRSLANCCE-TDVEMAWEIPDQWTLED--- 542
V+G E SG + GK V S + A + + ++P + E+
Sbjct: 66 VLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125
Query: 543 AATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEK 602
A TA+ ++KG+ +L+ A +GGVG L + A T EK
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEK 185
Query: 603 REFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRC 657
+ ++ G N+ + V+K T G+GVD +S+ ++ + S+
Sbjct: 186 LKIAKEY---------GAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAA 236
Query: 658 LAQGGRFLEIG-------KFDLANNNMLGME--VFMRETSFHGVMLDNFFFAEQEWKMSL 708
L + G F+ G F + L + +R + + A+ E
Sbjct: 237 LKRKGVFVSFGNASGLIPPFSI---TRLSPKNITLVRPQLYG-------YIADPEEWKYY 286
Query: 709 QKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
+++ + + +P A + + K +GK++++I
Sbjct: 287 SDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEI 332
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 125 bits (316), Expect = 2e-31
Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 38/281 (13%)
Query: 495 VIGFEYSGRLRDSGKRVMGLTSGRSLANC-------CET---DVEMAWEIPDQWTLEDAA 544
+G E +G + G V G +A E ++ D + E AA
Sbjct: 60 GLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAA 119
Query: 545 TVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKRE 604
+ T Y + Q++ GE IL HA +GGVG A A+ + A++ TV +PEK
Sbjct: 120 ALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA 179
Query: 605 FIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLA 659
+ +G + + V++ T G+ +V + + ++ S+ +A
Sbjct: 180 HAKA---------LGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVA 230
Query: 660 QGGRFLEIG-------KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKAL 712
G + G +L R T + + ++ L
Sbjct: 231 PRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGS-------YANNAQNLQTMADEL 283
Query: 713 QKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIK 753
+ +G ++ + +A ++A + G I+
Sbjct: 284 FDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILI 324
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 122 bits (309), Expect = 2e-30
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 48/252 (19%)
Query: 535 PDQWTLEDAATVPCVYATAVYAMF------ICGQMQKGESILIHAGSGGVGQAAINLARY 588
P + E A ++P TA +F +G+++LI G+GGVG A +A+
Sbjct: 114 PKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKA 173
Query: 589 MDAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVL 643
+ TT E E+ +K +G N +++ Q K VD V
Sbjct: 174 YGLRVITTASRNETIEWTKK---------MGADIVLNHKESLLNQF--KTQGIELVDYVF 222
Query: 644 NSLA-EEKLQASVRCLAQGGRFLEI----GKFDLANNNMLGMEVFMRETSFHGVMLDNFF 698
+ + ++ + G I DL + + SF F
Sbjct: 223 CTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLN-------ALKPKSLSFSHE----FM 271
Query: 699 FAE---QEWKMSLQ-KALQKA---IDAGAVQPLVRTI---FPEDKVEEAFRYMAAGKHIG 748
FA Q M + L+ ++ QP + + + +A + + + IG
Sbjct: 272 FARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIG 331
Query: 749 KVIIKIRDEEPT 760
K++I + +
Sbjct: 332 KLVINLNEGHHH 343
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 122 bits (309), Expect = 4e-30
Identities = 68/335 (20%), Positives = 123/335 (36%), Gaps = 58/335 (17%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHC--------VIGFEYSGRLRDSGK---- 509
+++ +S+N D+ + + A + R +G + SG + + G
Sbjct: 56 KVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKY 115
Query: 510 -----RVMGLTSGR---SLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICG 561
V +L+ P T AA++P V TA A+ G
Sbjct: 116 FKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 175
Query: 562 QMQ----KGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEEN 617
+ G+ +LI SGGVG AI + + DA + + E +RK
Sbjct: 176 GLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-DASELVRK--------- 225
Query: 618 IG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQ--GGRFLEIGKF 670
+G + + S E+ + + D +L+++ + L + G ++ +
Sbjct: 226 LGADDVIDYKSGSVEEQL---KSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTP 282
Query: 671 DLANNNMLGMEVFMRETSF-----------HGVMLDNFFFAEQEWKMSLQKALQKAIDAG 719
L N + LG+ M +T GV FF + + + +DAG
Sbjct: 283 FLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCL---DDIAELVDAG 339
Query: 720 AVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
++P++ FP KV EAF + G GK +I +
Sbjct: 340 KIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV 374
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 121 bits (305), Expect = 6e-30
Identities = 55/283 (19%), Positives = 102/283 (36%), Gaps = 40/283 (14%)
Query: 495 VIGFEYSGRLRDSGKRVMGLTSGRSLANC-------CET---DVEMAWEIPDQWTLEDAA 544
+G E +G + G V + +G + + A +P + E AA
Sbjct: 60 GLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAA 119
Query: 545 TVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKRE 604
T Y + +++ E L HA +GGVG A A+ + A++ TVGT +K +
Sbjct: 120 ASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ 179
Query: 605 FIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLA 659
K G N R+ + + + T G+ V +V +S+ + + S+ CL
Sbjct: 180 SALK---------AGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQ 230
Query: 660 QGGRFLEIG-------KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKAL 712
+ G + G +L N G R + + +E L
Sbjct: 231 RRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQG-------YITTREELTEASNEL 283
Query: 713 QKAIDAGAVQPLV--RTIFPEDKVEEAFRYMAAGKHIGKVIIK 753
I +G ++ V + +P + A + + G ++
Sbjct: 284 FSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI 326
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 115 bits (291), Expect = 9e-28
Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 45/285 (15%)
Query: 508 GKRVMGLTSGRSLANC--------CETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFI 559
G RV G + T + +IP + E AA +P +TA AM +
Sbjct: 87 GDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKL 146
Query: 560 CG------------QMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIR 607
G K +L++ GS + + R T P + +
Sbjct: 147 LGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-PHNFDLAK 205
Query: 608 K---TFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAEEK-LQASVRCLAQ-GG 662
F + R + Q + TK + L+ + + + + GG
Sbjct: 206 SRGAEEVF-------DYRAPNLAQTIRTYTKN-NLRYALDCITNVESTTFCFAAIGRAGG 257
Query: 663 RFL--------EIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQK 714
++ + + + LG +F +++ E+++ L + +
Sbjct: 258 HYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQ 317
Query: 715 AIDAGAVQPLVRTIFPE--DKVEEAFRYMAAGKHIG-KVIIKIRD 756
++ G + + D +++ + G+ G K+++++
Sbjct: 318 LVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG 362
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 114 bits (287), Expect = 1e-27
Identities = 46/254 (18%), Positives = 80/254 (31%), Gaps = 30/254 (11%)
Query: 508 GKRVMGLTSGR---SLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQ 564
G+RV TS + S A + + +PD + E AA +PC TA + F +
Sbjct: 83 GRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTA-WQAFEKIPLT 141
Query: 565 KGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIG-NSRD 623
K +LI G G V + + + K G
Sbjct: 142 KQREVLIV-GFGAVNNLLTQMLNNAGYVVDLVSA-SLSQALAAK---------RGVRHLY 190
Query: 624 TSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVF 683
Q+ + + +++ + A V L G + I D + F
Sbjct: 191 REPSQVT------QKYFAIFDAVNSQNAAALVPSLKANGHIICIQ--DRIPAPI--DPAF 240
Query: 684 MRETSFHGVMLDNFFFAEQEWKMSLQ----KALQKAIDAGAVQPLVRTIFPEDKVEEAFR 739
R S+H + L + +AL I G ++ IF +++ EA
Sbjct: 241 TRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALD 300
Query: 740 YMAAGKHIGKVIIK 753
+ K + +
Sbjct: 301 HSEQTKLKTVLTLN 314
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 113 bits (285), Expect = 5e-27
Identities = 35/296 (11%), Positives = 84/296 (28%), Gaps = 41/296 (13%)
Query: 489 RLYQHCVIGFEYSGRLRDSGK---------RVMGLTSGRSLANCCETDVEMAWEIPDQWT 539
RL +G E +G + ++G + + G + + +P+ T
Sbjct: 87 RLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLVLPEGAT 146
Query: 540 LEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGT 599
D A+ TA M +++ +++ A + +GQ + ++ V
Sbjct: 147 PADGASSFVNPLTA-LGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRK 205
Query: 600 PEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQAS 654
E+ + ++ G N+ +F Q + + G + ++ KL
Sbjct: 206 QEQADLLKA---------QGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQ 256
Query: 655 VRCLAQGGRFLEIGKFDLANNNMLGMEVF-----MRETSFHGVMLDNF---FFAEQEW-- 704
+ + ++ + T F+ + + +
Sbjct: 257 ILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLFPFLQ 316
Query: 705 --KMSLQKALQKAIDA---GAVQPLVRTIFPEDKVEEAFRYMAAGKHI--GKVIIK 753
AL++ + A +V + K K +I
Sbjct: 317 KIGRERANALKQRVVAELKTTFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLIN 372
>2cg5_B Fatty acid synthase; transferase-hydrolase complex,
transferase/hydrolase (comple fatty acid biosynthesis,
phosphopantetheine transferase; HET: COA; 2.7A {Homo
sapiens} PDB: 2png_A
Length = 91
Score = 95.9 bits (238), Expect = 7e-24
Identities = 33/87 (37%), Positives = 58/87 (66%)
Query: 1013 KAGSGGATNIVDAVINILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQ 1072
++V+AV +ILG+RDL V+L S+LA+LG+D++M+VE++QTLERE + L+ +
Sbjct: 2 TRDRDSQRDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVR 61
Query: 1073 DIRGLTFAKLQDIAVSFENDDKSKPVS 1099
++R LT KLQ+++ + + +
Sbjct: 62 EVRQLTLRKLQELSSKADEASELACPT 88
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 103 bits (259), Expect = 1e-23
Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 39/248 (15%)
Query: 527 DVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQK-----GESILIHAGSGGVGQA 581
D + P +AA +P TA A F + K +ILI G+GGVG
Sbjct: 128 DERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSI 187
Query: 582 AINLARYM-DAEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTK 635
A+ +AR D + T PE +E+++ +G + ++
Sbjct: 188 AVQIARQRTDLTVIATASRPETQEWVKS---------LGAHHVIDHSKPLAAEV--AALG 236
Query: 636 GRGVDLVLNSLA-EEKLQASVRCLAQGGRFLEI---GKFDLANNNMLGMEVFMRETSFHG 691
V ++ ++ +A GRF I FD+ + S H
Sbjct: 237 LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIM-------LFKRKAVSIHH 289
Query: 692 VMLDNFFFAEQEWKMSLQKALQKA---IDAGAVQPLVRTIFP---EDKVEEAFRYMAAGK 745
++ + L +D G ++ + +++A + +G
Sbjct: 290 ELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGT 349
Query: 746 HIGKVIIK 753
GKV+I+
Sbjct: 350 ARGKVVIE 357
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 95.0 bits (237), Expect = 6e-21
Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 33/239 (13%)
Query: 524 CETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAI 583
+ +AA + C T Y + +++L+ GG+G A+
Sbjct: 130 VIVPHYKYMYKLRRLNAVEAAPLTCSGITT-YRAVRKASLDPTKTLLVVGAGGGLGTMAV 188
Query: 584 NLARYMD-AEIFTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGR 637
+A+ + A I E E ++ G N+ + + T+ +
Sbjct: 189 QIAKAVSGATIIGVDVREEAVEAAKR---------AGADYVINASMQDPLAEIRRITESK 239
Query: 638 GVDLVLNSLAEEK-LQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDN 696
GVD V++ EK L + LA+ G+++ +G F A+ + + + E F G
Sbjct: 240 GVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG-ADLHYHAPLITLSEIQFVG----- 293
Query: 697 FFFAEQEWKMSLQKALQKAID---AGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
+ Q + AG V+P++ ++ EA + K IG+ ++
Sbjct: 294 -------SLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 91.1 bits (227), Expect = 1e-19
Identities = 45/254 (17%), Positives = 98/254 (38%), Gaps = 27/254 (10%)
Query: 510 RVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGES 568
+G A + + +P +ED A + P ++A + Q + ++
Sbjct: 107 DFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEP--ITVGLHAFHL-AQGCENKN 163
Query: 569 ILIHAGSGGVGQAAINLARYMDA-EIFTTVGTPEKREFIRK-----TFPFIKEENIGNSR 622
++I G+G +G AI A + A + + EK + TF NS
Sbjct: 164 VII-IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF---------NSS 213
Query: 623 DTSFEQLVMKRTKGRGVDLVLN-SLAEEKLQASVRCLAQGGRFLEIGKF--DLANNNMLG 679
+ S Q+ + R L+L + + ++ +V + +G DL +
Sbjct: 214 EMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATF 273
Query: 680 MEVFMRETSFHGVML-DNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAF 738
++ +E + G + + + QEW+ + + ++ + ++PL+ + +A
Sbjct: 274 GKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLS---LEPLIAHRGSFESFAQAV 330
Query: 739 RYMAAGKHIGKVII 752
R +A GKV++
Sbjct: 331 RDIARNAMPGKVLL 344
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 86.4 bits (214), Expect = 7e-19
Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 16/209 (7%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLV-FQFDHTNPPDTIPEMADSLLPHFKKRL 1213
IF P + G + + L+ + + L F F + D +K
Sbjct: 15 DQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFI------EEEDRLDRYADLIQKLQ 68
Query: 1214 VHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC-HLYLVDSAPDYVLTSLRKLPDWNAKL 1272
G + L G+S G +A E A KLE G + +VDS ++ L + +
Sbjct: 69 PEGP--LTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDG-RTVESDV 125
Query: 1273 NYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTD--PKHKAFGGNITLLRPTEQALP 1330
+++ ++ + + H ++ + Y +I LL
Sbjct: 126 EALMNVNRDNEALNS---EAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDI 182
Query: 1331 TAEDYGLSKVCKKPVKVHFVDGNHFTVLD 1359
+ ++ G H +L
Sbjct: 183 PEWLASWEEATTGAYRMKRGFGTHAEMLQ 211
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 88.0 bits (218), Expect = 9e-19
Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 17/209 (8%)
Query: 1160 IFMVPGIEGIATVLE--PLAKNINAQ--VLVFQ---FDH-TNPPDTIPEMADSLLPHFKK 1211
+ +V LA+ ++A V F P T+ + SL
Sbjct: 84 LILVCPTVMTTGPQVYSRLAEELDAGRRVSALVPPGFHGGQALPATLTVLVRSLADVV-- 141
Query: 1212 RLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC-HLYLVDSAPDYVLTSLRKLPDWNA 1270
+ E L G S GG+VA E+A +LE G + L+DS + R + +
Sbjct: 142 QAEVADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYS-FDGDGGRPEELFRS 200
Query: 1271 KLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALP 1330
LN QR A + + + +RP + +
Sbjct: 201 ALNERFVEYLRLTGGGNLSQRITAQVWCLEL-----LRGWRPEGLTAPTLYVRPAQPLVE 255
Query: 1331 TAEDYGLSKVCKKPVKVHFVDGNHFTVLD 1359
+ V +V G+HFT+++
Sbjct: 256 QEKPEWRGDVLAAMGQVVEAPGDHFTIIE 284
>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide
synthase, thioesterase, 6-DEB, TE, DEBS, alpha,
beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP:
c.69.1.22 PDB: 1mo2_A
Length = 300
Score = 84.5 bits (209), Expect = 9e-18
Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 23/209 (11%)
Query: 1160 IFMVPGIEGIATVLE--PLAKNINAQ--VLVFQF----DHTNPPDTIPEMADSLLPHFKK 1211
+ G I+ E LA + V + P ++ +A
Sbjct: 70 VICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEPLPSSMAAVAAVQADAV-- 127
Query: 1212 RLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC-HLYLVDSAPDYVLTSLRKLPDWNA 1270
G + G S G ++A LA +L G + L+D Y + W
Sbjct: 128 IRTQGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDV---YPPGHQDAMNAWLE 184
Query: 1271 KLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALP 1330
+L + + T R A AY R+T ++ G L+ E +
Sbjct: 185 EL---TATLFDRETVRMDDTRLTALGAYDRLTG--QWRPR---ETGLPTLLVSAGE-PMG 235
Query: 1331 TAEDYGLSKVCKKPVKVHFVDGNHFTVLD 1359
D V G+HFT++
Sbjct: 236 PWPDDSWKPTWPFEHDTVAVPGDHFTMVQ 264
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 80.3 bits (199), Expect = 6e-16
Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 33/263 (12%)
Query: 510 RVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGES 568
R +G+ A + A+EIP A P A ++ + + ++ G +
Sbjct: 129 RAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEP--LACCLHGVDL-SGIKAGST 185
Query: 569 ILIHAGSGGVGQAAINLARYMDA-EIFTTVGTPEKREFIRKTFPFIKEENIG-----NSR 622
+ I G G +G + LAR A + + KR + +G +
Sbjct: 186 VAI-LGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE---------VGATATVDPS 235
Query: 623 DTSFEQLVMKRTK--GRGVDLVLN-SLAEEKLQASVRCLAQGGRFLEIGKFDLANN-NML 678
+ + GVD+V+ + E ++ S R GG + +G +
Sbjct: 236 AGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIE 295
Query: 679 GMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAF 738
++ RE G ++ F + + AI+ + ++ D+ +
Sbjct: 296 PFDILFRELRVLGSFINPF-----VHRRAADLVATGAIE---IDRMISRRISLDEAPDVI 347
Query: 739 RYMAAGKHIGKVIIKIRDEEPTK 761
AA + KV++ E +
Sbjct: 348 SNPAAAGEV-KVLVIPSAERVAQ 369
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 79.2 bits (196), Expect = 1e-15
Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 38/240 (15%)
Query: 529 EMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLAR 587
+ W+ P E A P AV + G+S+LI G+G +G I +A+
Sbjct: 134 QNIWKNPKSIPPEYATLQEP--LGNAVDTVL--AGPISGKSVLI-TGAGPLGLLGIAVAK 188
Query: 588 YMDA-EIFTTVGTPEKREFIRK---TFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVL 643
A + + + +RE +K + N + + VM T G GVD+ L
Sbjct: 189 ASGAYPVIVSEPSDFRRELAKKVGADYVI-------NPFEEDVVKEVMDITDGNGVDVFL 241
Query: 644 N-SLAEEKLQASVRCLAQGGRFLEIG------KFDLANNNMLGMEVFMRETSFHGVMLDN 696
S A + L+ ++ + GR +G D N + + + +G+ +
Sbjct: 242 EFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNN------LIIFKALTIYGITGRH 295
Query: 697 FFFAEQEWKMSLQKALQKAIDAGAVQPLV-RTIFPEDKVEEAFRYMAAGKHIGKVIIKIR 755
+ + W + ++ + P++ DK EEAF M AGK GKV+ ++
Sbjct: 296 LW---ETWYTVSRLLQSGKLN---LDPIITHKYKGFDKYEEAFELMRAGKT-GKVVFMLK 348
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis,
alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A
{Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 77.2 bits (190), Expect = 1e-15
Identities = 35/209 (16%), Positives = 63/209 (30%), Gaps = 25/209 (11%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLV 1214
+F P I G + LA +N + V+ F + + +
Sbjct: 20 QGGKNLFCFPPISGFGIYFKDLALQLNHKAAVYGFHFI----EEDSRIEQYVSRITEIQP 75
Query: 1215 HGTDEIKLVGFSFGGMVALELAIKLEQLGTK-CHLYLVDSAPDYVLTSLRKLPDWNAKLN 1273
G L+G+S GG +A E+ +EQ G + +VD+ S+ + +
Sbjct: 76 EGP--YVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKK--DQSITADTENDDSAA 131
Query: 1274 YFLDLMPEDAT-HSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALPTA 1332
Y + + E R YQ A NI + Q +
Sbjct: 132 YLPEAVRETVMQKKRCYQEYWAQL-------------INEGRIKSNIHFIEAGIQTETSG 178
Query: 1333 ED--YGLSKVCKKPVKVHFVDGNHFTVLD 1359
++ + G H +L+
Sbjct: 179 AMVLQKWQDAAEEGYAEYTGYGAHKDMLE 207
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 78.4 bits (194), Expect = 2e-15
Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 24/229 (10%)
Query: 529 EMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLAR 587
E AW P E AA + P + AV+ ++ G G+S+LI G+G +G A + R
Sbjct: 130 ENAWVNPKDLPFEVAAILEP--FGNAVHTVYA-GSGVSGKSVLI-TGAGPIGLMAAMVVR 185
Query: 588 YMDA-EIFTTVGTPEKREFIRK--TFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLN 644
A I + P + F R N + ++V + T G GV+++L
Sbjct: 186 ASGAGPILVSDPNPYRLAFARPYADRLV-------NPLEEDLLEVVRRVT-GSGVEVLLE 237
Query: 645 -SLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQE 703
S E + + L GG +G L E+ MR + G+ + Q
Sbjct: 238 FSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLW---QT 294
Query: 704 WKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
W +D + PL+ P + EAF +A+G+ + KVI+
Sbjct: 295 WMQGTALVYSGRVD---LSPLLTHRLPLSRYREAFGLLASGQAV-KVIL 339
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 78.0 bits (193), Expect = 3e-15
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 44/242 (18%)
Query: 531 AWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMD 590
++ ++ L+ A C ATA +A + G++++I G+G +G + +AR +
Sbjct: 161 VLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVI-QGAGPLGLFGVVIARSLG 219
Query: 591 AE-IFTTVGTPEKREFIRK---TFPFIKEENIGNSRDTSFE---QLVMKRTKGRGVDLVL 643
AE + G+P + + + + N R+TS E + +M T GRG D +L
Sbjct: 220 AENVIVIAGSPNRLKLAEEIGADL-TL------NRRETSVEERRKAIMDITHGRGADFIL 272
Query: 644 ----NSLAEEKLQASVRCLAQGGRFLEIG--------KFDLANNNMLGMEVFMRETSFHG 691
+S A L L +GG + G F + + ++ +F G
Sbjct: 273 EATGDSRA---LLEGSELLRRGGFYSVAGVAVPQDPVPFKVYE------WLVLKNATFKG 323
Query: 692 VMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVI 751
+ + + ++ + + L+ P + +A M + + KVI
Sbjct: 324 I----WVSDTSHFVKTVSITSRNYQL---LSKLITHRLPLKEANKALELMESRE-ALKVI 375
Query: 752 IK 753
+
Sbjct: 376 LY 377
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 76.3 bits (188), Expect = 8e-15
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 29/224 (12%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLV--FQF----DHTNPPDTIPEMADSLLPH 1208
GN T+F G A L++ ++ Q + Q + E+ ++ L
Sbjct: 99 GNGPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLAT 158
Query: 1209 FKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC-HLYLVDSAP------------ 1255
++ HG L+G+S GG +A +A +L G + L L+D+ P
Sbjct: 159 LLEQQPHG--PYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEAN 216
Query: 1256 DYVLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAF 1315
L ++ + T F
Sbjct: 217 GLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRL--------LTTAHSVPF 268
Query: 1316 GGNITLLRPTEQALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLD 1359
G TL + ++ D H ++
Sbjct: 269 DGKATLFVAERTLQEGMSPERAWSPWIAELDIYRQDCAHVDIIS 312
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 2e-14
Identities = 88/634 (13%), Positives = 175/634 (27%), Gaps = 216/634 (34%)
Query: 129 VYIPADVKTEMVR-IPDQYK--IPRTEGEAIELQSRDIYKELRLRGYHYKGLFRSLNVAD 185
V+ A V + + D K + + E + I + S+D LF +L
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLR-------LFWTLL--- 72
Query: 186 GAGTQGKIRWHNNWVAFMDNMLQ------LQILQYDTRGLFVPTSIQKLVINVSDHVNLL 239
++ + F++ +L+ + ++ + R P+ + ++ I + + L
Sbjct: 73 ---SKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYI---EQRDRL 119
Query: 240 STLDEETPEYPVFVYKEVEVIKSG--------GVEIRGLKASAIPRKKPLGEPVLEKYKF 291
++ +Y V + ++ V I G+ S G+ +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------GKTWVAL-DV 170
Query: 292 IQNEGLKVKSPVKISPLVIKVSGVDFHWIPILQKALAAEETSTKQKIILLSQLEP--LSG 349
+ ++ K KI W+ + QK LL Q++P S
Sbjct: 171 CLSYKVQCKMDFKI------------FWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSR 216
Query: 350 IIGFFNC-IRKETGGER----------TRCFEILDKNAPPFNPE--DPFYKVQVEKDLAV 396
N +R + C +L N N + + F +L+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NV--QNAKAWNAF-------NLSC 266
Query: 397 NIL---RNGQ------WGTYRHSILQPIKRVMTDH------------------------- 422
IL R Q T H L +T
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 423 ----AYINALVRGDMSSLTWEQGPVNMKTWKKYSKDNINHDIAQIYYSSINFRDIMLTTA 478
+ I +R ++ TW+ WK + D + I SS+N
Sbjct: 327 PRRLSIIAESIRDGLA--TWDN-------WKHVNCDKLTTIIE----SSLN--------- 364
Query: 479 KLAPEVIESRRLYQHCVIGFEYS--------GRL-----RDSGKRVMGLTSGRSLANC-- 523
L P E R+++ + F S + + V+ SL
Sbjct: 365 VLEPA--EYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 524 -----------------CETDVEM------AWEIPDQWTLEDAATVPC---VYATAVYAM 557
E + + + IP + +D Y+ + +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 558 FICGQMQKGESI-------------LIHAGS-----GGVGQAAINLARYMDAEIFTTVGT 599
++ + H + G + L Y +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDND 538
Query: 600 PEKREFIRKTFPFIK--EENIGNSRDTSFEQLVM 631
P+ + F+ EEN+ S+ T ++ +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 62.9 bits (152), Expect = 7e-10
Identities = 101/781 (12%), Positives = 214/781 (27%), Gaps = 287/781 (36%)
Query: 588 YMDAEIFTTVGTPEKREFIRKTFP-----FIKEENIGNSRDTSFEQLVMKRTKGRGVDLV 642
+MD E T E + + F+ + + +D + ++ + + +D +
Sbjct: 6 HMDFE------TGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEE---IDHI 54
Query: 643 LNSLAEEKLQASVRCLAQGGRFLEIGKFD-LANNNMLGMEVFMRETSFHGVMLDNFFFAE 701
+ S G L F L + ++ F+ E V+ N+
Sbjct: 55 IMSKDAV----------SGTLRL----FWTLLSKQEEMVQKFVEE-----VLRINY---- 91
Query: 702 QEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI---RDEE 758
++ MS I QP + T ++ + + +V K R +
Sbjct: 92 -KFLMS-------PIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFAKYNVSRLQP 136
Query: 759 PTKICTPKVKQLLAVPRYYADSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSG-- 816
K+ +Q L ++ G+ G G W+ L + +
Sbjct: 137 YLKL-----RQAL-----LELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMDFK 183
Query: 817 ---VKNGY-----------QALRIKIWKSYDVQVLISTDDI----TTEAGVVNLLTE--- 855
+ Q L +I ++ + S++ + +A + LL
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 856 ANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKYSRTMCPTLGQFVV 915
N L +VL + Q + +NA F+ + + T
Sbjct: 244 ENCL----------LVLLNV----QNAKAWNA-----------FNLSCKILLTT------ 272
Query: 916 FSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVEWGAVGEVGLVADMAEDNLE 975
R T++ A + + L ++
Sbjct: 273 -------R-FKQVTDFLSAATTTHISLD----HHSMTLT---------------PDEVKS 305
Query: 976 VVIGGTLQQRISNCLECLNEFL----IQSEPIVASMVVAEKKAGSGGATNIVDAVINILG 1031
+ + L+C + L + + P S++ + D +
Sbjct: 306 L---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----------DGLATWDN 346
Query: 1032 LRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDIRGLTFAKLQDIAVSFEN 1091
+ + L + I+ +L L P + R + ++V F
Sbjct: 347 WKHVNCDKLTTI-------------IESSLN-----VLEPAEYRKM----FDRLSV-FPP 383
Query: 1092 DDKSKPVSTEASGGQVTALSVEDIPDVGIQYL---MRTIGDEILANKPVIRLPSLKNNGS 1148
IP + + + + ++ NK SL
Sbjct: 384 S--------------------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SL----- 416
Query: 1149 TVEEPVGNNNTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPH 1208
VE+ + +P I + + + S++ H
Sbjct: 417 -VEK--QPKESTISIPSI---------------------YLELKVKLENEYALHRSIVDH 452
Query: 1209 FK-KRLVHGTDEIKLVG----FSFGG--MVALELAIKLEQLGTKCHLYLVDSAPDYVLTS 1261
+ + D I +S G + +E ++ ++L D+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR---MVFL-----DFRFLE 504
Query: 1262 LRKL----PDWNAK---LNYFLDLMPEDATHSRTYQRNLA--HAAYKR-ITSILKYTDPK 1311
+K+ WNA LN L + Y+ + Y+R + +IL + PK
Sbjct: 505 -QKIRHDSTAWNASGSILNTLQQL--------KFYKPYICDNDPKYERLVNAILDFL-PK 554
Query: 1312 H 1312
Sbjct: 555 I 555
Score = 57.9 bits (139), Expect = 2e-08
Identities = 89/623 (14%), Positives = 170/623 (27%), Gaps = 174/623 (27%)
Query: 360 ETGGERTRCFEILDKNAPPFNPEDPFYKVQVEKDLAVNILRNGQWGTYRHSILQPIKRVM 419
ETG + + +IL F VQ D+ +IL + H I+
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEE---IDHIIMSKDAVSG 63
Query: 420 TD--------------HAYINALVRGD----MSSLTWE-QGPVNMKTWKKYSKDNINHDI 460
T ++ ++R + MS + E + P M +D + +D
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 461 AQIY--YSSINFRDIM-LTTA--KLAPEVIESRRLYQHCVIGFEYSGRLRDSGKRVMGLT 515
Q++ Y+ + + L A +L P + + V+G GK + L
Sbjct: 124 -QVFAKYNVSRLQPYLKLRQALLELRPA----KNVLIDGVLGS---------GKTWVALD 169
Query: 516 SGRSLANCCETDVEMAWEIPDQWTLEDAATV-PCVYATAVYAMF--ICGQMQKGESILIH 572
S C+ D ++ W + C V M + Q+ +
Sbjct: 170 VCLSYKVQCKMDFKIFW-----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 573 AGSG---GVGQAAINLARYMDAEIFTT-------VGTPEKREFIRKTFPFIKEENIG--- 619
S + L R + ++ + V + F N+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAF------NLSCKI 268
Query: 620 --NSRDTS-FEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFLEIGKFDL---- 672
+R + L T +D +L ++ L ++L+ DL
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLL---KYLDCRPQDLPREV 322
Query: 673 ANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAG--AVQP-LVR--- 726
N + + + + WK L I++ ++P R
Sbjct: 323 LTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 727 ---TIFPED-KVEEAFRYMAAGKHIGKVI----IKIRDEEPTKICTPKVKQLLAVPRYYA 778
++FP + ++ + + + K L +
Sbjct: 376 DRLSVFPPSAHIPT------------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--- 420
Query: 779 DSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLI 838
K I + + L KL AL I Y++
Sbjct: 421 --PKESTI---------SIPS-IYLELKVKL---------ENEYALHRSIVDHYNIPKTF 459
Query: 839 STDDITTEAGVVNLLTEANKLGPVDG-IFN-LAVVLKDALFENQTPE------DFNASLG 890
+DD+ +D ++ + LK+ + DF L
Sbjct: 460 DSDDLIPP--------------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LE 504
Query: 891 PKANATKYFDKYSRTMCPTLGQF 913
K S ++ TL Q
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQL 527
Score = 47.9 bits (113), Expect = 2e-05
Identities = 50/321 (15%), Positives = 102/321 (31%), Gaps = 113/321 (35%)
Query: 1107 VTALSVEDIPDVGIQYLMRTIGDEILANKPVI----RL-PSLKNNG-STVEEPVG---NN 1157
V +D+ D+ L + D I+ +K + RL +L + V++ V
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1158 NTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTN------PPDTIP---------EMA 1202
N F++ I T E ++ ++ + Q D + +
Sbjct: 90 NYKFLM---SPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 1203 DSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK-LEQLGTKCHL----YLVDSA--- 1254
L P K L+ G ++G G +A+ +C + + ++
Sbjct: 145 LELRPA-KNVLIDG-----VLGS--GKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 1255 -PDYVLTSLRKL-----PDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYT 1308
P+ VL L+KL P+W ++ + HS + + H+ + +LK
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSD-----------HSSNIKLRI-HSIQAELRRLLK-- 239
Query: 1309 DPKHKAFGGNITLLRPTEQALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLDNIKSAQIIM 1368
++ LL VL N+++A+
Sbjct: 240 SKPYE-----NCLL----------------------------------VLLNVQNAKAW- 259
Query: 1369 HEDSTDF--KTALFTSDDTGL 1387
++ + K L T+ +
Sbjct: 260 --NAFNLSCKI-LLTTRFKQV 277
Score = 46.0 bits (108), Expect = 1e-04
Identities = 61/347 (17%), Positives = 106/347 (30%), Gaps = 99/347 (28%)
Query: 1049 MDSMMAV------EIKQTLEREFEVFLTPQDI----RG-LTFAKLQDIAVSFENDDKSKP 1097
MD +I E F +D+ + L+ ++ I +S + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 1098 V--STEASGGQVTALSVEDIPDVGIQYLMRTIGDEILANKPVIRLPSLKNNG-STVEEPV 1154
+ + + ++ VE++ + ++LM I E R PS+ + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-------RQPSMMTRMYIEQRDRL 119
Query: 1155 GNNNTIFM---VPGIEGIATV------LEPLAKNIN-------------AQVL------- 1185
N+N +F V ++ + L P AKN+ V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1186 -----VF--QFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
+F + N P+T+ EM LL +D IK
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--------------NIK 224
Query: 1239 LEQLGTKCHLYLVDSAPDYVLTSLRKLPD-WNAK-LNYFLDLMPEDATHSRTYQRNLAHA 1296
L + L + + Y L L + NAK N F +L + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAF-NL------SCKI----LLTT 272
Query: 1297 AYKRITSILKYTDPKHKAFGGNITLLRPTE-------------QALP 1330
+K++T L H + + L P E Q LP
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 73.9 bits (182), Expect = 9e-14
Identities = 37/264 (14%), Positives = 93/264 (35%), Gaps = 39/264 (14%)
Query: 510 RVMGLTSGRSLANCCETDVEMAWEIPDQW-------TLEDAATV-PCVYATAVYAMFIC- 560
+G + A + D + AW + + + V P + A A+ +
Sbjct: 151 NELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEP--TSVAYNAVIVRG 208
Query: 561 GQMQKGESILIHAGSGGVGQAAINLARYMDA-EIFTTVGTPEKREFIRKTFPFIKEENIG 619
G ++ G++++I G G +G AA+ + ++ A ++ + + +R ++ +G
Sbjct: 209 GGIRPGDNVVI-LGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE---------LG 258
Query: 620 -----NSRDTSFEQLVMKRTKGRGVDLVLN-SLAEEKLQASVRCLAQGGRF--LEIGKFD 671
+ +F + V+ T G G L L + + + + + R +
Sbjct: 259 ADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318
Query: 672 LANNNML--GMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIF 729
A+ + G +R G + + + +D + ++
Sbjct: 319 RADAKIPLTGEVFQVRRAQIVGSQG---HSGHGTFPRVIS-LMASGMD---MTKIISKTV 371
Query: 730 PEDKVEEAFRYMAAGKHIGKVIIK 753
+++ E + + K + KV +
Sbjct: 372 SMEEIPEYIKRLQTDKSLVKVTML 395
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 72.6 bits (179), Expect = 2e-13
Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 47/277 (16%)
Query: 493 HCVIGFE-YSGRLRDSGKRVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYA 551
C G E Y R D G GL S S+A D AA +
Sbjct: 97 ACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGL 156
Query: 552 TAVYAM-FICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTV----GTPEKREFI 606
T +A+ + + G + ++ G GG+G I + R + A V ++
Sbjct: 157 TPYHAISRVLPLLGPGSTAVVI-GVGGLGHVGIQILRAVSA---ARVIAVDLDDDRLALA 212
Query: 607 RKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAEEK-LQASVRCLAQ 660
R+ +G S + + + + T G+G V + + + + + + +A
Sbjct: 213 RE---------VGADAAVKSGAGAADA-IRELTGGQGATAVFDFVGAQSTIDTAQQVVAV 262
Query: 661 GGRFLEIGKFDLANNNML--GMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAID- 717
G +G + G + S ++ E L + +
Sbjct: 263 DGHISVVG---IHAGAHAKVGFFMIPFGASVVT----PYWGTRSE--------LMEVVAL 307
Query: 718 --AGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
AG + T F D+ A+R + G G+ ++
Sbjct: 308 ARAGRLDIHTET-FTLDEGPAAYRRLREGSIRGRGVV 343
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 73.0 bits (180), Expect = 5e-13
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 65 MAWETVSLMRGELYTEVPVVFENIKFMRATNVPKEGSVEFIVMVQKGSGNFEIVEGGAAI 124
+ W+T++ G ++PVVFE++ +AT +PK G+V V + + S FE+ E G +
Sbjct: 896 IVWKTLARALGLGVEQLPVVFEDVVLHQATILPKTGTVSLEVRLLEASRAFEVSENGNLV 955
Query: 125 VTGKVYIPAD 134
V+GKVY D
Sbjct: 956 VSGKVYQWDD 965
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 69.9 bits (172), Expect = 2e-12
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 43/247 (17%)
Query: 529 EMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLAR 587
+++PD T E+ A + P + ++A G + G +L+ G+G +G + +A+
Sbjct: 137 AFCYKLPDNVTFEEGALIEP--LSVGIHACRR-GGVTLGHKVLV-CGAGPIGMVTLLVAK 192
Query: 588 YMDA-EIFTTVGTPEKREFIRK---TFPFIKEENIGNSRDTSFEQLVMKRTK--GRGVDL 641
M A ++ T + + ++ S +++ K G ++
Sbjct: 193 AMGAAQVVVTDLSATRLSKAKEIGADLVL-------QISKESPQEIARKVEGQLGCKPEV 245
Query: 642 VLN-SLAEEKLQASVRCLAQGGRFLEIG------KFDLANNNMLGMEVFMRETSFHGVML 694
+ + AE +QA + GG + +G L + +RE GV
Sbjct: 246 TIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPL-------LHAAIREVDIKGV-- 296
Query: 695 DNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
F + W +++ K+++ V+PLV FP +K EAF G + K+++K
Sbjct: 297 --FRYCN-TWPVAISMLASKSVN---VKPLVTHRFPLEKALEAFETFKKGLGL-KIMLKC 349
Query: 755 --RDEEP 759
D+ P
Sbjct: 350 DPSDQNP 356
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase,
thioesterase, norsolorinic acid, P polyketide,
acyltransferase; 1.70A {Aspergillus parasiticus}
Length = 265
Score = 68.3 bits (167), Expect = 2e-12
Identities = 42/240 (17%), Positives = 70/240 (29%), Gaps = 40/240 (16%)
Query: 1153 PVGNNNTIFMVPGIEGIATVLEPLAKNINAQVLV--FQ----FDHTNPPDTIPEMADSLL 1206
P+ T+FM+P G A L + + + V D N T M +S
Sbjct: 17 PMVARKTLFMLPDGGGSAFSYASLPR-LKSDTAVVGLNCPYARDPENMNCTHGAMIESFC 75
Query: 1207 PHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCH-LYLVDS-APDYVLTSLRK 1264
++R G L G+S GG A +A L G + H L ++D+ P + R
Sbjct: 76 NEIRRRQPRGP--YHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRA 133
Query: 1265 LPDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYT---------------- 1308
+ + F S L + +L Y
Sbjct: 134 FYEHCNSIGLFATQPGASPDGSTEPPSYLIPHFTAVVDVMLDYKLAPLHARRMPKVGIVW 193
Query: 1309 ------DPKHKAFGGNITLLRPTEQALPTA--EDYGLSKVCKKPVKVHFVDG-NHFTVLD 1359
D + + + + + + DG NHFT++
Sbjct: 194 AADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTI----MPGASFDIVRADGANHFTLMQ 249
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 69.6 bits (171), Expect = 2e-12
Identities = 43/234 (18%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQM--QKGESILIHAGSGGVGQAAINLARYMDA 591
+ + +AA + T++ A+ + E ++I G GG+ I + + +
Sbjct: 136 KLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMK 195
Query: 592 EIFTTVG---TPEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVL 643
T VG + + R+F + +G +D E L+ K T G G + +
Sbjct: 196 N-ITIVGISRSKKHRDFALE---------LGADYVSEMKDA--ESLINKLTDGLGASIAI 243
Query: 644 NSLAEEK-LQASVRCLAQGGRFLEIG----KFDLANNNMLGMEVFMRETSFHGVMLDNFF 698
+ + E+ + LAQ G + +G + L + + S +G + D
Sbjct: 244 DLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLL-GSNYGSLND--- 299
Query: 699 FAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
L+ ++ + ++G ++P + P D + +AF + G+ G+ +I
Sbjct: 300 ---------LEDVVRLS-ESGKIKPYIIK-VPLDDINKAFTNLDEGRVDGRQVI 342
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 68.4 bits (168), Expect = 4e-12
Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 32/238 (13%)
Query: 529 EMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLAR 587
+ ++PD +LE+ A + P + V+A G +Q G ++L+ G+G +G ++ A+
Sbjct: 134 DFCHKLPDNVSLEEGALLEP--LSVGVHACRRAG-VQLGTTVLV-IGAGPIGLVSVLAAK 189
Query: 588 YMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTK--GRGVDLVLN- 644
A + T +P + E + + + ++ + G ++ ++
Sbjct: 190 AYGAFVVCTARSPRRLEVAKN-CGADVTLVV-DPAKEEESSIIERIRSAIGDLPNVTIDC 247
Query: 645 SLAEEKLQASVRCLAQGGRFLEIG------KFDLANNNMLGMEVFMRETSFHGVMLDNFF 698
S E+ + + GG + +G L + RE V F
Sbjct: 248 SGNEKCITIGINITRTGGTLMLVGMGSQMVTVPL-------VNACAREIDIKSV----FR 296
Query: 699 FAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGK-HIGKVIIKIR 755
+ ++ ++L+ + V+ LV F ++ +AF + KV+I R
Sbjct: 297 YCN-DYPIALEMVASGRCN---VKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCR 350
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 67.3 bits (165), Expect = 1e-11
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 43/231 (18%)
Query: 536 DQWTLEDAATVPCVYATAVYAMFICG-QMQKGESILIHAGSGGVGQAAINLARYM-DAEI 593
+ L + A + TA A+ + G + I G GG+G A+ L + M A +
Sbjct: 156 SREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIV-GVGGLGHIAVQLLKVMTPATV 214
Query: 594 FTTVGTPEKREFIRKTFPFIKEENIG-----NSRDTSFEQLVMKRTKGRGVDLVLNSLAE 648
EK + + +G ++R +Q VM+ T+GRGV++ ++ +
Sbjct: 215 IALDVKEEKLKLAER---------LGADHVVDARRDPVKQ-VMELTRGRGVNVAMDFVGS 264
Query: 649 EK-LQASVRCLAQGGRFLEIG---KFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEW 704
+ + + L + GR + +G + + V E SF G ++ N
Sbjct: 265 QATVDYTPYLLGRMGRLIIVGYGGELRFP-----TIRVISSEVSFEGSLVGN-------- 311
Query: 705 KMSLQKALQKAID---AGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
L + + G V+ V D++ + + G+ +G+ ++
Sbjct: 312 ----YVELHELVTLALQGKVRVEVDI-HKLDEINDVLERLEKGEVLGRAVL 357
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A
{Amycolatopsis mediterranei} PDB: 3flb_A*
Length = 267
Score = 65.3 bits (159), Expect = 2e-11
Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 17/216 (7%)
Query: 1159 TIFMVPGIEGIATVLEPLAKNINAQVLVFQFD--------HTNPPDTIPEMADSLLPHFK 1210
+ +P G A+ PLAK + V V H P D+I + + LL +
Sbjct: 22 RLVCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRRHEPPVDSIGGLTNRLLEVLR 81
Query: 1211 KRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDS---APDYVLTSLRKLPD 1267
G + L G S G ++ ELA+++ + G ++L S AP +
Sbjct: 82 P---FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGAS 138
Query: 1268 WNAKLNYFLDL--MPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPT 1325
+ L + A ++ Y + +T+
Sbjct: 139 DERLVAELRKLGGSDAAMLADPELLAMVLPAIRSDYRAVETYRHEPGRRVDCPVTVFTGD 198
Query: 1326 E-QALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLDN 1360
+ E + P + + G HF ++D
Sbjct: 199 HDPRVSVGEARAWEEHTTGPADLRVLPGGHFFLVDQ 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 2e-11
Identities = 107/574 (18%), Positives = 169/574 (29%), Gaps = 221/574 (38%)
Query: 686 ETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAV--QP------LVRTI-FPEDKVEE 736
E V +FF A Q + K L + + A +P + + + + VE
Sbjct: 17 EHVLL-VPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 737 ---------------AF--RYMAAGKHIGKVIIKIRDEEPTKICTPKVKQLLAVPRYY-- 777
F Y+ G I + K+ E T + K K+L+ Y
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLE-GNDIHALAAKLLQENDTTL--VKTKELIKN--YITA 129
Query: 778 -------------------ADSNKS--YIICGGLGGFGLELADWLVLRGARKLVLTSRSG 816
+ I GG G
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-------------------------QG 164
Query: 817 VKNGY-QALRIKIWKSYDVQVLISTDDITTEAGVVNLL----TEANKLGPVDGIFNLAVV 871
+ Y + LR ++++Y VL+ D I A ++ L +A K+ G N+
Sbjct: 165 NTDDYFEELR-DLYQTY--HVLVG-DLIKFSAETLSELIRTTLDAEKVFT-QG-LNILEW 218
Query: 872 LKDALFENQTP-EDFNASLGPKANATKYFDKYSRTMCPTLG--QFVVFSSVSC---GR-- 923
L++ + TP +D+ S+ P S CP +G Q + V+ G
Sbjct: 219 LENP---SNTPDKDYLLSI-P----------IS---CPLIGVIQLAHYV-VTAKLLGFTP 260
Query: 924 GN-----AGQTNYG----------MANSIMERICEARRAEGLPGLAVEW----G-----A 959
G G T + +S R+A + G A
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-------ITVLFFIGVRCYEA 313
Query: 960 VGEVGLVADMAEDNLEVVIG---------GTLQQRISNCLECLNEFLIQSEPIVASMVVA 1010
L + ED+LE G Q+++ + + N L + + S+V
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-- 371
Query: 1011 EKKAGSGGATNIVDAVINILG----LRDLKTVSLHSTLAELGMDSMMAVEIKQT----LE 1062
GA N+V + G L L +L A G+D Q+ E
Sbjct: 372 ------NGAKNLV-----VSGPPQSLYGLNL-TLRKAKAPSGLD--------QSRIPFSE 411
Query: 1063 REFEV---FL---TP------QDIRGLTFAKLQDIAVSFENDDKSKPV-STEASGGQVTA 1109
R+ + FL +P L L VSF D PV T G
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF-DG----- 465
Query: 1110 LSVEDIPDVGIQYLMRTIGDEILAN--KPVIRLP 1141
D +R + I +IRLP
Sbjct: 466 ---SD---------LRVLSGSISERIVDCIIRLP 487
Score = 60.4 bits (146), Expect = 4e-09
Identities = 51/333 (15%), Positives = 94/333 (28%), Gaps = 120/333 (36%)
Query: 723 PLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICTPKVKQLLAVPRYYADSNK 782
+ ++ A + G I+ I P +
Sbjct: 1640 KAAQDVW-----NRADNHF--KDTYGFSILDIVINNPVNL-------------------- 1672
Query: 783 SYIICGGLGGFGLELADWLVLRGARK--LVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
I GG G + R+ + + V + KI+K + +
Sbjct: 1673 -TIHFGGEKG-----------KRIRENYSAMIFETIVDGKLKTE--KIFKEIN----EHS 1714
Query: 841 DDIT--TEAGVVNLLTE----ANKLGPVDGIFNLAVVLKDALFE------NQTPEDFNA- 887
T +E G+++ T+ A + + A FE + A
Sbjct: 1715 TSYTFRSEKGLLSA-TQFTQPA--------LTLMEK----AAFEDLKSKGLIPADATFAG 1761
Query: 888 -SLGPKANATKYFDKYS--------------------RTMCPTLGQFVVFSSVSCGRGNA 926
SLG +Y+ R G + V+ R
Sbjct: 1762 HSLG----------EYAALASLADVMSIESLVEVVFYR------GMTM---QVAVPRDEL 1802
Query: 927 GQTNYGMANSIMERICEARRAEGLPGLAVEWGAVGEVGLVADMAEDNLE---VVIGGTLQ 983
G++NYGM R+ + E L + G G + ++ N+E V G L+
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 984 --QRISNCLECLNEFLIQSEPIVASMVVAEKKA 1014
++N L + I + S+ + E +
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 57.4 bits (138), Expect = 3e-08
Identities = 111/747 (14%), Positives = 214/747 (28%), Gaps = 317/747 (42%)
Query: 316 DF-HWIPILQKALAAEETSTKQKIILLSQLEPLSGIIGFF-NCIRKETGGERTRC----- 368
F +P + AA++ T + E + +G+ + + G+ +
Sbjct: 36 QFNKILPEPTEGFAADDEPT-------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 369 --FE--ILDKN-----APPFNPEDPFYKVQVEKDLAVNILRNGQWGTY---RHSILQPIK 416
FE L+ N A E+ V+ ++ +++N Y R +P
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKE-----LIKN-----YITARIMAKRPFD 138
Query: 417 RVMTDHAYINALVRGDMSSLTWE---QGPVNMKTWKKYSKDNINHDIAQIY--YSSINFR 471
+ ++ A A+ G+ + L QG + Y ++ + +Y Y +
Sbjct: 139 K-KSNSALFRAVGEGN-AQLVAIFGGQGNTD-----DYFEE-----LRDLYQTYHVL-VG 185
Query: 472 DIMLTTAK----LAPEVIESRRLYQHCVIGFEYSGRLRDSGKRVMGLTSGRSLANCCETD 527
D++ +A+ L +++ +++ G +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQ---GL----------------------------N 214
Query: 528 VEMAWEIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESI-LIHAGSGGVGQAAINLA 586
+ + W LE+ + P + S LI GV Q LA
Sbjct: 215 I-LEW-------LENPSNTPDKDYLLSIPI----------SCPLI-----GVIQ----LA 247
Query: 587 RYMDAEIFTTVG-TPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNS 645
Y+ +G TP G R +K G LV
Sbjct: 248 HYVVT--AKLLGFTP------------------GELRS------YLKGATGHSQGLV--- 278
Query: 646 LAEEKLQASVRCLAQGG---RFLEIGKFDLANNNMLGMEVFMRETSFH-GVMLDNFFFAE 701
+ +A+ F + + F GV
Sbjct: 279 --------TAVAIAETDSWESFFVSVR------KAI-------TVLFFIGV-------RC 310
Query: 702 QEW--KMSL-QKALQKAIDAGAVQP----LVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
E SL L+ +++ P + + +++V+ ++ K
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQ---------DYVNKT---- 356
Query: 755 RDEEPTKICTPKVKQL-LAVPRYYADSNKSYIICG---GLGGFGLELADWLVLRGARKLV 810
P KQ+ +++ + K+ ++ G L G L L RK
Sbjct: 357 NSHLPAG------KQVEISL----VNGAKNLVVSGPPQSLYGLNLTL---------RKA- 396
Query: 811 LTSRSGVKNGYQALRI-----KIWKSYDVQVL-IS----TDDITTEAGVVNLLTEANKLG 860
+ SG+ Q+ RI K+ + + L ++ + LL A+ L
Sbjct: 397 -KAPSGLD---QS-RIPFSERKL--KFSNRFLPVASPFHSH----------LLVPASDL- 438
Query: 861 PVDGIFNLAVVLKDALFENQTPEDFNAS-LGPKANATKYFDKYSRTMCPTLGQFVVFSSV 919
+ KD + N FNA + P V+ +
Sbjct: 439 ----------INKDLVKNN---VSFNAKDIQ----------------IP------VYDTF 463
Query: 920 SCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVEWGAV-------------GEVGLV 966
G ++ SI ERI + + L V+W G +
Sbjct: 464 D------GSDLRVLSGSISERIVDC-----IIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 967 ADMAEDNLE-----VVIGGTLQQRISN 988
+ N + V++ GTL +
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 51.2 bits (122), Expect = 3e-06
Identities = 55/280 (19%), Positives = 83/280 (29%), Gaps = 93/280 (33%)
Query: 406 TYRHSILQPIKRVMTDHAYINALVRG-----DMSSLTWEQGPVNMKTWKKYSKDNINHDI 460
TY SIL + + +G + S++ +E +K K+ IN
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-INEHS 1714
Query: 461 AQIYYSSINFRD-------------IMLTTAKLAPEVIESRRLYQHCV------IGFEYS 501
+S FR + K A E ++S+ L +G EY+
Sbjct: 1715 -----TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYA 1768
Query: 502 GRLRDSGKRVMGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYA--MFI 559
A DV M ++E V V+ M +
Sbjct: 1769 -------------------ALASLADV-M--------SIESLVEV-------VFYRGMTM 1793
Query: 560 CGQMQKGESILIHAGSGGVGQAAINLAR---YMDAEIFTTVGTPEKREFIRKTFPFIKEE 616
+ + E G G AIN R E V ++T + E
Sbjct: 1794 QVAVPRDE-----LGRSNYGMIAINPGRVAASFSQEALQYVV----ERVGKRTGWLV--E 1842
Query: 617 --NIGNSRDTSFEQLVMKRTKG--RGVDLVLNSLAEEKLQ 652
N N + +Q V G R +D V N L KLQ
Sbjct: 1843 IVNY-NVEN---QQYV---AAGDLRALDTVTNVLNFIKLQ 1875
Score = 46.6 bits (110), Expect = 6e-05
Identities = 97/615 (15%), Positives = 155/615 (25%), Gaps = 255/615 (41%)
Query: 36 QLKNSFRSLSASPKRLASTALDRVYQRFQMAWETVSLMRGELYTEVPVVFENIKFMR--A 93
QL+ F + P A D E + EL KF+ +
Sbjct: 32 QLQEQFNKILPEPTE--GFAADD---------EPTTPA--ELVG---------KFLGYVS 69
Query: 94 TNVPKEGSVEFIVMVQKGSGNFE--IVEGG-----AAIVTGKVYIPADVKTEMVRIPDQY 146
+ V +F ++ FE +EG AA + + E+++ Y
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---Y 126
Query: 147 -------KIPRTEG------EAIELQSRDIY-------------KELRLRGYH-YKGLFR 179
K P + A+ + + +ELR Y Y L
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVG 185
Query: 180 SL---------NVADGAGTQGKIRWHN----NW-----------------VAFMDNMLQL 209
L + K+ W ++ ++ +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGV 243
Query: 210 -QILQYD--------TRGLFVP------TSIQKLV----INVSD-----HVNLLSTLD-- 243
Q+ Y T G Q LV I +D V++ +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 244 --------EETPEY---PVFVYKEVEVIKSGGVE-----IRGLKASAIPRKKPLGEPVLE 287
E P P + +E + GV I L +++ ++
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLSISNL-----TQEQ------VQ 350
Query: 288 KYKFIQNEGLKVKSPVKIS----P--LVIKVSG-------VDFHWIPILQKALAAEETST 334
Y N L V+IS LV VSG ++ L+KA A +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLT----LRKAKA--PSGL 402
Query: 335 KQKIILLSQLEPLSGIIGFFNCIRKETGGERTRCFEILDKNAPPFNP-EDPFYKVQVEKD 393
Q I S+ RK R F P PF
Sbjct: 403 DQSRIPFSE--------------RKLKFSNR-------------FLPVASPF-------- 427
Query: 394 LAVNILRNGQWGTYRHS-ILQP-IKRVMTDHAYINALVRGDMSSLTWEQGPV-NMKTWK- 449
HS +L P + D N + Q PV +
Sbjct: 428 ---------------HSHLLVPASDLINKDLVKNNVSFNA--KDI---QIPVYDTFDGSD 467
Query: 450 -KYSKDNINHDIA-QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDS 507
+ +I+ I I + + A H ++ F G S
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKA-------------TH-ILDF---GPGGAS 510
Query: 508 GKRVMGLTS----GR 518
G + LT G
Sbjct: 511 G--LGVLTHRNKDGT 523
Score = 45.4 bits (107), Expect = 1e-04
Identities = 109/594 (18%), Positives = 178/594 (29%), Gaps = 196/594 (32%)
Query: 837 LISTDDITTEA-------GVVNLLTEANKLGPVDGIFNLAVVLKDALFENQ--TPED--- 884
+ D+ TT A G V+ L E +K+G D + L + L + FEN D
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTE--FENCYLEGNDIHA 103
Query: 885 FNASLGPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEA 944
A L + + T + ++ NY A + +R +
Sbjct: 104 LAAKLLQENDTT-----------LVKTKELI-------------KNYITARIMAKRPFDK 139
Query: 945 RRAEGLPGLAVEWGAV--GEVGLVADMAEDNLEVVIGGTLQQRISNCLECLNEFLIQSEP 1002
+ L + AV G LVA + GG Q + E L +
Sbjct: 140 KSNSAL------FRAVGEGNAQLVA---------IFGG--QGNTDDYFEELRDLYQTYHV 182
Query: 1003 IV------ASMVVAEKKAGSGGATNIVDAVINILG-LRDLKTVSLHSTLAELGMDSMMAV 1055
+V ++ ++E + A + +NIL L + L + + S +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLI 241
Query: 1056 EIKQTLEREFEVF-----LTPQDIR----GLTFAKLQDIAVSFENDDKSKPVSTEASGGQ 1106
+ Q + V TP ++R G T Q + + V+ +
Sbjct: 242 GVIQLAH--YVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTA---------VAIAETD-- 287
Query: 1107 VTALSVEDIPDVGIQYLMRTIGDEILANKPVIRLPSLKNNGSTVEEPVGNNNTI--FMVP 1164
+ S I L IG P LP S +E+ + NN + M+
Sbjct: 288 -SWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPP-----SILEDSLENNEGVPSPML- 339
Query: 1165 GIEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVG 1224
I + E + + + TN S LP K++
Sbjct: 340 SISNLT--QEQVQDYV---------NKTN----------SHLPA-GKQV----------- 366
Query: 1225 FSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLT----SLRKLPDWNAKLNYFLDLMP 1280
+ LV+ A + V++ SL L K P
Sbjct: 367 ----------------------EISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-----AP 399
Query: 1281 EDATHSRT--YQRNLA-HAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALPTAEDYGL 1337
SR +R L + + S P H LL P + +D
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVAS------PFHSH------LLVPASDLIN--KDLVK 445
Query: 1338 SKV------CKKPVKVHFVDGNHFTVLD-NIKSA---QII---MH-EDSTDFKT 1377
+ V + PV DG+ VL +I II + E +T FK
Sbjct: 446 NNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 44.3 bits (104), Expect = 4e-04
Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 128/313 (40%)
Query: 73 MRG-ELYTEVPV---VFENI-KFMRAT----------NVPKEGSVEFIVMVQKGSGNFEI 117
M G +LY V+ + T N P ++ F G I
Sbjct: 1631 M-GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-----GGEKGKRI 1684
Query: 118 VEGGAAIVTGKVY-IPADVKTEMVRIPDQYKIPRT----EGEAIEL------Q------S 160
E +A++ + D K + +I + T E L Q
Sbjct: 1685 RENYSAMI----FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 161 RDIYKELRLRGY---------HYKGLFRSLNVADG--------AGTQGKIRWHNNWVAFM 203
+ +++L+ +G H SL G A ++
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH------SL----GEYAALASLADV----------MSIE 1780
Query: 204 DNMLQLQILQYDTRGLFVPTSIQKLVINVSDH----VN---LLSTLDEETPEYPV-FVYK 255
++++ Y RG+ + ++ + + S++ +N + ++ +E +Y V V K
Sbjct: 1781 S---LVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 256 E----VE-----------VIKSGGVEIRGLKASAIPRKKPLGEPVLEKYKFIQNEGLKVK 300
VE V +G ++R L + VL +K++
Sbjct: 1836 RTGWLVEIVNYNVENQQYVA-AG--DLRALDT--------VTN-VLNF--------IKLQ 1875
Query: 301 SPVKISPLVIKVS 313
+ I L +S
Sbjct: 1876 K-IDIIELQKSLS 1887
Score = 39.6 bits (92), Expect = 0.010
Identities = 40/188 (21%), Positives = 53/188 (28%), Gaps = 52/188 (27%)
Query: 1166 IEGIATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGF 1225
+E +L P A A L QF+ P T A P T +LVG
Sbjct: 16 LE--HVLLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEP---------TTPAELVG- 62
Query: 1226 SFGGMVA--------------LELAIK-LEQ--L-GTKCHLYLVDSAPDYVLTSLRKLPD 1267
F G V+ L L + E L G H L T+L K +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKTKE 121
Query: 1268 WNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQ 1327
K NY + + L A + + FGG Q
Sbjct: 122 L-IK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VA-----IFGG---------Q 163
Query: 1328 ALPTAEDY 1335
+DY
Sbjct: 164 G--NTDDY 169
Score = 35.8 bits (82), Expect = 0.14
Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 76/188 (40%)
Query: 5 DDVSSSSSEVKRDTDVHIGTLLKEAPRK----G----LVQLKNSFRSLSASP-------- 48
D V+ ++S + V I L + G L L + R A
Sbjct: 351 DYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 49 --KR-------------------LASTALDRVYQ---RFQMAWETVSL------------ 72
+R L A D + + + +++ +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 73 MRG----------ELYTEVPVVFENIKFMRATNV----PKEGSVEFI-VMVQK---GSGN 114
+R + +PV +E +AT++ P G + V+ + G+G
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVLTHRNKDGTG- 524
Query: 115 FEIVEGGA 122
++ G
Sbjct: 525 VRVIVAGT 532
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 64.4 bits (157), Expect = 3e-11
Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 16/213 (7%)
Query: 1159 TIFMVPGIEGIATVLEPLAKNINAQVLVFQFD-------HTNPPDTIPEMADSLLPHFKK 1211
+ P G + PL + + + + T+ + + E+ D
Sbjct: 15 QLICFPFAGGYSASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELTDLYKQELNL 74
Query: 1212 RLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC-HLYLVDS-APDYVLTSLRKLPDWN 1269
R L G S GGM+ LA KLE+ G + + P + LPD +
Sbjct: 75 RP---DRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPD-D 130
Query: 1270 AKLNYFLDL--MPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQ 1327
L++ + L MP + ++ + ++ ++ + + +
Sbjct: 131 QFLDHIIQLGGMPAELVENKEVMSFFLPSFRSDYRALEQFELYDLAQIQSPVHVFNGLDD 190
Query: 1328 ALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLDN 1360
+ G K K + H DG H +L
Sbjct: 191 KKCIRDAEGWKKWA-KDITFHQFDGGHMFLLSQ 222
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase,
thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae}
PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Length = 319
Score = 64.6 bits (157), Expect = 5e-11
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 16/169 (9%)
Query: 1194 PPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTK--CHLYLV 1251
P + D+ + + L+G + G ++A ELA +LE+ + LV
Sbjct: 139 LPADLDTALDAQARAILRAAGDAP--VVLLGHAGGALLAHELAFRLERAHGAPPAGIVLV 196
Query: 1252 DSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPK 1311
D Y + W+ +L + + + R LA Y R P+
Sbjct: 197 DP---YPPGHQEPIEVWSRQL---GEGLFAGELEPMSDARLLAMGRYARF-----LAGPR 245
Query: 1312 HKAFGGNITLLRPTEQALPTAEDYGL-SKVCKKPVKVHFVDGNHFTVLD 1359
+ L+R +E E+ G P V V G+HFT++
Sbjct: 246 PGRSSAPVLLVRASEPLGDWQEERGDWRAHWDLPHTVADVPGDHFTMMR 294
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A
{Streptomyces coelicolor} PDB: 3qmw_A*
Length = 280
Score = 63.5 bits (154), Expect = 8e-11
Identities = 37/222 (16%), Positives = 62/222 (27%), Gaps = 28/222 (12%)
Query: 1159 TIFMVPGIEGIATVLEPLAKNINAQVLVFQFD--------HTNPPDTIPEMADSLLPHFK 1210
+ P G + + + +V V P DT+ +A+++ +
Sbjct: 53 RLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALE 112
Query: 1211 KRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDS---APDYV------LTS 1261
+ + + L G S G ++A E+A L + G +L S AP S
Sbjct: 113 EHRLTH--DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLS 170
Query: 1262 LRKLPDWNAKLNYFLDLMPEDATHSRTYQRNLAH--AAYKRITSILKYTDPKHKAFGGNI 1319
L + L D A + L A +R Y
Sbjct: 171 DTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACER------YDWHPRPPLDCPT 224
Query: 1320 TLLRPTEQALPTAEDY-GLSKVCKKPVKVHFVDGNHFTVLDN 1360
T + T E + GNHF +
Sbjct: 225 TAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGG 266
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 63.4 bits (155), Expect = 2e-10
Identities = 39/238 (16%), Positives = 87/238 (36%), Gaps = 30/238 (12%)
Query: 529 EMAWEIPDQWTLEDAATV-PCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLAR 587
+I + + E+ A + P + A+ + ++ G+ +LI G+G +G + A+
Sbjct: 146 VWCHKIGNM-SYENGAMLEP--LSVALAGLQR-AGVRLGDPVLI-CGAGPIGLITMLCAK 200
Query: 588 YMDA-EIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLN-S 645
A + T + +F ++ P + + + +++ G + L +
Sbjct: 201 AAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECT 260
Query: 646 LAEEKLQASVRCLAQGGRFLEIG------KFDLANNNMLGMEVFMRETSFHGVMLDNFFF 699
E + A++ + GG+ IG + M +RE + +
Sbjct: 261 GVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPF-------MRASVREVDLQFQ----YRY 309
Query: 700 AEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGK-HIGKVIIKIRD 756
W +++ +D + LV FP + +AF + K KV I+ +
Sbjct: 310 CN-TWPRAIRLVENGLVD---LTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 61.9 bits (151), Expect = 3e-10
Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 14/185 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+K I GG G G +A+ + G V+ SRS + K+ + + L
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRV--LTAARKLAGATGRRCLPL 82
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
+ D+ V+ + +A + G +D + N A + F + + T
Sbjct: 83 SMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFN 142
Query: 899 FDK--YSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAVE 956
+ Y + G V ++ RG A Q + G A + ++ + LAVE
Sbjct: 143 VSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRH--------LAVE 194
Query: 957 WGAVG 961
WG
Sbjct: 195 WGPQN 199
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 62.0 bits (151), Expect = 4e-10
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 839 STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA--------SL 889
++ L+ A G +D + N A +++D + N + E+F+A
Sbjct: 91 DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHF 150
Query: 890 GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+A Y+ S+ G+ + SS + +G+ GQ NY A
Sbjct: 151 ATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAA 195
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 61.1 bits (149), Expect = 6e-10
Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 28/212 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRS--GVKNGYQALRIKIWKSYDVQVL 837
+ I+ GG G G + L+ G+ +V+ SR +K+ L+ + + +V+
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 838 ISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANAT 896
+I E V NL+ + G ++ + N + E+ + + ++A L T
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135
Query: 897 KYFDKY-SRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPG--- 952
Y K + G +V V G + G A RA G+
Sbjct: 136 FYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAA-----------RA-GVYNLTK 183
Query: 953 -LAVEWGAVG-EVGLVA------DMAEDNLEV 976
LA+EW G + VA A +N
Sbjct: 184 SLALEWACSGIRINCVAPGVIYSQTAVENYGS 215
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 59.9 bits (146), Expect = 5e-09
Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 20/248 (8%)
Query: 1117 DVGIQYLM--RTIGDEILANKPVIRLPSLKNNGSTVEEPVGNNNTIFMVPGIEGIATVLE 1174
D+ ++ L TI ++ ++ IF P + G + +
Sbjct: 1020 DLPVKLLFEAPTIAG--IS--AYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQ 1075
Query: 1175 PLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALE 1234
L+ + + + FD + D +K G + L G+S G +A E
Sbjct: 1076 NLSSRLPS-YKLCAFDF----IEEEDRLDRYADLIQKLQPEG--PLTLFGYSAGCSLAFE 1128
Query: 1235 LAIKLEQLGTK-CHLYLVDSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQRNL 1293
A KLE+ G + +VDS ++ L + + +++ + + +
Sbjct: 1129 AAKKLEEQGRIVQRIIMVDSYKKQGVSDLD-GRTVESDVEALMNVNRD---NEALNSEAV 1184
Query: 1294 AHAAYKRITSILKYTD--PKHKAFGGNITLLRPTEQALPTAEDYGLSKVCKKPVKVHFVD 1351
H ++ + Y +I LL + ++
Sbjct: 1185 KHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLASWEEATTGVYRMKRGF 1244
Query: 1352 GNHFTVLD 1359
G H +L
Sbjct: 1245 GTHAEMLQ 1252
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 57.3 bits (139), Expect = 8e-09
Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
N + + G G E+A G + R+ L +I ++ +++
Sbjct: 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRN--GEKLAPLVAEI-EAAGGRIVAR 61
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
+ D E V L A+ P++ + T F + F
Sbjct: 62 SLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVW--EMACWAGF 119
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLA 954
R + G+ + + RG +G + A + + ++ +A
Sbjct: 120 -VSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQS--------MA 170
Query: 955 VEWGAVG 961
E
Sbjct: 171 RELMPKN 177
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 58.0 bits (141), Expect = 8e-09
Identities = 44/234 (18%), Positives = 86/234 (36%), Gaps = 31/234 (13%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAE- 592
+P + LE A +P + T + + ++ G+++ + G G VG ++ A ++ A
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELAN-IKLGDTVCV-IGIGPVGLMSVAGANHLGAGR 193
Query: 593 IFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSL-AEEKL 651
IF + + + + I N ++ + ++K T G+GVD V+ +
Sbjct: 194 IFAVGSRKHCCDIALE---YGATDII-NYKNGDIVEQILKATDGKGVDKVVIAGGDVHTF 249
Query: 652 QASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKA 711
+V+ + G + N N LG + + L
Sbjct: 250 AQAVKMIKPGSD--------IGNVNYLGEGDNI---DIPRSEW-GVGMGHKHIHGGLCPG 297
Query: 712 -------LQKAIDAGAVQP--LVRTIFPE-DKVEEAFRYMA-AGKHIGKVIIKI 754
L + V P LV +F D +E+AF M K + K ++ +
Sbjct: 298 GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 56.4 bits (137), Expect = 1e-08
Identities = 38/162 (23%), Positives = 53/162 (32%), Gaps = 10/162 (6%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G A L GAR L+L SR+ K A RI QV I
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEAAASRIAS-LVSGAQVDIV 63
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
DI + L +A LG D + + F ED++ S + A
Sbjct: 64 AGDIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESY--RLLARSAV 121
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANS 936
R + G+ V SV+ R +
Sbjct: 122 -WVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRL 162
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 54.9 bits (133), Expect = 4e-08
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 17/155 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S K+ + G G G A V GA K+ ++ + Y +
Sbjct: 6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQEQYPFATEVM----------- 53
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ A V + + +D + N A +L+ + + ED+ +
Sbjct: 54 --DVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 111
Query: 899 FDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ G V +S + G + Y
Sbjct: 112 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAY 146
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 53.8 bits (130), Expect = 6e-08
Identities = 25/159 (15%), Positives = 45/159 (28%), Gaps = 31/159 (19%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ G G G + + L + + R DV V
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEKKAEV--ITAGRHSG---------------DVTV--- 41
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
DIT + + ++G VD I + + TPE ++ K
Sbjct: 42 --DITNIDSIKKM---YEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ-IN 95
Query: 900 DKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYGMAN 935
+L G F + + + + MAN
Sbjct: 96 --LVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMAN 132
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 54.0 bits (131), Expect = 8e-08
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 24/187 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K II GG G G +A GA ++V+T R+ K + +++I + + Q+L
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRT--KEKLEEAKLEI-EQFPGQILTV 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ + ++ + K G +D + N A E+ + +N+ + N T Y
Sbjct: 61 QMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFY 120
Query: 899 FDKY-SRTMC--PTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPG--- 952
+ + G + + G + A +A G+
Sbjct: 121 CSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAA-----------KA-GVLAMTK 168
Query: 953 -LAVEWG 958
LAVEWG
Sbjct: 169 TLAVEWG 175
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 53.7 bits (130), Expect = 1e-07
Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 38/198 (19%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
NK+ I+ GG G GL + GA + + RS ++ K + V+
Sbjct: 13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVG--KEFGVKTKAY 69
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ V + + LGP+ G+ A V T EDF
Sbjct: 70 QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 899 FDKY-SRTMCP--TLGQFVVFSSVS-------CGRGNAGQTNY--------GMANSIMER 940
+ ++ G VV SS+S G+ Q Y +
Sbjct: 130 TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKG---- 185
Query: 941 ICEARRAEGLPGLAVEWG 958
LA EW
Sbjct: 186 ------------LAAEWA 191
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 53.3 bits (129), Expect = 2e-07
Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 31/194 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K +I G G G ++A GAR LVL+ R + A R + + + V
Sbjct: 19 DGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDV--SELDAARRALGEQFGTDVHTV 75
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKA 893
D+ L A G +D + N A + + P+ F+A++ P A
Sbjct: 76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAP-A 134
Query: 894 NATKYFDKYSRTMCP--TLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLP 951
+ M G + +S + Y + + GL
Sbjct: 135 LLASAV---GKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKA------------GLV 179
Query: 952 GL----AVEWGAVG 961
A E G G
Sbjct: 180 MATKVLARELGPHG 193
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 52.9 bits (128), Expect = 2e-07
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S K +I G G GL +A+ GA +VL +R + + + + V+VL
Sbjct: 6 SGKVAVITGSSSGIGLAIAEGFAKEGAH-IVLVARQVDR--LHEAARSLKEKFGVRVLEV 62
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ T GV ++ + G D + N A + E + +
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYW--ELLVMAA 120
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMA 934
+ +R + P + G + +S+ + + Y +
Sbjct: 121 V-RLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVT 160
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 53.1 bits (128), Expect = 3e-07
Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 44/246 (17%)
Query: 529 EMAWEIPDQWTLEDAATV-P---CVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAIN 584
+ IP E + P A S + G+G +G +
Sbjct: 133 KYLVRIPRS-QAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFV-LGNGSLGLLTLA 190
Query: 585 LARYMDA---EIFTTVGT---PEKREFIRKTFPFIKEENIG----NSRDTSFEQLVMKRT 634
+ + D ++ + I + + +SR T E +
Sbjct: 191 MLKVDDKGYENLYCLGRRDRPDPTIDIIEE---------LDATYVDSRQTPVEDV---PD 238
Query: 635 KGRGVDLVLN-SLAEEKLQASVRCLAQGGRFLEIG----KFDLANNNMLGMEVFMRETSF 689
+D + + + SV+ LA G +G + E+ + +
Sbjct: 239 VYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKAL 298
Query: 690 HGVMLDNFFFAEQEWKMSLQKALQ-KAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIG 748
G + ++ + + ++ LV + P + E AF I
Sbjct: 299 VGS----VNSHVEHFEAATVTFTKLPKWF---LEDLVTGVHPLSEFEAAFD--DDDTTI- 348
Query: 749 KVIIKI 754
K I+
Sbjct: 349 KTAIEF 354
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 52.6 bits (127), Expect = 4e-07
Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 23/190 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K I GG G G + L GA + V+ SR +A +I +V
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDV--LKATAEQISSQTGNKVHAI 81
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ V N ++E G + + N A + E +P + N T +
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 899 FDK--YSRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPG--- 952
+ + G + +++ G+ A +A G+
Sbjct: 142 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASA-----------KA-GVEAMSK 189
Query: 953 -LAVEWGAVG 961
LA EWG G
Sbjct: 190 SLAAEWGKYG 199
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 52.6 bits (127), Expect = 5e-07
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 54/242 (22%)
Query: 534 IPDQWTLEDAATVPC----VYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYM 589
IPD + E+AA + C Y + GE + I+ G GG+G A+ A+ M
Sbjct: 134 IPDNLSFEEAAPIFCAGVTTYKALKVT-----GAKPGEWVAIY-GIGGLGHVAVQYAKAM 187
Query: 590 DAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLN-SLAE 648
+ EK E ++ + + + N + MK G GV + ++++
Sbjct: 188 GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAK-FMKEKVG-GVHAAVVTAVSK 241
Query: 649 EKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVF---MRETSFHGV----------MLD 695
Q++ + +GG + +G + + +F + G L
Sbjct: 242 PAFQSAYNSIRRGGACVLVG----LPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQ 297
Query: 696 NFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKIR 755
F AE G V+ ++ P +K+ E F M G+ G+V++ +
Sbjct: 298 --FAAE-----------------GKVKTIIEVQ-PLEKINEVFDRMLKGQINGRVVLTLE 337
Query: 756 DE 757
D+
Sbjct: 338 DK 339
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 52.2 bits (126), Expect = 6e-07
Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 60/244 (24%)
Query: 534 IPDQWTLEDAATVPC----VYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYM 589
IP L A + C VY A + G + I +GG+G A+ A+ M
Sbjct: 139 IPQGTDLAQVAPILCAGITVYKALKSA-----NLMAGHWVAISGAAGGLGSLAVQYAKAM 193
Query: 590 DAEIFTTVGTPEKREFIRK-----TFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLN 644
+ G K E R F KE++I V+K T G G V+N
Sbjct: 194 GYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDI--------VGAVLKATDG-GAHGVIN 244
Query: 645 -SLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVF---MRETSFHGV-------- 692
S++E ++AS R + G + +G + +VF ++ S G
Sbjct: 245 VSVSEAAIEASTRYVRANGTTVLVG---MPAGAKCCSDVFNQVVKSISIVGSYVGNRADT 301
Query: 693 --MLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKV 750
LD FFA G V+ ++ + + E + M G+ +G+
Sbjct: 302 REALD--FFAR-----------------GLVKSPIKVV-GLSTLPEIYEKMEKGQIVGRY 341
Query: 751 IIKI 754
++
Sbjct: 342 VVDT 345
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 51.0 bits (123), Expect = 8e-07
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 10/153 (6%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
N+ I+ GG G G ++ + G K+ + + +
Sbjct: 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDID--EKRSADFAKERPNLFYFHG---- 54
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D+ + + A KL +D + N A + + E+F+ L A
Sbjct: 55 -DVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYEL 113
Query: 900 DKY-SRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+ + G+ + +S + Y
Sbjct: 114 SRLCRDELIKNKGRIINIASTRAFQSEPDSEAY 146
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 51.6 bits (124), Expect = 1e-06
Identities = 56/323 (17%), Positives = 108/323 (33%), Gaps = 60/323 (18%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDS-------GKRV--- 511
+++SS+N++D + T K ++I R + + G +++G + S G+ V
Sbjct: 33 DVHWSSLNYKDALAITGK--GKII---RHFPM-IPGIDFAGTVHASEDPRFHAGQEVLLT 86
Query: 512 ---MGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATA---VYAMFICGQMQK 565
+G LA + +P + +A + TA V A+ G +
Sbjct: 87 GWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQ 146
Query: 566 GESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTS 625
+++ SGGVG A+ L + ++ G +++ G +R S
Sbjct: 147 DGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL---------GANRILS 197
Query: 626 FEQLVMKR--TKGR---GVDLV-----LNSLAEEKLQASVRC--LAQGGRF-LEIGKFDL 672
++ R K +D V LA+ V LA G + F L
Sbjct: 198 RDEFAESRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFIL 257
Query: 673 ANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPED 732
N + G++ M + L K + I D
Sbjct: 258 RNVRLQGVDSVM---------------TPPARRAEAWARLVKDLPESFYAQAATEITLAD 302
Query: 733 KVEEAFRYMAAGKHIGKVIIKIR 755
+ + + G+ ++KI+
Sbjct: 303 -APKFADAIINNQVQGRTLVKIK 324
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 51.0 bits (123), Expect = 1e-06
Identities = 48/239 (20%), Positives = 81/239 (33%), Gaps = 54/239 (22%)
Query: 534 IPDQWTLEDAATVPC----VYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYM 589
+PD+ + A + C VY + G+ ++I G GG+G A+ AR M
Sbjct: 136 LPDKVGFVEIAPILCAGVTVYKGLKVT-----DTRPGQWVVIS-GIGGLGHVAVQYARAM 189
Query: 590 DAEIFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLN-SLAE 648
+ K R+ + E N+RDT + K G VL +++
Sbjct: 190 GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKEIG--GAHGVLVTAVSP 243
Query: 649 EKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVF---MRETSFHGV----------MLD 695
+ ++ + +GG G G +F ++ + G LD
Sbjct: 244 KAFSQAIGMVRRGGTIALNG----LPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLD 299
Query: 696 NFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
F A G V+ V T D V + F + GK G+V++
Sbjct: 300 --FAAH-----------------GDVKATVSTA-KLDDVNDVFGRLREGKVEGRVVLDF 338
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 49.9 bits (120), Expect = 2e-06
Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 17/175 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S I+ G G G L LV RG + + + R Q L+ + V+
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRY-----QRLQ-QQELLLGNAVIGI 54
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKA 893
D+ V A G + + + A + T E +
Sbjct: 55 VADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVST-I 113
Query: 894 NATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAE 948
+ R + G S + G A ++ Y + M E+ RAE
Sbjct: 114 LVAQQT---VRLIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAE 165
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/188 (13%), Positives = 54/188 (28%), Gaps = 34/188 (18%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
+K+ ++ GG G G E+ + + + N + I
Sbjct: 22 SKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRENPNADHSFTI-------------- 66
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNA----SLGPKAN 894
+ E + +++ + +K VD A ++ + +L
Sbjct: 67 -KDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFA 125
Query: 895 ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLA 954
+ K G FV+ + + +G YG + I + LA
Sbjct: 126 SAHIGAKLLNQG----GLFVLTGASAALNRTSGMIAYGATKAATHHIIKD--------LA 173
Query: 955 VEWGAVGE 962
E G +
Sbjct: 174 SENGGLPA 181
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 49.9 bits (120), Expect = 2e-06
Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 21/189 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S ++ GG G GL + L+ GA + +R G + ++ + ++ S
Sbjct: 7 SEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAAESALRQ-RFPGARLFAS 64
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ V LG + N A + + F T E ++ L K + +
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIH 124
Query: 899 FDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL--- 953
+ + V +S+ + A RA G+ L
Sbjct: 125 PVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATS-----------AARA-GVKNLVRS 172
Query: 954 -AVEWGAVG 961
A E+ G
Sbjct: 173 MAFEFAPKG 181
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 49.8 bits (120), Expect = 2e-06
Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S K+ ++ G G G D GA LV R + L + + + + +
Sbjct: 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE-----RLLA-EAVAALEAEAIAV 57
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ V + EA + G + G+ + A V AL N E + L +
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFL 117
Query: 899 FDKY-SRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+ + G V+ SV+ G G G +Y
Sbjct: 118 VARKAGEVLEEG-GSLVLTGSVA-GLGAFGLAHY 149
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 49.1 bits (118), Expect = 3e-06
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARK------LVLTSRSGVKNGYQALRIKIWKSYDV 834
+I G G G +A LVL+SR+ + + ++ ++
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT--AADLEKISLEC-RAEGA 58
Query: 835 QVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL---- 889
T DI+ A V L T + G +D + N A V + + T EDF+ ++
Sbjct: 59 LTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNL 118
Query: 890 -----GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+A ++ G +SV+ + + Y
Sbjct: 119 KGTFFLTQA-LFALMERQHS------GHIFFITSVAATKAFRHSSIY 158
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 50.1 bits (120), Expect = 3e-06
Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 73/323 (22%)
Query: 489 RLYQHCVIGFEYSGRLRDSGK------RVMGLT-----------SGRSLANCCET----- 526
+ V+G E G + +S VM + GR + CET
Sbjct: 57 KGKDFLVLGHEAIGVVEESYHGFSQGDLVMPVNRRGCGICRNCLVGRP--DFCETGEFGE 114
Query: 527 ----------------DVEMAWEIPDQWTLEDAATVPCVYATAVYAM------------- 557
D + +IP ++ED + A ++
Sbjct: 115 AGIHKMDGFMREWWYDDPKYLVKIPK--SIEDIGILAQPLADIEKSIEEILEVQKRVPVW 172
Query: 558 FICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFPFIKEEN 617
+L+ G+G +G L R E++ I+E
Sbjct: 173 TCDDGTLNCRKVLV-VGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTV----IEETK 227
Query: 618 IGNSRDTSFEQLVMKRTKGRGVDLVLNS--LAEEKLQASVRCLAQGGRFLEIG---KFDL 672
++ + D+++++ L + L + G G +
Sbjct: 228 TNYYNSSNGYDKLKDSV--GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSV 285
Query: 673 ANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAI-DAGAVQPLVRTIFPE 731
+ E+ + G+ + ++ ++ A + L+
Sbjct: 286 PLDYKTLQEIVHTNKTIIGL----VNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSI 341
Query: 732 DKVEEAFRYMAAGKHIG-KVIIK 753
+ +E + + +H K+ I
Sbjct: 342 NDEKELLKVLREKEHGEIKIRIL 364
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 49.2 bits (118), Expect = 3e-06
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ G G G + D L V+ + + + L+ + Y + DIT
Sbjct: 6 LVTGVSRGIGKSIVDVLFSLDK-DTVVYGVARSEAPLKKLK----EKYGDRFFYVVGDIT 60
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASLGPKANATKYFDKY 902
++ + L+ A G +D + A VL+ + +
Sbjct: 61 EDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 903 S-RTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ + T G V SS +C + YG +
Sbjct: 121 ALPELKKTNGNVVFVSSDACNMYFSSWGAYGSS 153
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 49.6 bits (119), Expect = 3e-06
Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 21/179 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K I+ G G G E+A L GA +V+T+RS K Q + +
Sbjct: 27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS--KETLQKVVSHCLELGAASAHYI 83
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS-----LGPKA 893
+ + +A +G +D + + + S L
Sbjct: 84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSY-V 142
Query: 894 NATKYFDKYSRTMCPTL----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAE 948
T P L G VV SS++ Y + ++ + R E
Sbjct: 143 VLTVAA-------LPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 194
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 49.1 bits (118), Expect = 4e-06
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 8/157 (5%)
Query: 780 SNKSYIICGGLG-GFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLI 838
K ++ G G G A +L GA +V++ + R ++ +V
Sbjct: 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYH--ERRLGETRDQLADLGLGRVEA 77
Query: 839 STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
D+T+ V L+T+ K G +D + N A + + T E+++ L +
Sbjct: 78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVM 137
Query: 898 YFDKY-SRTM--CPTLGQFVVFSSVSCGRGNAGQTNY 931
+ R G V +SV R Q++Y
Sbjct: 138 RATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHY 174
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 49.6 bits (119), Expect = 5e-06
Identities = 35/247 (14%), Positives = 69/247 (27%), Gaps = 36/247 (14%)
Query: 533 EIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAE 592
+ D + + T + G + G ++ + AG+G VG AA AR + A
Sbjct: 154 RDKAMEKIRDLTCLSDILPTGYHGAVTAG-VGPGSTVYV-AGAGPVGLAAAASARLLGAA 211
Query: 593 -IFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVL-------- 643
+ P + + E S DT + + VD +
Sbjct: 212 VVIVGDLNPARLAHAKA----QGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEAR 267
Query: 644 --------NSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLD 695
+ L + ++ G+ G + + + + S
Sbjct: 268 GHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIR---FG 324
Query: 696 NFFFAEQEWKM------SLQKALQKAIDAGAVQP--LVRT-IFPEDKVEEAFRYMAAGKH 746
+ + +AL +AI + +V + D + AG
Sbjct: 325 LGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP 384
Query: 747 IGKVIIK 753
K +I
Sbjct: 385 K-KFVID 390
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 47.9 bits (115), Expect = 7e-06
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 14/159 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K I+ GG G GL LV GA ++LT R+ ++ +R + +V
Sbjct: 7 QGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGRN--ESNIARIREEF----GPRVHAL 59
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
DI + L A LG +D + A V + F+ + ++ N
Sbjct: 60 RSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFA--VNTKGA 117
Query: 899 FDKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYGMA 934
F + + P + G V SSV+ G+ G + Y +
Sbjct: 118 F-FTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSAS 155
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 47.9 bits (115), Expect = 8e-06
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 25/166 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ ++ G G G +A LV GA +++ R I+ + D +
Sbjct: 9 KGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNETIKEIRA-QYPDAILQPV 66
Query: 840 TDDITTEAGVVNLLTEANKLGPVD------GIFNLAVVLKDALFENQTPEDFNASLGPKA 893
D+ TE G +++ K VD GIF + + + ED+ +
Sbjct: 67 VADLGTEQGCQDVI---EKYPKVDILINNLGIF------EPVEYFDIPDEDWFKLF--EV 115
Query: 894 NATKYFDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMA 934
N + +R+ + G+ + +S + + +Y
Sbjct: 116 NIMSGV-RLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSAT 160
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 47.9 bits (115), Expect = 9e-06
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 13/160 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+S ++ GG G G +A GA + + RS A + + +V+
Sbjct: 9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRS--TADIDACVADLDQLGSGKVIGV 65
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ A L A + G +D + A V DA TPE N N
Sbjct: 66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIF--AVNVNGT 123
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVS-CGRGNAGQTNYG 932
F + L G+ V+ SS++ G G ++YG
Sbjct: 124 F-YAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYG 162
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 47.7 bits (114), Expect = 1e-05
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 19/171 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGAR--KLVLTSRSGVKNGYQALRIKIWKSY-DVQV 836
++ G GFG LA L + +++++RS ++ + L+ ++ D++V
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS--ESMLRQLKEELGAQQPDLKV 62
Query: 837 LISTDDITTEAGVVNLLTEANKLGPVDGIFNLAVV--------LKDALFENQTPEDFNAS 888
+++ D+ TEAGV LL+ +L +G+ L ++ + + N
Sbjct: 63 VLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNY 122
Query: 889 L-----GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
T + V SS+ + G Y
Sbjct: 123 WALNLTSM-LCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 44.5 bits (105), Expect = 1e-05
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1012 KKAGSGGATNIVDAVINI----LGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEV 1067
G G + +DAV+ + G+ L+ ++ S A++G+DS+ ++ I + +
Sbjct: 2 MAKGVGVSNEKLDAVMRVVSEESGI-ALEELTDDSNFADMGIDSLSSMVIGSRFREDLGL 60
Query: 1068 FLTPQD 1073
L P+
Sbjct: 61 DLGPEF 66
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 47.6 bits (114), Expect = 1e-05
Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G GG G + L GAR + + R+ V L +
Sbjct: 27 EGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRA-VAGIAADLHLPG----------- 73
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ A L LG +D + N A V+ T D++ SLG N
Sbjct: 74 --DLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLG--VNVEAP 129
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMA 934
F + R P + G V +S R G Y +
Sbjct: 130 F-RICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLT 169
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 47.9 bits (115), Expect = 1e-05
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 21/190 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+++Y++ GG G G +A LV GA +++ R+ K ++ + +
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAGAVQELEALGANGGAIRYE 68
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASLGPKANATK 897
DIT E + G + G+ + A ++ E + ++ N T
Sbjct: 69 PTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM 128
Query: 898 YFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL-- 953
Y K+ +R M G FV SS++ + YG+ S + L
Sbjct: 129 YVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKS------------AVDHLMQ 176
Query: 954 --AVEWGAVG 961
A E GA
Sbjct: 177 LAADELGASW 186
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 48.5 bits (116), Expect = 2e-05
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 839 STDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLG-------- 890
+++ +V T G V I N A +L+DA + T +D+ +
Sbjct: 71 DYNNVLDGDKIVE--TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFA 128
Query: 891 -PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
KA A YF K G+ V SS + GN GQ NY A
Sbjct: 129 VTKA-AWPYFQKQKY------GRIVNTSSPAGLYGNFGQANYASA 166
Score = 48.2 bits (115), Expect = 2e-05
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 839 STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP------ 891
D+ ++ ++ +K G +D + N A +L+D F + +++++
Sbjct: 374 DQHDVAKDSE--AIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTF 431
Query: 892 ---KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ A YF + G+ + +S S GN GQ NY +
Sbjct: 432 NLSRL-AWPYFVEKQF------GRIINITSTSGIYGNFGQANYSSS 470
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 46.4 bits (111), Expect = 2e-05
Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 16/155 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K +I G G G L R ++V TSRS S D +
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKP------------SADPDIHTV 73
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
DI+ ++ E + G +D + N A V F T ED++ +LG +
Sbjct: 74 AGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFH 133
Query: 899 FDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ + M G V ++ + G +
Sbjct: 134 ITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSA 168
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 46.4 bits (111), Expect = 3e-05
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 14/155 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ +Y++ GG G G + + L+ ++ + IK
Sbjct: 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKA----------- 51
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D+T + + N+L K DGIF A +L + E L ++ YF
Sbjct: 52 --DLTKQQDITNVLDII-KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 900 DKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
K V S C Y ++
Sbjct: 109 IKGLENNLKVGASIVFNGSDQCFIAKPNSFAYTLS 143
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
SNK+ II G G G A GA + +T RS + I + QV
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSV 63
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALF----ENQTPEDFNASL----- 889
D+TTE G ++ + G +D + N A F +Q + ++ +L
Sbjct: 64 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 123
Query: 890 GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCG-RGNAGQTNYGMA 934
TK + + + G+ V SS+ G + Y +A
Sbjct: 124 AV-IEMTKKVKPH---LVASKGEIVNVSSIVAGPQAQPDFLYYAIA 165
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 46.1 bits (110), Expect = 3e-05
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G GL +A L +GA +VL G + +R + + V+VL
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF-GDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKA 893
D++ V L+ A ++G +D + N A + AL E+ E ++A L
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAV-F 119
Query: 894 NATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ T M G+ + +S +A ++ Y
Sbjct: 120 HGTAAA---LPHMKKQGFGRIINIASAHGLVASANKSAY 155
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 46.0 bits (110), Expect = 4e-05
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K +I G G G +A A K+V+ RS ++ +I K + +
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEA-NSVLEEI-KKVGGEAIAV 62
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFN---------ASL 889
D+T E+ V+NL+ A + G +D + N A + + D+N A L
Sbjct: 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122
Query: 890 GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
G + A KYF + G + SSV +Y
Sbjct: 123 GSRE-AIKYFVENDIK-----GTVINMSSVHEKIPWPLFVHY 158
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 46.1 bits (110), Expect = 4e-05
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 13/159 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ +I G G GL +A L GA +VL G + + + ++ VL
Sbjct: 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF-GAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKA 893
D+T + + +++ ++ G D + N A V E+ E ++ +
Sbjct: 82 PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSS-F 140
Query: 894 NATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ + M G+ + +S + ++ Y
Sbjct: 141 HTIRGA---IPPMKKKGWGRIINIASAHGLVASPFKSAY 176
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 45.6 bits (109), Expect = 5e-05
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 31/193 (16%)
Query: 788 GGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDITTEA 847
G G G+E A GA + +T S + + ++ ++ K+Y ++ + +
Sbjct: 29 SGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVK-ELEKTYGIKAKAYKCQVDSYE 86
Query: 848 GVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKY-SRT 905
L+ + G +D A D+ + + E +N + N T + K
Sbjct: 87 SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHH 146
Query: 906 MCPT-LGQFVVFSSVSCGRGN--AGQTNY--------GMANSIMERICEARRAEGLPGLA 954
G V+ +S+S N QT+Y MA S LA
Sbjct: 147 FKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARS----------------LA 190
Query: 955 VEWGAVGEVGLVA 967
EW V ++
Sbjct: 191 NEWRDFARVNSIS 203
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 46.7 bits (111), Expect = 5e-05
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLV-----LTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++ G G G E A RGA+ +V S G + + + + +
Sbjct: 23 VVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVAD 82
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNA--------SLGP 891
+ + A V+ T G VD + N A +L+D + +D+N S
Sbjct: 83 YNSVIDGAKVIE--TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKC 140
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
A Y K + G+ ++ SS S GN GQ NY A
Sbjct: 141 TQAAFPYMKKQNY------GRIIMTSSNSGIYGNFGQVNYTAA 177
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 45.7 bits (109), Expect = 5e-05
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S + ++ G G G +A L GA ++VLT+R +A+ +I + +
Sbjct: 28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARD--VEKLRAVEREI-VAAGGEAESH 83
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASL-------- 889
D++ + T G D + N A V P +++A +
Sbjct: 84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY 143
Query: 890 -GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+A ++ G + SS++ A Y
Sbjct: 144 LLLRA-FAPAMIA-AKR-----GHIINISSLAGKNPVADGAAY 179
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 45.7 bits (109), Expect = 5e-05
Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S +S ++ GG G G +A GA + + +RS ++ ++ + V+
Sbjct: 40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARS--PRELSSVTAELGELGAGNVIGV 96
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ + + G +D + A + +A + TPE + L N
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVL--DVNVKGT 154
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVS-CGRGNAGQTNYG 932
+ L G+ ++ SS++ G G ++YG
Sbjct: 155 V-YTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYG 193
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 45.2 bits (108), Expect = 6e-05
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+K +I GG G G +A+ + GA + + A+R + V+
Sbjct: 6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKC--- 61
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ V + + G D + N A + F+ T E + + N
Sbjct: 62 --DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFE--INVDSG 117
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F ++ P + G+ + +S + T+Y
Sbjct: 118 F-LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHY 154
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 45.2 bits (108), Expect = 6e-05
Identities = 36/189 (19%), Positives = 58/189 (30%), Gaps = 30/189 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S ++ G G G + L GA+ +V +R+ + +L + V V
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRT--NSDLVSLAKECPGIEPVCV--- 59
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D+ L +GPVD + N A ++ F T E F+ S +
Sbjct: 60 --DLGDWDATEKAL---GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQV 114
Query: 900 DKY-SRTMCP--TLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL--- 953
+ +R M G V SS+ Y + L
Sbjct: 115 SQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKG------------AMTMLTKA 162
Query: 954 -AVEWGAVG 961
A+E G
Sbjct: 163 MAMELGPHK 171
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 45.7 bits (109), Expect = 6e-05
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 9/157 (5%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++ ++ G G GLE+A L G R + + +R + G + ++ + V+
Sbjct: 21 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARG--EEGLRTTLKEL-REAGVEADGR 76
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA----SLGPKAN 894
T D+ + + L+ + GPVD + N A E + +L
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 136
Query: 895 ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
TK K + G+ V +S +G Y
Sbjct: 137 VTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPY 173
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 45.2 bits (108), Expect = 7e-05
Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 24/186 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ + ++ G G G L GAR +V SR+ + +L + V V
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRT--QADLDSLVRECPGIEPVCV--- 59
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D+ L +GPVD + N A V F T E F+ S A
Sbjct: 60 --DLGDWEATERAL---GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQV 114
Query: 900 DKY-SRTMCP--TLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLP-GLAV 955
+ +R + G V SS R + Y + + L +A+
Sbjct: 115 SQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGAL---------DMLTKVMAL 165
Query: 956 EWGAVG 961
E G
Sbjct: 166 ELGPHK 171
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 45.7 bits (109), Expect = 8e-05
Identities = 32/247 (12%), Positives = 70/247 (28%), Gaps = 36/247 (14%)
Query: 533 EIPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAE 592
+ ++D + + T + G ++ G + I AG+G VG+ A AR + A
Sbjct: 154 KEQAMEKIKDLTLISDILPTGFHGCVSAG-VKPGSHVYI-AGAGPVGRCAAAGARLLGAA 211
Query: 593 -IFTTVGTPEKREFIRKTFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVL-------- 643
+ PE+ + + E I + + VD +
Sbjct: 212 CVIVGDQNPERLKLLSD----AGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAH 267
Query: 644 -------NSLAEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDN 696
L + + GG G + ++ + + +
Sbjct: 268 GLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLD---FGK 324
Query: 697 FFFAEQEWKM------SLQKALQKAIDAGAVQPLVRTI----FPEDKVEEAFRYMAAGKH 746
+ + + L +AI + L + + D+ + + G
Sbjct: 325 MWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP 384
Query: 747 IGKVIIK 753
K +I
Sbjct: 385 A-KFVID 390
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 45.2 bits (108), Expect = 8e-05
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 7/158 (4%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++K +I G G LA +GA LVL +R+ + + ++ + L
Sbjct: 10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAART--VERLEDVAKQV-TDTGRRALSV 65
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATK 897
DIT +A V +L+ E G VD + N A V F N T E ++
Sbjct: 66 GTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGAL 125
Query: 898 YFDKY-SRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ + + + G V +S+ A Y MA
Sbjct: 126 RLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKMA 163
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 44.9 bits (107), Expect = 8e-05
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K II G G G A GA K+ +T R + +I + V
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSV 63
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFN----LAVVLKDALFENQTPEDFNASLGP--K 892
D+TT+AG +L+ K G +D + N + Q+ E ++A+L +
Sbjct: 64 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 123
Query: 893 A--NATKYFDKYSRTMCPTLGQFVVFSSVSCG-RGNAGQTNYGMA 934
+ TK + + T G+ V SS++ G Y +A
Sbjct: 124 SVIALTKKAVPH---LSSTKGEIVNISSIASGLHATPDFPYYSIA 165
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 45.2 bits (108), Expect = 8e-05
Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 40/225 (17%)
Query: 552 TAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRKTFP 611
TA + ++GE++ + A SG VGQ LA+ M + + G+ EK + ++ F
Sbjct: 142 TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG 201
Query: 612 F---I---KEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQGGRFL 665
F +E ++ L KR G+D+ ++ + L A + + GR
Sbjct: 202 FDDAFNYKEESDLT-------AAL--KRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIA 252
Query: 666 EIGKFDLANN-------NMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSLQKALQKAIDA 718
G N N+ + + G ++ +F+ ++ + + I
Sbjct: 253 VCGMISQYNLENQEGVHNL--SNIIYKRNRIQGFVVSDFYDKYSKF----LEFVLPHIRE 306
Query: 719 GAVQPLVRTIFPEDKVE------EAFRYMAAGKHIGKVIIKIRDE 757
G + + ED + EA + GK++GK ++ + E
Sbjct: 307 GKIT------YVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 45.4 bits (108), Expect = 8e-05
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 839 STDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNA--------SLG 890
+ D + +V T + G +D + N A +L+D F + ED++ S
Sbjct: 72 NYDSVEAGEKLVK--TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQ 129
Query: 891 PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
A + K + G+ ++ +S S GN GQ NY A
Sbjct: 130 VTRAAWDHMKKQNY------GRIIMTASASGIYGNFGQANYSAA 167
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 44.8 bits (107), Expect = 8e-05
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 18/164 (10%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
+K ++ GG G G +++ L G + + + I ++ D + +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLI-EAADQKAVFVG 59
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS---------LG 890
D+T +A + + EA KLG D + N A + + T ED G
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 891 PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+A A++ FD+ G+ + +S++ +G + Y
Sbjct: 120 IQA-ASRKFDELGVK-----GKIINAASIAAIQGFPILSAYSTT 157
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 44.9 bits (107), Expect = 9e-05
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKS--YDVQVL 837
S KS II G G G A GA ++ +T R+ ++ + + +I K+ ++
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN--EDRLEETKQQILKAGVPAEKIN 81
Query: 838 ISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLA--VVLKDALFENQTPEDFNASLGPKAN 894
D+T +G +++ K G +D + N A + +Q E + + K N
Sbjct: 82 AVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTF--KLN 139
Query: 895 ATKYFD--KY-SRTMCPTLGQFVVFSSVSCG-RGNAGQTNYGMA 934
+ + + T G+ V SS+ G + ++G Y A
Sbjct: 140 FQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACA 183
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 44.5 bits (106), Expect = 1e-04
Identities = 31/162 (19%), Positives = 49/162 (30%), Gaps = 19/162 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
II G G G +A L G ++VL +RS I + + ++
Sbjct: 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVL 64
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL--------- 889
DIT + + K G VD + N A + D ++F +
Sbjct: 65 PLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPV-DNFRKIMEINVIAQYG 123
Query: 890 GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
K T+ G +S + G A Y
Sbjct: 124 ILKT-VTEIMKVQKN------GYIFNVASRAAKYGFADGGIY 158
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 44.4 bits (106), Expect = 1e-04
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G +A+ L G+ +++T S +A+ +I Y V+
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTS--GERAKAVAEEIANKYGVKAHGV 62
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
++ +E + E N + +D + N A + +D LF + D+ L K N T
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVL--KVNLTGT 120
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F ++ + G+ V SSV GN GQ NY
Sbjct: 121 F-LVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNY 157
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 44.4 bits (106), Expect = 1e-04
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++ I+ G G G +A GA +V+T G +A+ I + + +
Sbjct: 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLK--SEGAEAVAAAI-RQAGGKAIGL 66
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
++T E ++ A ++ G + + N A F+ DF + N
Sbjct: 67 ECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFD-MPMSDFEWAFK--LNLFSL 123
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYG 932
F + S+ P + G + SS++ N +YG
Sbjct: 124 F-RLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYG 161
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 44.5 bits (106), Expect = 1e-04
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 9/157 (5%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++ + G G GL +A L RG + +R A + ++ V S
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARD--AKNVSAAVDGL-RAAGHDVDGS 78
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA----SLGPKAN 894
+ D+T+ V + A + GP+ + N A + + +L
Sbjct: 79 SCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFR 138
Query: 895 ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
T+ + G+ V +S +G Y
Sbjct: 139 VTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPY 175
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 44.1 bits (105), Expect = 1e-04
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 19/103 (18%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP---- 891
D++ A V L A G VD + N A ++ F+ + G
Sbjct: 85 DVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTL 144
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ A + R + S+ G + Y A
Sbjct: 145 RE-AAQRLRVGGR--------IINMSTSQVGLLHPSYGIYAAA 178
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 44.1 bits (105), Expect = 1e-04
Identities = 46/176 (26%), Positives = 67/176 (38%), Gaps = 40/176 (22%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK----NGYQALRIKIWKSYDVQ 835
++S ++ GG G GL +A G K+ +T RSG +
Sbjct: 20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEGFLAVKC------------ 66
Query: 836 VLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKAN 894
DIT V E GPV+ + A V KD L + EDF + + + N
Sbjct: 67 ------DITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVV--ETN 118
Query: 895 ATKYFDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY--------GMANSI 937
T F + + + G+ V+ SSV G+AGQ NY G A S+
Sbjct: 119 LTGTF-RVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSL 173
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 43.7 bits (104), Expect = 1e-04
Identities = 34/174 (19%), Positives = 49/174 (28%), Gaps = 36/174 (20%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
+I G GG G A L+G L+L+ R L + + L D+
Sbjct: 4 LITGATGGLGGAFA--RALKGHD-LLLSGRRAGA--LAELA----REVGARAL--PADLA 52
Query: 845 TEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKANATKYF 899
E LL EA GP+D + + A + L
Sbjct: 53 DELEAKALLEEA---GPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAF------ 103
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAE 948
+ + V F + G Y A +E EA R E
Sbjct: 104 ------VLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKE 151
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 44.1 bits (105), Expect = 2e-04
Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 30/171 (17%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++S ++ GG G GL +A L G K+ +T R +++
Sbjct: 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPK-GLFGVEV----------- 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+T V T GPV+ + + A + DA T E F + AN T
Sbjct: 61 --DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVI--NANLTGA 116
Query: 899 FD---KYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY--------GMANSI 937
F + SR+M G+ + SVS G Q NY GMA SI
Sbjct: 117 FRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSI 167
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 44.1 bits (105), Expect = 2e-04
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S + + GG+GG G + L G R V+ K+ S
Sbjct: 12 SQRIAYVTGGMGGIGTSICQRLHKDGFR--VVAGCGPNSPRRVKWLEDQ-KALGFDFYAS 68
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA----SLGPKAN 894
++ + ++G +D + N A + +D +F T ED+ A +L N
Sbjct: 69 EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFN 128
Query: 895 ATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
TK M G+ + SSV+ +G GQTNY
Sbjct: 129 VTKQV---IDGMVERGWGRIINISSVNGQKGQFGQTNY 163
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 44.0 bits (105), Expect = 2e-04
Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 30/193 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ ++ GG G G + + GA + +R+ + W+ QV S
Sbjct: 13 KAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARN--EYELNECL-SKWQKKGFQVTGS 68
Query: 840 TDDITTEAGVVNLLTEANKL--GPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
D + L+ + + G +D + N ++ + T EDF+ + N
Sbjct: 69 VCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHIS--TNLES 126
Query: 898 YFDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPG 952
+ S+ P L G + SS++ + + Y L
Sbjct: 127 AY-HLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKG------------ALNQ 173
Query: 953 L----AVEWGAVG 961
L A EW + G
Sbjct: 174 LARNLACEWASDG 186
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 43.6 bits (104), Expect = 2e-04
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 13/158 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K ++ G G G E+A L +GA +V T+ S + + + K +
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATS--QASAEKFENSM-KEKGFKARGL 59
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
+I+ + N E + +D + N A + +D L + +++ + + N +
Sbjct: 60 VLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVI--NTNLSSI 117
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F + S+ + G+ + SV GN GQTNY
Sbjct: 118 F-RMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNY 154
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 43.7 bits (104), Expect = 2e-04
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S + I+ GG G G +A L GA + + + ++ + V+V
Sbjct: 11 SGRKAIVTGGSKGIGAAIARALDKAGAT-VAIADLDVMAAQAVVAGLEN-GGFAVEV--- 65
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+T A V + +A + LG D + A V + T E+++ + A
Sbjct: 66 --DVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123
Query: 899 FDKY-SRTMCP--TLGQFVVFSSVSCGRGNAGQTNY 931
++ R T G V +S++ G +Y
Sbjct: 124 ANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHY 159
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 43.7 bits (104), Expect = 2e-04
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
NK ++ G G G E+A L + ++ SR+ + ++ +I KS+ +
Sbjct: 44 NKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT--QKSCDSVVDEI-KSFGYESSGYA 99
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D++ + + ++ + + VD + N A + +D LF +++ L + N F
Sbjct: 100 GDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVL--RTNLNSLF 157
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
++ + + G+ + SS+ GN GQ NY
Sbjct: 158 -YITQPISKRMINNRYGRIINISSIVGLTGNVGQANY 193
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 43.7 bits (104), Expect = 2e-04
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 34/191 (17%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
+I G G G ++A GA ++ + +R A I + L D+T
Sbjct: 36 LITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIA---GVGGKALPIRCDVT 91
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKY- 902
V +L + +LG +D A ++ + E+F +
Sbjct: 92 QPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAA 151
Query: 903 SRTMCP--TLGQFVVFSSVSCGRGNAGQ--TNY--------GMANSIMERICEARRAEGL 950
+R M G + +S+S N Q ++Y + +
Sbjct: 152 ARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKA-------------- 197
Query: 951 PGLAVEWGAVG 961
+AVE
Sbjct: 198 --MAVELAPHQ 206
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 43.7 bits (104), Expect = 2e-04
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ + ++ G GG G +A +GA + L ++ + + V +
Sbjct: 26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTR--EDKLKEIA----ADLGKDVFVF 78
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
+ +++ + L A ++ +D + N A + +D LF +D++ L N T
Sbjct: 79 SANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVL--AVNLTAA 136
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
+R + ++ G+ + +S+ GN GQTNY
Sbjct: 137 S-TLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNY 173
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 43.7 bits (104), Expect = 2e-04
Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 35/199 (17%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K + G GG G +A+ GA + + S + + K+Y V
Sbjct: 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAE---HLQKTYGVHSKAY 88
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA--VVLKDALFENQTPEDFNASLGPKANAT 896
+I+ V +++ G +D A + + + +N + N
Sbjct: 89 KCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGV 148
Query: 897 KYFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAG--QTNY--------GMANSIMERICEA 944
Y + G ++ SS+S N Q Y +A S
Sbjct: 149 YYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKS-------- 200
Query: 945 RRAEGLPGLAVEWGAVGEV 963
LA+EW V
Sbjct: 201 --------LAIEWAPFARV 211
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 43.3 bits (103), Expect = 3e-04
Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 20/161 (12%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
K ++ G G G +A LV G + + + A I +
Sbjct: 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEIN---QAGGHAVAVK 57
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS---------LG 890
D++ V + +A LG D I N A V E+ TPE + G
Sbjct: 58 VDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWG 117
Query: 891 PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+A A + F K G+ + S + GN Y
Sbjct: 118 IQA-AVEAFKKEGHG-----GKIINACSQAGHVGNPELAVY 152
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 43.2 bits (103), Expect = 3e-04
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ G G G +A L G + LV +RS + + +I ++Y Q + D++
Sbjct: 5 VVTGASRGIGKAIALSLGKAGCKVLVNYARS--AKAAEEVSKQI-EAYGGQAITFGGDVS 61
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKYS 903
EA V ++ A + G +D + N A + +D L ++ + N T F +
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVI--DLNLTGVF-LCT 118
Query: 904 RTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
+ + G+ + +SV GN GQ NY
Sbjct: 119 QAATKIMMKKRKGRIINIASVVGLIGNIGQANY 151
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 43.3 bits (103), Expect = 3e-04
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 25/163 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVL-TSRSGVKNGYQALRIKIWKSYDVQVLI 838
+ K+ ++ G G G +A L GA +V + G K ++ +
Sbjct: 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--------GKKARA 56
Query: 839 STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLG------- 890
DI+ V L E G +D + N A ++ +++ + + +
Sbjct: 57 IAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTF 116
Query: 891 --PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+A T + G+ + +S + G Y
Sbjct: 117 IVTRA-GTDQMRAAGKA-----GRVISIASNTFFAGTPNMAAY 153
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 43.5 bits (103), Expect = 3e-04
Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDS-------GKRV--- 511
++ YS IN++D + A ++ R Y ++G + +G + S G V
Sbjct: 37 KVAYSGINYKDGLAGKAG--GNIV---REYPL-ILGIDAAGTVVSSNDPRFAEGDEVIAT 90
Query: 512 ---MGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATAVYAMFI---CGQMQK 565
+G++ L+ + +P +L++A TA ++ G +
Sbjct: 91 SYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPE 150
Query: 566 GESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRK 608
S+L+ +GGVG A+++ ++ + G E +++++
Sbjct: 151 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ 193
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 43.3 bits (103), Expect = 3e-04
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+++ ++ G G G +A L GA+ V + S + I + +
Sbjct: 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS--AGAADEVVAAI-AAAGGEAFAV 83
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D++ E+ V L + G +D + N A + +D L +D+ + L N
Sbjct: 84 KADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVL--DLNLGGV 141
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F SR + G+ + +SV GN GQ NY
Sbjct: 142 F-LCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANY 178
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 43.4 bits (103), Expect = 3e-04
Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 462 QIYYSSINFRDIMLTTAKLAPEVIESRRLYQHCVIGFEYSGRLRDS-------GKRV--- 511
+++YSS+N++D + + +++ + Y V G + +G + S G V
Sbjct: 36 RVHYSSVNYKDGLASIPD--GKIV---KTYPF-VPGIDLAGVVVSSQHPRFREGDEVIAT 89
Query: 512 ---MGLTSGRSLANCCETDVEMAWEIPDQWTLEDAATVPCVYATA---VYAMFICGQMQK 565
+G+T + E +P TL++A + TA ++ + G +
Sbjct: 90 GYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPE 149
Query: 566 GESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRK 608
+L+ +GGVG A+++ + + G + +++R
Sbjct: 150 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV 192
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 43.3 bits (103), Expect = 3e-04
Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ + + GG+GG G ++ L G V S S + + +
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMA--VAVSHSERNDHVSTWLMHE-RDAGRDFKAY 80
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA----SLGPKAN 894
D+ + G VD + N A + +DA F T D++A L N
Sbjct: 81 AVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFN 140
Query: 895 ATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
TK F M G+ V SV+ RG GQ NY
Sbjct: 141 VTKQF---IAGMVERRFGRIVNIGSVNGSRGAFGQANY 175
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 43.5 bits (103), Expect = 3e-04
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 28/169 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLT--SRSGVKNGYQALRIKIWKSYDVQVL 837
++ ++ GG G GL A RGAR LVL+ + ++ LR
Sbjct: 30 DGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQAVNGLR-----GQGFDAH 83
Query: 838 ISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP 891
D+ +V L EA LG VD +F+ A ++ +D+ + G
Sbjct: 84 GVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGS 143
Query: 892 KANATKYFDKYSRTMCPTL------GQFVVFSSVSCGRGNAGQTNYGMA 934
+A + F P L G +S + NAG YG+A
Sbjct: 144 -IHAVEAF-------LPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVA 184
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function,
ATC, S genomics, PSI-2, protein structure initiative; NMR
{Agrobacterium tumefaciens} SCOP: a.28.1.1
Length = 105
Score = 40.3 bits (94), Expect = 4e-04
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 1020 TNIVDAVINILG-----LRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDI 1074
++ + IL + T++ + L G+ S +V++ +E F++ +
Sbjct: 21 GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80
Query: 1075 RGLTFAKLQDIA 1086
+FA ++ I
Sbjct: 81 NRKSFASIKAIE 92
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 42.9 bits (102), Expect = 4e-04
Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 21/159 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVL-TSRSGVKNGYQALRIKIWKSYDVQVLI 838
+K+ +I G G G + GAR + ++ +A+
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVM------- 56
Query: 839 STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
D+ A V EA LG +DG+ + A + +D ED+ L + N T
Sbjct: 57 ---DVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVL--RVNLTG 111
Query: 898 YFDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F ++ + G V+ +S GN GQ NY
Sbjct: 112 SF-LVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANY 148
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 42.6 bits (101), Expect = 4e-04
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 1194 PPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKL-EQLGTKCHLYLVD 1252
++ +MA+++L + +G+S GG+VA ++A+ E++ L V
Sbjct: 57 GALSLADMAEAVLQQAPDK-AI------WLGWSLGGLVASQIALTHPERVR---ALVTVA 106
Query: 1253 SAPDYV 1258
S+P +
Sbjct: 107 SSPCFS 112
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 42.8 bits (102), Expect = 4e-04
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ I+ G G G +A L GA ++ S + A + K+ + V+++
Sbjct: 4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA--STSLDATAEEF-KAAGINVVVA 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ V N++ A + G +D + N A + +D L + +D++ L N
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVL--NTNLKSA 118
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
+ ++ + + G+ + +S++ GNAGQ NY
Sbjct: 119 Y-LCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANY 155
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 42.9 bits (102), Expect = 4e-04
Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 24/190 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ GG G G + + L GAR + SR+ K + L I W+ + V S
Sbjct: 20 KGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNE-KELDECLEI--WREKGLNVEGS 75
Query: 840 TDDITTEAGVVNLLTEANKL--GPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
D+ + L+ + G ++ + N A V+ ++ T +D+N +G A
Sbjct: 76 VCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY 135
Query: 898 YFDKY-SRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL-- 953
+ + + + V+F SS++ + Y + + +
Sbjct: 136 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKG------------AINQMTK 183
Query: 954 --AVEWGAVG 961
A EW
Sbjct: 184 SLACEWAKDN 193
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 42.5 bits (101), Expect = 4e-04
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
KS ++ G G G +A L G V + S K +A+ +I K+ V
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS--KEKAEAVVEEI-KAKGVDSFAI 59
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
++ V ++ E ++ G +D + N A + +D L ++++ + N
Sbjct: 60 QANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVI--DTNLKGV 117
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F + P + G + SSV GN GQ NY
Sbjct: 118 F-NCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANY 154
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 42.5 bits (101), Expect = 4e-04
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G +A L +GA +V + + + + +I K +
Sbjct: 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGN--EQKANEVVDEI-KKLGSDAIAV 59
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ V N++ + + G VD + N A V KD L E+++ + N
Sbjct: 60 RADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVI--NTNLKGV 117
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F ++ + + G+ V +SV GN GQ NY
Sbjct: 118 F-LCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANY 154
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 42.8 bits (101), Expect = 4e-04
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQVLVFQFDHTN-------PPDTIPEMADSLLP 1207
NN+ I +V G+ G L LA+++ + Q D N P P MA L+
Sbjct: 14 HNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPAMAQDLVD 73
Query: 1208 HFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAP-DYVLTSLRKLP 1266
D+ +G S GG + L K L +D AP DY + ++
Sbjct: 74 TLDA---LQIDKATFIGHSMGGKAVMALTALAPDRIDK--LVAIDIAPVDYHVRRHDEIF 128
Query: 1267 DWNAKLN 1273
++
Sbjct: 129 AAINAVS 135
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 42.5 bits (101), Expect = 5e-04
Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 37/169 (21%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-------GYQALRIKIWKSY 832
KS +I G G G A+ V GA + + + G A +++
Sbjct: 7 EGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQAAAEIGPAAYAVQM---- 61
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS--- 888
D+T + + + G +D + N A + A T E +
Sbjct: 62 ---------DVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAI 112
Query: 889 ------LGPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+A A + R G+ + +S + RG A Y
Sbjct: 113 NVAGTLFTLQA-AARQMIAQGRG-----GKIINMASQAGRRGEALVAIY 155
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 41.6 bits (98), Expect = 5e-04
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 1158 NTIFMVPGIEGIATVLEPLAKNINAQ----VLVFQFDHTNPPDTIPEMADSLLPHFKKRL 1213
N + MV GI G + + + +Q ++ D + T L +K L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 1214 -VHGTDEIKLVGFSFGGMVALELAIKL 1239
G ++ +V S GG L L
Sbjct: 64 DETGAKKVDIVAHSMGGANTLYYIKNL 90
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 42.3 bits (100), Expect = 6e-04
Identities = 24/185 (12%), Positives = 51/185 (27%), Gaps = 26/185 (14%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ GG G G R + + ++ +K ++
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEEASASVIVK----------MT 54
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATKY 898
V + + VD I +A ++ + K +
Sbjct: 55 DSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMW--KQSIWTS 112
Query: 899 FDKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGLAV 955
S L G + + + G G YGMA + ++C++ LA
Sbjct: 113 T-ISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQS--------LAG 163
Query: 956 EWGAV 960
+ +
Sbjct: 164 KNSGM 168
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 42.1 bits (100), Expect = 6e-04
Identities = 29/173 (16%), Positives = 48/173 (27%), Gaps = 33/173 (19%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSG----------VKNGYQALRIKIW 829
+ ++ G G G A GA +VL R+ G I
Sbjct: 13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 830 KSYDVQVLISTDDITTEAGVVNLLTEANK-LGPVDGIFNLAVVLKD-ALFENQTPEDFNA 887
+ T L G +DG+ + A ++ E EDF
Sbjct: 72 NL----------ENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQ 121
Query: 888 SL-----GPKANATKYFDKYSRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMA 934
+ T+ + + + F SS +G A YG++
Sbjct: 122 VMHVNVNAT-FMLTRALL---PLLKRSEDASIAFTSSSVGRKGRANWGAYGVS 170
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 42.1 bits (100), Expect = 6e-04
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 20/164 (12%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
NK ++ G G G A L G ++ +RS K +I + V+VL+
Sbjct: 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS--KKAALETAEEI-EKLGVKVLVVK 60
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP--- 891
++ A + + + G +D N A ++ ++
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 892 -KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ A K +K G V SS+ R T G++
Sbjct: 121 AQE-AAKLMEKNGG------GHIVSISSLGSIRYLENYTTVGVS 157
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 39.5 bits (92), Expect = 6e-04
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDI 1074
++ DL LG DS+ + +ER++ V L +
Sbjct: 12 LLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAV 64
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 42.1 bits (100), Expect = 6e-04
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 20/165 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
NK +I GG+ G A L ++ ++ + L+ ++ + +V +
Sbjct: 10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDEL-EDQGAKVALY 68
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP-- 891
D++ E V L A + G VD N + + +F+A
Sbjct: 69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYF 128
Query: 892 --KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
K A K+ + + ++ + Y
Sbjct: 129 FIKQ-AAKHMNPNGH--------IITIATSLLAAYTGFYSTYAGN 164
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 41.8 bits (99), Expect = 7e-04
Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 27/178 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G GG G+E+ L + R+ AL V
Sbjct: 4 KKKIAVVTGATGGMGIEIVKDLSRDHI--VYALGRN--PEHLAALAEIE------GVEPI 53
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKAN 894
DI E + + L VD + + A V +D E + +++A L P A
Sbjct: 54 ESDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVP-AE 112
Query: 895 ATKYFDKYSRTMCPTL----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAE 948
+ R + P L G + +S + + G T Y + + + +A R E
Sbjct: 113 LS-------RQLLPALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKE 163
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 42.5 bits (101), Expect = 7e-04
Identities = 44/237 (18%), Positives = 76/237 (32%), Gaps = 41/237 (17%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
+ +E + C T A ++ S + G+G VG +A+ A+ A I
Sbjct: 159 VTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVT-WGAGAVGLSALLAAKVCGASI 217
Query: 594 FTTVGT-PEKREFIRK---TFPFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLA-E 648
V + E ++ T I NS+ + + T G GV+ L S
Sbjct: 218 IIAVDIVESRLELAKQLGAT-HVI------NSKTQDPVAAIKEITDG-GVNFALESTGSP 269
Query: 649 EKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMSL 708
E L+ V L G+ +G F + + +
Sbjct: 270 EILKQGVDALGILGKIAVVG---APQLGT--------TAQFDVN---DLLLGGKTILGVV 315
Query: 709 ------QKALQKAID---AGA--VQPLVRTIFPEDKVEEAFRYMAAGKHIGKVIIKI 754
+K + + + G LV+ D++ +A G + K IIKI
Sbjct: 316 EGSGSPKKFIPELVRLYQQGKFPFDQLVKFY-AFDEINQAAIDSRKGITL-KPIIKI 370
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 42.2 bits (100), Expect = 7e-04
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ GG G G +A L G +V+T R + A +I V
Sbjct: 32 EGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRR--PDVLDAAAGEIGGRTGNIVRAV 88
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDAL-FENQTPEDFNASL-----GPK 892
D+ V L + +D + N A + E T E +N + G
Sbjct: 89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGA- 147
Query: 893 ANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
T++ + + P G+ + S+S Y
Sbjct: 148 FLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPY 186
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 41.8 bits (99), Expect = 8e-04
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+K I+ G G G +A+ V G+ K++ S + I+
Sbjct: 7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHD-PGEAKYDHIEC----------- 53
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+T V + + G + + N A + E+ + ++ + Y
Sbjct: 54 --DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYY 111
Query: 899 FDKY-SRTMCPTLGQFVV-FSSVSCGRGNAGQTNYGMA 934
K+ M + +V SSV + Y +
Sbjct: 112 ASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTS 149
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 38.9 bits (91), Expect = 8e-04
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTP 1071
++D L + D + + + ++S A+ + LE+ L P
Sbjct: 19 LIDQFAQQLDV-DPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNP 67
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 41.8 bits (99), Expect = 8e-04
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ I+ G G G +A L RGA ++ T+ + + G + + K ++ +
Sbjct: 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATT--EAGAEGIGAAF-KQAGLEGRGA 82
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
++ V L+ + G ++ + N A + +D L ++++A + N
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVI--DTNLKAV 140
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F + SR + + G+ V +SV GN GQ NY
Sbjct: 141 F-RLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNY 177
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 41.7 bits (99), Expect = 8e-04
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G +A+ L RGA K++ T+ S ++G QA+
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATS--ESGAQAIS----DYLGDNGKGM 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
++T + +L ++ G VD + N A + +D L E+++ + + N T
Sbjct: 61 ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIM--ETNLTSI 118
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
F + S+ + + G+ + SV GNAGQ NY
Sbjct: 119 F-RLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANY 155
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 41.4 bits (98), Expect = 0.001
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 32/168 (19%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
+S ++ GG G G A L RG ++V+ + G + ++
Sbjct: 2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLR--REGEDLIYVEG------------ 46
Query: 841 DDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQ----TPEDFNASLGPKAN-- 894
D+T E V + A + P+ + + A V + E F L + N
Sbjct: 47 -DVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVL--EVNLL 103
Query: 895 --------ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
A + G V +SV+ G GQ Y +
Sbjct: 104 GTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAAS 151
>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum
ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A
{Clostridium acetobutylicum}
Length = 245
Score = 41.5 bits (98), Expect = 0.001
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 1193 NPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
P T+ D + + + + I L+G+S GG + L +A+K
Sbjct: 58 QCPSTVYGYIDNVANFITNSEVTK--HQKNITLIGYSMGGAIVLGVALK 104
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 41.7 bits (99), Expect = 0.001
Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 30/188 (15%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ GG G G + + L GA + SR+ + + W+S +V S D++
Sbjct: 13 LVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKEL---NDCLTQWRSKGFKVEASVCDLS 68
Query: 845 TEAGVVNLLTEANKL--GPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKY 902
+ + L+ G ++ + N A ++ ++ T ED++ + N +
Sbjct: 69 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMS--INFEAAY-HL 125
Query: 903 SRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL---- 953
S P L G V SSVS + YG + L
Sbjct: 126 SVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKG------------AMDQLTRCL 173
Query: 954 AVEWGAVG 961
A EW
Sbjct: 174 AFEWAKDN 181
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 41.4 bits (98), Expect = 0.001
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 28/171 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ GG G GL L+ GA ++V+ G + + + +
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRG-----EDVV----ADLGDRARFA 57
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQ----TPEDFNASLGPKANA 895
D+T EA V + L A +G + + N A ++ + F + N
Sbjct: 58 AADVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIV--DINL 115
Query: 896 TKYFD---KYSRTMCPTL---------GQFVVFSSVSCGRGNAGQTNYGMA 934
F+ + + T G + +SV+ G GQ Y +
Sbjct: 116 VGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSAS 166
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 41.1 bits (96), Expect = 0.001
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 6/134 (4%)
Query: 1009 VAEKKAGSGGATNIVDAVINILG--LR-DLKTVSLHSTLAELGMDSMMAVEIKQTLEREF 1065
+ + + + L L + + S ELG+DS++A + + + + +
Sbjct: 14 LVPRGSHMVADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHY 73
Query: 1066 EVFLTPQDIRGL-TFAKLQDIAVSFENDDK--SKPVSTEASGGQVTALSVEDIPDVGIQY 1122
++ + I F + + + PV E + IQ
Sbjct: 74 QLKIPADGIYTYPVFKAFTQWVGTQLQPTQATAAPVQREPVATAPQPGAQASAQRESIQD 133
Query: 1123 LMRTIGDEILANKP 1136
++ E+L P
Sbjct: 134 YLKQSLGELLFLDP 147
Score = 38.8 bits (90), Expect = 0.006
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTP 1071
+ ++ +L L D + + +LGMDS+ + + + R F + L
Sbjct: 135 LKQSLGELLFL-DPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAA 183
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 41.3 bits (98), Expect = 0.001
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
+I G G G +A L G + ++ + + + + + V + ++
Sbjct: 5 LITGASRGIGRAIALRLAEDGFALAIHYGQN--REKAEEVAEEARRRGSPLVAVLGANLL 62
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKYS 903
L+ +A LG +D + N A + +D L ED+ A L +AN + F + +
Sbjct: 63 EAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVL--EANLSAVF-RTT 119
Query: 904 RTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
R + G+ V +SV GN GQ NY
Sbjct: 120 REAVKLMMKARFGRIVNITSVVGILGNPGQANY 152
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 41.3 bits (98), Expect = 0.001
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
+ G G GLE+ GAR L+L R A + D+T
Sbjct: 15 AVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDRAAQELG-----AAVAARIVADVT 68
Query: 845 TEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
+ EA + PV + N A + + +
Sbjct: 69 DAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQ 111
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 1172 VLEPLAKNINAQVLVF------QFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGF 1225
EPL+ Q + D +P + + L+ ++ + G L G
Sbjct: 40 FFEPLSNVGQYQRIYLDLPGMGNSDPISPSTSDNVLET-LIEAIEEII--GARRFILYGH 96
Query: 1226 SFGGMVALELAIKL-EQLGTKCHLYLVDSAP 1255
S+GG +A +A L +Q ++L
Sbjct: 97 SYGGYLAQAIAFHLKDQTL---GVFLTCPVI 124
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 41.0 bits (97), Expect = 0.002
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 17/165 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+++ ++ G G G E A GA ++L R+ + + + I + Q
Sbjct: 11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN--EEKLRQVASHINEETGRQPQWF 67
Query: 840 TDD--ITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASL-----G 890
D T L +DG+ + A +L D Q P+ + +
Sbjct: 68 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNA 127
Query: 891 PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGR-GNAGQTNYGMA 934
T+ + + +VF+S S GR G A Y +
Sbjct: 128 T-FMLTQAL---LPLLLKSDAGSLVFTSSSVGRQGRANWGAYAAS 168
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 40.6 bits (96), Expect = 0.002
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
K +I G G G +A L G L L +RS + + + ++ + V+V
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDR--LEKIAHELMQEQGVEVFYHH 58
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
D++ V + + G VD + A + E + E+F+
Sbjct: 59 LDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHE 106
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 40.7 bits (96), Expect = 0.002
Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+NK+ I LGG GL+ + LV R + V+ R AL + V +
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV---ENPTALAELKAINPKVNITFH 60
Query: 840 TDDITTEAGVVNLLTEA--NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
T D+T L + ++L VD + N A +L D E + N T
Sbjct: 61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERT----IAINFTGLVNTTT 116
Query: 898 YFDKY-SRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+ + G SV+ Y
Sbjct: 117 AILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVY 151
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 40.6 bits (96), Expect = 0.002
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K+ +I G G G +A L G+ K++++ + + ++L + I
Sbjct: 13 TGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSN--EEKLKSLG----NALKDNYTIE 65
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
++ + NL+ +K +D + A + D L +DF+ + N F
Sbjct: 66 VCNLANKEECSNLI---SKTSNLDILVCNAGITSDTLAIRMKDQDFDKVI--DINLKANF 120
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
+R + G+ + SS+ GN GQ NY
Sbjct: 121 -ILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANY 156
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP---- 891
DI+ + VV L +A + G +D + + + + T E F+ G
Sbjct: 79 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 138
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGR-GNAGQTNYGMA 934
+ K+ + R ++ SS++ G Y +
Sbjct: 139 QQ-GLKHCRRGGR--------IILTSSIAAVMTGIPNHALYAGS 173
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 1197 TIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDS 1253
T+ A + + VG S G ++ + +I+ +L + L +V
Sbjct: 72 TLDGYAQDVLDVCEALDLKETV------FVGHSVGALIGMLASIRRPELFSH--LVMVGP 123
Query: 1254 APDYVLTSLRKLPDWNA 1270
+P Y L P++
Sbjct: 124 SPCY----LNDPPEYYG 136
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 40.2 bits (95), Expect = 0.003
Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 21/159 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSG----VKNGYQALRIKIWKSYDVQ 835
+ K ++ GG G G +A GA + L V ++
Sbjct: 5 AGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEGKEVAEAIGGAFFQV------- 56
Query: 836 VLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKAN 894
D+ E V + EA LG VD + N A + ++ L
Sbjct: 57 ------DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 110
Query: 895 ATKYFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
A + +R M G V +SV Y
Sbjct: 111 APMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAY 149
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 37.5 bits (87), Expect = 0.003
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 1034 DLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDIRGLT 1078
DL L ++G DS+ +E LE + V + +
Sbjct: 25 DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVD 69
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 40.2 bits (95), Expect = 0.003
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 17/167 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K +I G G GL A GA K+ L R N + ++
Sbjct: 6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANI-DETIASM-RADGGDAAFF 62
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATK 897
D+ T L+ E K G +D + N A ++ ++A + AN
Sbjct: 63 AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVM--DANIRS 120
Query: 898 YFD---------KYSRTMCPTLGQFVVFSSVSCGRGNA-GQTNYGMA 934
+ + S++ G G YG A
Sbjct: 121 VVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAA 167
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 40.3 bits (95), Expect = 0.003
Identities = 22/178 (12%), Positives = 46/178 (25%), Gaps = 25/178 (14%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLI- 838
+ ++ G G +A L G ++V+ + + +L ++ K ++
Sbjct: 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAA-VSLADELNKERSNTAVVC 79
Query: 839 ---STDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKA- 893
T+ A ++ G D + N A ED + +
Sbjct: 80 QADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQ 139
Query: 894 -------------NATKYFDKYSRTMCPTL----GQFVVFSSVSCGRGNAGQTNYGMA 934
T F + + P V + + Y M
Sbjct: 140 VAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMG 197
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 40.2 bits (95), Expect = 0.003
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 14/161 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K II G G G E+A GA +V++ + + + +I + Q
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA--DAANHVVDEI-QQLGGQAFAC 65
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
DIT+E + L A +KLG VD + N A F+ DF + N +
Sbjct: 66 RCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFD-MPMADFRRAYE--LNVFSF 122
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMA 934
F S+ + P + G + +S++ N T+Y +
Sbjct: 123 F-HLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASS 162
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 40.2 bits (95), Expect = 0.003
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+++ +I GG G G A L GA KL L S + + D +VL +
Sbjct: 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLE-TAPDAEVLTT 69
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATK 897
D++ EA V +T + G +DG FN A + K E+ T +F+ +
Sbjct: 70 VADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVF 129
Query: 898 YFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ + M G V +SV RG Q+ Y
Sbjct: 130 LGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGY 165
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 39.9 bits (94), Expect = 0.004
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ ++ G G GL +A L GA +VL + + V+ +
Sbjct: 3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIA-----RHGVKAVHH 56
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKA 893
D++ A + L A + G VD + N A + A E E ++ +
Sbjct: 57 PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAV-F 115
Query: 894 NATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNY 931
+ T+ M G+ + +SV G+ G+ Y
Sbjct: 116 HGTRLA---LPGMRARNWGRIINIASVHGLVGSTGKAAY 151
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 39.4 bits (93), Expect = 0.004
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 26/157 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+K ++ G G +AD L GA + + +R+ + L+
Sbjct: 18 RDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNE-----ELLK-------RSGHRYV 64
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYF 899
D+ + ++ K+ VD + A K F+ T EDF ++ +
Sbjct: 65 VCDLRKDLDLL-----FEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAI--DSLFLNMI 117
Query: 900 DKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNY 931
K R P + G+ V +S S
Sbjct: 118 -KIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTS 153
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 39.5 bits (93), Expect = 0.004
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP---- 891
++ +V + EA G +D + + + V+ ++ TPE+F+ G
Sbjct: 87 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVA 146
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGR-GNAGQTNYGMA 934
+ A K+ + R ++ S++ Y +
Sbjct: 147 RE-AYKHLEIGGR--------LILMGSITGQAKAVPKHAVYSGS 181
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 39.1 bits (92), Expect = 0.006
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP---- 891
D + + E LG +D + N A + A E T DF+ + P
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAI 148
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGR-GNAGQTNYGMA 934
++ A+++ R + S G + Y +
Sbjct: 149 RS-ASRHLGDGGR--------IITIGSNLAELVPWPGISLYSAS 183
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, mycobac
smegmatis; 1.90A {Mycobacterium smegmatis}
Length = 330
Score = 39.3 bits (92), Expect = 0.007
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 44/151 (29%)
Query: 1172 VLEPLAKNINAQVLVF-QFDH---TNPPD------TIPEMAD---SLLPHFKKRLVHGTD 1218
+ LA V+ + Q T+ PD T D ++ G +
Sbjct: 73 NIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIE 126
Query: 1219 EIKLVGFSFGGMVALELAIKLEQLGTKCH------LYLVDSAPDYVLTSLRKLPDWNAKL 1272
++G S+GGM+ E+A++ L + +S + W+
Sbjct: 127 RYHVLGQSWGGMLGAEIAVR--------QPSGLVSLAICNSPAS--------MRLWSEAA 170
Query: 1273 NYFLDLMPED---ATHSRTYQRNLAHAAYKR 1300
+P + A + H Y +
Sbjct: 171 GDLRAQLPAETRAALDRHEAAGTITHPDYLQ 201
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 39.1 bits (92), Expect = 0.007
Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 29/186 (15%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ G G G +A GA ++ R+ G + + +I D+
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGAH-VLAWGRTD---GVKEVADEI-ADGGGSAEAVVADLA 89
Query: 845 TEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKYSR 904
G N+ E VD + N A ++ A E + + L N + SR
Sbjct: 90 DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLT--VNLDAAW-VLSR 146
Query: 905 TMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL----AV 955
+ + G+ V +S+ +G Y + + GL A
Sbjct: 147 SFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKH------------AVVGLTRALAS 194
Query: 956 EWGAVG 961
EW G
Sbjct: 195 EWAGRG 200
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 39.0 bits (90), Expect = 0.007
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 27/196 (13%)
Query: 1185 LVFQFDHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGT 1244
+ F+ + +L K + G + VG S G M
Sbjct: 66 VEFKDNKNGNFKENAYWIKEVLSQLKSQ--FGIQQFNFVGHSMGNMSFAF---------- 113
Query: 1245 KCHLYLVDSAPDYVLTSLRKLPDWNAKLN--YFLDLMPEDATHSRTYQRNLAHAAYKRIT 1302
Y+ + D L L+K + N ++ + + + + +AAY+++
Sbjct: 114 ----YMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQGKPSRMNAAYRQLL 169
Query: 1303 SILKYTDPKHKAF---GGNITLLRPTEQALPTAEDYGLSKVCKKPVK------VHFVDGN 1353
S+ K K G++ ++ + + L + + K
Sbjct: 170 SLYKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQ 229
Query: 1354 HFTVLDNIKSAQIIMH 1369
H + +N A I+
Sbjct: 230 HSQLHENKDVANEIIQ 245
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 39.3 bits (92), Expect = 0.007
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSR--SGVKNGYQALRIKIWKSYDVQVL 837
+ ++ + GG G G+ L L+ +G + + + + L + +V+
Sbjct: 7 AGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKALATLEAE---GSGPEVM 62
Query: 838 ISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLG 890
D+ + G E + GPV + N A V E + +D++ LG
Sbjct: 63 GVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLG 116
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 38.9 bits (91), Expect = 0.007
Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 27/178 (15%)
Query: 1154 VGNNNTIFMVPGIEGIAT----VLEPLAKNINAQVLVFQFDH-----TNPPD-----TIP 1199
G + + P + V + + ++ ++
Sbjct: 20 KGEGPPLCVTHLYSEYNDNGNTFANPFTDH--YSVYLV--NLKGCGNSDSAKNDSEYSMT 75
Query: 1200 EMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAP--DY 1257
E L ++ L ++ G S GGM+AL A + ++ TK + + +A +Y
Sbjct: 76 ETIKDLE-AIREAL--YINKWGFAGHSAGGMLALVYATEAQESLTK--IIVGGAAASKEY 130
Query: 1258 VLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAF 1315
N K N + +M +A + + + A + + Y++ K +
Sbjct: 131 ASHKDSIYCSKNVKFNRIVSIM--NALNDDSTVQEERKALSREWALMSFYSEEKLEEA 186
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 39.1 bits (92), Expect = 0.008
Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 32/169 (18%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-------GYQALRIKIWKSY 832
+ K I+ G G GL +A L G ++ G G A ++
Sbjct: 28 AGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADIDGDAADAAATKIGCGAAACRV---- 82
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-- 889
D++ E ++ ++ G VD + A V+ A + T EDF+ +
Sbjct: 83 ---------DVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAI 133
Query: 890 ---GPKANATKYFDKYSRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMA 934
G TK+ + M G V SS++ G YGM+
Sbjct: 134 NLRGA-WLCTKHA---APRMIERGGGAIVNLSSLAGQVAVGGTGAYGMS 178
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 39.2 bits (92), Expect = 0.008
Identities = 52/301 (17%), Positives = 96/301 (31%), Gaps = 60/301 (19%)
Query: 651 LQASVRCLAQGGRFLEIGKFDLANNN------MLGMEVFMRETSFHGVMLDNFFFAEQEW 704
+R LA R + +G + +E F R
Sbjct: 106 FTPLLRNLAPCARVVVVGTTPAEAGSVHAQVVQRALEGFTR------------------- 146
Query: 705 KMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGK--HIGKVIIKIRDEEPTKI 762
SL K L++ V +E R++ + K ++ + ++ + T
Sbjct: 147 --SLGKELRRGATVSLVYLSADAKPGATGLESTMRFILSAKSAYVDGQVFRVGAADSTPP 204
Query: 763 CTPKVKQLLAVPRYYADSNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQ 822
+ L K ++ G G G +A+ GA +V G +
Sbjct: 205 --ADWDKPLD--------GKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLK 253
Query: 823 ALRIKIWKSYDVQVLISTDDITTEAGVVNLLTEANK--LGPVDGIFNLAVVLKDALFENQ 880
+ + + D+T + V + + G VD + N A + +D L N
Sbjct: 254 RV-ADKVGGTALTL-----DVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANM 307
Query: 881 TPEDFNA----SLGPKANATKYFDKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYGM 933
+ ++A +L T+ T+ G+ + SS++ GN GQTNY
Sbjct: 308 DEKRWDAVIAVNLLAPQRLTEGL---VGNG--TIGEGGRVIGLSSMAGIAGNRGQTNYAT 362
Query: 934 A 934
Sbjct: 363 T 363
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 38.7 bits (91), Expect = 0.008
Identities = 42/253 (16%), Positives = 80/253 (31%), Gaps = 39/253 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K ++ G G GL A L G + L + ++ V+
Sbjct: 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVR---EKGVEARSY 61
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASLGPKANATK 897
D+T+E V+ + G +D +FN A A ++ +DF L
Sbjct: 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF 121
Query: 898 YFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL-- 953
+ K SR M G+ V +S++ +G YG + + L
Sbjct: 122 HVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKG------------AIIALTE 169
Query: 954 --AVEWGAVG-EVGLVA------DMAEDNLEVVIGGTLQQRISNCLECLNEFLIQSEPI- 1003
A++ V ++ + + Q S + + + +I S P+
Sbjct: 170 TAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMR 229
Query: 1004 -------VASMVV 1009
+ +V
Sbjct: 230 RYGDINEIPGVVA 242
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 38.7 bits (90), Expect = 0.009
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 1189 FDHTNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
D P E+A ++L + H +VG S G + +A+
Sbjct: 68 RDFAAHPYGFGELAADAVAVLDGWGVDRAH------VVGLSMGATITQVIALD 114
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 38.7 bits (91), Expect = 0.010
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 552 TAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGTPEKREFIRK 608
TA + + ++ GE++L+ A +G VG +A+ ++ G+ EK ++++
Sbjct: 132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ 188
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 38.3 bits (90), Expect = 0.011
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S+ +I G GL A L+ G R ++++ R+ ++ + +
Sbjct: 26 SSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHA---SVTELRQAGAVALYG--- 78
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D + E G++ + + + + + A + ++F +
Sbjct: 79 --DFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPG-EEADNFTRMFS--VHMLAP 133
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMA 934
+ + P L V S +G++ Y
Sbjct: 134 Y-LINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCAT 173
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 38.3 bits (90), Expect = 0.012
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 17/158 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++K I+ GG G GL + D LV GA K+V S + + KI
Sbjct: 13 TDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVNVSDHFKI----------- 60
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+T E V + + K G +D + N A + + + E + + N +
Sbjct: 61 --DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYL 118
Query: 899 FDKYS-RTMCPTLGQFVV-FSSVSCGRGNAGQTNYGMA 934
KY+ M ++ +SV Y +
Sbjct: 119 MAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTS 156
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 38.7 bits (90), Expect = 0.012
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 14/139 (10%)
Query: 1170 ATVLEPLAKNINAQVLVF------QFDHTNPPD-TIPEMADSLLPHFKKRLVHGTDEIKL 1222
A + + +++ + NP D + MA + + I L
Sbjct: 55 AVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIML 114
Query: 1223 VGFSFGGMVALELAIKLEQLGTKCH-LYLVDSAPDYVLTSLRKLPDW-NAKLNYF--LDL 1278
+G S GG +A+ A L L ++D + +L + ++ + F L+
Sbjct: 115 IGHSMGGAIAVHTA--SSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLEN 172
Query: 1279 MPEDATHSRTYQRNLAHAA 1297
E + S RNL A
Sbjct: 173 AIEWSVKSGQI-RNLESAR 190
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 38.4 bits (90), Expect = 0.012
Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 24/170 (14%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
++ +I+ G G G + L GA ++ A V
Sbjct: 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPA------AELGAAVRFR 58
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQT----PEDFNASLGPKAN 894
D+T EA L A + G V G+ N A ++ + F ++ N
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTV--AVN 116
Query: 895 ----------ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
A + + G V +S++ G GQ Y +
Sbjct: 117 LIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAAS 166
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 38.4 bits (90), Expect = 0.013
Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 31/167 (18%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK-------NGYQALRIKIWKSY 832
K I+ G G G +A L G + L R G AL +
Sbjct: 27 GKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQETAAEIGDDALCVPT---- 81
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDAL-FENQTPEDFNASLG 890
D+T V L T K G VD +FN A A+ E+ T + +
Sbjct: 82 ---------DVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVD 132
Query: 891 PKAN------ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
N T+ + + P G+ + S+S Y
Sbjct: 133 --TNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPY 177
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 38.4 bits (90), Expect = 0.013
Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 29/192 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G +A GA +V + + K+ +
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGA-TIVFNDIN--QELVDRGMAAY-KAAGINAHGY 88
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+T E G+ ++ + +++G +D + N A +++ T F + +
Sbjct: 89 VCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVI--DIDLNAP 146
Query: 899 FDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL 953
F S+ + P++ G+ + S+ G + Y A GL L
Sbjct: 147 F-IVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKG------------GLKML 193
Query: 954 ----AVEWGAVG 961
A E+G
Sbjct: 194 TKNIASEYGEAN 205
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 37.9 bits (89), Expect = 0.014
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ GG G G +A L G +V+ SR+ + A ++ + Y V+ + D++
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLT--EKYGVETMAFRCDVS 81
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
V LL K G +D + N A + + E ++F
Sbjct: 82 NYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQ 125
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 37.9 bits (89), Expect = 0.015
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K +I G G GL A V GAR + +T R K+ A +I +
Sbjct: 28 NAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRR--KDVLDAAIAEI----GGGAVGI 80
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D A + L + + G +D +F A T E ++ + N
Sbjct: 81 QADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFD--RNVKGV 138
Query: 899 FDKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYG 932
+ P L V+ S + G + Y
Sbjct: 139 LF-TVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYA 174
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 37.9 bits (89), Expect = 0.015
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASL-----GP--- 891
D+ A + + + + G +DG+ N A +V + + E L G
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILC 143
Query: 892 -KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQ-TNYGMA 934
A + SR G V SS++ G+A Q +Y +
Sbjct: 144 AAE-AVRRM---SRLYSGQGGAIVNVSSMAAILGSATQYVDYAAS 184
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 38.2 bits (88), Expect = 0.016
Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 16/223 (7%)
Query: 1153 PVGNNNTIFMVPGIEGIATV-----LEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLP 1207
P + I +VPG PL+ + D + ++
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLND-TQVNTEYMVN 85
Query: 1208 HFKK-RLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKLP 1266
G +++ ++ +S GG+VA + +K L+ APDY T L
Sbjct: 86 AITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVD-RLMAFAPDYKGTVLAGPL 144
Query: 1267 DWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTE 1326
D A + + + + T++ TD ++
Sbjct: 145 DALAVSAPSVWQQTTGSALTTALRNAGGLTQIVPTTNLYSATDEI---VQPQVSNSPLDS 201
Query: 1327 QALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLDNIKSAQIIMH 1369
L ++ VC + H L + S +
Sbjct: 202 SYLFNGKNVQAQAVCGPLFVID-----HAGSLTSQFSYVVGRS 239
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A
3hys_A 3hzo_A
Length = 293
Score = 37.7 bits (88), Expect = 0.019
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 1194 PPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
T M +L+ +VG S G +A EL +
Sbjct: 89 EGFTTQTMVADTAALIETLDIAPAR------VVGVSMGAFIAQELMVV 130
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 37.6 bits (88), Expect = 0.019
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 26/172 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+I GG G GL A+ LV +GA VL QA K + +
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQA------KKLGNNCVFA 63
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQ------TPEDFNASLGPK 892
D+T+E V L A K G VD N A + + N T EDF L
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVL--D 121
Query: 893 AN----------ATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
N + G + +SV+ G GQ Y +
Sbjct: 122 VNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSAS 173
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 37.5 bits (88), Expect = 0.019
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
+I G G G ELA G LT RS K + + + + D+
Sbjct: 5 VITGASSGLGAELAKLYDAEGK-ATYLTGRSESK--LSTVTNCLSNNVGYRAR----DLA 57
Query: 845 TEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
+ V L + + + + A L + Q PE
Sbjct: 58 SHQEVEQLFEQLD--SIPSTVVHSAGSGYFGLLQEQDPEQIQT 98
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 37.6 bits (88), Expect = 0.020
Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 33/198 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K+ I GG G GL +A + GA + L ++S + I Y I
Sbjct: 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTI-----YTAAKEIE 61
Query: 840 TD---------DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL 889
DI V + + + G +D N A + E + F+
Sbjct: 62 EAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMN 121
Query: 890 GPKANATKYFDKYSRTMCPTL-----GQFVVFSSVSCGRGN-AGQTNYGMANSIMERICE 943
G + S++ P + + S T Y MA M
Sbjct: 122 G--IQVRGTYA-VSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCAL 178
Query: 944 ARRAEGLPGLAVEWGAVG 961
G+A E G
Sbjct: 179 --------GIAEELRDAG 188
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 37.6 bits (88), Expect = 0.020
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ + +I G G G A ++ LVL + A + K +V
Sbjct: 30 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCK---GLGAKVHTF 85
Query: 840 TDDITTEAGVVNLLTEANK-LGPVDGIFNLAVVLKDALFENQTPEDF 885
D + + + + +G V + N A V+ +
Sbjct: 86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQI 132
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 37.6 bits (88), Expect = 0.021
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP---- 891
DI +V L +A G +D + + V+ ++ T E+F+ G
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVA 135
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGR-GNAGQTNYGMA 934
+ A ++ + R V+ SS + + Y +
Sbjct: 136 RE-AYRHLTEGGR--------IVLTSSNTSKDFSVPKHSLYSGS 170
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 37.6 bits (88), Expect = 0.023
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 19/128 (14%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFD 900
DI E V + + G +D + N A + + + F+ NA F
Sbjct: 70 DIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQ--VNARGSF- 126
Query: 901 KYSRTMCPTL-----GQFVVFSSVS--CGRGNAGQTNYGMANSIMERICEARRAEGLPGL 953
++ P L + + T Y +A M + GL
Sbjct: 127 VCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTL--------GL 178
Query: 954 AVEWGAVG 961
A E+G G
Sbjct: 179 AAEFGPQG 186
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 37.1 bits (87), Expect = 0.024
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 28/167 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-------GYQALRIKIWKSY 832
S K+ II GG G G E A V GA ++VL + G A +
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHL---- 58
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP 891
D+T E ++ A + G VDG+ N A + E ++ E F +
Sbjct: 59 ---------DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVE- 108
Query: 892 KANATKYF--DKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMA 934
N T F K M G V SS + G A ++YG +
Sbjct: 109 -INLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGAS 154
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 37.2 bits (87), Expect = 0.025
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 1190 DHTNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
+ P TI ++ L+ K + G S GG+ + LA +
Sbjct: 67 EAPKGPYTIEQLTGDVLGLMDTLKIARAN------FCGLSMGGLTGVALAAR 112
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 37.2 bits (87), Expect = 0.026
Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ +I G G G ++ + L+ +G + +T S + +K + ++
Sbjct: 6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETM--KETYKDVEERLQFV 62
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA--VVLKDALFENQTPEDFNA----SLGPK 892
D+T + + ++ EA + G +D + N A V + + +++N +L
Sbjct: 63 QADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAV 122
Query: 893 ANATKYFDKYSRTMCPTLGQ------FVVFSSVSCGRGNAGQTNY 931
+ K M Q F G ++ +
Sbjct: 123 FHLLKLV---VPVM---RKQNFGRIINYGFQGADSAPGWIYRSAF 161
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide
synthase, PKS, biosynthetic protein; NMR {Streptomyces
roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 34.4 bits (79), Expect = 0.027
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 1037 TVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDI 1074
L + +LG DS+ +E L++ + + LT + +
Sbjct: 26 AGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETV 63
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 36.9 bits (86), Expect = 0.028
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 1194 PPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
P D A L+ K + V L+G+S GG+ AL A K
Sbjct: 73 PADFFERDAKDAVDLMKALKFKKVS------LLGWSDGGITALIAAAK 114
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 36.9 bits (86), Expect = 0.031
Identities = 14/127 (11%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 831 SYDVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL 889
+ V + +T L+ G D + N A + +
Sbjct: 74 TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCV 133
Query: 890 GPKANATKYFDKY---------------SRTMCPTL-------GQFVVFSSVSCGRGNAG 927
G + + + T + + G
Sbjct: 134 GDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLG 193
Query: 928 QTNYGMA 934
T Y MA
Sbjct: 194 YTIYTMA 200
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P
structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 36.7 bits (84), Expect = 0.032
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 25/210 (11%)
Query: 1168 GIATVLEPLAKNINAQVLVFQF-DHTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFS 1226
G L K+ ++ F F + PD + + K R +G ++ VG S
Sbjct: 45 GKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLKIAMEDLKSR--YGFTQMDGVGHS 102
Query: 1227 FGGMVALELAIKLEQLGTKCHLY-LVDSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATH 1285
GG+ A T L LV + L + ++ +P
Sbjct: 103 NGGLALTYYAEDYAGDKTVPTLRKLVAIGSPF-----NDLDPNDNGMDLSFKKLPNSTPQ 157
Query: 1286 SRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALPTAEDYGLSKVCKKPV 1345
+ +N D + A G ++ PT+ +PT
Sbjct: 158 MDYFIKNQTE----------VSPDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSA 207
Query: 1346 K------VHFVDGNHFTVLDNIKSAQIIMH 1369
K D H T+ + KS +
Sbjct: 208 KAYIEDIQVGEDAVHQTLHETPKSIEKTYW 237
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 37.0 bits (86), Expect = 0.035
Identities = 14/127 (11%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 831 SYDVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL 889
+ V + +T L+ G D + N A + +
Sbjct: 111 TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCV 170
Query: 890 GPKANATKYFDKY---------------SRTMCPTL-------GQFVVFSSVSCGRGNAG 927
G + + + T + + G
Sbjct: 171 GDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLG 230
Query: 928 QTNYGMA 934
T Y MA
Sbjct: 231 YTIYTMA 237
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 36.8 bits (86), Expect = 0.040
Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 52/234 (22%)
Query: 552 TAVYAMFICGQMQKG--ESILIHAGSGGVGQAAINLARYMDAEIFTTV----GTPEKREF 605
T++ + G + G +++++ +G G A + ++ + V GT EK
Sbjct: 145 TSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGC---SRVVGICGTHEKCIL 201
Query: 606 IRKTFPF-----IKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSLAEEKLQASVRCLAQ 660
+ F K++N+ EQL + + GVD+ +++ + + +
Sbjct: 202 LTSELGFDAAINYKKDNVA-------EQL--RESCPAGVDVYFDNVGGNISDTVISQMNE 252
Query: 661 GGRFLEIG---------KFDLANNNMLGMEVFMRETSFHGVMLDNFF--FAEQEWKMSLQ 709
+ G + + + R + ++ N+ F
Sbjct: 253 NSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEP------GI 306
Query: 710 KALQKAIDAGAVQPLVRTIFPEDKVE------EAFRYMAAGKHIGKVIIKIRDE 757
L + G ++ E + AF+ M G +IGK I+ I +E
Sbjct: 307 LQLSQWFKEGKLK------IKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 36.5 bits (85), Expect = 0.048
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 1192 TNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHL 1248
T ++ A +L V ++G S ++A + + + +
Sbjct: 75 TKRYSSLEGYAKDVEEILVALDLVNVS------IIGHSVSSIIAGIASTHVGDRISD--I 126
Query: 1249 YLVDSAPDYVLTSLRKLPDWNA 1270
++ +P + + PD+
Sbjct: 127 TMICPSPCF----MNFPPDYVG 144
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 36.4 bits (85), Expect = 0.048
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 40/122 (32%)
Query: 1215 HGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKL--------- 1265
G +++ L+G S+GG +AL A+K + D++ + L
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVK--------Y-------QDHL----KGLIVSGGLSSV 134
Query: 1266 PDWNAKLNYFLDLMPED------------ATHSRTYQRNLAHAAYKRITSILKYTDPKHK 1313
P ++N +D +P + + YQ + + ++ + + K
Sbjct: 135 PLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLK 194
Query: 1314 AF 1315
+
Sbjct: 195 SL 196
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG; HET:
MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 36.4 bits (85), Expect = 0.048
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 1190 DHTNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
P T+ + + LL + R H +G S GG+V LA+
Sbjct: 68 SVPPGPYTLARLGEDVLELLDALEVRRAH------FLGLSLGGIVGQWLALH 113
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 36.3 bits (85), Expect = 0.051
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
++ I+ G G GL +A + RG ++ S + W +Y +VL
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSA--ETLEETARTHWHAYADKVLRVR 58
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLA---VVLKDALFENQTPEDFNASLGPKANAT 896
D+ E V + + G +D + N A + + E F+ +
Sbjct: 59 ADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGI 118
Query: 897 KYFDKY-SRTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMA 934
+ M G V +SV+ G++ Y +
Sbjct: 119 FLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTS 158
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 36.4 bits (85), Expect = 0.052
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK-------NGYQALRIKIWKSY 832
+ + I+ GG G G A+ GA +V+ + G +A +++
Sbjct: 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRV---- 80
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP 891
D+++ +++ + K G VD + N A E ++ +
Sbjct: 81 ---------DVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMS- 130
Query: 892 KANATKYF--DKYS-RTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMA 934
N F KY M G + +S + A +T Y +
Sbjct: 131 -VNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVAS 176
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family,
developmental protei differentiation, neurogenesis,
phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB:
2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 36.3 bits (83), Expect = 0.054
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 1189 FDHTNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
F ++ ++AD +L + + VG G + A+
Sbjct: 85 FPLGYQYPSLDQLADMIPCILQYLNFSTII------GVGVGAGAYILSRYALN 131
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 35.9 bits (84), Expect = 0.055
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K II GG G GL +A V GA K+++T R A + Q+
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT----PDQIQFF 59
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
D + E G L GPV + N A + + E T ++
Sbjct: 60 QHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRK 108
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR
{Pseudomonas aeruginosa}
Length = 103
Score = 34.0 bits (77), Expect = 0.056
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 1021 NIVDAVINILGLR---DLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTPQDI 1074
++ D ++ +L + + +S S + +L DS++ E+ L +EF V ++
Sbjct: 26 DMEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDEL 82
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 36.0 bits (84), Expect = 0.068
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 17/166 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ I+ GG G GL +A L G + +T + + ++ +V+
Sbjct: 28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGV-APVIAEL-SGLGARVIFL 84
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDA--LFENQTPEDFNASLGP--KA- 893
D+ + + + G +D + N A + F + PE+F+ +G +
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144
Query: 894 -NATKYFDKYSRTMCPTLGQF----VVFSSVSCGRGNAGQTNYGMA 934
T+ + M + + + +SVS + + +Y M+
Sbjct: 145 VFFTQAV---LKAMLASDARASRSIINITSVSAVMTSPERLDYCMS 187
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 35.5 bits (81), Expect = 0.068
Identities = 21/158 (13%), Positives = 35/158 (22%), Gaps = 21/158 (13%)
Query: 1154 VGNNNTIFMVPGIEGIATV--------LEPLAKNINAQVLVFQFDHTNPPDTIPEMADSL 1205
+ + + +VPG G + L K Q L
Sbjct: 1 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITAR-----ESIW 55
Query: 1206 LPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKL 1265
LP + L I ++G S G + A+ A D +
Sbjct: 56 LPFMETELHCDEKTI-IIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYF 114
Query: 1266 PDWNAKLNYFLDLMPEDATHSRT-------YQRNLAHA 1296
+ S Q+ +A
Sbjct: 115 TRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADR 152
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 36.1 bits (83), Expect = 0.070
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 1156 NNNTIFMVP--GIEGIATVLEPLAKNINAQVLVFQFD--------HTNPPD-TIPEMADS 1204
N + G A + + + + D +N + + + ++
Sbjct: 40 GNPCFVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGLRDWVNA 99
Query: 1205 LLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
+L + L S GG AL++ +
Sbjct: 100 IL-MIFEHF--KFQSYLLCVHSIGGFAALQIMNQ 130
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 35.6 bits (83), Expect = 0.072
Identities = 38/173 (21%), Positives = 54/173 (31%), Gaps = 35/173 (20%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK-------NGYQALRIKIWKSY 832
K +I G GFG +A GA K+V+ R G AL +
Sbjct: 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAA---- 62
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNAS-- 888
DI+ EA V + A +K G VD + N A + K E PE+F+
Sbjct: 63 ---------DISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVG 113
Query: 889 -------LGPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
L +F + + +S GR Y
Sbjct: 114 VNVRGVYLMTSK-LIPHFKE--NGAKGQECVILNVASTGAGRPRPNLAWYNAT 163
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 35.6 bits (83), Expect = 0.073
Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 28/167 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-------GYQALRIKIWKSY 832
+ K ++ GG G G +V GA K+V + A + +
Sbjct: 6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHL---- 60
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP 891
D+T A + A G + + N A +L E+ ++ L
Sbjct: 61 ---------DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILD- 110
Query: 892 KANATKYF--DKYS-RTMCPT-LGQFVVFSSVSCGRGNAGQTNYGMA 934
N T F + + M G + SS+ G Y
Sbjct: 111 -VNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTAT 156
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier,
phosphopantetheine, fatty acid biosynthesis, lipid
synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas
europaea}
Length = 105
Score = 33.5 bits (76), Expect = 0.088
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 1022 IVDAVINILGLRD-LKTVSLHSTL--AELGMDSMMAVEIKQTLEREFEVFLTPQDIRGLT 1078
+ + + ++L L + T++ S L +DSM V + LE F+ + +I T
Sbjct: 29 VRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQT 88
Query: 1079 FAKLQDIA 1086
F L +A
Sbjct: 89 FETLGSLA 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.090
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 1033 RDLKTVSLHSTLAELGMDSMMAVEIKQTLE 1062
+ LK L ++L DS A+ IK T+E
Sbjct: 20 QALK--KLQASLKLYADDSAPALAIKATME 47
Score = 34.2 bits (77), Expect = 0.12
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 1236 AIKLEQLGTKCHLYLVDSAP 1255
A+K +L LY DSAP
Sbjct: 21 ALK--KLQASLKLYADDSAP 38
Score = 29.5 bits (65), Expect = 3.9
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 208 QLQILQYDTRGLFVPTSIQKLVINVS 233
L+ LQ + L+ S L I +
Sbjct: 21 ALKKLQASLK-LYADDSAPALAIKAT 45
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 35.5 bits (83), Expect = 0.092
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRS--GVKNGYQALRIKIWKSYDVQVL 837
K I+ G G A GA K++ T + ++ + I+
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVL------ 57
Query: 838 ISTDDITTEAGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATK 897
D+T + + AN++ +D +FN+A + + +D++ S+ N
Sbjct: 58 ----DVTKKKQIDQF---ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMN--LNVRS 108
Query: 898 YFDKYSRTMCPTL-----GQFVVFSSV-SCGRGNAGQTNYGMA 934
+ + P + G + SSV S +G + Y
Sbjct: 109 MY-LMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTT 150
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 35.5 bits (83), Expect = 0.092
Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 24/185 (12%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLISTDDIT 844
++ G G G A+ L GA +++L + D+T
Sbjct: 13 LVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLT---RKGYDAHGVAFDVT 68
Query: 845 TEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDKY- 902
E + ++ + VD + N A + E++ + + +
Sbjct: 69 DELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSA 128
Query: 903 SRTMCP--TLGQFVVFSSVSCGRGNAGQTNYGMANSIMERICEARRAEGLPGL----AVE 956
++ M + G+ + S++ Y A G+ L A E
Sbjct: 129 AKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKG------------GIKMLTCSMAAE 176
Query: 957 WGAVG 961
W
Sbjct: 177 WAQFN 181
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 35.2 bits (82), Expect = 0.096
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
NK I+ G G G +A L + +V ++ + ++ + +VL
Sbjct: 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL--EDRLNQIVQEL-RGMGKEVLGV 61
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASLGPKANATK 897
D++ + V + +D + N A ++ + E + L +
Sbjct: 62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAF 121
Query: 898 YFDKY-SRTMCPTLGQFVVF-SSVSCGRGNAGQTNY 931
Y + M +V +S++ RG Y
Sbjct: 122 YSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPY 157
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 35.2 bits (82), Expect = 0.096
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 18/97 (18%)
Query: 847 AGVVNLLTEANKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GP----KANATK 897
+ + N L D + N A + A E T + F+ + P + A
Sbjct: 77 SSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQ-ALS 135
Query: 898 YFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
SR + SS + Y M
Sbjct: 136 RLRDNSR--------IINISSAATRISLPDFIAYSMT 164
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 35.1 bits (82), Expect = 0.100
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 27/166 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKN-------GYQALRIKIWKSY 832
K ++ GG G GLE+ L+ GA K+ + + G +++ ++
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRH---- 59
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGP 891
D+++EA ++ +LG ++ + N A +L E EDF+ L
Sbjct: 60 ---------DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLK- 109
Query: 892 KANATKYF--DKYS-RTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
N F + M T G + +SVS Y +
Sbjct: 110 -INTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSAS 154
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 35.2 bits (82), Expect = 0.11
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL-----GPKANA 895
D+ +A + L+ + + G +D + A VL T E ++ + G
Sbjct: 85 DVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGT-WRT 143
Query: 896 TKYFDKYSRTMC--PTLGQFVVFSSVSCGRGNAGQTNYGMA 934
+ M G VV SS + + G +Y +
Sbjct: 144 LRAT---VPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSAS 181
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 35.2 bits (82), Expect = 0.11
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 20/166 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKI------WKSYD 833
+ ++ G G G ++ L GA + + Q +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD--RAAAQETVRLLGGPGSKEGPPR 62
Query: 834 VQVLISTDDITTEAGVVNLLTEANKL--GPVDGIFNLAVVLKDALFENQTPEDFNA---- 887
D++ LL + P + + A + +D + + +D++
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 122
Query: 888 SLGPKANATKYFDKYSRTM--CPTLGQFVVFSSVSCGRGNAGQTNY 931
+L T+ ++ + G + SS+ GN GQTNY
Sbjct: 123 NLKGTFLVTQAA---AQALVSNGCRGSIINISSIVGKVGNVGQTNY 165
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 35.2 bits (82), Expect = 0.11
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
NK ++ G GL +A L GA +V++SR + + + + V +
Sbjct: 13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRK--QENVDRTVATL-QGEGLSVTGT 68
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNASL-----GPK 892
+ L+ A N G VD + + A V + T E ++ L
Sbjct: 69 VCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT- 127
Query: 893 ANATKYFDKYSRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMA 934
TK M G V+ SSV Y ++
Sbjct: 128 VLMTKAV---VPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVS 167
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 35.1 bits (81), Expect = 0.11
Identities = 18/156 (11%), Positives = 51/156 (32%), Gaps = 19/156 (12%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQ-VLVFQFDH----TNPPD----TIPEMADSL 1205
+ ++ G G + + L + + ++ + P + + +
Sbjct: 14 AGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDV 73
Query: 1206 LPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKL 1265
+ ++ G ++I + G S GG+ +L+L + + AP Y+ +
Sbjct: 74 MNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPI-----EGIVTMCAPMYIKSEETMY 128
Query: 1266 PDWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRI 1301
L Y + + ++ + +K+
Sbjct: 129 EGV---LEYAREYKKREGKSEEQIEQEMEK--FKQT 159
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 35.4 bits (82), Expect = 0.11
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 1192 TNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
N T + A+ LL L G ++ ++G S GG+ + ++
Sbjct: 111 ENVSGTRTDYANWLL-DVFDNL--GIEKSHMIGLSLGGLHTMNFLLR 154
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 34.9 bits (81), Expect = 0.13
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 1190 DHTNPPDTIPEMADSLLPHFKKRLV--HGTDEIKLVGFSFGGMVALELAIK 1238
D +I +MA L + + G + +VG + G +V ++LA+
Sbjct: 57 DTLAEDYSIAQMAAELH-----QALVAAGIEHYAVVGHALGALVGMQLALD 102
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 35.0 bits (80), Expect = 0.13
Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 1151 EEPVGNNNTIFMVPGIEGIATVLEPLAKNINAQ-VLVFQFDHTNPP---------DTIPE 1200
E NNTI + G LA+ ++ VF++D + T+
Sbjct: 29 ENVPFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTT 88
Query: 1201 MADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLT 1260
+SL + GT I L+ S VA E+ L + + +
Sbjct: 89 GKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVISDL-----ELSFLITAVGVVNLRD 143
Query: 1261 SLRKLPDWNAKLNYFLDLMPEDATH------SRTYQRNLAHAAYKRITSILKY 1307
+L K ++ L+ +D +P D S + R+ + + S L
Sbjct: 144 TLEKALGFDY-LSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDK 195
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 34.8 bits (81), Expect = 0.14
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K ++ GG G G + V GA ++V+ + +G +AL ++ + +
Sbjct: 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDE--SGGRALEQELPGAVFILC--- 61
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATK 897
D+T E V L++E + G +D + N A E + + F L N
Sbjct: 62 --DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLE--LNLLG 117
Query: 898 YF--DKYS-RTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
+ K + + + G + SS+ G A Y
Sbjct: 118 TYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPY 154
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 34.9 bits (80), Expect = 0.14
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
K ++ G G G+ A L GA +VL R K QA + K + V V +
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKA--QAAADSVNKRFKVNVTAA 174
Query: 840 TDDITTEAGVVNLLTEA 856
+ +A + A
Sbjct: 175 --ETADDASRAEAVKGA 189
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 35.0 bits (81), Expect = 0.14
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 1192 TNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
+ + +L +K + + L G+S GG VAL AI
Sbjct: 60 MDETWNFDYITTLLDRILDKYKDKSIT------LFGYSMGGRVALYYAIN 103
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide
synthase, alpha- helical bundle, acyltransferase; NMR
{Saccharopolyspora erythraea} PDB: 2ju2_A
Length = 95
Score = 32.5 bits (75), Expect = 0.17
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1029 ILGLRDLKTVSLHSTLAELGMDSMMAVE 1056
+LG D K V + ELG DS+ AV
Sbjct: 32 VLGHDDPKAVRATTPFKELGFDSLAAVR 59
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica}
PDB: 3icw_A*
Length = 316
Score = 34.8 bits (79), Expect = 0.17
Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 16/222 (7%)
Query: 1153 PVGNNNTIFMVPGIEGIATV-----LEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLP 1207
P + I +VPG PL+ + D + ++
Sbjct: 61 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSAQLGYTPCWISPPPFMLND-TQVNTEYMVN 119
Query: 1208 HFKKRL-VHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKLP 1266
G +++ ++ +S GG+VA + +K L+ APDY T L
Sbjct: 120 AITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDR-LMAFAPDYKGTVLAGPL 178
Query: 1267 DWNAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTE 1326
D A + + + + T++ TD ++
Sbjct: 179 DALAVSAPSVWQQTTGSALTTALRNAGGLTQIVPTTNLYSATDE---IVQPQVSNSPLDS 235
Query: 1327 QALPTAEDYGLSKVCKKPVKVHFVDGNHFTVLDNIKSAQIIM 1368
L ++ VC + H L + S +
Sbjct: 236 SYLFNGKNVQAQAVCGPLFVID-----HAGSLTSQFSYVVGR 272
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 34.9 bits (81), Expect = 0.17
Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 22/163 (13%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ + +I GG G G L D V GAR + + +S + LR ++ +
Sbjct: 4 TGEVALITGGASGLGRALVDRFVAEGAR-VAVLDKSA-----ERLRELE-VAHGGNAVGV 56
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASL--------- 889
D+ + G +D + A + + PED +
Sbjct: 57 VGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNV 116
Query: 890 -GPKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNY 931
G +A K + + G V S + N G Y
Sbjct: 117 KGY-IHAVKAC---LPALVSSRGSVVFTISNAGFYPNGGGPLY 155
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 34.9 bits (81), Expect = 0.18
Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 47/239 (19%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
I L+ + C +T A +++ G + G GGVG A I + A
Sbjct: 159 IDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAV-FGLGGVGLAVIMGCKVAGASR 217
Query: 594 FTTVGT-PEKREFIRK---TFPFIKEENIGNSRDT--SFEQLVMKRTKGRGVDLVLNSL- 646
V +K ++ T I N +D ++++++ T G GVD +
Sbjct: 218 IIGVDINKDKFARAKEFGAT-ECI------NPQDFSKPIQEVLIEMTDG-GVDYSFECIG 269
Query: 647 AEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKM 706
+ ++A++ +G G + ++G+ E + L + WK
Sbjct: 270 NVKVMRAALEACHKGW-----GV-----SVVVGVAASGEEIATRPFQL----VTGRTWKG 315
Query: 707 S--------------LQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVI 751
+ + + + K I V V D++ +AF M +GK I V+
Sbjct: 316 TAFGGWKSVESVPKLVSEYMSKKIK---VDEFVTHNLSFDEINKAFELMHSGKSIRTVV 371
>2amw_A Hypothetical protein NE2163; all helical protein, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 83
Score = 32.2 bits (73), Expect = 0.18
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTL---AELGMDSMMAVEIKQTLEREFEVFLTPQDIRGLT 1078
+ + + ++L L + K S++ +DSM V + LE F+ + +I T
Sbjct: 7 VRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQT 66
Query: 1079 FAKLQDIA 1086
F L +A
Sbjct: 67 FETLGSLA 74
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 34.9 bits (81), Expect = 0.18
Identities = 46/232 (19%), Positives = 90/232 (38%), Gaps = 48/232 (20%)
Query: 542 DAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEIFTTVGT-P 600
++ + C +AT A ++ G + + G GGVG +AI + A VGT
Sbjct: 168 ESCLIGCGFATGYGAAVNTAKVTPGSTCAV-FGLGGVGFSAIVGCKAAGASRIIGVGTHK 226
Query: 601 EKREFIRK---TFPFIKEENIGNSRDT--SFEQLVMKRTKGRGVDLVLNSL-AEEKLQAS 654
+K + T + N +D +++ ++T G GVD + E + +
Sbjct: 227 DKFPKAIELGAT-ECL------NPKDYDKPIYEVICEKTNG-GVDYAVECAGRIETMMNA 278
Query: 655 VRCLAQG-GRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKMS------ 707
++ G G + +G LA+ N ++L + K S
Sbjct: 279 LQSTYCGSGVTVVLG---LASPNE--------RLPLDPLLL----LTGRSLKGSVFGGFK 323
Query: 708 -------LQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
+ ++K I+ V LV T D++ +AF +++G+ + ++I
Sbjct: 324 GEEVSRLVDDYMKKKIN---VNFLVSTKLTLDQINKAFELLSSGQGVRSIMI 372
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 34.9 bits (81), Expect = 0.19
Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 51/241 (21%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
+ D+ LE + C +++ A ++ G + + G G VG +AI + A
Sbjct: 164 VDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAV-FGLGCVGLSAIIGCKIAGASR 222
Query: 594 FTTVGT-PEKREFIRK---TFPFIKEENIGNSRDT--SFEQLVMKRTKGRGVDLVLNSL- 646
+ EK + T + N R+ + ++ + T G GVD L+
Sbjct: 223 IIAIDINGEKFPKAKALGAT-DCL------NPRELDKPVQDVITELTAG-GVDYSLDCAG 274
Query: 647 AEEKLQASVRCLAQG-GRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWK 705
+ L+A+V C G G +G + E + V + +
Sbjct: 275 TAQTLKAAVDCTVLGWGSCTVVG-------------AKVDEMTIPTVDV----ILGRSIN 317
Query: 706 MS--------------LQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVI 751
+ + K D + LV P + + +A M GK I ++
Sbjct: 318 GTFFGGWKSVDSVPNLVSDYKNKKFD---LDLLVTHALPFESINDAIDLMKEGKSIRTIL 374
Query: 752 I 752
Sbjct: 375 T 375
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 32.3 bits (74), Expect = 0.19
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1029 ILGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEVFLTP 1071
L + ++ +LG+DS++ VE T+ + + + L
Sbjct: 33 ALYT-EESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKA 74
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 34.2 bits (79), Expect = 0.19
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 18/159 (11%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
S+ I+ GG G G + ++ G ++ S + + +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQADSNILVDG----NK----- 51
Query: 840 TDDITTEAGVVNLLTEANKLGPVDGIFNLA-VVLKDALFENQTPEDFNASLGPKANATKY 898
+ E ++ + + VDG+F +A + ++ + + K +
Sbjct: 52 -NWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMI--KQSVWSS 108
Query: 899 FDKYSRTMCPTL---GQFVVFSSVSCGRGNAGQTNYGMA 934
++ L G + + + YGMA
Sbjct: 109 A-IAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMA 146
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 34.3 bits (79), Expect = 0.21
Identities = 31/167 (18%), Positives = 50/167 (29%), Gaps = 29/167 (17%)
Query: 773 VPRYYADSNKSYIICGGLGGFGLELADWLVLRGAR--KLVLTSRSGVKNGYQALRIKIWK 830
VPR S +I G G GL L L+ L T R+ + + L
Sbjct: 15 VPR--GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA--KELEDLAKN 70
Query: 831 SYDVQVLISTDDITTEAGVVNL---LTEANKLGPVDGIFNLA-VVLKDALFENQTPEDF- 885
++ +L D+ L + K ++ +FN A + K A ++
Sbjct: 71 HSNIHIL--EIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELL 128
Query: 886 -----NASLGPKANATKYF---------DKYSRTMCPTLGQFVVFSS 918
N + P K S+ M + SS
Sbjct: 129 DTLQTNT-VVP-IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 173
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 34.5 bits (80), Expect = 0.23
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 830 KSYDVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS 888
+ +++ D+ A + ++ EA + G +D + + + + T + ++
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162
Query: 889 LG---------PKANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
L +A + + G + SS RG GQ++Y +
Sbjct: 163 LQTNLIGAWHACRA-VLPSMIERGQG-----GSVIFVSSTVGLRGAPGQSHYAAS 211
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 34.2 bits (79), Expect = 0.24
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1194 PPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELA 1236
D E + + + V + LVG+S GG + +
Sbjct: 61 HCDNFAEAVEMIE-QTVQAHVTSEVPVILVGYSLGGRLIMHGL 102
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 34.5 bits (80), Expect = 0.25
Identities = 38/240 (15%), Positives = 87/240 (36%), Gaps = 47/240 (19%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
I LE + C ++T + ++ +G + + G GGVG + I + A
Sbjct: 160 IDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV-FGLGGVGLSVIMGCKAAGAAR 218
Query: 594 FTTVGT-PEKREFIRK---TFPFIKEENIGNSRDT--SFEQLVMKRTKGRGVDLVLNSL- 646
V +K ++ T + N +D ++++ + + G GVD +
Sbjct: 219 IIGVDINKDKFAKAKEVGAT-ECV------NPQDYKKPIQEVLTEMSNG-GVDFSFEVIG 270
Query: 647 AEEKLQASVRCLAQGGRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWKM 706
+ + ++ C + I +G+ + S + ++L + + WK
Sbjct: 271 RLDTMVTALSCCQEAYGVSVI----------VGVPPDSQNLSMNPMLL----LSGRTWKG 316
Query: 707 S--------------LQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVII 752
+ + + K + PL+ + P +K+ E F + +G+ I ++
Sbjct: 317 AIFGGFKSKDSVPKLVADFMAKKFA---LDPLITHVLPFEKINEGFDLLRSGESIRTILT 373
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 34.2 bits (79), Expect = 0.28
Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 50/240 (20%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
I L+ + C +T A +++ G + + G G VG AA+ A+
Sbjct: 161 IDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAV-FGLGAVGLAAVMGCHSAGAKR 219
Query: 594 FTTVGT-PEKREFIRK---TFPFIKEENIGNSRDT--SFEQLVMKRTKGRGVDLVLNSLA 647
V P+K E + T F+ N D Q++ K T G GVD L +
Sbjct: 220 IIAVDLNPDKFEKAKVFGAT-DFV------NPNDHSEPISQVLSKMTNG-GVDFSLECVG 271
Query: 648 EEK-LQASVRCLAQG-GRFLEIGKFDLANNNMLGMEVFMRETSFHGVMLDNFFFAEQEWK 705
++ ++ +G G + +G + + + + + L A + WK
Sbjct: 272 NVGVMRNALESCLKGWGVSVLVG---WTD---------LHDVATRPIQL----IAGRTWK 315
Query: 706 MS--------------LQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGKHIGKVI 751
S ++ L K + + + P + V +A M GK I V+
Sbjct: 316 GSMFGGFKGKDGVPKMVKAYLDKKVK---LDEFITHRMPLESVNDAIDLMKHGKCIRTVL 372
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology,
protein structure initiati alpha/beta hydrolase; HET:
MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 33.9 bits (78), Expect = 0.30
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 10/46 (21%)
Query: 1194 PPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELA 1236
PP + + +++ + G S G ++L A
Sbjct: 67 PPYAVEREIEDLAAIIDAAGGA-AF------VFGMSSGAGLSLLAA 105
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 33.9 bits (77), Expect = 0.31
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 1160 IFMVPGIEGIATVLEPLAKNINAQ-VLVFQFDH---TNPPDTIPE----MADSLLPHFKK 1211
+ + PG + + L + +Q +VF D + PD+ D L
Sbjct: 57 VVISPGFTAYQSSIAWLGPRLASQGFVVFTIDTNTTLDQPDSRGRQLLSALDYLTQRSSV 116
Query: 1212 RLVHGTDEIKLVGFSFGGMVALELA 1236
R + ++G S GG +LE A
Sbjct: 117 RTRVDATRLGVMGHSMGGGGSLEAA 141
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 33.6 bits (77), Expect = 0.40
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 1190 DHTNPPD-TIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHL 1248
+ + +++L P ++ +VG S GG+ A+ LA L + L
Sbjct: 120 AWREDGNYSPQLNSETLAPVLRE---LAPGAEFVVGMSLGGLTAIRLAAMAPDLVGE--L 174
Query: 1249 YLVDSAP 1255
LVD P
Sbjct: 175 VLVDVTP 181
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 33.6 bits (76), Expect = 0.45
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 1194 PPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYL 1250
+ A + + ++G S GG AL + L L L
Sbjct: 110 TNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHL--LIL 167
Query: 1251 VDSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQR 1291
++ V+ + + + L +PE+ +S +
Sbjct: 168 IEP----VVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKT 204
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 33.4 bits (77), Expect = 0.47
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 842 DITTEAGVVNLL--TEANKLGPVD-------GIFNLAVVLKDALFENQTPEDFNASL--G 890
D + E+ V +L + + G +D + ++ F ++ G
Sbjct: 62 DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVG 121
Query: 891 PKA--NATKYFDKYSRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMA 934
+ + Y +R M P +V SS YG+
Sbjct: 122 LRGHYFCSVYG---ARLMVPAGQGLIVVISSPG-SLQYMFNVPYGVG 164
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase; 1.60A
{Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A
1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A
Length = 282
Score = 33.1 bits (76), Expect = 0.54
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 1193 NPPDTIPEMADSLLPHFKKRLV--HGTDEIKLVGFSFGGMVALELAIK 1238
N + D + ++ ++ +VG +FGG +A+ A++
Sbjct: 73 NYNYSKDSWVDHI-----IGIMDALEIEKAHIVGNAFGGGLAIATALR 115
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 32.9 bits (76), Expect = 0.56
Identities = 40/167 (23%), Positives = 56/167 (33%), Gaps = 26/167 (15%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK-------NGYQALRIKIWKSY 832
NK II G GG GLE + L GAR +VL G A+ +
Sbjct: 10 ENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASVGRGAVHHVV---- 64
Query: 833 DVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLA--VVLKDALFENQTPEDFNASL 889
D+T E V L+ + G +D + N A D L T + ++ +
Sbjct: 65 ---------DLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTF 115
Query: 890 GPKANATKYFDKY-SRTMCPTLGQFVVF-SSVSCGRGNAGQTNYGMA 934
A T KY + G +V SS + T Y
Sbjct: 116 TVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACT 162
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 32.9 bits (76), Expect = 0.56
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 16/103 (15%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNAS---------LGP 891
D + ++ + LG +D I A V +++ TPEDF
Sbjct: 81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTV 140
Query: 892 KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
A + R G ++ SS + + +Y +
Sbjct: 141 MA-GAPRIIEGGRG-----GSIILISSAAGMKMQPFMIHYTAS 177
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 33.1 bits (76), Expect = 0.56
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1222 LVGFSFGGMVALELAIK 1238
L+G S GG ++ +K
Sbjct: 111 LLGNSMGGHSSVAFTLK 127
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 33.2 bits (76), Expect = 0.58
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 1216 GTDEIKLVGFSFGGMVALELAIK-LEQLGTKCHLYLVDSAPDYVLTSLRKLPDWNAKLNY 1274
G ++G S GGM+A A+ Q+ L LV+ +L W + ++
Sbjct: 112 GVARASVIGHSMGGMLATRYALLYPRQVE---RLVLVNPIGLEDWKALGV--PWRSVDDW 166
Query: 1275 FLDLMPEDATHSRTYQRNLAHAAYKR 1300
+ + A R YQ+ +A R
Sbjct: 167 YRRDLQTSAEGIRQYQQATYYAGEWR 192
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 33.0 bits (75), Expect = 0.58
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ ++ GG G G E+ L G +VLT R V G++A+ K+ S V+
Sbjct: 11 KRRCAVVTGGNKGIGFEICKQLSSNGIM-VVLTCRD-VTKGHEAVE-KLKNSNHENVVFH 67
Query: 840 TDDITTEAGVVNLLTE--ANKLGPVDGIFNLAVV 871
D+T ++ L + G +D + N A V
Sbjct: 68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAGV 101
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for structural
genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31
Length = 192
Score = 32.4 bits (73), Expect = 0.61
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 12/132 (9%)
Query: 1155 GNNN-TIFMVPGIEGIA-----TVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPH 1208
G ++++ G + L+ Q + + P + L
Sbjct: 1 GRGTKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPR-----LEDWLDT 55
Query: 1209 FKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKLPDW 1268
+ LV S G L L+ + LV S L +L+ L ++
Sbjct: 56 LSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILV-SGFAKSLPTLQMLDEF 114
Query: 1269 NAKLNYFLDLMP 1280
++
Sbjct: 115 TQGSFDHQKIIE 126
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 32.9 bits (76), Expect = 0.64
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 30/168 (17%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSG----------VKNGYQALRIKIW 829
+ +I G G G A L G + R+ V G QA+ ++
Sbjct: 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEA- 84
Query: 830 KSYDVQVLISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKD-ALFENQTPEDFNA 887
D++ E + N + + K G +D + A + A ++ P +++
Sbjct: 85 ------------DVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDE 132
Query: 888 SLGPKANATKYFDKY-SRTMCPT-LGQFVVFSSVS--CGRGNAGQTNY 931
++ T + G VV SS++ G T Y
Sbjct: 133 TIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAY 180
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 33.0 bits (76), Expect = 0.66
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 29/180 (16%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ +I GG G +A L +G ++V+ R + Q L ++ + ++
Sbjct: 10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS-EGAAQRLVAELNAARAGSAVLC 67
Query: 840 TDDITTEAGVVNLLTE-----ANKLGPVDGIFNLAVVLKDALFENQ-----------TPE 883
D++ + +++ + G D + N A
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 884 DFNASL-----GP----KANATKYFDKYSRTMCPTLGQFVVFSSVSCGRGNAGQTNYGMA 934
P +A + + V G Y MA
Sbjct: 128 QVAELFGSNAVAPLFLIRA-FARRQGE-GGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMA 185
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 32.5 bits (75), Expect = 0.70
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 12/100 (12%)
Query: 842 DITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALF---ENQTPEDFNASLGPKANATK 897
E L+ +D I + + + E + D A +
Sbjct: 52 IALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFE--ALSIF 109
Query: 898 YFDKYSRTMCPTL-----GQFVVFSSVSCGRGNAGQTNYG 932
++ L + +S + A YG
Sbjct: 110 PI-LLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYG 148
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 32.7 bits (75), Expect = 0.75
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 15/92 (16%)
Query: 1194 PPD----TIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKC 1246
D + +LL G + +G S GG++ + LA
Sbjct: 72 AKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAA- 124
Query: 1247 HLYLVDSAPDYVLTSLRKLPDWNAKLNYFLDL 1278
L D P+ L ++ + + F
Sbjct: 125 -AVLNDVGPEVSPEGLERIRGYVGQGRNFETW 155
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 32.7 bits (75), Expect = 0.80
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 1194 PPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIK 1238
A ++ L D LVG + GG AL A++
Sbjct: 83 DEQRGLVNARAVK-GLMDAL--DIDRAHLVGNAMGGATALNFALE 124
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro
structure initiative, PSI; 2.00A {Thermotoga maritima}
SCOP: a.28.1.1
Length = 100
Score = 30.5 bits (69), Expect = 0.85
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 1020 TNIVDAVINI----LGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEV 1067
++ + I +G DL+TV +T ELG DS+ +++ E EF +
Sbjct: 16 KKLIAKFVEIASEKMGK-DLETVDEENTFKELGFDSIDVIDLVMFFEDEFAL 66
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 32.1 bits (74), Expect = 0.85
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIST 840
+ +I G G G A L +G R + L +R + QAL ++ + +
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYR-VGLMARD--EKRLQALAAELEGALPLPG---- 57
Query: 841 DDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNA 887
D+ E + G + + N A V T E++
Sbjct: 58 -DVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRL 104
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 32.2 bits (74), Expect = 0.91
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 16/158 (10%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALRIKIWKSYDVQVLIS 839
+ K ++ G G G A+ L+L+GA K+ L + + + + L
Sbjct: 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHE-QFEPQKTLFI 63
Query: 840 TDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKY 898
D+ + + + + + G +D + N A V +++ +L +
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQINLVSVIS 115
Query: 899 FDKY-SRTM----CPTLGQFVVFSSVSCGRGNAGQTNY 931
M G + SS++ A Q Y
Sbjct: 116 GTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVY 153
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 32.4 bits (74), Expect = 0.97
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1216 GTDEIKLVGFSFGGMVALELAIK 1238
G + L+ FG +VALE+ +
Sbjct: 93 GVERFGLLAHGFGAVVALEVLRR 115
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 32.3 bits (74), Expect = 1.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1222 LVGFSFGGMVALELAI 1237
+VG S GG V L+L +
Sbjct: 107 IVGNSMGGAVTLQLVV 122
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 32.1 bits (73), Expect = 1.2
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 9/50 (18%)
Query: 1190 DHTNPPDTIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELA 1236
P E +L G + V S GG V +EL
Sbjct: 68 PSEVPDFGYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELL 111
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora
echinospora}
Length = 102
Score = 30.1 bits (67), Expect = 1.3
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 1008 VVAEKKAGSGGATNIVDAVINILGLR---DLKTVSLHSTL-AELGMDSMMAVEIKQTLER 1063
+ AT ++ V +++ R ++ + S +L M S+ ++ R
Sbjct: 1 MARADDTALPAATGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAAR 60
Query: 1064 EFEVFLTPQDIRGLTFAKLQDIAVSFENDDKSKP 1097
+ A ++++A + E ++ P
Sbjct: 61 AMGL-SAVAMPTNFATATVREMAEALEAREREAP 93
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 32.2 bits (74), Expect = 1.4
Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 63/234 (26%)
Query: 534 IPDQWTLEDAATVPCVYATAVYA-MFICGQMQKGESILIHAGSGGVGQAAINLARYMDAE 592
PD L+ A + C T VY+ + G + G+ I I G GG+G A+ A+ ++
Sbjct: 156 FPDNMPLDGGAPLLCAGIT-VYSPLKYFGLDEPGKHIGI-VGLGGLGHVAVKFAKAFGSK 213
Query: 593 I--FTTVGTPEKREFIRKTF---PFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSL- 646
+ +T +P K+E K F F+ SRD M+ G +D +++++
Sbjct: 214 VTVIST--SPSKKEEALKNFGADSFL------VSRDQEQ----MQAAAGT-LDGIIDTVS 260
Query: 647 AEEKLQASVRCLAQGGRF---------LEIGKFDLANNN------MLGMEVFMRETSFHG 691
A L L G+ LE+ F L +G +E
Sbjct: 261 AVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQE----- 315
Query: 692 VMLDNFFFAEQEWKMSLQKALQKAIDAGAVQPLVRTIFPEDKVEEAFRYMAAGK 745
M+D F A+ + + I D + A +A
Sbjct: 316 -MID--FAAKH-----------------NITADIEVI-STDYLNTAMERLAKND 348
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium loti}
Length = 314
Score = 32.0 bits (73), Expect = 1.4
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 25/115 (21%)
Query: 1194 PPD--TIPEMAD---SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCH- 1247
P + AD L+ LVG S G ++ A K +
Sbjct: 111 PETGYEANDYADDIAGLIRT------LARGHAILVGHSLGARNSVTAAAK--------YP 156
Query: 1248 -----LYLVDSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATHSRTYQRNLAHAA 1297
+ +D P +L L + + + + N+ A
Sbjct: 157 DLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEAYLAGRYPNIPADA 211
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 31.9 bits (73), Expect = 1.4
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 1189 FDHTNPPDTIPEMADSLLPHFKKRLVH-GTDEIKLVGFSFGGMVALELAIK 1238
+ H++ + K G + LVG + GG A+ A+
Sbjct: 76 YGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALD 126
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 31.8 bits (72), Expect = 1.5
Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 21/169 (12%)
Query: 1155 GNNNTIFMVPGIEGIATVLEPLAKNINAQ---VLVFQF---DHTNPPD-----TIPEMAD 1203
G + + ++ G + +A+ + V V F P D
Sbjct: 20 GTDTGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIWWA 79
Query: 1204 SLLPHFKKRLVHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLTSLR 1263
+ ++ + G S GG+ A++ L + V S+P +L
Sbjct: 80 ESSAAVA-HMTAKYAKVFVFGLSLGGIFAMKALETLPGI----TAGGVFSSP--ILPGKH 132
Query: 1264 KLPDWNAKLNYFLDLMP---EDATHSRTYQRNLAHAAYKRITSILKYTD 1309
L K +++ + +++T Y A + T++ +
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLN 181
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase,
alternative splicing, hydrolase, mitochondrion,
polymorphism, serine esterase; 2.10A {Homo sapiens}
Length = 446
Score = 32.1 bits (72), Expect = 1.5
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 1162 MVPGIEGIATVLEPLAKNINAQ-VLVFQFDHTNPPDTIPEMADSLLPHF-------KKRL 1213
+ G G +LE A + + V + N D M L +F
Sbjct: 179 DMFGTGG--GLLEYRASLLAGKGFAVMALAYYNYEDLPKTMETLHLEYFEEAMNYLLSHP 236
Query: 1214 VHGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLYLVDSAPDYVLT 1260
+ L+G S GG + L +A L+ + + + L
Sbjct: 237 EVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLR 283
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 31.5 bits (72), Expect = 1.6
Identities = 27/173 (15%), Positives = 50/173 (28%), Gaps = 22/173 (12%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVL-TSRSGVKNGYQALRIKIWKSYDVQVLI 838
S S ++ G G GL L LV + ++ T+R L+ V L
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD--VEKATELKSIKDSRVHVLPLT 59
Query: 839 STDDITTEAGVVNLLTEANKLGPVDGIFNLA-VVLKDALFENQTPEDFNA-----SLGPK 892
T D + + V+ + E + + N A V+L +
Sbjct: 60 VTCDKSLDT-FVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV- 117
Query: 893 ANATKYF---------DKYSRTMCPTLGQFVVFSSV--SCGRGNAGQTNYGMA 934
T+ + + + + SS S +G + +
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVL 170
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic
anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma
phagocytophilum}
Length = 88
Score = 29.7 bits (67), Expect = 1.6
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 1022 IVDAVINILGL--RDLKTVSLHSTLAE-LGMDSMMAVEIKQTLEREFEV 1067
++++VI L L + +S + LA+ +DS+ V++ +LE F +
Sbjct: 13 VMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSL 61
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 31.3 bits (72), Expect = 1.6
Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 44/191 (23%)
Query: 785 IICGGLGGFGLELADWLVLRGARKLVLTSRS--GVKNGYQALRIKIWKSYDVQVLISTDD 842
++ GG G G +A+ LV RG R + + SR+ A+ + D+
Sbjct: 6 LVTGGSRGIGRAIAEALVARGYR-VAIASRNPEEAAQSLGAVPLP----TDL-------- 52
Query: 843 ITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDFNASLGPKANATKYFDK 901
+ L+ A LG + + + A V + E++ L + F
Sbjct: 53 --EKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVL--YLHLDVAF-L 107
Query: 902 YSRTMCPTL-----GQFVVFSSVSC--GRGNAGQTNYGMANSIMERICEARRAEGLPGL- 953
++ P + G+ + SV+ G Y A + L GL
Sbjct: 108 LAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKT------------ALLGLT 155
Query: 954 ---AVEWGAVG 961
A EW +G
Sbjct: 156 RALAKEWARLG 166
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 31.3 bits (71), Expect = 1.7
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 1173 LEPLAKNINAQ-VLVFQFDH----TNPPD----TIPEMADSLLPHFKKRLVHGTDEIKLV 1223
+ PLA+ V T+ D T + S+ + L I +
Sbjct: 56 MRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYG-WLKQRCQTIFVT 114
Query: 1224 GFSFGGMVALELAIK 1238
G S GG + L LA
Sbjct: 115 GLSMGGTLTLYLAEH 129
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 31.6 bits (71), Expect = 1.7
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 1098 VSTEASGGQVTALS-VEDIPDVGIQYLMRTIGDEILANKPVIRLPSLKNNGSTVEEPVGN 1156
V+T A A + E P+ L G ++ + R + G T+ P N
Sbjct: 34 VATVALAAPAQAANPYERGPNPTESMLEARSGPFSVSEERASRFGADGFGGGTIYYPREN 93
Query: 1157 NNT--IFMVPGIEGIATVLEPLAKNINAQ-VLVFQFDHTNPPDTIPEMA-------DSLL 1206
N I + PG G + + L + I + +V D D A D +L
Sbjct: 94 NTYGAIAISPGYTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSRARQLNAALDYML 153
Query: 1207 PHFKKRLVHG--TDEIKLVGFSFGGMVALELA 1236
+ + + ++G S GG L LA
Sbjct: 154 TDASSAVRNRIDASRLAVMGHSMGGGGTLRLA 185
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics,
unknown function, PSI- 2, protein structure initiative;
NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A*
2lml_A* 2kwm_A*
Length = 87
Score = 29.4 bits (66), Expect = 1.8
Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAEL-GMDSMMAVEIKQTLEREFEVFLTPQDIRGL-TF 1079
+ + D ++ ++ ++ DS+ + + +LE +++ +++ L
Sbjct: 7 LTPIFRQVFDD-DSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNV 65
Query: 1080 AKLQDI 1085
L D+
Sbjct: 66 GDLADL 71
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold,
oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A* 1ad3_A*
Length = 469
Score = 31.8 bits (73), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 1254 APDYVLTSLRKLPDWNAKL-NYFLDLMPEDATHSRTYQR--NLAHAAYKRITSILK 1306
APDY+L KL + EDA SR Y R + H ++R+ +++
Sbjct: 262 APDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARH--FQRVMGLIE 315
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 2.1
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 1266 PDW-NAKLNYFLDLMPEDATHSRTYQRNLAHAAYKRIT-SILKYTDPKHKAFGGNITL-- 1321
W ++K + + + ++ L H+ + I + +P+ K + +
Sbjct: 874 TGWVDSKTK---EPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEE 930
Query: 1322 -LRPTEQALPTAEDYGLSKVCKKPVKVHFVD-GNHFTVLDNIKSAQIIMHEDSTDFKT 1377
L P E + TAE + + KV + + + + F
Sbjct: 931 DLEPFEASKETAEQF----KHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDR 984
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain,
PRE-cleavage form IDP00167, structural genomics; HET:
IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Length = 234
Score = 30.9 bits (69), Expect = 2.2
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 1185 LVFQFDHTNPPDTIPEMADSLLPHFKKRLV-HGTDEIKLVGFSFGGMVALELAIKLEQLG 1243
+V Q D + L + +LV HG D + G A ELA+KL +
Sbjct: 85 VVVQLDSDGNYRVVYGDPSKLDGKLRWQLVGHGRDHSETNNTRLSGYSADELAVKLAKFQ 144
Query: 1244 TKCHL-YLVDSAPDYV 1258
+ +++ PD++
Sbjct: 145 QSFNQAENINNKPDHI 160
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 31.3 bits (71), Expect = 2.5
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVKNGYQALR--IKIWKSYDVQVL 837
S K +I G GFG A+ L G R + + R V + + DV +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVGRNASNVEAIAGFARDNDVDLR 62
Query: 838 ISTDDITTEAGVVNLLTEA-NKLGPVDGIFNLAVVLKDALFENQTPEDF 885
D+ ++ V + + + G +D + + A + E TPE F
Sbjct: 63 TLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQF 111
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein
structure initiative, midwest center FO structural
genomics; 2.00A {Lactobacillus plantarum}
Length = 250
Score = 30.9 bits (69), Expect = 2.5
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 1168 GIATVLEPLAKNINAQVLVFQF-DHTNPPDTIPEMADSLLPHFKK-RLVHGTDEIKLVGF 1225
G +A N N +V F ++ + I + A L FK + + +G
Sbjct: 46 GTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVWLNTAFKALVKTYHFNHFYALGH 105
Query: 1226 SFGGMVALELAIKLEQLGTKCHL 1248
S GG++ + + K H+
Sbjct: 106 SNGGLIWTLFLERYLKESPKVHI 128
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 31.0 bits (71), Expect = 3.0
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 534 IPDQWTLEDAATVPCVYATAVYA-MFICGQMQKGESILIHAGSGGVGQAAINLARYMDAE 592
IP+ +E AA + C T VY+ + G Q G I G GGVG + +A+ M
Sbjct: 149 IPEGMAVEQAAPLLCAGVT-VYSPLSHFGLKQPGLRGGI-LGLGGVGHMGVKIAKAMGHH 206
Query: 593 I--FTTVGTPEKREFIRKTF---PFIKEENIGNSRDTSFEQLVMKRTKGRGVDLVLNSL- 646
+ ++ + +KRE + ++ D + M +D V++++
Sbjct: 207 VTVISS--SNKKREEALQDLGADDYV------IGSDQAK----MSELADS-LDYVIDTVP 253
Query: 647 AEEKLQASVRCLAQGGRFLEIG 668
L+ + L G+ + +G
Sbjct: 254 VHHALEPYLSLLKLDGKLILMG 275
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid
(R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR;
1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A
2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B
1qge_D 1qge_E
Length = 320
Score = 30.8 bits (69), Expect = 3.0
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 1170 ATVLEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKKRLVH-GTDEIKLVGFSFG 1228
+ E L + A V V D + LL + K L G ++ LVG S G
Sbjct: 31 YGIQEDLQQR-GATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQG 89
Query: 1229 GMVALELA 1236
G+ + +A
Sbjct: 90 GLTSRYVA 97
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 30.2 bits (68), Expect = 3.1
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 1222 LVGFSFGGMVALELAIK 1238
++G S GG + + ++
Sbjct: 104 IMGASMGGGMVIMTTLQ 120
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone
fold, lipid binding protein; NMR {Rhizobium
leguminosarum} SCOP: i.11.1.1
Length = 92
Score = 28.9 bits (64), Expect = 3.4
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 1034 DLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEV 1067
L ++ + L LG+DS+ ++ LE+ + +
Sbjct: 28 ALGEITTDTELTSLGIDSLGLADVLWDLEQLYGI 61
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix
bundle, ligand transport; NMR {Mycobacterium
tuberculosis} SCOP: a.28.1.1
Length = 115
Score = 29.0 bits (65), Expect = 3.5
Identities = 18/102 (17%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAE-LGMDSMMAVEIKQTLEREFEVFLTPQDIRGLTFA 1080
I + + + G+ + ++ + + L +DS+ VEI E ++ V + +D+ GL
Sbjct: 12 IAEIIEEVTGI-EPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLR-- 68
Query: 1081 KLQDIAVSF-ENDDKSKPVSTEASGGQVTALSVEDIPDVGIQ 1121
+ D V++ + ++ P + +A ++ + + + + +V +
Sbjct: 69 TVGD-VVAYIQKLEEENPEAAQALRAKIESENPDAVANVQAR 109
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 30.9 bits (68), Expect = 3.5
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 1276 LDLMPEDATHSRTYQRNLAHAAYKRITSILKYTDP---KHKAFGGNITLLRPTEQALPTA 1332
L L + Q ++ A+ + S+ K T P A TL E+AL A
Sbjct: 293 LHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352
Query: 1333 EDYGLSKVCKKPVKVHFVDGNHFTVLDNIKSAQIIMHE 1370
+++ ++ + F +LD + ++++
Sbjct: 353 LRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQV 390
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 30.5 bits (69), Expect = 3.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 1215 HGTDEIKLVGFSFGGMVALELAIKL 1239
I LVG + GG+VA LA
Sbjct: 116 PHVRNIYLVGHAQGGVVASMLAGLY 140
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 30.4 bits (69), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 1215 HGTDEIKLVGFSFGGMVALELAIK 1238
+I + G S GG+ + A
Sbjct: 97 DFVTDIYMAGHSQGGLSVMLAAAM 120
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 30.5 bits (68), Expect = 4.5
Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 731 EDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICTPKVKQLLAVPRYYADSNKSY--IICG 788
+ +A + + + K + K I + + + PK+ +L + R ++ I+
Sbjct: 309 KAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368
Query: 789 GLGGFGLELADWLVLRGARKLVLTSRSGVKNGY------QALRIKIWKSYDVQVLISTD 841
++ + LV G + ++ +N Q L + + + VL++T
Sbjct: 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS 427
>3o0d_A YALI0A20350P, triacylglycerol lipase; alpha/beta-hydrolase, lipids
binding, glycosylation, extracellular, hydrolase; HET:
NAG; 1.70A {Yarrowia lipolytica}
Length = 301
Score = 30.0 bits (67), Expect = 4.7
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 1200 EMADSLLPHFKKRLV-HGTDEIKLVGFSFGGMVALELAIKLEQLGTKCHLY 1249
+ + P + + +I + G S GG AL I L+ G +
Sbjct: 135 NTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVV 185
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 30.2 bits (69), Expect = 5.1
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 534 IPDQWTLEDAATVPCVYATAVYAMFICGQMQKGESILIHAGSGGVGQAAINLARYMDAEI 593
+ LE A + C T Y+ ++ KG + + AG GG+G A+ A M AE+
Sbjct: 146 VDKNAPLEKVAPLLCAGIT-TYSPLKFSKVTKGTKVGV-AGFGGLGSMAVKYAVAMGAEV 203
Query: 594 --FTTVGTPEKREFIRK 608
F K++
Sbjct: 204 SVFAR--NEHKKQDALS 218
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 29.8 bits (67), Expect = 5.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 1216 GTDEIKLVGFSFGGMVALELAIKL 1239
G + ++V S G V +++ +L
Sbjct: 85 GIRDFQMVSTSHGCWVNIDVCEQL 108
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 30.0 bits (68), Expect = 5.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1222 LVGFSFGGMVALELAIK 1238
+VG S GG L +++
Sbjct: 110 IVGNSMGGATGLGVSVL 126
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 29.5 bits (66), Expect = 6.0
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 1216 GTDEIKLVGFSFGGMVALELAIK 1238
++ S GM +L
Sbjct: 101 ELGPPVVISPSLSGMYSLPFLTA 123
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 28.7 bits (65), Expect = 6.2
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 725 VRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICT 764
V + + + A +YM IG + I D+ + T
Sbjct: 18 VTCVGEHETLTAAAQYMRE-HDIGALPICGDDDRLHGMLT 56
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold,
structural genomics, structural G of pathogenic protozoa
consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 29.7 bits (66), Expect = 7.7
Identities = 30/225 (13%), Positives = 56/225 (24%), Gaps = 39/225 (17%)
Query: 1123 LMRTIGDEILANKPVIRLPSLKNNGSTVEEPVGNNNTIFMVPGI-EGIATV--LEPLAKN 1179
M E + + + V G E + + LA+
Sbjct: 4 SMYRSRPEPVQGHLFTYYKDPYCKIPVFMMNMDARRCVLWVGGQTESLLSFDYFTNLAEE 63
Query: 1180 INAQVLVFQFD---------HTNPPDTIPEMADSLLPHFKKRLVHGTDEIKLVGFSFGGM 1230
+ Q + + ++ D L+ + H +E+ L S G
Sbjct: 64 LQGDWAFVQVEVPSGKIGSGPQDHAHDAEDVDD-LIGILLRD--HCMNEVALFATSTGTQ 120
Query: 1231 VALELAIKLEQLGTKCHLYLVDSAPDYVLTSLRKLPDWNAKLNYFLDLMPEDATHS-RTY 1289
+ EL L H + +L + D PE
Sbjct: 121 LVFEL------LENSAHKSSITRV---ILHG--VVCDPENP-----LFTPEGCAARKEHV 164
Query: 1290 QRNLAHAAYKRITSILKYTDPKHKAFGGNITLLRPTEQALPTAED 1334
++ +A + K + IT R PT ++
Sbjct: 165 EKLMAEGRGEDSL-------AMLKHYDIPITPARLAGGGFPTLQE 202
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta
superfamily, structural genomics; HET: MSE TLA P6G; 1.35A
{Xanthomonas campestris PV}
Length = 176
Score = 29.1 bits (65), Expect = 7.7
Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 1170 ATVLEPLAKNINAQVLVF----------QFDHTNPPDTIPEMADSLLPHFKKRLVHGTDE 1219
T L +A+ + + + + + R
Sbjct: 22 VTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIA------RAATEKGP 75
Query: 1220 IKLVGFSFGGMVALELAIKLEQLG 1243
+ L G S G +A ++++++
Sbjct: 76 VVLAGSSLGSYIAAQVSLQVPTRA 99
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 29.5 bits (67), Expect = 8.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 780 SNKSYIICGGLGGFGLELADWLVLRGARKLVLTSRSGVK 818
+ ++ +I G G G A L RGA +++ R K
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGAT-VIMAVRDTRK 52
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle,
biosynthetic protein; NMR {Spinacia oleracea} PDB:
2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Length = 82
Score = 27.3 bits (61), Expect = 8.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 1020 TNIVDAVINI----LGLRDLKTVSLHSTLAELGMDSMMAVEIKQTLEREFEV 1067
+D V +I L L V+ S ++LG DS+ VEI LE EF +
Sbjct: 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGI 54
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 28.9 bits (65), Expect = 8.6
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 725 VRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICT 764
+T+ V +A + M H+ +++K + + +
Sbjct: 19 FKTVNWNTTVFDAVKIMNE-NHLYGLVVKDDNGNDVGLLS 57
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 8.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 781 NKSYIICGGLGGFGLELADWLVLRGARKLVL 811
NK + + GLG FG + L G L +
Sbjct: 6 NKQFAVI-GLGRFGGSIVKELHRMGHEVLAV 35
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 29.0 bits (66), Expect = 9.3
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 1173 LEPLAKNINAQVLVFQFDHTNPPDTIPEMADSLLPHFKK 1211
L+ L + + + Q D N I EM SL +
Sbjct: 37 LQELKDELGDNLYIAQLDVRNRAA-IEEMLASLPAEWCN 74
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A*
2lpk_A 3lmo_A
Length = 101
Score = 27.8 bits (62), Expect = 9.7
Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 1022 IVDAVINILGLRDLKTVSLHSTLAE-LGMDSMMAVEIKQTLEREFEV 1067
+ + + +T++ S + LG+DS+ ++I +++ F +
Sbjct: 8 VATIIAETCDI-PRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGI 53
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 28.3 bits (64), Expect = 9.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 725 VRTIFPEDKVEEAFRYMAAGKHIGKVIIKIRDEEPTKICT 764
+ + P V+EA R M +G +++ D T
Sbjct: 17 LLGVKPSTSVQEASRLMME-FDVGSLVVINDDGNVVGFFT 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,394,178
Number of extensions: 1370895
Number of successful extensions: 3836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3536
Number of HSP's successfully gapped: 382
Length of query: 1392
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1287
Effective length of database: 3,770,088
Effective search space: 4852103256
Effective search space used: 4852103256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)