RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11190
(248 letters)
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 303 bits (779), Expect = e-105
Identities = 135/247 (54%), Positives = 177/247 (71%), Gaps = 2/247 (0%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M SILITGCNRGLGLG++K L+ L P H+F TCRN+++A EL LA+ HSN+H++E+
Sbjct: 21 MNSILITGCNRGLGLGLVKALLNLPQ-PPQHLFTTCRNREQAKELEDLAKNHSNIHILEI 79
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
D+ +F D L DI V KDQGLNVL NNAGIA K R+ ++ +++ D N P
Sbjct: 80 DLRNFD-AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ML K LPLLKKA++AN + P+G RAAI+N+SSI+GSI+ NT GG + YR SK+ALNA
Sbjct: 139 IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNA 198
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAHNGGFF 240
AT+SLS+DL +I+ ++HPGWVKTDMGGS+APL+V +T I+Q I LGE NGGF
Sbjct: 199 ATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFV 258
Query: 241 EYTGKAI 247
Y G +
Sbjct: 259 NYDGTPL 265
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 289 bits (742), Expect = 1e-99
Identities = 96/251 (38%), Positives = 142/251 (56%), Gaps = 9/251 (3%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
S+++TG NRG+GLG+++ LV N + HI AT R+ +KA EL ++ S +HV+ L
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATELKSIK--DSRVHVLPL 58
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VT D + ++V GL++L+NNAG+ + + + VN T+
Sbjct: 59 TVTCDK-SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH----PYRCSKA 176
++LT+ +LPLLK A+ S L SRAA++ +SS +GSI DNT G YR SKA
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAHN 236
A+N R+L++DLK D ++ PGWV+T++GG NA L V +TA +I L +HN
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHN 237
Query: 237 GGFFEYTGKAI 247
G FF K
Sbjct: 238 GRFFMRNLKPY 248
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 138 bits (350), Expect = 4e-40
Identities = 69/269 (25%), Positives = 101/269 (37%), Gaps = 69/269 (25%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIE 59
+ L+TG N+G+GL +++ L L + T R+ + + L + + +
Sbjct: 4 IHVALVTGGNKGIGLAIVRDLCRL---FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 60
Query: 60 LDVTDFSKQQDV--LFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
LD+ D Q + L + + GL+VLVNNAGIA K Q N
Sbjct: 61 LDIDD---LQSIRALRDFLRK--EYGGLDVLVNNAGIAFKVADPTPFH-IQAEVTMKTNF 114
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIE---------------- 161
+ +LPL+K R +VNVSSIM
Sbjct: 115 FGTRDVCTELLPLIKP-----------QGR--VVNVSSIMSVRALKSCSPELQQKFRSET 161
Query: 162 --------------DNTQGGFHP--------YRCSKAALNAATRSLSIDL----KGDKII 195
++T+ G H Y +K + +R + L KGDKI+
Sbjct: 162 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKIL 221
Query: 196 ATAMHPGWVKTDMGGSNAPL--EVGAATA 222
A PGWV+TDM G A E GA T
Sbjct: 222 LNACCPGWVRTDMAGPKATKSPEEGAETP 250
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 124 bits (313), Expect = 2e-34
Identities = 67/313 (21%), Positives = 102/313 (32%), Gaps = 94/313 (30%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
+ ++TG N+G+G + K L G + TCR+ K E + H N+ +
Sbjct: 13 RCAVVTGGNKGIGFEICKQLSSNG----IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQ 68
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLK-------------- 105
LDVTD L I L++LVNNAG+A K
Sbjct: 69 LDVTDPIATMSSLADFIKT--HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELV 126
Query: 106 ---------------PEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAI 150
E + +N +T+ ++PLL+ + I
Sbjct: 127 KIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPR-----------I 175
Query: 151 VNVSSIMGS----------------------------------IEDNTQG------GFHP 170
VNVSS GS ++N
Sbjct: 176 VNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAA 235
Query: 171 YRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPL--EVGAATAGIIQFI 228
Y SKA LNA TR L+ + + PG VKT+M E GA +++
Sbjct: 236 YTTSKACLNAYTRVLANKIPK--FQVNCVCPGLVKTEMNYGIGNYTAEEGAEH--VVRIA 291
Query: 229 QSLGEAHNGGFFE 241
+ +G F++
Sbjct: 292 LFPDDGPSGFFYD 304
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 109 bits (274), Expect = 4e-29
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K IL+TG +RG+G ++ VL L + ++ R++ +L + + D
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKD--TVVYGVARSEAPLKKLKE--KYGDRFFYVVGD 58
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+T+ S + + ++ VK G ++ LV NAG+ + + + +N +
Sbjct: 59 ITEDSVLKQL----VNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSI 114
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ L LP LKK + G+ +V VSS ++ ++ G Y SKAALN
Sbjct: 115 VSLVGIALPELKKTN--------GN----VVFVSSDACNMYFSSWGA---YGSSKAALNH 159
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+L+ + + + A A+ PG V TDM
Sbjct: 160 FAMTLANEERQ--VKAIAVAPGIVDTDM 185
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 108 bits (272), Expect = 4e-29
Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 27/221 (12%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH-SNLHVIE 59
+ I++TG GLG + LV G + R + L + + I
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERG----HQVSMMGRRYQR---LQQQELLLGNAVIGIV 55
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D+ + DV F + ++++ AG +F +G+ EQ+ N+ +
Sbjct: 56 ADLAH-HEDVDVAFAAAVE--WGGLPELVLHCAGTG-EFGPVGVYTAEQIRRVMESNLVS 111
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+++ + + L+ + + NV S + + Y SK +
Sbjct: 112 TILVAQQTVRLIGERG------------GVLANVLSSAAQV---GKANESLYCASKWGMR 156
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAA 220
SL +LK + ++P ++++ + ++
Sbjct: 157 GFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDPSGF 197
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 107 bits (270), Expect = 2e-28
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 28/216 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++ G G+GL ++ LV G A + T RN+ + +H + D
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEGG----AEVLLTGRNESNIAR--IREEFGPRVHALRSD 62
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+ D ++ + + + G +++L NAG++ + + F VN
Sbjct: 63 IADLNEIAVL----GAAAGQTLGAIDLLHINAGVS-ELEPFDQVSEASYDRQFAVNTKGA 117
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ + PL+++ +IV SS+ G Y SKAAL +
Sbjct: 118 FFTVQRLTPLIREG-------------GSIVFTSSVADEG---GHPGMSVYSASKAALVS 161
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLE 216
L+ +L I ++ PG++ T G E
Sbjct: 162 FASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITE 197
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 107 bits (269), Expect = 3e-28
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 32/242 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK----AVELLALAQQHSNLHV 57
K +ITG + G+G + G A + T R+ ++ ++LA N++
Sbjct: 7 KVAIITGSSNGIGRATAVLFAREG----AKVTITGRHAERLEETRQQILAAGVSEQNVNS 62
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHF 113
+ DVT + Q ++ +S + G L++LVNNAG A ++ E
Sbjct: 63 VVADVTTDAGQDEI----LSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATL 118
Query: 114 LVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRC 173
+N+ + + LTK +P L ++ IVN+SSI + F Y
Sbjct: 119 NLNLRSVIALTKKAVPHLSS------------TKGEIVNISSIASGLHATP--DFPYYSI 164
Query: 174 SKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGE 233
+KAA++ TR+ +IDL I ++ PG V T G + E + + ++ E
Sbjct: 165 AKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPE--ETSKKFYSTMATMKE 222
Query: 234 AH 235
Sbjct: 223 CV 224
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 106 bits (266), Expect = 1e-27
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 32/216 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K L+TG + G G + + V G+ + T R + +L+A I LD
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDT----VIGTARRTEALDDLVAAY--PDRAEAISLD 59
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGL---LKPEQMTDHFLVNV 117
VTD + V +DV+ G ++VLVNNAG +G ++ D F ++V
Sbjct: 60 VTDGERIDVV----AADVLARYGRVDVLVNNAGRTQ----VGAFEETTERELRDLFELHV 111
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
P LT+ +LP +++ GS +VN+SS G + + GF Y +KAA
Sbjct: 112 FGPARLTRALLPQMRER---------GSGS--VVNISSFGGQL---SFAGFSAYSATKAA 157
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNA 213
L + L+ ++ I + PG +T++ G A
Sbjct: 158 LEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGA 193
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 105 bits (263), Expect = 3e-27
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 30/240 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKA----VELLALAQQHSNLHV 57
KS++ITG + G+G + G A + T RN+D+ ++L ++
Sbjct: 27 KSVIITGSSNGIGRSAAVIFAKEG----AQVTITGRNEDRLEETKQQILKAGVPAEKINA 82
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGL-LKPEQMTDHFLV 115
+ DVT+ S Q D+ I+ + G +++LVNNAG E F +
Sbjct: 83 VVADVTEASGQDDI----INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL 138
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N A + +T+ L K ++ IVNVSSI+ + ++ G+ Y C+K
Sbjct: 139 NFQAVIEMTQKTKEHLIK------------TKGEIVNVSSIVAGPQAHS--GYPYYACAK 184
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAH 235
AAL+ TR +IDL + ++ PG V T G+ E A+ + FI S E
Sbjct: 185 AALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPE--TASDKLYSFIGSRKECI 242
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 104 bits (261), Expect = 4e-27
Identities = 40/213 (18%), Positives = 83/213 (38%), Gaps = 21/213 (9%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVEL---LALAQQHSNLHVI 58
++TG +RG G + L L + + + + R++ +L L Q + +
Sbjct: 7 AVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLA 65
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLV 115
D+ + Q +L + +L+NNA L + ++ +++ +
Sbjct: 66 AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N+T+ L LT L + + +VN+SS+ G+ Y K
Sbjct: 126 NLTSMLCLTSGTLNAFQDS---------PGLSKTVVNISSLCAL---QPYKGWGLYCAGK 173
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AA + + L+ + ++++ A PG + DM
Sbjct: 174 AARDMLYQVLAAEEPSVRVLSYA--PGPLDNDM 204
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 103 bits (260), Expect = 7e-27
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIELDVT 63
L+TG ++G+G +++ L GLG A ++ RN+ + E L ++ N+ D+
Sbjct: 25 LVTGGSKGIGYAIVEELAGLG----ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLL 80
Query: 64 DFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPLML 123
++D L + ++ V + LN+LVNNAG+ + N A L
Sbjct: 81 S-RTERDKLMQTVAHVFDGK-LNILVNNAGVV-IHKEAKDFTEKDYNIIMGTNFEAAYHL 137
Query: 124 TKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAATR 183
++ PLLK S ++ +SSI G + Y SK A+N T+
Sbjct: 138 SQIAYPLLKA-----------SQNGNVIFLSSIAGFSALPSVS---LYSASKGAINQMTK 183
Query: 184 SLSIDLKGDKIIATAMHPGWVKTDM 208
SL+ + D I ++ PG + T +
Sbjct: 184 SLACEWAKDNIRVNSVAPGVILTPL 208
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 103 bits (259), Expect = 8e-27
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIELDVT 63
L+TG +G+G +++ G G A I RN+ + E L+ ++ + D +
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFG----AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDAS 73
Query: 64 DFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNVTAP 120
+++ L + +S + L++L+NN G R E + H N+ +
Sbjct: 74 LRP-EREKLMQTVSSMF-GGKLDILINNLGA----IRSKPTLDYTAEDFSFHISTNLESA 127
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
L++ PLLK + G I+ +SSI G + + Y +K ALN
Sbjct: 128 YHLSQLAHPLLKAS---------GCGN--IIFMSSIAGVVSASVGS---IYSATKGALNQ 173
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDM 208
R+L+ + D I A A+ P + T +
Sbjct: 174 LARNLACEWASDGIRANAVAPAVIATPL 201
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 102 bits (257), Expect = 1e-26
Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 25/230 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
+ L+TG +RG+G G+++ L LG A ++ RN+ + + L + +
Sbjct: 10 CTALVTGGSRGIGYGIVEELASLG----ASVYTCSRNQKELNDCLTQWRSKGFKVEASVC 65
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
D++ ++ L +++ LN+LVNNAGI + E + +N A
Sbjct: 66 DLSS-RSERQELMNTVANHF-HGKLNILVNNAGIV-IYKEAKDYTVEDYSLIMSINFEAA 122
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
L+ P LK S R +V +SS+ G++ + Y +K A++
Sbjct: 123 YHLSVLAHPFLKA-----------SERGNVVFISSVSGALAVPYEA---VYGATKGAMDQ 168
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQS 230
TR L+ + D I + PG + T + + +
Sbjct: 169 LTRCLAFEWAKDNIRVNGVGPGVIATSL---VEMTIQDPEQKENLNKLID 215
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 102 bits (256), Expect = 3e-26
Identities = 61/209 (29%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +ITG G+GL K V G A +F T R KD A+A+ I+ D
Sbjct: 30 KIAVITGATSGIGLAAAKRFVAEG----ARVFITGRRKDVLDA--AIAEIGGGAVGIQAD 83
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
+ + D L+ + VK + ++VL NAG LG + EQ D F NV
Sbjct: 84 SAN-LAELDRLY----EKVKAEAGRIDVLFVNAGGG-SMLPLGEVTEEQYDDTFDRNVKG 137
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
L + LPLL + +++V S GS F Y SKAAL
Sbjct: 138 VLFTVQKALPLLAR-------------GSSVVLTGSTAGST---GTPAFSVYAASKAALR 181
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ R+ +DLK I + PG +T
Sbjct: 182 SFARNWILDLKDRGIRINTLSPGPTETTG 210
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 103 bits (258), Expect = 3e-26
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 35/220 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRN-----KDKAVELLALAQQHS-NL 55
K ILITG + G G + L G G+ ++A+ R+ + A+ + +L
Sbjct: 6 KIILITGASSGFGRLTAEALAGAGHR----VYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTD 111
+ELDV I ++ + G ++VL++NAG G PEQ +
Sbjct: 62 RTLELDVQSQVSVDRA----IDQIIGEDGRIDVLIHNAGHMV----FGPAEAFTPEQFAE 113
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
+ +NV + + + LP +++ ++ +SS + T PY
Sbjct: 114 LYDINVLSTQRVNRAALPHMRRQ---------KHGL--LIWISSSSSAG--GTPPYLAPY 160
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
+KAA++A + +L I + + PG +
Sbjct: 161 FAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHF 200
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 102 bits (257), Expect = 4e-26
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 37/223 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ----HSNLHV 57
+LITGC+ G+GL + L +Q ++AT R+ L A+ +L
Sbjct: 3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKP------EQMTD 111
++LDV D + V + ++VLV NAG+ GLL P + +
Sbjct: 62 LQLDVRDSKSVAAAR-----ERVTEGRVDVLVCNAGL-------GLLGPLEALGEDAVAS 109
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
VNV + + + LP +K+ GS R ++ S+ G + Y
Sbjct: 110 VLDVNVVGTVRMLQAFLPDMKRR---------GSGR--VLVTGSVGGLM---GLPFNDVY 155
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAP 214
SK AL SL++ L + + + G V T
Sbjct: 156 CASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLG 198
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 101 bits (255), Expect = 4e-26
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVE----LLALAQQHSNLHV 57
K+++ITG + G+G + G A++ T R+ ++ E +L ++
Sbjct: 7 KTVIITGSSNGIGRTTAILFAQEG----ANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL-- 114
+ DVT Q + I+ +K G ++VLVNNAG A G +Q D +
Sbjct: 63 VVADVTTEDGQDQI----INSTLKQFGKIDVLVNNAGAA-IPDAFGTTGTDQGIDIYHKT 117
Query: 115 --VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
+N+ A + +TK + P L S+ IVNVSSI+ + F Y
Sbjct: 118 LKLNLQAVIEMTKKVKPHLVA------------SKGEIVNVSSIVAGPQAQP--DFLYYA 163
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+KAAL+ TRS +IDL I ++ PG V+T
Sbjct: 164 IAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGF 199
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 99.5 bits (249), Expect = 2e-25
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK----AVELLALAQQHSNLHV 57
+ IL+TG RG+G + G A + R + + ++ + Q +
Sbjct: 15 RVILVTGAARGIGAAAARAYAAHG----ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIA 70
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVN 116
+ L+ + +++ + V + G L+ L++NA I T L L E VN
Sbjct: 71 LNLENATAQQYREL----AARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVN 126
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
V A MLT+ +LPLLK+ S A+I SS +G G Y SK
Sbjct: 127 VNATFMLTRALLPLLKR-----------SEDASIAFTSSSVGRKGRANWG---AYGVSKF 172
Query: 177 ALNAATRSLSIDLKGDKII-ATAMHPGWVKTDMGGSNAPLE 216
A ++L+ +L+G + A +++PG +T M P E
Sbjct: 173 ATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPDE 213
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 98.8 bits (247), Expect = 3e-25
Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 34/235 (14%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M + L+TG ++G+G ++++L+ H + NL I+
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNK----NHTVINIDIQQSFSA--------ENLKFIKA 51
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
D+T QQD+ ++ D++K+ + + NAGI + + E + +NV +
Sbjct: 52 DLTK---QQDI--TNVLDIIKNVSFDGIFLNAGIL-IKGSIFDIDIESIKKVLDLNVWSS 105
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ K + LK A+IV S I + Y SK A+
Sbjct: 106 IYFIKGLENNLKV-------------GASIVFNGSDQCFI---AKPNSFAYTLSKGAIAQ 149
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAH 235
T+SL++DL +I + PG V TD+ + + + +
Sbjct: 150 MTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF 204
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 98.0 bits (245), Expect = 4e-25
Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 42/215 (19%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ-HSNLHVIE 59
M I+ITG + GLG + K+ G + T R++ K L + +N+
Sbjct: 1 MSLIVITGASSGLGAELAKLYDAEG----KATYLTGRSESK---LSTVTNCLSNNVGYRA 53
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D+ ++ + LF+ + D + +V++AG F L PEQ+ N+++
Sbjct: 54 RDLAS-HQEVEQLFEQL-----DSIPSTVVHSAGSGY-FGLLQEQDPEQIQTLIENNLSS 106
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR-----C- 173
+ + + ++ K +V + S P C
Sbjct: 107 AINVLRELVKRYKD------------QPVNVVMIMST---------AAQQPKAQESTYCA 145
Query: 174 SKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
K A+ S+ ++LKG + A++PG + T+
Sbjct: 146 VKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEF 180
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 96.4 bits (241), Expect = 2e-24
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLAL--AQQHSNLHVIE 59
+ IL+TG + G+G G A + RN++K ++ + +
Sbjct: 13 RIILVTGASDGIGREAAMTYARYG----ATVILLGRNEEKLRQVASHINEETGRQPQWFI 68
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
LD+ ++ + ++ + L+ +++NAG+ + P+ D VNV
Sbjct: 69 LDL-LTCTSENC--QQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNV 125
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
A MLT+ +LPLL K S ++V SS +G G Y SK A
Sbjct: 126 NATFMLTQALLPLLLK-----------SDAGSLVFTSSSVGRQGRANWG---AYAASKFA 171
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLE 216
+ L+ + ++ ++PG +T M S P E
Sbjct: 172 TEGMMQVLADEY-QQRLRVNCINPGGTRTAMRASAFPTE 209
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 96.9 bits (242), Expect = 3e-24
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 29/212 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH--SNLHVIE 59
K +++TG ++G+G M L +G AH+ T R+K+ ++++ + ++ H I
Sbjct: 29 KKVIVTGASKGIGREMAYHLAKMG----AHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
+ D + + ++ K G L++L+ N L + VN
Sbjct: 85 GTMEDMTFAEQF----VAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSMEVNFL 139
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ ++LT LP+LK+ S +IV VSS+ G + Y SK AL
Sbjct: 140 SYVVLTVAALPMLKQ------------SNGSIVVVSSLAGKVAYPMVA---AYSASKFAL 184
Query: 179 NAATRSLSIDL--KGDKIIATAMHPGWVKTDM 208
+ S+ + + T G + T+
Sbjct: 185 DGFFSSIRKEYSVSRVNVSITLCVLGLIDTET 216
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 95.7 bits (239), Expect = 4e-24
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 33/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
++LITG +RG+G ++L G + R++ + L ALA + + D
Sbjct: 6 GAVLITGASRGIGEATARLLHAKG----YRVGLMARDEKR---LQALAAELEGALPLPGD 58
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPE---QMTDHFLVNV 117
V + ++ + + G L+ LVNNAG+ + L E + D N+
Sbjct: 59 VREEGDWARA----VAAMEEAFGELSALVNNAGVG-VMKPVHELTLEEWRLVLD---TNL 110
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
T + + +P L + IVNV S+ G N G Y SK
Sbjct: 111 TGAFLGIRHAVPALLR-----------RGGGTIVNVGSLAGK---NPFKGGAAYNASKFG 156
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
L + +DL+ + + PG V T G+
Sbjct: 157 LLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN 190
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 95.3 bits (238), Expect = 7e-24
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK----AVELLALAQQHSNLHV 57
+ITG ++G+G + L G + R+K E++ + V
Sbjct: 8 GLAIITGASQGIGAVIAAGLATDG----YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKP-----EQMTD 111
+ LD+TD +K I D+ + G +++LVN A + G L ++ +
Sbjct: 64 LPLDITDCTKADTE----IKDIHQKYGAVDILVNAAAM----FMDGSLSEPVDNFRKIME 115
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
+NV A + KT+ ++K + I NV+S G Y
Sbjct: 116 ---INVIAQYGILKTVTEIMKVQ---------KNGY--IFNVASRAAKYGFADGGI---Y 158
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+K AL SL +L I T + PGWV TDM
Sbjct: 159 GSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM 195
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 95.7 bits (239), Expect = 8e-24
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 29/213 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ L+TG +RG+G + + L+ G A +F R+ + + + + I D
Sbjct: 30 RIALVTGGSRGIGQMIAQGLLEAG----ARVFICARDAEACADTATRLSAYGDCQAIPAD 85
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH-----FLV 115
++ + + + + + L++LVNNAG + L E +
Sbjct: 86 LSSEAGARRL----AQALGELSARLDILVNNAGT----SWGAAL--ESYPVSGWEKVMQL 135
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
NVT+ + +LPLL+++ A+ +R ++N+ S+ G I + + Y SK
Sbjct: 136 NVTSVFSCIQQLLPLLRRS-----ASAENPAR--VINIGSVAG-ISAMGEQAY-AYGPSK 186
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AAL+ +R L+ +L G+ I + PG + M
Sbjct: 187 AALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 95.8 bits (239), Expect = 8e-24
Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 31/215 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ LITG GLG ++ V G A + ++ ++ E N + D
Sbjct: 6 EVALITGGASGLGRALVDRFVAEG----ARVAVLDKSAERLRE--LEVAHGGNAVGVVGD 59
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHF----LVN 116
V Q+ + G ++ L+ NAGI T L L +++ F VN
Sbjct: 60 VRSLQDQKRA----AERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVN 115
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
V + K LP L SR ++V S G GG Y +K
Sbjct: 116 VKGYIHAVKACLPALVS------------SRGSVVFTISNAGFY---PNGGGPLYTATKH 160
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
A+ R ++ +L + + PG + TD+ G
Sbjct: 161 AVVGLVRQMAFEL-APHVRVNGVAPGGMNTDLRGP 194
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 94.1 bits (235), Expect = 2e-23
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 34/210 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
L+TG +G+G +K L G A + A R +L++LA++ + + +D
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASG----AKVVAVTRTNS---DLVSLAKECPGIEPVCVD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLVNVT 118
+ D+ + G +++LVNNA + F + E F VN+
Sbjct: 61 LGDWD--------ATEKALGGIGPVDLLVNNAALVIMQPFLEV---TKEAFDRSFSVNLR 109
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ +++ + + +IVNVSS++ + T Y +K A+
Sbjct: 110 SVFQVSQMVARDMINRG----------VPGSIVNVSSMVAHV---TFPNLITYSSTKGAM 156
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T++++++L KI +++P V TDM
Sbjct: 157 TMLTKAMAMELGPHKIRVNSVNPTVVLTDM 186
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 94.1 bits (235), Expect = 2e-23
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ +L+TG +G+G G ++ L G A + A R + +L +L ++ + + +D
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATG----ARVVAVSRTQA---DLDSLVRECPGIEPVCVD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+ D+ + G +++LVNNA +A + E F VN+ A
Sbjct: 61 LGDWE--------ATERALGSVGPVDLLVNNAAVA-LLQPFLEVTKEAFDRSFEVNLRAV 111
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ +++ + L G+ IVNVSS Y +K AL+
Sbjct: 112 IQVSQIVARGLIARGVP------GA----IVNVSSQCSQR---AVTNHSVYCSTKGALDM 158
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMG 209
T+ ++++L KI A++P V T MG
Sbjct: 159 LTKVMALELGPHKIRVNAVNPTVVMTSMG 187
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 92.6 bits (231), Expect = 3e-23
Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 38/210 (18%)
Query: 4 ILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELDVT 63
+LITG GLG + L G + + R L LA++ + D+
Sbjct: 3 VLITGATGGLGGAFARALKG------HDLLLSGRRAGA---LAELAREVG-ARALPADLA 52
Query: 64 DFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPLM 122
D + ++++ G L++LV+ G A + + + + ++
Sbjct: 53 DEL--------EAKALLEEAGPLDLLVHAVGKAG-RASVREAGRDLVEEMLAAHLLTAAF 103
Query: 123 LTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAAT 182
+ K A V + + GF Y +K AL A
Sbjct: 104 VLKHARF---------------QKGARAVFFGAYPRYV---QVPGFAAYAAAKGALEAYL 145
Query: 183 RSLSIDLKGDKIIATAMHPGWVKTDMGGSN 212
+ +L + + + V T +
Sbjct: 146 EAARKELLREGVHLVLVRLPAVATGLWAPL 175
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 93.4 bits (233), Expect = 3e-23
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 31/208 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++TG G+G+ ++K L + ++A RN + L ALA+ + IE D
Sbjct: 6 KIAVVTGATGGMGIEIVKDLS-----RDHIVYALGRNPEH---LAALAEIE-GVEPIESD 56
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+ + + D +K+ ++ LV+ A +A + T + + H +NV P
Sbjct: 57 IVK---EVLE--EGGVDKLKNLDHVDTLVHAAAVA-RDTTIEAGSVAEWHAHLDLNVIVP 110
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
L++ +LP L+ AS ++ ++S G+ Y SK AL
Sbjct: 111 AELSRQLLPALRAAS------------GCVIYINSGAGNGPHPGNTI---YAASKHALRG 155
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ + + I + + PG T M
Sbjct: 156 LADAFRKEEANNGIRVSTVSPGPTNTPM 183
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 93.3 bits (233), Expect = 4e-23
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+T G+GL + + L G AH+ + R ++ +A L + ++
Sbjct: 15 KVALVTASTDGIGLAIARRLAQDG----AHVVVSSRKQENVDRTVATLQGEGLSVTGTVC 70
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
V ++ + ++ V G +++LV+NA + F + E VNV A
Sbjct: 71 HVGKAEDRERL----VAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKA 126
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+++TK ++P ++K G ++ VSS+ G PY SK AL
Sbjct: 127 TVLMTKAVVPEMEKR---------GGGS--VLIVSSVGAYHPFPNLG---PYNVSKTALL 172
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T++L+++L I + PG +KT+
Sbjct: 173 GLTKNLAVELAPRNIRVNCLAPGLIKTNF 201
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 92.3 bits (230), Expect = 8e-23
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 28/209 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHV--IE 59
K+++ G+GL + LV F + L L + +++
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRN----LKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DVT + L K I D +K +++L+N AGI L Q+ +N T
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLK--TVDILINGAGI---------LDDHQIERTIAINFTG 110
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ T +L K G I N+ S+ G Y SKAA+
Sbjct: 111 LVNTTTAILDFWDKRK--------GGPGGIIANICSVTGFN---AIHQVPVYSASKAAVV 159
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T SL+ + A +++PG +T +
Sbjct: 160 SFTNSLAKLAPITGVTAYSINPGITRTPL 188
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 92.6 bits (231), Expect = 8e-23
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 29/209 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +++TG RG+G G+++ V G A + +++ AL Q+ I D
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNSG----ARVVICDKDESGG---RALEQELPGAVFILCD 62
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
VT + DV K + + L+ +VNNAG R + +N+
Sbjct: 63 VTQ---EDDV--KTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG 117
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
LTK LP L+K S+ ++N+SS++G+I Q PY +K A+
Sbjct: 118 TYTLTKLALPYLRK------------SQGNVINISSLVGAI---GQAQAVPYVATKGAVT 162
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A T++L++D + + PG + T +
Sbjct: 163 AMTKALALDESPYGVRVNCISPGNIWTPL 191
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 92.6 bits (231), Expect = 8e-23
Identities = 43/236 (18%), Positives = 93/236 (39%), Gaps = 25/236 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K ++I+G LG + + G A + R ++ ++ + +
Sbjct: 12 KVVVISGVGPALGTTLARRCAEQG----ADLVLAARTVERLEDVAKQVTDTGRRALSVGT 67
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D+TD ++ + + + +K G ++V++NNA E M D + V
Sbjct: 68 DITDDAQVAHL----VDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFG 123
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
L L + P L+++ G+ +VNV+S++ +Q + Y+ +K+AL
Sbjct: 124 ALRLIQGFTPALEESK--------GA----VVNVNSMVVRH---SQAKYGAYKMAKSALL 168
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAH 235
A +++L+ +L I ++ PG++ S + G + +
Sbjct: 169 AMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS 224
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 93.2 bits (232), Expect = 1e-22
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 21/214 (9%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKD---KAVELLALAQQHSNLHVI 58
++ +TG G+G+G+++ L+ G + +D KA+ L + +
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQG----CKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
+LDV + +V G +++L NNAG+ F + + VN+
Sbjct: 65 QLDVASREGFKMA----ADEVEARFGPVSILCNNAGVNL-FQPIEESSYDDWDWLLGVNL 119
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ T +P + + +A +VN +S+ + + G Y +K A
Sbjct: 120 HGVVNGVTTFVPRMVERVKAGEQKG-----GHVVNTASMAAFLAAGSPG---IYNTTKFA 171
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
+ + SL L +I + + PG VK+ + S
Sbjct: 172 VRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYAS 205
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 92.3 bits (230), Expect = 1e-22
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 33/217 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVEL---LALAQQHSNLHVI 58
+ L+TG + G+G + + LV G + R EL A L
Sbjct: 33 RLALVTGASGGIGAAVARALVQQG----LKVVGCARTVGNIEELAAECKSAGYPGTLIPY 88
Query: 59 ELDVTDFSKQQDV--LFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPE---QMTDHF 113
D+++ ++D+ +F I + G+++ +NNAG+ A+ L M +
Sbjct: 89 RCDLSN---EEDILSMFSAIRS--QHSGVDICINNAGL-ARPDTLLSGSTSGWKDMFN-- 140
Query: 114 LVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRC 173
VNV A + T+ +K+ I+N++S+ G H Y
Sbjct: 141 -VNVLALSICTREAYQSMKER---------NVDDGHIININSMSG-HRVLPLSVTHFYSA 189
Query: 174 SKAALNAATRSLSIDL--KGDKIIATAMHPGWVKTDM 208
+K A+ A T L +L I AT + PG V+T
Sbjct: 190 TKYAVTALTEGLRQELREAQTHIRATCISPGVVETQF 226
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 91.9 bits (229), Expect = 1e-22
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 30/212 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
+ ++TG +RG+G + + L LG A + T R+ +K + +
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSLG----ARVVLTARDVEKLRAVEREIVAAGGEAESHAC 85
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQ---MTDHFLVN 116
D++ + V+ G +VLVNNAG+ L +KP + + VN
Sbjct: 86 DLSHSDAIAAF----ATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA---VN 138
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ AP +L + P + A I+N+SS+ G Y SK
Sbjct: 139 LKAPYLLLRAFAPAMIAA---------KRGH--IINISSLAGKNPVADGA---AYTASKW 184
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
LN S + +L+ ++ + + PG V+T+
Sbjct: 185 GLNGLMTSAAEELRQHQVRVSLVAPGSVRTEF 216
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 91.9 bits (229), Expect = 2e-22
Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 28/212 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ-HSNLHVIEL 60
+ +LITG G+G L + + NK E A + + +H +
Sbjct: 32 EIVLITGAGHGIGRLTAYEFAKLK----SKLVLWDINKHGLEETAAKCKGLGAKVHTFVV 87
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D ++ V + G +++LVNNAG+ + L + Q+ F VNV A
Sbjct: 88 DCSNREDIYSS----AKKVKAEIGDVSILVNNAGVVY-TSDLFATQDPQIEKTFEVNVLA 142
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
TK LP + K ++ IV V+S G + Y SK A
Sbjct: 143 HFWTTKAFLPAMTK-----------NNHGHIVTVASAAGHVSVPFLL---AYCSSKFAAV 188
Query: 180 AATRSLSIDLKG---DKIIATAMHPGWVKTDM 208
++L+ +L + T + P +V T
Sbjct: 189 GFHKTLTDELAALQITGVKTTCLCPNFVNTGF 220
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 91.2 bits (227), Expect = 2e-22
Identities = 27/210 (12%), Positives = 60/210 (28%), Gaps = 38/210 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+IL+ G + LG ++K + + ++ + H +
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKS----WNTISIDFRENPNAD-----------HSFTIK 67
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+ + + V I + ++ V AG + + + +N+ +
Sbjct: 68 DSGEEEIKSV----IEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSA 123
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
LL + V + N G Y +KAA +
Sbjct: 124 FASAHIGAKLLNQ-------------GGLFVLTGASAAL---NRTSGMIAYGATKAATHH 167
Query: 181 ATRSLSIDLKG--DKIIATAMHPGWVKTDM 208
+ L+ + G + + P + T
Sbjct: 168 IIKDLASENGGLPAGSTSLGILPVTLDTPT 197
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 92.0 bits (229), Expect = 2e-22
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 35/216 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ------HSNL 55
K++LITG + G+G + N + R +K L L + ++ +
Sbjct: 34 KTVLITGASAGIGKATALEYLEASNGD-MKLILAARRLEK---LEELKKTIDQEFPNAKV 89
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKD-QGLNVLVNNAGIAAKFTRLGLLKPE---QMTD 111
HV +LD+T K + I ++ ++ + +++LVNNAG A R+G + E + D
Sbjct: 90 HVAQLDITQAEKIKPF----IENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFD 145
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
NVTA + +T+ +LP+ + + IVN+ SI G Y
Sbjct: 146 ---TNVTALINITQAVLPIFQA-----------KNSGDIVNLGSIAGRD---AYPTGSIY 188
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTD 207
SK A+ A T SL +L KI + PG V+T+
Sbjct: 189 CASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE 224
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 91.1 bits (227), Expect = 3e-22
Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 30/211 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
ILITG ++ +GL L+ G + + R + +V L A + D
Sbjct: 28 APILITGASQRVGLHCALRLLEHG----HRVIISYRTEHASVTELRQA----GAVALYGD 79
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+ + I + L +V+NA + + T F V++ AP
Sbjct: 80 FSCETGIMAF----IDLLKTQTSSLRAVVHNASEW--LAETPGEEADNFTRMFSVHMLAP 133
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
++ PLL + A IV++S + Y +KA L +
Sbjct: 134 YLINLHCEPLLTAS-----------EVADIVHISDDVT---RKGSSKHIAYCATKAGLES 179
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
T S + + + P +
Sbjct: 180 LTLSFAARF-APLVKVNGIAPALLMFQPKDD 209
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 90.6 bits (226), Expect = 4e-22
Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K I++T +G+G G A + AT N+ K EL +++ + LD
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREG----AKVIATDINESKLQEL----EKYPGIQTRVLD 58
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
VT K I + L+VL N AG G + + + +NV
Sbjct: 59 VTKK--------KQIDQFANEVERLDVLFNVAGF----VHHGTVLDCEEKDWDFSMNLNV 106
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ ++ K LP + I+N+SS+ S++ Y +KAA
Sbjct: 107 RSMYLMIKAFLPKMLAQK-----------SGNIINMSSVASSVKGVV--NRCVYSTTKAA 153
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+S++ D I + PG V T
Sbjct: 154 VIGLTKSVAADFIQQGIRCNCVCPGTVDTPS 184
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 90.7 bits (226), Expect = 4e-22
Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
+ ++TG + +GL + L G A + ++ A + + L + ++ + +
Sbjct: 14 RVAIVTGGAQNIGLACVTALAEAG----ARVIIADLDEAMATKAVEDLRMEGHDVSSVVM 69
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DVT+ Q+ + V + +G +++LV AGI + + Q +N+
Sbjct: 70 DVTNTESVQNA----VRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNG 125
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + ++ + IV + S+ G I N Y SKA ++
Sbjct: 126 MFRSCQAVGRIMLEQ---------KQGV--IVAIGSMSGLI-VNRPQQQAAYNASKAGVH 173
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFI 228
RSL+ + I A A+ P +++T + + +E I
Sbjct: 174 QYIRSLAAEWAPHGIRANAVAPTYIETTL--TRFGMEKPELYDAWIAGT 220
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 89.9 bits (224), Expect = 9e-22
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 23/229 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K LITG G G GM K G A + R+K A + + D
Sbjct: 10 KVALITGAGSGFGEGMAKRFAKGG----AKVVIVDRDKAGAER--VAGEIGDAALAVAAD 63
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
++ + DV + + +++LVNNAGI K L++PE+ VNV
Sbjct: 64 ISK---EADV--DAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRG 118
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
++T ++P K+ I+NV+S + Y +K +
Sbjct: 119 VYLMTSKLIPHFKENGA-------KGQECVILNVASTGAGR---PRPNLAWYNATKGWVV 168
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFI 228
+ T++L+I+L KI A++P +T + + + I
Sbjct: 169 SVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSI 217
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 90.0 bits (224), Expect = 1e-21
Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 23/208 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++TG G+G + L G G + R D E A + + D
Sbjct: 29 KIAIVTGAGSGVGRAVAVALAGAG----YGVALAGRRLDALQETAAEI--GDDALCVPTD 82
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VTD LF V+ G ++VL NNAG A + L Q N+T P
Sbjct: 83 VTD-PDSVRALFTA---TVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGP 138
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ T+ ++K I+N SI + + PY +K A+
Sbjct: 139 FLCTQEAFRVMKAQ---------EPRGGRIINNGSISATS---PRPYSAPYTATKHAITG 186
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T+S S+D + I + G T M
Sbjct: 187 LTKSTSLDGRVHDIACGQIDIGNADTPM 214
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 89.9 bits (224), Expect = 1e-21
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK----AVELLALAQQHSNLHV 57
++ L+TG G+G G+ LV G A + RN DK EL AL +
Sbjct: 12 RTYLVTGGGSGIGKGVAAGLVAAG----ASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVN 116
D+T+ + + V G L+ +V+ AG + + + E +N
Sbjct: 68 EPTDITNEDETARA----VDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLN 123
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
V + + K + + + V +SSI S T F Y +K+
Sbjct: 124 VNGTMYVLKHAAREMVRGG-----------GGSFVGISSIAASN---THRWFGAYGVTKS 169
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A++ + + +L + ++ PG ++TD+
Sbjct: 170 AVDHLMQLAADELGASWVRVNSIRPGLIRTDL 201
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 89.2 bits (222), Expect = 2e-21
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ---HSNLHVI 58
++ ITG G G + G + T R +++ L ALA + + + +
Sbjct: 22 STLFITGATSGFGEACARRFAEAG----WSLVLTGRREER---LQALAGELSAKTRVLPL 74
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPE---QMTDHFL 114
LDV D + + + ++ ++ L L+NNAG+A + M D
Sbjct: 75 TLDVRD----RAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVD--- 127
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+ L T+ +LP L + A+IVN+ S+ G G H Y +
Sbjct: 128 TNIKGLLYSTRLLLPRLIAH----------GAGASIVNLGSVAGKW---PYPGSHVYGGT 174
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTD 207
KA + + +L DL+G + T + PG +++
Sbjct: 175 KAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESE 207
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 88.0 bits (219), Expect = 3e-21
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 4 ILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHS-NLHVIELDV 62
+L+TG G G + + + G + AT R +++ L L + NL++ +LDV
Sbjct: 3 VLVTGATAGFGECITRRFIQQG----HKVIATGRRQER---LQELKDELGDNLYIAQLDV 55
Query: 63 TDFSKQQDVLFKDISDVVKD-QGLNVLVNNAGIAAKFTRLGLLKPE---QMTDHFLVNVT 118
+ + + + ++ + + +++LVNNAG+A E M D N
Sbjct: 56 RN----RAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMID---TNNK 108
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ +T+ +LP + + + I+N+ S GS G + Y +KA +
Sbjct: 109 GLVYMTRAVLPGMVE-----------RNHGHIINIGSTAGSW---PYAGGNVYGATKAFV 154
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTD 207
+ +L DL G + T + PG V
Sbjct: 155 RQFSLNLRTDLHGTAVRVTDIEPGLVGGT 183
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 87.5 bits (218), Expect = 4e-21
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 25/210 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +ITG G+GL + V G A + T R+ D + + + D
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEG----AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHD 62
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
+D + K G ++ LVNNAGI A + + VN+
Sbjct: 63 SSDEDGWTKL----FDATEKAFGPVSTLVNNAGI-AVNKSVEETTTAEWRKLLAVNLDGV 117
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
T+ + +K G+S I+N+SSI G + Y SK A+
Sbjct: 118 FFGTRLGIQRMKNKGL-------GAS---IINMSSIEGFV---GDPSLGAYNASKGAVRI 164
Query: 181 ATRSLSIDL--KGDKIIATAMHPGWVKTDM 208
++S ++D K + +HPG++KT +
Sbjct: 165 MSKSAALDCALKDYDVRVNTVHPGYIKTPL 194
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 87.4 bits (217), Expect = 5e-21
Identities = 25/209 (11%), Positives = 68/209 (32%), Gaps = 32/209 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ +L+ G LG ++ + + +++ ++++
Sbjct: 8 RRVLVYGGRGALGSRCVQAFRARN----WWVASIDVVENEEASAS---------VIVKMT 54
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPL 121
+ ++Q D + ++ ++ DQ ++ ++ AG A + + ++
Sbjct: 55 DSF-TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST 113
Query: 122 MLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAA 181
+ + LK+ + + + G Y +K A++
Sbjct: 114 ISSHLATKHLKEGG-------------LLTLAGAKAA---LDGTPGMIGYGMAKGAVHQL 157
Query: 182 TRSLSIDLKG--DKIIATAMHPGWVKTDM 208
+SL+ G A A+ P + T M
Sbjct: 158 CQSLAGKNSGMPSGAAAIAVLPVTLDTPM 186
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 87.2 bits (217), Expect = 6e-21
Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 43/215 (20%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ +++TG G+G + + G + ++ ++ + A++ NL D
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAG----DKVCFIDIDEKRSADF---AKERPNLFYFHGD 55
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT----DHFL-V 115
V D + + ++ ++VLVNNA G+L + D+ L V
Sbjct: 56 VADPLTLKKF----VEYAMEKLQRIDVLVNNACR----GSKGIL--SSLLYEEFDYILSV 105
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRC 173
+ AP L++ L K + I+N++S Q Y
Sbjct: 106 GLKAPYELSRLCRDELIKN------------KGRIINIASTRA-----FQSEPDSEAYAS 148
Query: 174 SKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+K + A T +L++ L G ++ + PGW+
Sbjct: 149 AKGGIVALTHALAMSL-GPDVLVNCIAPGWINVTE 182
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 87.2 bits (217), Expect = 7e-21
Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 30/228 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K +ITG G+G + G A + + N D A ++ + Q
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAG----ASVVVSDINADAANHVVDEIQQLGGQAFACRC 67
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL--KPEQMTDHFLVNV 117
D+T + + + G +++LVNNAG + +NV
Sbjct: 68 DITSEQELSAL----ADFAISKLGKVDILVNNAGG----GGPKPFDMPMADFRRAYELNV 119
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ L++ + P ++K G I+ ++S+ ++ Y SKAA
Sbjct: 120 FSFFHLSQLVAPEMEKN---------GGGV--ILTITSMAAENKNINMT---SYASSKAA 165
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
+ R+++ DL I + PG + TD S E+
Sbjct: 166 ASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT 213
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 86.9 bits (216), Expect = 8e-21
Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 36/218 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFA---TCRNKDKAVELLA-LAQQHSNLHV 57
+LITG +G+G + + P + R ++ + +
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDT 62
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQ---MT 110
I D++D + + + + +V+ G ++ LVNNAG+ R G L E
Sbjct: 63 ITADISDMADVRRL----TTHIVERYGHIDCLVNNAGV----GRFGALSDLTEEDFDYTM 114
Query: 111 DHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHP 170
+ N+ LT+ + L+++ S I ++S+ +
Sbjct: 115 N---TNLKGTFFLTQALFALMERQ---------HSGH--IFFITSVAATKAFRHSSI--- 157
Query: 171 YRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
Y SK ++ + + + T + PG V T M
Sbjct: 158 YCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM 195
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 87.7 bits (218), Expect = 1e-20
Identities = 57/245 (23%), Positives = 85/245 (34%), Gaps = 55/245 (22%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
++++ITG N GLG + L G A + R+ K A + V ELD
Sbjct: 17 RTVVITGANSGLGAVTARELARRG----ATVIMAVRDTRKGEA--AARTMAGQVEVRELD 70
Query: 62 VTDFSKQQDVLFKDISDVVKD-QGLNVLVNNAGIAAKFTRLGLLKPEQMTD-----HFLV 115
+ D + G +VL+NNAGI A P +T
Sbjct: 71 LQDL--------SSVRRFADGVSGADVLINNAGIMAV--------PYALTVDGFESQIGT 114
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSI---MGSIE-DNTQGGFHPY 171
N LT +LP L R +V VSS+ G I ++ Y
Sbjct: 115 NHLGHFALTNLLLPRLT-------------DR--VVTVSSMAHWPGRINLEDLNWRSRRY 159
Query: 172 RC------SKAALNAATRSLS--IDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAG 223
SK A T L + G + A A HPG+ T++ G++ A +
Sbjct: 160 SPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSA 219
Query: 224 IIQFI 228
+ +
Sbjct: 220 ATRVV 224
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 86.8 bits (216), Expect = 1e-20
Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 37/221 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K+ L+TG RGLG + L G A + E + L ++ + H +
Sbjct: 10 KTALVTGSARGLGFAYAEGLAAAG----ARVILNDIRATLLAESVDTLTRKGYDAHGVAF 65
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIA--AKFTRLGLLKPEQMTDHFL-VN 116
DVTD + S + + +++L+NNAGI L + + N
Sbjct: 66 DVTDELAIEAA----FSKLDAEGIHVDILINNAGIQYRKPMVEL----ELENWQKVIDTN 117
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRCS 174
+T+ +++++ + + S I+N+ S+ PY +
Sbjct: 118 LTSAFLVSRSAAKRMIARN----------SGGKIINIGSLTSQ-----AARPTVAPYTAA 162
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPL 215
K + T S++ + I A+ PG++ TDM N L
Sbjct: 163 KGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDM---NTAL 200
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 86.4 bits (215), Expect = 1e-20
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 27/227 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLALAQQH-SNLHVIE 59
++I++ G R +G G A++ + A +A ++ + I+
Sbjct: 9 RTIVVAGAGRDIGRACAIRFAQEG----ANVVLTYNGAAEGAATAVAEIEKLGRSALAIK 64
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
D+T+ ++ + IS G ++ LV+ AG + + VN+T
Sbjct: 65 ADLTNAAEVEAA----ISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLT 120
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + KT LP + K AIV SS G D G Y SK A+
Sbjct: 121 SLFLTAKTALPKMAKGG-------------AIVTFSSQAG--RDGGGPGALAYATSKGAV 165
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
TR L+ ++ G KI A+ PG + T + EV AG
Sbjct: 166 MTFTRGLAKEV-GPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGAT 211
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 86.4 bits (215), Expect = 2e-20
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLALAQQH-SNLHVIE 59
K L+TG +RG+G + K L G A + K++A E + Q + + I
Sbjct: 8 KVALVTGASRGIGRAIAKRLANDG----ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 63
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQ----GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLV 115
++ + L+ + + ++++ ++L+NNAGI + + V
Sbjct: 64 ANLESLH-GVEALYSSLDNELQNRTGSTKFDILINNAGIG-PGAFIEETTEQFFDRMVSV 121
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N AP + + L L+ +SR I+N+SS I + F Y +K
Sbjct: 122 NAKAPFFIIQQALSRLRD-----------NSR--IINISSAATRI---SLPDFIAYSMTK 165
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGG 210
A+N T +L+ L I A+ PG+VKTDM
Sbjct: 166 GAINTMTFTLAKQLGARGITVNAILPGFVKTDMNA 200
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 86.9 bits (216), Expect = 2e-20
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+TG + G+G + G A I N++ +A N H
Sbjct: 35 KIALVTGASYGIGFAIASAYAKAG----ATIVFNDINQELVDRGMAAYKAAGINAHGYVC 90
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH-----FL 114
DVTD Q + ++ + + G +++LVNNAGI R + +MT
Sbjct: 91 DVTDEDGIQAM----VAQIESEVGIIDILVNNAGI----IRRVPM--IEMTAAQFRQVID 140
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
+++ AP +++K ++P + K G + I+N+ S+M + T Y +
Sbjct: 141 IDLNAPFIVSKAVIPSMIKK---------GHGK--IINICSMMSELGRETVS---AYAAA 186
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSL 231
K L T++++ + I + PG++ T APL F Q +
Sbjct: 187 KGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQ---TAPLRELQKDGSRHPFDQFI 240
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 86.1 bits (214), Expect = 2e-20
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 19/210 (9%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLALAQQH-SNLHVIE 59
K +LITG ++G+GL ++ G A + + E +A + +
Sbjct: 8 KRVLITGSSQGIGLATARLFARAG----AKVGLHGRKAPANIDETIASMRADGGDAAFFA 63
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
D+ Q + + + V G ++VL+NNAG L + N+
Sbjct: 64 ADLATSEACQQL----VDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIR 119
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ +M TK LP L A++A+ +A+++ SI G G Y +KA L
Sbjct: 120 SVVMTTKFALPHLAAAAKASGQT------SAVISTGSIAGHTGGG--PGAGLYGAAKAFL 171
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ ++ D + + PG V T
Sbjct: 172 HNVHKNWVDFHTKDGVRFNIVSPGTVDTAF 201
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 85.6 bits (213), Expect = 3e-20
Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 26/224 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+++ITG RGLG + V G A + ++ + LD
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAG----ARVVLADVLDEEGAATAR--ELGDAARYQHLD 59
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VT Q V ++ ++ G ++ LVNNAGI+ L E+ +N+T
Sbjct: 60 VTIEEDWQRV----VAYAREEFGSVDGLVNNAGIS-TGMFLETESVERFRKVVEINLTGV 114
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ KT++P +K A G +IVN+SS G + Y SK +
Sbjct: 115 FIGMKTVIPAMKDA---------GG--GSIVNISSAAGLM---GLALTSSYGASKWGVRG 160
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGI 224
++ +++L D+I ++HPG T M +
Sbjct: 161 LSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNT 204
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 86.1 bits (214), Expect = 3e-20
Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 25/230 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K ++TG + G+G + G A + T RN + EL +A +
Sbjct: 9 KIAIVTGASSGIGRAAALLFAREG----AKVVVTARNGNALAELTDEIAGGGGEAAALAG 64
Query: 61 DVTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
DV D + + + ++ + GL+ NNAG + L E + N+T
Sbjct: 65 DVGD---EALH--EALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLT 119
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + K +P + G ++ SS +G G PY SKA L
Sbjct: 120 SAFLAAKYQVPAIAAL---------GG--GSLTFTSSFVGHT--AGFAGVAPYAASKAGL 166
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFI 228
++L+++L I A+ PG T +N P +
Sbjct: 167 IGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH 216
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 84.6 bits (210), Expect = 3e-20
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 48/209 (22%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
IL+ G + LG + + L + A + R+ + +
Sbjct: 3 AMKILLIGASGTLGSAVKERL-----EKKAEVITAGRHSGD----------------VTV 41
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D+T+ I + + G ++ +V+ G A F+ L L PE+ +
Sbjct: 42 DITNID--------SIKKMYEQVGKVDAIVSATGSA-TFSPLTELTPEKNAVTISSKLGG 92
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ L + L + + + IM ++ + A+
Sbjct: 93 QINLVLLGIDSLND-------------KGSFTLTTGIMM---EDPIVQGASAAMANGAVT 136
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A +S +I++ I + P ++
Sbjct: 137 AFAKSAAIEM-PRGIRINTVSPNVLEESW 164
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 85.7 bits (213), Expect = 3e-20
Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 35/235 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +++TG + G+G + + V G + + + + IE D
Sbjct: 9 KVVIVTGASMGIGRAIAERFVDEG----SKVIDLSIHDPGEAKYDH----------IECD 54
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VT+ + + I + K+ G ++VLVNNAGI + ++ + + VN+
Sbjct: 55 VTNPDQVKAS----IDHIFKEYGSISVLVNNAGI-ESYGKIESMSMGEWRRIIDVNLFGY 109
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+K +P + ++ +IVN+SS+ SI Y SK A+
Sbjct: 110 YYASKFAIPYMIRS---------RD--PSIVNISSVQASI---ITKNASAYVTSKHAVIG 155
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAH 235
T+S+++D + A+ P + T + A LEVG+ I + I G H
Sbjct: 156 LTKSIALDY-APLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH 209
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 85.8 bits (213), Expect = 4e-20
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 23/210 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLAL--AQQHSNLHVIE 59
+ L+TG G+G G+ + L G + T R D + + + +
Sbjct: 34 RIALVTGGGTGVGRGIAQALSAEG----YSVVITGRRPDVLDAAAGEIGGRTGNIVRAVV 89
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
DV D Q LF V + L++LVNNAG L + EQ N+T
Sbjct: 90 CDVGD-PDQVAALFAA---VRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLT 145
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ T+ ++K I+N SI PY +K A+
Sbjct: 146 GAFLCTQHAFRMMKAQ---------TPRGGRIINNGSISAQTPRPNSA---PYTATKHAI 193
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T+S ++D + I + G TDM
Sbjct: 194 TGLTKSTALDGRMHDIACGQIDIGNAATDM 223
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 84.7 bits (210), Expect = 4e-20
Identities = 25/209 (11%), Positives = 63/209 (30%), Gaps = 32/209 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+++ G LG +++ G + + + Q + +++ +
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNG----YTVLNIDLSAN---------DQADSNILVDGN 50
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPL 121
++Q+ + + + ++ ++ + AG A + + +V +
Sbjct: 51 KNW-TEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA 109
Query: 122 MLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAA 181
+ K LK + + Y +KAA++
Sbjct: 110 IAAKLATTHLKPG-------------GLLQLTGAAAA---MGPTPSMIGYGMAKAAVHHL 153
Query: 182 TRSLSIDLKG--DKIIATAMHPGWVKTDM 208
T SL+ G D + P + T M
Sbjct: 154 TSSLAAKDSGLPDNSAVLTIMPVTLDTPM 182
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 85.3 bits (212), Expect = 5e-20
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 30/225 (13%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIELDVT 63
++TG G+G + G A + T + A + A + Q +E +VT
Sbjct: 16 IVTGAAAGIGRAIAGTFAKAG----ASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVT 71
Query: 64 DFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL--KPEQMTDHFLVNVTAP 120
D ++ V I + G + VLVNNAG F +N+ +
Sbjct: 72 DEQHREAV----IKAALDQFGKITVLVNNAGG----GGPKPFDMPMSDFEWAFKLNLFSL 123
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
L++ P ++KA G I+N+SS+ G + Y SKAA+N
Sbjct: 124 FRLSQLAAPHMQKA---------GGGA--ILNISSMAGENTNVRMA---SYGSSKAAVNH 169
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
TR+++ D+ I A+ PG +KTD + E+ A
Sbjct: 170 LTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHT 214
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 85.3 bits (212), Expect = 5e-20
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 31/213 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
K LITG +G+G + + G A + + R+ + Q +++H +
Sbjct: 21 KRALITGATKGIGADIARAFAAAG----ARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+D+ + ++ + G L+VLVNNAGI + + P+ V
Sbjct: 77 IDLAEPDAPAEL----ARRAAEAFGGLDVLVNNAGI----SHPQPVVDTDPQLFDATIAV 128
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N+ AP +L + + A E G+ I+ V+S + Y SK
Sbjct: 129 NLRAPALLASAVGKAMVAAGEG------GA----IITVASAAALA---PLPDHYAYCTSK 175
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A L AT+ L+ +L I A ++ P V T+M
Sbjct: 176 AGLVMATKVLARELGPHGIRANSVCPTVVLTEM 208
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 85.9 bits (213), Expect = 6e-20
Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 24/209 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
++ ++TG G+GL G A + + ++ + + L Q + H +
Sbjct: 32 RAAVVTGGASGIGLATATEFARRG----ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVC 87
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DV + + + + G ++V+ +NAGI L + + +++
Sbjct: 88 DVRHLDEMVRL----ADEAFRLLGGVDVVFSNAGIVV-AGPLAQMNHDDWRWVIDIDLWG 142
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + LP L + I +S G + G Y +K +
Sbjct: 143 SIHAVEAFLPRLLEQGTG----------GHIAFTASFAGLV---PNAGLGTYGVAKYGVV 189
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+L+ ++K + I + + P V+T +
Sbjct: 190 GLAETLAREVKPNGIGVSVLCPMVVETKL 218
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 84.9 bits (211), Expect = 6e-20
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
+S+++TG +G+G G+ V G A++ R+ +A + ++
Sbjct: 11 RSVVVTGGTKGIGRGIATVFARAG----ANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV+D ++ + V++ G ++V+ NAG+ L PEQ+ F V
Sbjct: 67 TDVSDRAQCDAL----AGRAVEEFGGIDVVCANAGV----FPDAPLATMTPEQLNGIFAV 118
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
NV + L L + GS R +V SSI G I G+ Y +K
Sbjct: 119 NVNGTFYAVQACLDALIAS---------GSGR--VVLTSSITGPITGYP--GWSHYGATK 165
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AA R+ +I+L KI A+ PG + T+
Sbjct: 166 AAQLGFMRTAAIELAPHKITVNAIMPGNIMTEG 198
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 84.5 bits (210), Expect = 8e-20
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 34/235 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++TG + G+GL ++ LV G A + + ++ V + ++D
Sbjct: 15 KVAIVTGGSSGIGLAVVDALVRYG----AKVVSVSLDEKSDVNVSDH---------FKID 61
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VT+ + ++ + K G +++LVNNAGI +++ L L E VNV
Sbjct: 62 VTNEEEVKEA----VEKTTKKYGRIDILVNNAGI-EQYSPLHLTPTEIWRRIIDVNVNGS 116
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
++ K +P++ +I+N++S+ Y SK AL
Sbjct: 117 YLMAKYTIPVMLAI-----------GHGSIINIASVQSYA---ATKNAAAYVTSKHALLG 162
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEAH 235
TRS++ID KI A+ PG + T M A +EVG + + I+ G H
Sbjct: 163 LTRSVAIDY-APKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH 216
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 84.1 bits (209), Expect = 1e-19
Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 28/227 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATC-RNKDKAVELLA-LAQQHSNLHVIE 59
K ++TG +RG+G + L G + A E+ + +
Sbjct: 28 KVAIVTGASRGIGAAIAARLASDG----FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQ 83
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
DV+D + LF + G ++VLVNNAGI T + VN+
Sbjct: 84 ADVSDPA-AVRRLFAT---AEEAFGGVDVLVNNAGIM-PLTTIAETGDAVFDRVIAVNLK 138
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ L+ G I+N+S+ + + G Y +KA +
Sbjct: 139 GTFNTLREAAQRLRVG---------GR----IINMSTSQVGLLHPSYG---IYAAAKAGV 182
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
A T LS +L+G I A+ PG TD+ EV A +
Sbjct: 183 EAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLA 229
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 84.1 bits (209), Expect = 1e-19
Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 37/213 (17%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKA---VELLALAQQHSNLHVIELD 61
++TG + G+GL +++L+ G A + R+ ++ L + L D
Sbjct: 12 VVTGGSSGIGLATVELLLEAG----AAVAFCARDGERLRAAESALRQRFPGARLFASVCD 67
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
V D + + + G ++LVNNAG R+ E ++ +
Sbjct: 68 VLDALQVRAF----AEACERTLGCASILVNNAGQ----GRVSTFAETTDEAWSEELQLKF 119
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRCSK 175
+ + + LP L+ + AAIV V+S++ +Q H ++
Sbjct: 120 FSVIHPVRAFLPQLESRA-----------DAAIVCVNSLLA-----SQPEPHMVATSAAR 163
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + RS++ + + + G V++
Sbjct: 164 AGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQ 196
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 84.1 bits (209), Expect = 1e-19
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 36/219 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
++ ++TG G+G + G AH+ A R +A + + D
Sbjct: 32 RTAVVTGAGSGIGRAIAHGYARAG----AHVLAWGRTDGVKEVADEIADGGGSAEAVVAD 87
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLK--PEQMTDHFL-VNVT 118
+ D +V ++ + ++VLVNNAGI + L VN+
Sbjct: 88 LADLEGAANV----AEELAATRRVDVLVNNAGI----IARAPAEEVSLGRWREVLTVNLD 139
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRCSKA 176
A +L+++ + GS R IV ++S++ QGG + Y SK
Sbjct: 140 AAWVLSRSFGTAMLAH---------GSGR--IVTIASMLS-----FQGGRNVAAYAASKH 183
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPL 215
A+ TR+L+ + G + A+ PG+V T A L
Sbjct: 184 AVVGLTRALASEWAGRGVGVNALAPGYVVTAN---TAAL 219
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 83.4 bits (207), Expect = 2e-19
Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 28/209 (13%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M + ++T G+G L G + + + EL A A+ +L
Sbjct: 1 MSTAIVTNVKHFGGMGSALRLSEAG----HTVACHDESFKQKDELEAFAE-----TYPQL 51
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
+ ++ I V G ++VLV+N A +F + E
Sbjct: 52 KPMSEQEPAEL----IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIR 107
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
P L + +KK S I+ ++S Y ++A
Sbjct: 108 PFALVNAVASQMKKR---------KSGH--IIFITSATPFGPWKELS---TYTSARAGAC 153
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+LS +L I A+ P ++ ++
Sbjct: 154 TLANALSKELGEYNIPVFAIGPNYLHSED 182
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 83.3 bits (207), Expect = 2e-19
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 31/235 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K L+TG G+GL ++K+L+G G A + + N+ +L A + + D
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEG----AKVAFSDINEAAGQQLAA--ELGERSMFVRHD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
V+ + D + V+ + LNVLVNNAGI + + E + +N +
Sbjct: 61 VSS---EADW--TLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTES 114
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + + +K+ GS I+N++S+ + + Y SKAA++
Sbjct: 115 VFIGCQQGIAAMKETG--------GS----IINMASVSSWL---PIEQYAGYSASKAAVS 159
Query: 180 AATRSLSIDL--KGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLG 232
A TR+ ++ +G I ++HP + T M ++ P V + G
Sbjct: 160 ALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAG 214
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 83.3 bits (207), Expect = 2e-19
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 29/210 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
KS LITG RG+G + V G A + + ++A + A A+ + +++D
Sbjct: 9 KSALITGSARGIGRAFAEAYVREG----ATVAIADIDIERARQ--AAAEIGPAAYAVQMD 62
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
VT I+ V+ G L++LVNNA + + + E F +NV
Sbjct: 63 VTRQDSIDAA----IAATVEHAGGLDILVNNAALF-DLAPIVEITRESYEKLFAINVAGT 117
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQG--GFHPYRCSKAAL 178
L + + G I+N++S G +G Y +KAA+
Sbjct: 118 LFTLQAAARQMIAQGRG------GK----IINMASQAG-----RRGEALVAIYCATKAAV 162
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+S +DL +I A+ PG V +
Sbjct: 163 ISLTQSAGLDLIKHRINVNAIAPGVVDGEH 192
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 83.3 bits (207), Expect = 2e-19
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K L++G RG+G ++ +V G A + ++ + A + + LD
Sbjct: 8 KVALVSGGARGMGASHVRAMVAEG----AKVVFGDILDEEGKAMAA--ELADAARYVHLD 61
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
VT K D GL+VLVNNAGI + + VN+T
Sbjct: 62 VTQ---PAQW--KAAVDTAVTAFGGLHVLVNNAGIL-NIGTIEDYALTEWQRILDVNLTG 115
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + ++ +K+A R +I+N+SSI G H Y +K A+
Sbjct: 116 VFLGIRAVVKPMKEAG-----------RGSIINISSIEGLA---GTVACHGYTATKFAVR 161
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T+S +++L I ++HPG VKT M
Sbjct: 162 GLTKSTALELGPSGIRVNSIHPGLVKTPM 190
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 83.0 bits (206), Expect = 3e-19
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 32/215 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K LITG + G+G + L G A + R +K L L + +HV+EL
Sbjct: 8 KVALITGASSGIGEATARALAAEG----AAVAIAARRVEKLRALGDELTAAGAKVHVLEL 63
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPE---QMTDHFLVN 116
DV D ++ V+ G L++LVNNAGI + +M D N
Sbjct: 64 DVADRQGVDAA----VASTVEALGGLDILVNNAGIML-LGPVEDADTTDWTRMID---TN 115
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ + +T+ LP L + S+ +V +SSI G + Y+ +K
Sbjct: 116 LLGLMYMTRAALPHLLR------------SKGTVVQMSSIAGRV---NVRNAAVYQATKF 160
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
+NA + +L ++ + + PG T++ G
Sbjct: 161 GVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGH 195
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 83.1 bits (206), Expect = 3e-19
Identities = 56/254 (22%), Positives = 93/254 (36%), Gaps = 39/254 (15%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH-SNLHVIELDVT 63
++TG +RG+G G+ L G A ++ T R+ D + AQ + D +
Sbjct: 9 VVTGASRGIGRGIALQLCKAG----ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSS 64
Query: 64 DFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAK---FTRLGLL--KPEQMTDHFL-V 115
S + LF+ + ++Q L+VLVNNA + TR P M D V
Sbjct: 65 QES-EVRSLFEQV---DREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRC 173
+ + L+ A G IV +SS PY
Sbjct: 121 GLRGHYFCSVYGARLMVPA---------GQGL--IVVISSPGS------LQYMFNVPYGV 163
Query: 174 SKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGE 233
KAA + + +L+ + ++ PG V+T++ + E + QF +
Sbjct: 164 GKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSS 223
Query: 234 AHNGGFFEYTGKAI 247
A E +GK +
Sbjct: 224 AETT---ELSGKCV 234
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 82.7 bits (205), Expect = 4e-19
Identities = 33/226 (14%), Positives = 64/226 (28%), Gaps = 27/226 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
++ + G +G + K G +FA RN +K L+A + + L
Sbjct: 8 ATVAVIGAGDYIGAEIAKKFAAEG----FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSL 63
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
D + + +V + L V + N G + + + A
Sbjct: 64 DARN---EDEV--TAFLNAADAHAPLEVTIFNVGAN-VNFPILETTDRVFRKVWEMACWA 117
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + L+ + I + GF + +K L
Sbjct: 118 GFVSGRESARLMLAHG-----------QGKIFFTGATASLR---GGSGFAAFASAKFGLR 163
Query: 180 AATRSLSIDLKGDKI-IATAMHPGWVKTDMGGSNAPLEVGAATAGI 224
A +S++ +L I +A + V T G
Sbjct: 164 AVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALAN 209
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 82.6 bits (205), Expect = 4e-19
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 24/209 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+TG +GL L G I N++ + A + ++
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEEG----TAIALLDMNREALEKAEASVREKGVEARSYVC 63
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DVT + VV+D G ++ L NNAG F + + +NVT
Sbjct: 64 DVTSEEAVIGT----VDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTG 119
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ K + + R IVN +S+ G Y SK A+
Sbjct: 120 AFHVLKAVSRQMITQ---------NYGR--IVNTASMAGVKGPPNMA---AYGTSKGAII 165
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A T + ++DL I A+ PG++
Sbjct: 166 ALTETAALDLAPYNIRVNAISPGYMGPGF 194
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 82.2 bits (204), Expect = 5e-19
Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 22/207 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+TG G+GL + + G A + R I D
Sbjct: 12 ACAAVTGAGSGIGLEICRAFAASG----ARLILIDREAAALDRAAQELGAA-VAARIVAD 66
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPL 121
VTD ++ +++LVN+AGIA + VNV
Sbjct: 67 VTDAEAMTAA----AAEAEAVAPVSILVNSAGIA-RLHDALETDDATWRQVMAVNVDGMF 121
Query: 122 MLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAA 181
++ + G+ IVN+ S+ G+I N Y SK A++
Sbjct: 122 WASRAFGRAMVAR---------GAGA--IVNLGSMSGTI-VNRPQFASSYMASKGAVHQL 169
Query: 182 TRSLSIDLKGDKIIATAMHPGWVKTDM 208
TR+L+ + G + A+ PG+V T+M
Sbjct: 170 TRALAAEWAGRGVRVNALAPGYVATEM 196
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 82.6 bits (205), Expect = 5e-19
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 22/209 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
LITG G+G L G + A R + + E+ + +E
Sbjct: 29 PVALITGAGSGIGRATALALAADG----VTVGALGRTRTEVEEVADEIVGAGGQAIALEA 84
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DV+D + ++ + D+V G L+++V NAGI + + LKP + + VN+
Sbjct: 85 DVSDELQMRNA----VRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRG 140
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ +P LK+ G IV VSSI G T G Y +KAA
Sbjct: 141 TFLTLHLTVPYLKQR---------GGGA--IVVVSSING-TRTFTTPGATAYTATKAAQV 188
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + L+++L I A+ PG ++T++
Sbjct: 189 AIVQQLALELGKHHIRVNAVCPGAIETNI 217
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 82.2 bits (204), Expect = 6e-19
Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K +++TG G+G + K + + A +D+ +++ L + ++
Sbjct: 8 KVVIVTGAGSGIGRAIAKKFALND----SIVVAVELLEDRLNQIVQELRGMGKEVLGVKA 63
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DV+ ++ + + ++VL NNAGI T + + E VN+ +
Sbjct: 64 DVSKKKDVEEF----VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYS 119
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
++ ++P++ K G IVN +SI G PY +K L
Sbjct: 120 AFYSSRAVIPIMLKQ---------GK--GVIVNTASIAGIR---GGFAGAPYTVAKHGLI 165
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFI 228
TRS++ I A A+ PG VKT++G ++
Sbjct: 166 GLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS 214
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 82.2 bits (204), Expect = 6e-19
Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 40/211 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K L+TG G+G ++ L G A + R L L D
Sbjct: 29 KVALVTGAAGGIGGAVVTALRAAG----ARVAVADRAVAGIAADLHLP----------GD 74
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
+ + + + V G L+++VNNAG+ G + + VNV
Sbjct: 75 LREAAYADGL----PGAVAAGLGRLDIVVNNAGV----ISRGRITETTDADWSLSLGVNV 126
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
AP + + +PL+ A AIVNV+S G Y +KAA
Sbjct: 127 EAPFRICRAAIPLMAAAG-----------GGAIVNVASCWGLRPGPGHA---LYCLTKAA 172
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L + T+ + +D I A+ P V T M
Sbjct: 173 LASLTQCMGMDHAPQGIRINAVCPNEVNTPM 203
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 81.8 bits (203), Expect = 7e-19
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 32/214 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT--CRNKDKAVELLALAQQH-SNLHVI 58
K ++TG +G+G G+ + L G I + +++A E + L + +
Sbjct: 3 KVAMVTGGAQGIGRGISEKLAADG----FDIAVADLPQQEEQAAETIKLIEAADQKAVFV 58
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFL 114
LDVTD + I + + G +VLVNNAGI ++ L E + +
Sbjct: 59 GLDVTDKANFDSA----IDEAAEKLGGFDVLVNNAGI----AQIKPLLEVTEEDLKQIYS 110
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
VNV + + + G I+N +SI Y +
Sbjct: 111 VNVFSVFFGIQAASRKFDELGVK------GK----IINAASIAAIQGFPILS---AYSTT 157
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
K A+ T++ + +L A PG V T M
Sbjct: 158 KFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM 191
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 81.8 bits (203), Expect = 9e-19
Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 28/212 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K LITG + G+G + G A + R+ D + +A I
Sbjct: 33 KRALITGASTGIGKKVALAYAEAG----AQVAVAARHSDALQVVADEIAGVGGKALPIRC 88
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
DVT + + + + + + G +++ V NAGI + + E+ N
Sbjct: 89 DVTQPDQVRGM----LDQMTGELGGIDIAVCNAGI----VSVQAMLDMPLEEFQRIQDTN 140
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
VT + + + + I+ +S+ G I N Y SKA
Sbjct: 141 VTGVFLTAQAAARAMVDQGLGGT----------IITTASMSGHI-INIPQQVSHYCTSKA 189
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A+ T++++++L +I ++ PG+++T++
Sbjct: 190 AVVHLTKAMAVELAPHQIRVNSVSPGYIRTEL 221
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 81.5 bits (202), Expect = 1e-18
Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 36/211 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++ITG ++G+G G+++ + AT R+ + + + D
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRN----YRVVATSRSIKPSADPDIHT--------VAGD 76
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
++ + + + ++ G ++ LVNNAG+ E + VNV
Sbjct: 77 ISKPETADRI----VREGIERFGRIDSLVNNAGV----FLAKPFVEMTQEDYDHNLGVNV 128
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+T+ + K GS IV++++ + +K
Sbjct: 129 AGFFHITQRAAAEMLKQ---------GSGH--IVSITTSLVDQPMVGMPSAL-ASLTKGG 176
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
LNA TRSL+++ + A+ PG +KT M
Sbjct: 177 LNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM 207
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 81.0 bits (201), Expect = 1e-18
Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 39/228 (17%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQ-----HSNL 55
MK +ITG +RG+G + + L G + R+ D+ L +A + +
Sbjct: 2 MKVAVITGASRGIGEAIARALARDG----YALALGARSVDR---LEKIAHELMQEQGVEV 54
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPE---QMTDH 112
LDV+ + K + + + ++V+V NAG+ F RL L E +M +
Sbjct: 55 FYHHLDVSKAE-SVEEFSKKVLE--RFGDVDVVVANAGL-GYFKRLEELSEEEFHEMIE- 109
Query: 113 FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
VN+ K L LK+ + A+V S + Y
Sbjct: 110 --VNLLGVWRTLKAFLDSLKR-----------TGGLALVTTSDVSA----RLIPYGGGYV 152
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAA 220
+K A A R+ I+ + + PG V T GGS
Sbjct: 153 STKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFGGSKPGKPKEKG 198
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 81.9 bits (203), Expect = 1e-18
Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 27/225 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLALAQQH-SNLHVIE 59
K L TG RG+G G+ L G A + + A E++A ++ + I+
Sbjct: 22 KVALTTGAGRGIGRGIAIELGRRG----ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQ 77
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
D++ S + LF V G L+ +++N+G+ + + E F +N
Sbjct: 78 ADISKPS-EVVALFDK---AVSHFGGLDFVMSNSGME-VWCDELEVTQELFDKVFNLNTR 132
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + L ++ G I+ SSI + Y SKAA+
Sbjct: 133 GQFFVAQQGLKHCRRG---------GR----IILTSSIAAVMTGI--PNHALYAGSKAAV 177
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAG 223
R+ ++D + + PG VKTDM N+ G
Sbjct: 178 EGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKG 222
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 81.8 bits (203), Expect = 1e-18
Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 40/223 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
+ L+TG +RGLG G+ + L G + RN ++A E +
Sbjct: 22 RVALVTGGSRGLGFGIAQGLAEAG----CSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV+++ + + + + V + G L+ +VN AGI R ++ V
Sbjct: 78 CDVSNYEEVKKL----LEAVKEKFGKLDTVVNAAGI----NRRHPAEEFPLDEFRQVIEV 129
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH---PYR 172
N+ + + LL+++ + I+N+ S+ + Y
Sbjct: 130 NLFGTYYVCREAFSLLRES---------DNPS--IINIGSLTVE-----EVTMPNISAYA 173
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPL 215
SK + + T++L+ + I + PGW +T M +
Sbjct: 174 ASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM---TEAV 213
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 81.5 bits (202), Expect = 1e-18
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
K+I++TG NRG+GL + + G A++ R+ AVE+ + +
Sbjct: 15 KTIIVTGGNRGIGLAFTRAVAAAG----ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 70
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV++ I + D G ++ L+ NAG+ + + E + V
Sbjct: 71 CDVSNTDIVTKT----IQQIDADLGPISGLIANAGV----SVVKPATELTHEDFAFVYDV 122
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHP---- 170
NV + + L+K + GS IV SS+ I + +
Sbjct: 123 NVFGVFNTCRAVAKLWLQKQQK-------GS----IVVTSSMSSQIINQSSLNGSLTQVF 171
Query: 171 YRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
Y SKAA + + L+ + I A+ PG+V TD
Sbjct: 172 YNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQ 209
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 81.8 bits (203), Expect = 1e-18
Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 24/210 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH-SNLHVIEL 60
K +TG + G+G + + G A + + + L + + + +
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQAG----ADVAIWYNSHPADEKAEHLQKTYGVHSKAYKC 90
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL-VNVT 118
+++D ++ IS KD G ++V V NAG+ + + + V++
Sbjct: 91 NISDPKSVEET----ISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLN 146
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + + KK G ++ SSI G I N PY +KAA
Sbjct: 147 GVYYCSHNIGKIFKKN---------GKGS--LIITSSISGKIV-NIPQLQAPYNTAKAAC 194
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+SL+I+ + PG++ TD+
Sbjct: 195 THLAKSLAIEW-APFARVNTISPGYIDTDI 223
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 81.0 bits (201), Expect = 1e-18
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 24/209 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+TG +G+G + LV G + N A + + + Q + +++
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDG----FAVAIADYNDATAKAVASEINQAGGHAVAVKV 58
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DV+D + + K G +V+VNNAG+A T + + PE + + +NV
Sbjct: 59 DVSDRDQVFAA----VEQARKTLGGFDVIVNNAGVA-PSTPIESITPEIVDKVYNINVKG 113
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + + KK G I+N S G + + Y SK A+
Sbjct: 114 VIWGIQAAVEAFKKEGHG------GK----IINACSQAGHVGNPELA---VYSSSKFAVR 160
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T++ + DL I PG VKT M
Sbjct: 161 GLTQTAARDLAPLGITVNGYCPGIVKTPM 189
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 80.6 bits (200), Expect = 2e-18
Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 34/213 (15%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M L+T G ++ L G + + A E E
Sbjct: 1 MVIALVTHARHFAGPAAVEALTQDG----YTVVCHDASFADAAERQRFE--------SEN 48
Query: 61 DVTDFSKQQDV--LFKDISDVVKDQG-LNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLV 115
T +Q L ++ ++ +V+N I L + F
Sbjct: 49 PGTIALAEQKPERLVDA---TLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEA 105
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
P++L ++ + L+ A G + ++ ++S +G Y ++
Sbjct: 106 LSIFPILLLQSAIAPLRAA---------GGAS--VIFITSSVGKKPLAYNP---LYGPAR 151
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AA A S + L D I+ A+ P +
Sbjct: 152 AATVALVESAAKTLSRDGILLYAIGPNFFNNPT 184
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 80.7 bits (200), Expect = 2e-18
Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 35/214 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++ITG + G+G + + G + R ++ L AL N ++D
Sbjct: 17 KLVVITGASSGIGEAIARRFSEEG----HPLLLLARRVER---LKALNLP--NTLCAQVD 67
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPE---QMTDHFLVNV 117
VTD + I+ K G + +VNNAG+ ++ + +M D VNV
Sbjct: 68 VTD----KYTFDTAITRAEKIYGPADAIVNNAGMM-LLGQIDTQEANEWQRMFD---VNV 119
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
L + +L +K + I+N+SSI G T Y +K A
Sbjct: 120 LGLLNGMQAVLAPMKA-----------RNCGTIINISSIAGKK---TFPDHAAYCGTKFA 165
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
++A + ++ ++ + + P VKT++
Sbjct: 166 VHAISENVREEVAASNVRVMTIAPSAVKTELLSH 199
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 80.6 bits (200), Expect = 2e-18
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLA-LAQQHSNLHVIE 59
K L+TG +RG+G L G +I R+K A+E + + + V++
Sbjct: 5 KCALVTGSSRGVGKAAAIRLAENG----YNIVINYARSKKAALETAEEIEKLGVKVLVVK 60
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+V +K +++ + + G L+V VNNA L + + +
Sbjct: 61 ANVGQPAKIKEM----FQQIDETFGRLDVFVNNAAS----GVLRPVMELEETHWDWTMNI 112
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N A L + L++K G IV++SS+ SK
Sbjct: 113 NAKALLFCAQEAAKLMEKN---------GGGH--IVSISSLGSIRYLENYT---TVGVSK 158
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AAL A TR L+++L +II A+ G + TD
Sbjct: 159 AALEALTRYLAVELSPKQIIVNAVSGGAIDTDA 191
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 80.3 bits (199), Expect = 3e-18
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 30/212 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
K +ITG + G+GL + + G AHI R D+ E + + +
Sbjct: 8 KVAVITGSSSGIGLAIAEGFAKEG----AHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGI--AAKFTRLGLLKPEQMTDHFLVN 116
+DV V + V G ++LVNNAG E+ ++ +
Sbjct: 64 VDVATPEGVDAV----VESVRSSFGGADILVNNAGTGSNETIMEA---ADEKWQFYWELL 116
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
V A + L + ++P ++ G I++ +SI Y +KA
Sbjct: 117 VMAAVRLARGLVPGMRAR---------GGGA--IIHNASICAV---QPLWYEPIYNVTKA 162
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AL +++L+ ++ D I ++PG + T
Sbjct: 163 ALMMFSKTLATEVIKDNIRVNCINPGLILTPD 194
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 80.3 bits (199), Expect = 4e-18
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 25/212 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLALAQQH-SNLHVIE 59
++TG RG+GLG+ + L G I + + ++A + + +
Sbjct: 30 PVAIVTGGRRGIGLGIARALAASG----FDIAITGIGDAEGVAPVIAELSGLGARVIFLR 85
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL--KPEQMTDHFLVN 116
D+ D S Q + VV + G ++ LVNNAGIA R L KPE VN
Sbjct: 86 ADLADLSSHQAT----VDAVVAEFGRIDCLVNNAGIA-SIVRDDFLDLKPENFDTIVGVN 140
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ + T+ +L + + S S I+N++S+ + + Y SKA
Sbjct: 141 LRGTVFFTQAVLKAMLASDARAS----RS----IINITSVSAVMTSPERL---DYCMSKA 189
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L A ++ L++ L I + PG +++DM
Sbjct: 190 GLAAFSQGLALRLAETGIAVFEVRPGIIRSDM 221
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 79.5 bits (197), Expect = 4e-18
Identities = 50/229 (21%), Positives = 84/229 (36%), Gaps = 31/229 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K ++TG G+G + L G A + N + A + + + +
Sbjct: 10 KVGIVTGSGGGIGQAYAEALAREG----AAVVVADINAEAAEAVAKQIVADGGTAISVAV 65
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
DV+D + + + + G ++ LVNNA I +L L PE VN
Sbjct: 66 DVSDPESAKAM----ADRTLAEFGGIDYLVNNAAIFG-GMKLDFLLTIDPEYYKKFMSVN 120
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ L T+ + + K G IVN SS + + Y +K
Sbjct: 121 LDGALWCTRAVYKKMTKR---------GGGA--IVNQSSTAAWL------YSNYYGLAKV 163
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
+N T+ LS +L G I A+ PG + T+ + P E+ +
Sbjct: 164 GINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGL 212
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 79.5 bits (197), Expect = 5e-18
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 35/211 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRN---KDKAVELLALAQQHSNLHVI 58
K +L+TG RG+G + + G A + K+ A +
Sbjct: 7 KGVLVTGGARGIGRAIAQAFAREG----ALVALCDLRPEGKEVAEAIGGAF--------F 54
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
++D+ D ++ + + G ++VLVNNA IA ++ + VN+
Sbjct: 55 QVDLEDERERVRF----VEEAAYALGRVDVLVNNAAIA-APGSALTVRLPEWRRVLEVNL 109
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
TAP+ L+ ++K AIVNV+S+ G + Y SK
Sbjct: 110 TAPMHLSALAAREMRKVG-----------GGAIVNVASVQGLF---AEQENAAYNASKGG 155
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L TRSL++DL +I A+ PG + T+
Sbjct: 156 LVNLTRSLALDLAPLRIRVNAVAPGAIATEA 186
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 79.9 bits (198), Expect = 5e-18
Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 28/227 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +ITG G+GL +VL G A + + A A +D
Sbjct: 12 KVAIITGACGGIGLETSRVLARAG----ARVVLADLPETDLAG--AAASVGRGAVHHVVD 65
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFL-VNVT 118
+T+ + V + + D D L+++ NNA + L + D VN
Sbjct: 66 LTN---EVSV--RALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNAR 120
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+++ K +P L A AIVN+SS Y C+KAA+
Sbjct: 121 GTMLMCKYAIPRLISAG-----------GGAIVNISSATAHA---AYDMSTAYACTKAAI 166
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
TR ++ + A+ PG V+T P + A
Sbjct: 167 ETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHH 213
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 79.9 bits (198), Expect = 5e-18
Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ ++TG G+G ++ G A++ N+D AV + + S + +D
Sbjct: 28 RVCIVTGGGSGIGRATAELFAKNG----AYVVVADVNEDAAVRVAN--EIGSKAFGVRVD 81
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
V+ + + + G ++VLVNNAG + + E VNV
Sbjct: 82 VSSAKDAESM----VEKTTAKWGRVDVLVNNAGFG-TTGNVVTIPEETWDRIMSVNVKGI 136
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNA 180
+ +K ++P++++ G +I+N +S + Y SK A+++
Sbjct: 137 FLCSKYVIPVMRRN---------GG--GSIINTTSYTATS---AIADRTAYVASKGAISS 182
Query: 181 ATRSLSIDLKGDKIIATAMHPGWVKTDM 208
TR++++D + I A+ PG + +
Sbjct: 183 LTRAMAMDHAKEGIRVNAVAPGTIDSPY 210
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 80.0 bits (198), Expect = 5e-18
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
+S+L+TG +G+G G+ V G A++ R+ + + A N+ +
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARAG----ANVAVAARSPRELSSVTAELGELGAGNVIGVR 97
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
LDV+D D VV G L+V+ NAGI L PEQ+++ V
Sbjct: 98 LDVSDPGSCADA----ARTVVDAFGALDVVCANAGI----FPEARLDTMTPEQLSEVLDV 149
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
NV + + L L + G R ++ SSI G + G+ Y SK
Sbjct: 150 NVKGTVYTVQACLAPLTAS---------GRGR--VILTSSITGPVTGYP--GWSHYGASK 196
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AA R+ +I+L + A+ PG + T+
Sbjct: 197 AAQLGFMRTAAIELAPRGVTVNAILPGNILTEG 229
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 79.6 bits (197), Expect = 8e-18
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 27/210 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLA-LAQQHSNLHVIE 59
K L+TG RG+G M L G + + + A E++A + + S+ ++
Sbjct: 30 KVALVTGAGRGIGREMAMELGRRG----CKVIVNYANSTESAEEVVAAIKKNGSDAACVK 85
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
+V +F++ VK G L+++ +N+G+ F + + PE+ F +N
Sbjct: 86 ANVGVVE-DIVRMFEE---AVKIFGKLDIVCSNSGVV-SFGHVKDVTPEEFDRVFTINTR 140
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + L+ G ++ + SI G + Y SK A+
Sbjct: 141 GQFFVAREAYKHLEIG---------GR----LILMGSITGQAKAV--PKHAVYSGSKGAI 185
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
R ++ID+ KI + PG +KTDM
Sbjct: 186 ETFARCMAIDMADKKITVNVVAPGGIKTDM 215
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 78.7 bits (195), Expect = 1e-17
Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 32/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK---AVELLALAQQHSNLHVI 58
K ++T + GLG L G A + RN++K A +A + + ++
Sbjct: 8 KLAVVTAGSSGLGFASALELARNG----ARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
D+ + + G ++LV + G R G E + + +
Sbjct: 64 AGDIREPGDIDRL----FEKARDLGGADILVYSTGG----PRPGRFMELGVEDWDESYRL 115
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ + + + + + G R +V + S+ +
Sbjct: 116 LARSAVWVGRRAAEQMVEK---------GWGR--MVYIGSVTLLRPWQDLA---LSNIMR 161
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ R+L+++L + A+ P + TD
Sbjct: 162 LPVIGVVRTLALELAPHGVTVNAVLPSLILTDR 194
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 78.4 bits (194), Expect = 1e-17
Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 31/211 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ ++TG ++G+G + + L G A + + A ++A + +E+D
Sbjct: 13 RKAIVTGGSKGIGAAIARALDKAG----ATVAIADLDVMAAQAVVAGLENGG--FAVEVD 66
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
VT + + + G ++L NAG+ + + E+ +F VN
Sbjct: 67 VTKRASVDAA----MQKAIDALGGFDLLCANAGV----STMRPAVDITDEEWDFNFDVNA 118
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ + ++ ++ IVN +S+ + Y SK A
Sbjct: 119 RGVFLANQIACRHFLASN----------TKGVIVNTASLAAKVGAPLLA---HYSASKFA 165
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T++L+ ++ I + PG+VKT M
Sbjct: 166 VFGWTQALAREMAPKNIRVNCVCPGFVKTAM 196
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 78.8 bits (195), Expect = 1e-17
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL 114
++ D++D S + + + + G L++L AG + L EQ F
Sbjct: 103 VLLPGDLSDESFARSL----VHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFA 158
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
VNV A +T+ +PLL K G+S I+ SSI Y +
Sbjct: 159 VNVFALFWITQEAIPLLPK----------GAS---IITTSSIQA---YQPSPHLLDYAAT 202
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KAA+ +R L+ + I + PG + T +
Sbjct: 203 KAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL 236
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 77.9 bits (193), Expect = 2e-17
Identities = 55/237 (23%), Positives = 90/237 (37%), Gaps = 31/237 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +ITG G+G + + G A I E A+ + ++ D
Sbjct: 8 KLAVITGGANGIGRAIAERFAVEG----ADIAIADLVPAPEAEA-AIRNLGRRVLTVKCD 62
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
V+ + V+ G ++LVNNAGI L EQ F +NV
Sbjct: 63 VSQPGDVEAF----GKQVISTFGRCDILVNNAGI----YPLIPFDELTFEQWKKTFEINV 114
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ ++ K +P +K+ G R I+N++S ++ Y +KAA
Sbjct: 115 DSGFLMAKAFVPGMKRN---------GWGR--IINLTSTTYWLKIEAYT---HYISTKAA 160
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
TR+L+ DL D I A+ P V+T ++A + ++Q I L
Sbjct: 161 NIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVP 217
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 77.9 bits (193), Expect = 2e-17
Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ L+TG +RG+G + + LV G + RN ++A + L + D
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARG----YRVAIASRNPEEAAQSLGA-------VPLPTD 51
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH-----FLV 115
+ + V ++ G L+VLV+ A + +++ +
Sbjct: 52 LEKDDPKGLV-----KRALEALGGLHVLVHAAAV----NVRKPA--LELSYEEWRRVLYL 100
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
++ +L + P + +A G R ++ + S+ Y +K
Sbjct: 101 HLDVAFLLAQAAAPHMAEA---------GWGR--VLFIGSVTTFTAGGPVP-IPAYTTAK 148
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
AL TR+L+ + I + PG+V+T+
Sbjct: 149 TALLGLTRALAKEWARLGIRVNLLCPGYVETEF 181
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 78.3 bits (194), Expect = 2e-17
Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 30/229 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI---FATCRNKDKAVELLALAQQH-SNLHV 57
K I+I G + LG K ++ + ++ D A +L + + + +
Sbjct: 12 KVIVIAGGIKNLGALTAKTFALES----VNLVLHYHQAKDSDTANKLKDELEDQGAKVAL 67
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVN 116
+ D+++ + LF K+ G +++ +N G + + +N
Sbjct: 68 YQSDLSNEE-EVAKLFDF---AEKEFGKVDIAINTVGKV-LKKPIVETSEAEFDAMDTIN 122
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
K + G I+ +++ + + G + Y +KA
Sbjct: 123 NKVAYFFIKQAAKHMNPN---------GH----IITIATSLLAA---YTGFYSTYAGNKA 166
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
+ TR+ S +L +I A+ PG + T E A
Sbjct: 167 PVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQA 215
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 78.0 bits (193), Expect = 2e-17
Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+ L+TG G+G + LV G A++ R ++ E + + +++
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAEG----ANVLINGRREENVNETIKEIRAQYPDAILQPV 66
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTD-----HFLV 115
V D +Q DV++ +++L+NN GI + D F V
Sbjct: 67 VADLGTEQGC-----QDVIEKYPKVDILINNLGI----FEPVEY--FDIPDEDWFKLFEV 115
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N+ + + LT++ L + + R ++ ++S Y +K
Sbjct: 116 NIMSGVRLTRSYLKKMIER---------KEGR--VIFIASEAAI---MPSQEMAHYSATK 161
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ +RSL+ G + + PG T+
Sbjct: 162 TMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEG 194
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 78.0 bits (193), Expect = 2e-17
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 22/209 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ +LITG GLG L G A + + + A + + +
Sbjct: 14 RVVLITGGGSGLGRATAVRLAAEG----AKLSLVDVSSEGLEASKAAVLETAPDAEVLTT 69
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
V D S + V + ++ ++ NNAGI K + +N+
Sbjct: 70 VADVSDEAQV--EAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRG 127
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ + +L ++++ GS +VN +S+ G G Y +K +
Sbjct: 128 VFLGLEKVLKIMREQ---------GS--GMVVNTASVGGIR---GIGNQSGYAAAKHGVV 173
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDM 208
TR+ +++ I A+ PG + T M
Sbjct: 174 GLTRNSAVEYGRYGIRINAIAPGAIWTPM 202
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 78.0 bits (193), Expect = 2e-17
Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 27/226 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLALAQQH-SNLHVIE 59
K L+TG RG+G + L LG A + + A ++++ + S+ I+
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGRLG----AKVVVNYANSTKDAEKVVSEIKALGSDAIAIK 74
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
D+ + LF V G L++ V+N+G+ F L + E+ F +N
Sbjct: 75 ADIRQVP-EIVKLFDQ---AVAHFGHLDIAVSNSGVV-SFGHLKDVTEEEFDRVFSLNTR 129
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + L + G IV SS Y SK A+
Sbjct: 130 GQFFVAREAYRHLTEG---------GR----IVLTSSNTSKDFSV--PKHSLYSGSKGAV 174
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGI 224
++ R S D KI A+ PG TDM + + T+
Sbjct: 175 DSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYT 220
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 77.5 bits (192), Expect = 2e-17
Identities = 46/213 (21%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+TG +RG+G + L G A + T ++ A + + ++ + L
Sbjct: 6 KVALVTGASRGIGFEVAHALASKG----ATVVGTATSQASAEKFENSMKEKGFKARGLVL 61
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
+++D Q+ +++ + +++LVNNAGI TR L+ ++ N
Sbjct: 62 NISDIESIQNF----FAEIKAENLAIDILVNNAGI----TRDNLMMRMSEDEWQSVINTN 113
Query: 117 VTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+++ ++K + ++KK G I+++ S++GS + Q Y +K
Sbjct: 114 LSSIFRMSKECVRGMMKKRW--------GR----IISIGSVVGSAGNPGQTN---YCAAK 158
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + ++SL+ ++ I + PG++ TDM
Sbjct: 159 AGVIGFSKSLAYEVASRNITVNVVAPGFIATDM 191
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 77.3 bits (191), Expect = 3e-17
Identities = 38/211 (18%), Positives = 62/211 (29%), Gaps = 24/211 (11%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M I ITG G+G + ++L G + R + L+ +
Sbjct: 1 MSVIAITGSASGIGAALKELLARAG----HTVIGIDRGQADIEADLSTPGGRE--TAVAA 54
Query: 61 DVTDFSKQQDVLFKD--ISDVVKDQGLNVLVNNAGIAAKFTRLG-LLKPEQMTDHFLVNV 117
+ D L + + GL V VN G++A L L Q +V
Sbjct: 55 VLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
A LP+++ + Y SK A
Sbjct: 115 IAATQPGAAELPMVEAML-----------AGDEARAIELAEQ----QGQTHLAYAGSKYA 159
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ R +D G + + PG V+T +
Sbjct: 160 VTCLARRNVVDWAGRGVRLNVVAPGAVETPL 190
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 77.6 bits (192), Expect = 4e-17
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 21/227 (9%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLALAQQH-SNLHVIE 59
+L+TG +RG+G + ++ G + N++ A ++A + I
Sbjct: 27 PVVLVTGGSRGIGAAVCRLAARQG----WRVGVNYAANREAADAVVAAITESGGEAVAIP 82
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
DV + + +F V + G L+ LVNNAGI R+ + E++ VNVT
Sbjct: 83 GDVGNAA-DIAAMFSA---VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVT 138
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
++ + + + AIVNVSS+ + + + Y SKAA+
Sbjct: 139 GSILCAAEAVRRMSRLY--------SGQGGAIVNVSSMAAIL--GSATQYVDYAASKAAI 188
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
+ T L+ ++ + I A+ PG ++TD+ S + A +
Sbjct: 189 DTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSV 235
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 76.8 bits (190), Expect = 5e-17
Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 25/210 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLALAQQH-SNLHVIE 59
K ++ITG + GLG M A + +D+A +L ++ ++
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEK----AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVK 63
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
DVT S ++ + +K+ G L+V++NNAG+ + N+T
Sbjct: 64 GDVTVESDVINL----VQSAIKEFGKLDVMINNAGLE-NPVSSHEMSLSDWNKVIDTNLT 118
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ ++ + + G+ ++N+SS+ I F Y SK +
Sbjct: 119 GAFLGSREAIKYFVENDIK------GT----VINMSSVHEKI---PWPLFVHYAASKGGM 165
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
T +L+++ I + PG + T +
Sbjct: 166 KLMTETLALEYAPKGIRVNNIGPGAINTPI 195
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 77.3 bits (191), Expect = 5e-17
Identities = 32/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNL------ 55
K++ I+G +RG+GL + K + G A++ ++ + +L +
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAADG----ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 56 --HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH 112
I D+ D ++ V+ G +++ VNNA + + ++
Sbjct: 66 QALPIVGDIRDGDAVAAA----VAKTVEQFGGIDICVNNASAI-NLGSIEEVPLKRFDLM 120
Query: 113 FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
+ V ++++ +P +K I+ +S + + PY
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKG-----------RDNPHILTLSPPIR--LEPKWLRPTPYM 167
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLE 216
+K + ++ +L+ I + + P N
Sbjct: 168 MAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLLGG 211
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 76.8 bits (190), Expect = 7e-17
Identities = 51/213 (23%), Positives = 82/213 (38%), Gaps = 27/213 (12%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFAT-CRNKDKAVELLA-LAQQHSNLHVIELDV 62
+TG +RG+G + K L G A + T ++A +++ + Q I D
Sbjct: 35 FVTGGSRGIGAAIAKRLALEG----AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADN 90
Query: 63 TDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPL 121
D + ++ V+ G L++LVN+AGI L + VN AP
Sbjct: 91 RDAE-AIEQAIRE---TVEALGGLDILVNSAGIW-HSAPLEETTVADFDEVMAVNFRAPF 145
Query: 122 MLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALNAA 181
+ ++ L G I+ + S + + G Y SKAAL
Sbjct: 146 VAIRSASRHLGDG---------GR----IITIGSNLAELVPWP--GISLYSASKAALAGL 190
Query: 182 TRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAP 214
T+ L+ DL I +HPG TDM ++
Sbjct: 191 TKGLARDLGPRGITVNIVHPGSTDTDMNPADGD 223
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 76.8 bits (190), Expect = 7e-17
Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 28/230 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++TG G+GL + + L G H+ + D A A + +D
Sbjct: 30 KVAIVTGAGAGIGLAVARRLADEG----CHVLCADIDGDAADA--AATKIGCGAAACRVD 83
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
V+D +Q + + D G++ LV NAG+ L E +N+
Sbjct: 84 VSD---EQQI--IAMVDACVAAFGGVDKLVANAGVV-HLASLIDTTVEDFDRVIAINLRG 137
Query: 120 PLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAALN 179
+ TK P + + AIVN+SS+ G + GG Y SKA +
Sbjct: 138 AWLCTKHAAPRMIERG-----------GGAIVNLSSLAGQV---AVGGTGAYGMSKAGII 183
Query: 180 AATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQ 229
+R + +L+ I + + P +V T M + + GA AG + +
Sbjct: 184 QLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMI 233
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 77.6 bits (191), Expect = 7e-17
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNL------ 55
++ ITG +RG+G + G A+I + +LL +
Sbjct: 46 CTVFITGASRGIGKAIALKAAKDG----ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 56 --HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH 112
+DV D + + +K G +++LVNNA T +++
Sbjct: 102 KALPCIVDVRDEQQISAA----VEKAIKKFGGIDILVNNASA-ISLTNTLDTPTKRLDLM 156
Query: 113 FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
VN + +K +P LKK S A I+N+S + + Y
Sbjct: 157 MNVNTRGTYLASKACIPYLKK-----------SKVAHILNISPPLN-LNPVWFKQHCAYT 204
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGW-VKTDM 208
+K ++ ++ + KG+ I A+ P + T
Sbjct: 205 IAKYGMSMYVLGMAEEFKGE-IAVNALWPKTAIHTAA 240
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 76.0 bits (188), Expect = 1e-16
Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
+ ++TG + G GL + + G + A + + E + +
Sbjct: 3 RVAIVTGASSGNGLAIATRFLARG----DRVAALDLSAETLEETARTHWHAYADKVLRVR 58
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLVN 116
DV D I+ ++ G ++VLVNNAGI ++ L EQ VN
Sbjct: 59 ADVADEGDVNAA----IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVN 114
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
V + + +LP + IVN++S+ + G Y SK
Sbjct: 115 VRGIFLGCRAVLPHMLLQG-----------AGVIVNIASVASLV---AFPGRSAYTTSKG 160
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A+ T+S+++D G I A+ PG ++T M
Sbjct: 161 AVLQLTKSVAVDYAGSGIRCNAVCPGMIETPM 192
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 76.0 bits (188), Expect = 1e-16
Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 39/211 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K++ +TG +G+G V G A + + A Q+ +D
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEAG----AKVTGFDQ---------AFTQEQYPFATEVMD 54
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
V D ++ V ++ + L+ LVN AGI R+G E F VNV
Sbjct: 55 VADAAQVAQV----CQRLLAETERLDALVNAAGI----LRMGATDQLSKEDWQQTFAVNV 106
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
L + + ++ IV V+S Y SKAA
Sbjct: 107 GGAFNLFQQTMNQFRRQ---------RGGA--IVTVASDAAHTPRIGMSA---YGASKAA 152
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L + S+ ++L G + + PG TDM
Sbjct: 153 LKSLALSVGLELAGSGVRCNVVSPGSTDTDM 183
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 75.7 bits (187), Expect = 2e-16
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 33/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA---LAQQHSNLHVI 58
K ++TG G+GLG+ L G A I +E + AQ +
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQG----ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFL 114
D++ + + + + V+ G +++LVNNAGI L+ E+
Sbjct: 61 GADLSKGEAVRGL----VDNAVRQMGRIDILVNNAGI----QHTALIEDFPTEKWDAILA 112
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
+N++A T LP +KK G R I+N++S G + + Y +
Sbjct: 113 LNLSAVFHGTAAALPHMKKQ---------GFGR--IINIASAHGLVASANKS---AYVAA 158
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
K + T+ +++ G I A A+ PGWV+T +
Sbjct: 159 KHGVVGFTKVTALETAGQGITANAICPGWVRTPL 192
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 75.7 bits (187), Expect = 2e-16
Identities = 48/230 (20%), Positives = 73/230 (31%), Gaps = 38/230 (16%)
Query: 5 LITGCNRGLGLGMIKVLVGLG--------NNQPAHIFATCRNKDKAVELLALAQQH-SNL 55
L+TG RG G L G + E ++
Sbjct: 14 LVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKA 73
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL 114
+ E+DV D + +++ V + G L+V+V NAGI L + D F
Sbjct: 74 YTAEVDVRDRAAVSRE----LANAVAEFGKLDVVVANAGICPLGAHL---PVQAFADAFD 126
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMG--------SIEDNTQG 166
V+ + LP L A+I+ S+ G
Sbjct: 127 VDFVGVINTVHAALPYLTS-------------GASIITTGSVAGLIAAAQPPGAGGPQGP 173
Query: 167 GFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLE 216
G Y +K +++ T L+ L I A +HP V TDM S
Sbjct: 174 GGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYR 223
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 75.3 bits (186), Expect = 2e-16
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 29/230 (12%)
Query: 2 KSILITGCNRGLGL---------GMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH 52
+ ITG RG G G + V + P+ + + D E + L +
Sbjct: 12 RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA 71
Query: 53 -SNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT 110
+ +D DF + + V + D V G L+++V NAG+AA + PE
Sbjct: 72 NRRIVAAVVDTRDFDRLRKV----VDDGVAALGRLDIIVANAGVAA-PQAWDDITPEDFR 126
Query: 111 DHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHP 170
D +NVT P + + +I+ +SS G Q
Sbjct: 127 DVMDINVTGTWNTVMAGAPRIIEGGRG----------GSIILISSAAGMK---MQPFMIH 173
Query: 171 YRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAA 220
Y SK A+ R+ + +L I ++HPG V T MG + VG A
Sbjct: 174 YTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQA 223
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 75.3 bits (186), Expect = 2e-16
Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ L+TG G+G + + G A + +DK E+ A ++ V +
Sbjct: 28 RKALVTGATGGIGEAIARCFHAQG----AIVGLHGTREDKLKEIAA--DLGKDVFVFSAN 81
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
++D + + ++ +++LVNNAGI TR GL + + D VN+
Sbjct: 82 LSDRKSIKQL----AEVAEREMEGIDILVNNAGI----TRDGLFVRMQDQDWDDVLAVNL 133
Query: 118 TAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
TA LT+ ++ ++++ G I+N++SI+G + + Q Y +KA
Sbjct: 134 TAASTLTRELIHSMMRRRY--------GR----IINITSIVGVVGNPGQTN---YCAAKA 178
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L +++L+ ++ I + PG++K+ M
Sbjct: 179 GLIGFSKALAQEIASRNITVNCIAPGFIKSAM 210
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 75.0 bits (185), Expect = 3e-16
Identities = 48/233 (20%), Positives = 77/233 (33%), Gaps = 35/233 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCR-NKDKAVELLALAQQHS--NLHVI 58
+ +ITG R +G + L G + R ++ A L+A + +
Sbjct: 12 PAAVITGGARRIGHSIAVRLHQQG----FRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL------------- 104
+ D++ S D I + G +VLVNNA L
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASA----YYPTPLLPGDDTNGAADAK 123
Query: 105 -KPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDN 163
Q+ + F N APL L + + S ++VN+ M +
Sbjct: 124 PIDAQVAELFGSNAVAPLFLIRAFARRQGEG------GAWRSRNLSVVNLCDAMTDL--- 174
Query: 164 TQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLE 216
GF Y +K AL TR+ +++L I A+ PG E
Sbjct: 175 PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQE 227
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 74.9 bits (185), Expect = 3e-16
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 33/212 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K ILITG + G+G G+ + L G A I R + + + + L
Sbjct: 5 KVILITGASGGIGEGIARELGVAG----AKILLGARRQARIEAIATEIRDAGGTALAQVL 60
Query: 61 DVTDFSKQQDVLFKDISDVVKD-QGLNVLVNNAGIAAKFTRLGLLKPE---QMTDHFLVN 116
DVTD + V V ++VLVNNAG+ + L +K + +M D VN
Sbjct: 61 DVTD---RHSV-AAFAQAAVDTWGRIDVLVNNAGVMP-LSPLAAVKVDEWERMID---VN 112
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ L +LP+++ I+N+ SI Y +K
Sbjct: 113 IKGVLWGIGAVLPIMEA-----------QRSGQIINIGSIGALS---VVPTAAVYCATKF 158
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A+ A + L + I T ++PG V++++
Sbjct: 159 AVRAISDGLRQESTN--IRVTCVNPGVVESEL 188
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 75.0 bits (185), Expect = 3e-16
Identities = 43/211 (20%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA---LAQQHSNLHVI 58
K+ +ITG G+GL + + L G A+I + + +
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKAG----ANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
D+T S+ D+ ++ V G ++LVNNAG+ ++ EQ VN+
Sbjct: 82 PADMTKPSEIADM----MAMVADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNL 136
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
++ + +P +KK G R I+N++S G + + Y +K
Sbjct: 137 SSSFHTIRGAIPPMKKK---------GWGR--IINIASAHGLVASPFKS---AYVAAKHG 182
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+++++++ + ++ PG+V T +
Sbjct: 183 IMGLTKTVALEVAESGVTVNSICPGYVLTPL 213
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 73.7 bits (182), Expect = 6e-16
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 38/212 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+ LITG + G+G + ++L LG + + + N++K L + N + +
Sbjct: 15 KTSLITGASSGIGSAIARLLHKLG----SKVIISGSNEEKLKSLGNALKD--NYTIEVCN 68
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
+ + + S+++ L++LV NAGI T L K + +N+
Sbjct: 69 LANKE--------ECSNLISKTSNLDILVCNAGI----TSDTLAIRMKDQDFDKVIDINL 116
Query: 118 TAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
A +L + + +++K G I+N+SSI+G + Q Y SKA
Sbjct: 117 KANFILNREAIKKMIQKRY--------GR----IINISSIVGIAGNPGQAN---YCASKA 161
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L T+SLS ++ I A+ PG++K+DM
Sbjct: 162 GLIGMTKSLSYEVATRGITVNAVAPGFIKSDM 193
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 74.1 bits (183), Expect = 7e-16
Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 33/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K L+TG RG+G + K+L +H+ R + ++ +
Sbjct: 45 KVALVTGAGRGIGREIAKMLAKSV----SHVICISRTQKSCDSVVDEIKSFGYESSGYAG 100
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
DV+ + +V I+ ++ + +++LVNNAGI TR L K ++ D N
Sbjct: 101 DVSKKEEISEV----INKILTEHKNVDILVNNAGI----TRDNLFLRMKNDEWEDVLRTN 152
Query: 117 VTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ + +T+ + ++ G I+N+SSI+G + Q Y SK
Sbjct: 153 LNSLFYITQPISKRMINNRY--------GR----IINISSIVGLTGNVGQAN---YSSSK 197
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + T+SL+ +L I A+ PG++ +DM
Sbjct: 198 AGVIGFTKSLAKELASRNITVNAIAPGFISSDM 230
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 74.2 bits (183), Expect = 8e-16
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDK---AVELLALAQQHSNLHVI 58
K ITG GLG GM +L LG A R D E ++ +Q + +H I
Sbjct: 27 KVAFITGGGTGLGKGMTTLLSSLG----AQCVIASRKMDVLKATAEQIS-SQTGNKVHAI 81
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT-DHFL-- 114
+ DV D Q+ +S+++K G N+++NNA + E+++ + +
Sbjct: 82 QCDVRDPDMVQNT----VSELIKVAGHPNIVINNAAG----NFISPT--ERLSPNAWKTI 131
Query: 115 --VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
+ + +T + L KA AA +++++I G P
Sbjct: 132 TDIVLNGTAFVTLEIGKQLIKAQ----------KGAAFLSITTIYAE---TGSGFVVPSA 178
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSN 212
+KA + A ++SL+ + + + PG +KT S
Sbjct: 179 SAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSR 218
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 73.7 bits (182), Expect = 8e-16
Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 25/234 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +ITG G+G K+ V G A + D ++ + + D
Sbjct: 17 KVAIITGGAGGIGETTAKLFVRYG----AKVVIADIADDHGQKVCNNIGSPDVISFVHCD 72
Query: 62 VTDFSKQQDVLFKDISDVVKDQ--GLNVLVNNAGIAAKFTRLGLLKPEQMTDHFL-VNVT 118
VT +DV +++ D + L+++ N G+ + L + + +NV
Sbjct: 73 VTK---DEDV--RNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVY 127
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
++ K ++ A + +IV +SI +G H Y +K A+
Sbjct: 128 GAFLVAKHAARVMIPAK-----------KGSIVFTASISSFT--AGEGVSHVYTATKHAV 174
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLG 232
T SL +L I + P V + + ++ Q G
Sbjct: 175 LGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKG 228
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 73.7 bits (182), Expect = 9e-16
Identities = 39/216 (18%), Positives = 77/216 (35%), Gaps = 34/216 (15%)
Query: 2 KSILITGC--NRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLALAQQHSNLHV- 57
K +++TG +G+G+ + +G A + A E + ++ +
Sbjct: 21 KVVVVTGASGPKGMGIEAARGCAEMG----AAVAITYASRAQGAEENVKELEKTYGIKAK 76
Query: 58 -IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDH 112
+ V + + + + DVV D G ++ + NAG T + E
Sbjct: 77 AYKCQVDSYESCEKL----VKDVVADFGQIDAFIANAGA----TADSGILDGSVEAWNHV 128
Query: 113 FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
V++ K + K+ G+ +V +S+ G I N Y
Sbjct: 129 VQVDLNGTFHCAKAVGHHFKER---------GTGS--LVITASMSGHI-ANFPQEQTSYN 176
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+KA RSL+ + D ++ PG++ T +
Sbjct: 177 VAKAGCIHMARSLANEW-RDFARVNSISPGYIDTGL 211
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 73.8 bits (182), Expect = 9e-16
Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 37/226 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCR-NKDKAVELLA--LAQQHSNLHVI 58
+ ++TG + +G + L G + + + AV L ++ + V
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQTG----YRVVIHYHNSAEAAVSLADELNKERSNTAVVC 79
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL--- 114
+ D+T+ + + I+ + G +VLVNNA L D+
Sbjct: 80 QADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASA----FYPTPLVQGDHEDNSNGKT 135
Query: 115 ----------VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNT 164
N AP +LT + K + SS +IVN+ M
Sbjct: 136 VETQVAELIGTNAIAPFLLTMSFAQRQKGTNPN-----CTSSNLSIVNLCDAMVDQ---- 186
Query: 165 QG--GFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
F Y K AL T+S +++L I + PG +
Sbjct: 187 -PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV 231
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 73.0 bits (180), Expect = 1e-15
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKA---VELLALAQQHSNLHVI 58
K L+TG +G+G + L+ G A + N + L + I
Sbjct: 8 KVALVTGAAQGIGRAFAEALLLKG----AKVALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNV 117
+ DV D + +D VV G L++LVNNAG+ + +N+
Sbjct: 64 QCDVADQQQLRDT----FRKVVDHFGRLDILVNNAGVN---------NEKNWEKTLQINL 110
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ + T L + K + G I+N+SS+ G + Q Y SK
Sbjct: 111 VSVISGTYLGLDYMSKQN--------GGEGGIIINMSSLAGLMPVAQQP---VYCASKHG 159
Query: 178 LNAATRS--LSIDLKGDKIIATAMHPGWVKTDM 208
+ TRS L+ +L + A+ PG+V T +
Sbjct: 160 IVGFTRSAALAANLMNSGVRLNAICPGFVNTAI 192
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 73.0 bits (180), Expect = 1e-15
Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 42/227 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K +L+ +RG+G + VL G A + RN++
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQEG----AEVTICARNEELLKRS-----------GHRYV 64
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNVT 118
V D K D+LF+ + +V ++LV NAG + G E +
Sbjct: 65 VCDLRKDLDLLFEKVKEV------DILVLNAGG----PKAGFFDELTNEDFKEAIDSLFL 114
Query: 119 APLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAAL 178
+ + + LP +K+ G R IV ++S ++ AL
Sbjct: 115 NMIKIVRNYLPAMKEK---------GWGR--IVAITSFSVISPIENLYT---SNSARMAL 160
Query: 179 NAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
++LS ++ I + PGW +T+ E I
Sbjct: 161 TGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI 207
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 73.4 bits (181), Expect = 1e-15
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVN 116
E+DV D+ + + V+ G L+++V NAGI L E T+ +N
Sbjct: 81 AEVDVRDYDALKAA----VDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDIN 136
Query: 117 VTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+ K +P + G +I+ SS+ G Y +K
Sbjct: 137 LAGVWKTVKAGVPHMIAG---------GRG-GSIILTSSVGGLK---AYPHTGHYVAAKH 183
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAA 220
+ R+ ++L I ++HP VKT M + ++
Sbjct: 184 GVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRP 227
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 73.3 bits (181), Expect = 1e-15
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL 114
++ D++D +D+ + + V+ G LN+LVNN L + EQ+ F
Sbjct: 100 VLLPGDLSDEQHCKDI----VQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFR 155
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
+N+ + +TK L LK+ G I+N +SI+ Y +
Sbjct: 156 INIFSYFHVTKAALSHLKQ----------GDV---IINTASIVA---YEGNETLIDYSAT 199
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
K A+ A TRSLS L I + PG + T +
Sbjct: 200 KGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 72.7 bits (179), Expect = 2e-15
Identities = 50/257 (19%), Positives = 81/257 (31%), Gaps = 68/257 (26%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M I+I+GC G+G KVL G I + +
Sbjct: 1 MSIIVISGCATGIGAATRKVLEAAG----HQIVGIDIRDAEVIA---------------- 40
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP 120
D++ ++ + ++ +G++ LV AG+ + LG + VN
Sbjct: 41 DLSTAEGRKQAIADVLAKC--SKGMDGLVLCAGLGPQTKVLGNV--------VSVNYFGA 90
Query: 121 LMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSI-------------------- 160
L LP LKK + A V +SS+ +
Sbjct: 91 TELMDAFLPALKK-----------GHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139
Query: 161 -----EDNTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPL 215
QGG Y SK AL A R + + + PG +T + A L
Sbjct: 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL--LQAGL 197
Query: 216 EVGAATAGIIQFIQSLG 232
+ I +F+ +G
Sbjct: 198 QDPRYGESIAKFVPPMG 214
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 72.1 bits (178), Expect = 2e-15
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVIE 59
K L+TG RG+G + + L G + + T + ++A + + H +E
Sbjct: 8 KVSLVTGSTRGIGRAIAEKLASAG----STVIITGTSGERAKAVAEEIANKYGVKAHGVE 63
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+++ ++ +++LVNNAGI TR L + V
Sbjct: 64 MNLLSEESINKA----FEEIYNLVDGIDILVNNAGI----TRDKLFLRMSLLDWEEVLKV 115
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+T ++T+ L ++K+ G IVN+SS++G + Q Y +
Sbjct: 116 NLTGTFLVTQNSLRKMIKQRW--------GR----IVNISSVVGFTGNVGQVN---YSTT 160
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KA L T+SL+ +L ++ A+ PG+++TDM
Sbjct: 161 KAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDM 194
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 72.2 bits (178), Expect = 2e-15
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 31/211 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+ L+TG G+GLG+ +VL G A+I +A+ D
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAG----ANIVLNGFGDPAPALA-EIARHGVKAVHHPAD 59
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
++D ++ + + + ++ G +++LVNNAGI + + E +N+
Sbjct: 60 LSDVAQIEAL----FALAEREFGGVDILVNNAGI----QHVAPVEQFPLESWDKIIALNL 111
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+A T+ LP ++ R I+N++S+ G + + Y +K
Sbjct: 112 SAVFHGTRLALPGMRAR---------NWGR--IINIASVHGLVGSTGKA---AYVAAKHG 157
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+ + ++ + A+ PGWV T +
Sbjct: 158 VVGLTKVVGLETATSNVTCNAICPGWVLTPL 188
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 72.6 bits (179), Expect = 2e-15
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 39/221 (17%)
Query: 2 KSILITGCNRGLGL---------GMIKVLVGLGNNQPAHIFATCRNKDKAVELL---ALA 49
K++ ITG +RG+GL G + + T + AV LA
Sbjct: 7 KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLA 66
Query: 50 QQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQ 108
++ D+ + + + ++ V G +++LVNNA ++
Sbjct: 67 --------LKCDIREEDQVRAA----VAATVDTFGGIDILVNNASAI-WLRGTLDTPMKR 113
Query: 109 MTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGF 168
VN + + LP L + + I+ ++ + G
Sbjct: 114 FDLMQQVNARGSFVCAQACLPHLLQ-----------APNPHILTLAPPPS-LNPAWWGAH 161
Query: 169 HPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGW-VKTDM 208
Y +K ++ T L+ + + A+ P + TD
Sbjct: 162 TGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDA 202
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 72.2 bits (178), Expect = 3e-15
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 33/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
+ ++TG +RG+G + L G A + T + A + A Q L
Sbjct: 29 QVAIVTGASRGIGRAIALELARRG----AMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL 84
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
+V D + + + +K+ G LNVLVNNAGI T+ L K ++ N
Sbjct: 85 NVNDATAVDAL----VESTLKEFGALNVLVNNAGI----TQDQLAMRMKDDEWDAVIDTN 136
Query: 117 VTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ A L++ +L P++K G IVN++S++GS + Q Y +K
Sbjct: 137 LKAVFRLSRAVLRPMMKARG--------GR----IVNITSVVGSAGNPGQVN---YAAAK 181
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + TR+L+ ++ I + PG++ TDM
Sbjct: 182 AGVAGMTRALAREIGSRGITVNCVAPGFIDTDM 214
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 71.8 bits (177), Expect = 4e-15
Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 35/219 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K ++ITG + G+G GM G A + T R K+K E + Q + +++
Sbjct: 7 KVVIITGGSSGMGKGMATRFAKEG----ARVVITGRTKEKLEEAKLEIEQFPGQILTVQM 62
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH-----FL 114
DV + Q + I + + G +++L+NNA + E ++ +
Sbjct: 63 DVRNTDDIQKM----IEQIDEKFGRIDILINNAAG----NFICPA--EDLSVNGWNSVIN 112
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
+ + ++ + + + I+N+ + G +
Sbjct: 113 IVLNGTFYCSQAIGKYWIEKGI----------KGNIINMVATYAWD---AGPGVIHSAAA 159
Query: 175 KAALNAATRSLSIDLKGDK-IIATAMHPGWVKTDMGGSN 212
KA + A T++L+++ I A+ PG ++ G
Sbjct: 160 KAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADK 198
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 71.4 bits (176), Expect = 4e-15
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+IL+TG G+G + + G A + A R + E A+A + + D
Sbjct: 7 KTILVTGAASGIGRAALDLFAREG----ASLVAVDREERLLAE--AVAALEAEAIAVVAD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
V+D + V ++ +++ G L+ + + AG+ L E VN+
Sbjct: 61 VSDPKAVEAV----FAEALEEFGRLHGVAHFAGV----AHSALSWNLPLEAWEKVLRVNL 112
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSI--MGSIEDNTQGGFHPYRCSK 175
T ++ + +L++ GS +V S+ +G+ G Y K
Sbjct: 113 TGSFLVARKAGEVLEEG---------GS----LVLTGSVAGLGAF------GLAHYAAGK 153
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ R+L+++L + + PG ++T M
Sbjct: 154 LGVVGLARTLALELARKGVRVNVLLPGLIQTPM 186
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 71.5 bits (176), Expect = 6e-15
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
+ L+TG G+GL + + L G +F R ++ L L +
Sbjct: 23 EVALVTGATSGIGLEIARRLGKEG----LRVFVCARGEEGLRTTLKELREAGVEADGRTC 78
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
DV + + + ++ VV+ G ++VLVNNAG G E D N
Sbjct: 79 DVRSVPEIEAL----VAAVVERYGPVDVLVNNAGR----PGGGATAELADELWLDVVETN 130
Query: 117 VTAPLMLTKTMLPL---LKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRC 173
+T +TK +L L++ G+ R IVN++S G PY
Sbjct: 131 LTGVFRVTKQVLKAGGMLER----------GTGR--IVNIASTGGKQGVVHAA---PYSA 175
Query: 174 SKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
SK + T++L ++L I A+ PG+V+T M
Sbjct: 176 SKHGVVGFTKALGLELARTGITVNAVCPGFVETPM 210
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 71.0 bits (175), Expect = 6e-15
Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 42/212 (19%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+S+L+TG NRG+GL + + L G + T R L +E+D
Sbjct: 16 RSVLVTGGNRGIGLAIAQRLAADG----HKVAVTHRGSGAPKGLFG----------VEVD 61
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
VTD + V + QG + VLV+NAG+ + L E+ N+
Sbjct: 62 VTDSDAVDRA----FTAVEEHQGPVEVLVSNAGL----SADAFLMRMTEEKFEKVINANL 113
Query: 118 TAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
T + + + + G ++ + S+ G Q Y SKA
Sbjct: 114 TGAFRVAQRASRSMQRNKF--------GR----MIFIGSVSGLWGIGNQAN---YAASKA 158
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ RS++ +L + A + PG++ TDM
Sbjct: 159 GVIGMARSIARELSKANVTANVVAPGYIDTDM 190
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 71.0 bits (175), Expect = 7e-15
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 34/212 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K L+TG +RG+G + ++L G A + T ++ A + N + L+
Sbjct: 10 KVALVTGASRGIGKAIAELLAERG----AKVIGTATSESGAQAISDYLG--DNGKGMALN 63
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
VT+ + V + + + G +++LVNNAGI TR LL K E+ +D N+
Sbjct: 64 VTNPESIEAV----LKAITDEFGGVDILVNNAGI----TRDNLLMRMKEEEWSDIMETNL 115
Query: 118 TAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
T+ L+K +L ++KK G I+NV S++G++ + Q Y +KA
Sbjct: 116 TSIFRLSKAVLRGMMKKRQ--------GR----IINVGSVVGTMGNAGQAN---YAAAKA 160
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+S++ ++ + + PG+++TDM
Sbjct: 161 GVIGFTKSMAREVASRGVTVNTVAPGFIETDM 192
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 71.0 bits (175), Expect = 7e-15
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+S+L+TG NRG+GL + + G + T R+ + LA ++ D
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADAG----DKVAITYRSGEPPEGFLA----------VKCD 67
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
+TD + + ++ + G + VL+ NAG+ T+ LL E T N+
Sbjct: 68 ITDTEQVEQA----YKEIEETHGPVEVLIANAGV----TKDQLLMRMSEEDFTSVVETNL 119
Query: 118 TAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
T + K +L+ G +V +SS++G + Q Y SKA
Sbjct: 120 TGTFRVVKRANRAMLRAKK--------GR----VVLISSVVGLLGSAGQAN---YAASKA 164
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
L RSL+ +L I + PG+V TDM
Sbjct: 165 GLVGFARSLARELGSRNITFNVVAPGFVDTDM 196
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 70.6 bits (174), Expect = 7e-15
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLAL--AQQHSNLHV 57
M+ LITG +RG+G + L G + +N++KA E+ + + V
Sbjct: 1 MRKALITGASRGIGRAIALRLAEDG----FALAIHYGQNREKAEEVAEEARRRGSPLVAV 56
Query: 58 IELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHF 113
+ ++ + + + + G L+ LVNNAGI TR LL K E
Sbjct: 57 LGANLLEAEAATAL----VHQAAEVLGGLDTLVNNAGI----TRDTLLVRMKDEDWEAVL 108
Query: 114 LVNVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
N++A T+ + ++K G IVN++S++G + + Q Y
Sbjct: 109 EANLSAVFRTTREAVKLMMKARF--------GR----IVNITSVVGILGNPGQAN---YV 153
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
SKA L TR+++ + I A+ PG+++T+M
Sbjct: 154 ASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEM 189
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 70.7 bits (174), Expect = 1e-14
Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 27/217 (12%)
Query: 2 KSILITGCNRGLGLGM--------IKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH- 52
K ITG RG G ++ Q + D E + +
Sbjct: 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88
Query: 53 SNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTD 111
+ ++DV DF Q + D V G L++++ NA +A++ TRL + P+ D
Sbjct: 89 RRIIASQVDVRDFDAMQAA----VDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRD 144
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
VN+ + + +P + +IV SSI G Y
Sbjct: 145 MIDVNLNGAWITARVAIPHIMAGKRG----------GSIVFTSSIGGLR---GAENIGNY 191
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
SK L+ R+++++L I + P V T M
Sbjct: 192 IASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPM 228
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 70.3 bits (173), Expect = 1e-14
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 29/230 (12%)
Query: 2 KSILITGCNRGLGL---------GMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH 52
+ ITG RG G G + + A + + + E L +
Sbjct: 16 RVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ 75
Query: 53 -SNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT 110
LDV D + +++ ++D ++ G L+V+V NAG+ + + R+ L EQ
Sbjct: 76 GRKALTRVLDVRDDAALREL----VADGMEQFGRLDVVVANAGVLS-WGRVWELTDEQWD 130
Query: 111 DHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHP 170
VN+T + +P + +A +IV VSS G G
Sbjct: 131 TVIGVNLTGTWRTLRATVPAMIEAGNG----------GSIVVVSSSAGLK---ATPGNGH 177
Query: 171 YRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAA 220
Y SK L A T +L+I+L I ++HP V+T M A +E+ A
Sbjct: 178 YSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFAR 227
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 69.8 bits (172), Expect = 1e-14
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 34/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLA-LAQQHSNLHVIE 59
+++TG +RG+G + L G + R+ A E+ +
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAG----CKVLVNYARSAKAAEEVSKQIEAYGGQAITFG 57
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV+ + + + + + G ++V+VNNAGI TR LL K Q + +
Sbjct: 58 GDVSKEADVEAM----MKTAIDAWGTIDVVVNNAGI----TRDTLLIRMKKSQWDEVIDL 109
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+T + T+ ++KK G I+N++S++G I + Q Y +
Sbjct: 110 NLTGVFLCTQAATKIMMKKRK--------GR----IINIASVVGLIGNIGQAN---YAAA 154
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KA + +++ + + I + PG++ +DM
Sbjct: 155 KAGVIGFSKTAAREGASRNINVNVVCPGFIASDM 188
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 70.8 bits (174), Expect = 1e-14
Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 41/239 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNL------ 55
+ ++TG G+G ++K L+ LG +++ R ++ Q +
Sbjct: 19 QVAIVTGGATGIGKAIVKELLELG----SNVVIASRKLERLKSAADELQANLPPTKQARV 74
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMTDH-- 112
I+ ++ + + ++ + + G +N LVNN G L E ++
Sbjct: 75 IPIQCNIRNEEEVNNL----VKSTLDTFGKINFLVNNGGG----QFLSPA--EHISSKGW 124
Query: 113 ---FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFH 169
N+T + K + K +IVN+
Sbjct: 125 HAVLETNLTGTFYMCKAVYSSWMKEH-----------GGSIVNIIVPTK----AGFPLAV 169
Query: 170 PYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFI 228
++A + T+SL+++ I + PG + + N + G Q I
Sbjct: 170 HSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI 228
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 70.3 bits (173), Expect = 2e-14
Identities = 52/252 (20%), Positives = 85/252 (33%), Gaps = 32/252 (12%)
Query: 2 KSILITGCNRGLGL---------GMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQH 52
K ITG RG G G ++ +Q A + ++ + L +
Sbjct: 14 KVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI 72
Query: 53 -SNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT 110
S + + DV D + + + G L+++V NAGI + +
Sbjct: 73 GSRIVARQADVRDRESLSAA----LQAGLDELGRLDIVVANAGI----APMSA-GDDGWH 123
Query: 111 DHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSI-EDNTQGGFH 169
D VN+T K +P L K + +IV +SS G + G
Sbjct: 124 DVIDVNLTGVYHTIKVAIPTLVKQG----------TGGSIVLISSSAGLAGVGSADPGSV 173
Query: 170 PYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQ 229
Y +K + R + L G I ++HP V+T M + E A A
Sbjct: 174 GYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPG 233
Query: 230 SLGEAHNGGFFE 241
++G A
Sbjct: 234 AMGNAMPVEVLA 245
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 69.9 bits (172), Expect = 2e-14
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 34/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLA-LAQQHSNLHVIE 59
+ L+TG +RG+G + L G A + + A E++A +A ++
Sbjct: 29 RIALVTGASRGIGRAIALELAAAG----AKVAVNYASSAGAADEVVAAIAAAGGEAFAVK 84
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV+ S+ + + + V++ G L+VLVNNAGI TR LL K + +
Sbjct: 85 ADVSQESEVEAL----FAAVIERWGRLDVLVNNAGI----TRDTLLLRMKRDDWQSVLDL 136
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+ + ++ +LK+ S G I+N++S++G + + Q Y +
Sbjct: 137 NLGGVFLCSRAAAKIMLKQRS--------GR----IINIASVVGEMGNPGQAN---YSAA 181
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KA + T++++ +L I A+ PG++ TDM
Sbjct: 182 KAGVIGLTKTVAKELASRGITVNAVAPGFIATDM 215
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 70.0 bits (172), Expect = 2e-14
Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 35/212 (16%)
Query: 5 LITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIELDVT 63
+TG + G+GL + + L G ++ R+ + L ++ DVT
Sbjct: 28 FVTGVSSGIGLAVARTLAARG----IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVT 83
Query: 64 DFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNVTA 119
+ ++ V+ G + +LVN+AG G D N+T
Sbjct: 84 STDEVHAA----VAAAVERFGPIGILVNSAGR----NGGGETADLDDALWADVLDTNLTG 135
Query: 120 PLMLTKTMLPL---LKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKA 176
+T+ +L + G R IVN++S G PY SK
Sbjct: 136 VFRVTREVLRAGGMREA----------GWGR--IVNIASTGGKQGVMYAA---PYTASKH 180
Query: 177 ALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ T+S+ +L I A+ PG+V+T M
Sbjct: 181 GVVGFTKSVGFELAKTGITVNAVCPGYVETPM 212
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 69.0 bits (170), Expect = 3e-14
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 34/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLA-LAQQHSNLHVIE 59
KS L+TG +RG+G + L G ++ +K+KA ++ + + + I+
Sbjct: 5 KSALVTGASRGIGRSIALQLAEEG----YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQ 60
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+V D + + + I +VV G L+VLVNNAGI TR LL K ++ D
Sbjct: 61 ANVADADEVKAM----IKEVVSQFGSLDVLVNNAGI----TRDNLLMRMKEQEWDDVIDT 112
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+ + +L++ S G+ I+N+SS++G++ + Q Y +
Sbjct: 113 NLKGVFNCIQKATPQMLRQRS--------GA----IINLSSVVGAVGNPGQAN---YVAT 157
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KA + T+S + +L I A+ PG++ +DM
Sbjct: 158 KAGVIGLTKSAARELASRGITVNAVAPGFIVSDM 191
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 69.0 bits (170), Expect = 3e-14
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHI-FATCRNKDKAVELLA-LAQQHSNLHVIE 59
K L+TG +RG+G + L G A++ N+ KA E++ + + S+ +
Sbjct: 5 KVALVTGASRGIGRAIAIDLAKQG----ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVR 60
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
DV + ++ + V G +++LVNNAG+ T+ LL K E+
Sbjct: 61 ADVANAEDVTNM----VKQTVDVFGQVDILVNNAGV----TKDNLLMRMKEEEWDTVINT 112
Query: 116 NVTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
N+ + TK + ++++ G IVN++S++G + Q Y +
Sbjct: 113 NLKGVFLCTKAVSRFMMRQRH--------GR----IVNIASVVGVTGNPGQAN---YVAA 157
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
KA + T++ + +L I A+ PG++ TDM
Sbjct: 158 KAGVIGLTKTSAKELASRNITVNAIAPGFIATDM 191
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 69.1 bits (170), Expect = 4e-14
Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 2 KSILITG-CNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVI 58
K +L+T G+G + + G A + + ++ + E + +
Sbjct: 23 KVVLVTAAAGTGIGSTTARRALLEG----ADVVISDYHERRLGETRDQLADLGLGRVEAV 78
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFL 114
DVT + I+ V+ G L+VLVNNAG+ + E+
Sbjct: 79 VCDVTSTEAVDAL----ITQTVEKAGRLDVLVNNAGL----GGQTPVVDMTDEEWDRVLN 130
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCS 174
V +T+ + T+ L + G IVN +S++G Q Y +
Sbjct: 131 VTLTSVMRATRAALRYFRGVDHG------G----VIVNNASVLGWR---AQHSQSHYAAA 177
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGII 225
KA + A TR +I+ + A+ P + + E+ A
Sbjct: 178 KAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDE 228
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 68.8 bits (169), Expect = 4e-14
Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 32/214 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHV--IE 59
K ITG G+G + ++ + G H R+ + + + +
Sbjct: 28 KVAFITGGGSGIGFRIAEIFMRHG----CHTVIASRSLPRVLTAARKLAGATGRRCLPLS 83
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGL---LKPEQMTDHFLV 115
+DV + +K+ G +++L+N A L L +
Sbjct: 84 MDVRAPPAVMAA----VDQALKEFGRIDILINCAAG----NFLCPAGALSFNAFKTVMDI 135
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ + +++ + + IVN+++ +G+ Q +K
Sbjct: 136 DTSGTFNVSRVLYEKFFRDH-----------GGVIVNITATLGN---RGQALQVHAGSAK 181
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDMG 209
AA++A TR L+++ I ++ PG + G
Sbjct: 182 AAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEG 215
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 68.0 bits (167), Expect = 9e-14
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 38/220 (17%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--------LAQQHS 53
L+TG G+G + L G G A + A ++ A E +
Sbjct: 8 ALALVTGAGSGIGRAVSVRLAGEG----ATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 54 NLHVIELDVTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLGLL---KPEQ 108
N + DV++ + + + V +V+V+ AGI T+ L +
Sbjct: 64 NHAAFQADVSEARAARCL----LEQVQACFSRPPSVVVSCAGI----TQDEFLLHMSEDD 115
Query: 109 MTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGF 168
VN+ ++T+ L GS I+N+SSI+G + + Q
Sbjct: 116 WDKVIAVNLKGTFLVTQAAAQALVS------NGCRGS----IINISSIVGKVGNVGQTN- 164
Query: 169 HPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
Y SKA + T++ + +L I ++ PG++ T M
Sbjct: 165 --YAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPM 202
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 67.5 bits (166), Expect = 9e-14
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 32/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA-LAQQHSNLHVIEL 60
K+ ++TG +RGLG + L +G N + N+ V +
Sbjct: 6 KTAIVTGSSRGLGKAIAWKLGNMGAN---IVLNGSPASTSLDATAEEFKAAGINVVVAKG 62
Query: 61 DVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
DV + +++ + + G +++LVNNAGI TR L+ + D N
Sbjct: 63 DVKNPEDVENM----VKTAMDAFGRIDILVNNAGI----TRDTLMLKMSEKDWDDVLNTN 114
Query: 117 VTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ + + TK + +LK+ S G I+N++SI G I + Q Y SK
Sbjct: 115 LKSAYLCTKAVSKIMLKQKS--------GK----IINITSIAGIIGNAGQAN---YAASK 159
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A L T+S++ + I A+ PG +KTDM
Sbjct: 160 AGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDM 192
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 67.5 bits (166), Expect = 9e-14
Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 31/211 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K+ L+TG +G+G + L G A + + N + A A A I D
Sbjct: 7 KTALVTGAAQGIGKAIAARLAADG----ATVIVSDINAEGAKA--AAASIGKKARAIAAD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
++D + + +++ G +++LVNNA I + VN+
Sbjct: 61 ISDPGSVKAL----FAEIQALTGGIDILVNNASI----VPFVAWDDVDLDHWRKIIDVNL 112
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
T ++T+ ++ A +A G +++++S Y +K
Sbjct: 113 TGTFIVTRAGTDQMRAAGKA------GR----VISIASNTFFAGTPNMAA---YVAAKGG 159
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+ TR+L+ +L I A A+ PG +++D
Sbjct: 160 VIGFTRALATELGKYNITANAVTPGLIESDG 190
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 68.1 bits (167), Expect = 1e-13
Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 46/254 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCR-NKDKAVELLA--LAQQHSNLHVI 58
L+TG + LG + + L G + + +A L A A++ ++ +
Sbjct: 10 PVALVTGAAKRLGRSIAEGLHAEG----YAVCLHYHRSAAEANALSATLNARRPNSAITV 65
Query: 59 ELDVTDFSKQQDVLFKD-------------ISDVVKDQG-LNVLVNNAGIAAKFTRLGLL 104
+ D+++ + ++ G +VLVNNA T L
Sbjct: 66 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASS-FYPTPLLRN 124
Query: 105 KPEQ--------------MTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAI 150
+ D F N AP L K + + + +I
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRG-----TNYSI 179
Query: 151 VNVSSIMGSIEDNTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGG 210
+N+ M + G+ Y +K AL TRS +++L +I + PG + +
Sbjct: 180 INMVDAMTNQ---PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL--SVLVD 234
Query: 211 SNAPLEVGAATAGI 224
P + +
Sbjct: 235 DMPPAVWEGHRSKV 248
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 67.7 bits (166), Expect = 1e-13
Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 26/239 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
S +++G GLG ++ L G + +K L + + + +
Sbjct: 31 ASAIVSGGAGGLGEATVRRLHADG----LGVVIADLAAEKGKALAD--ELGNRAEFVSTN 84
Query: 62 VTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLGLLKPEQMTDHFL----V 115
VT + + G +V + G + F +
Sbjct: 85 VTSEDSVLAAI-----EAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ + + + + A R A+V +SI G Q G Y +K
Sbjct: 140 YLNGTYNVARLVAASIAAA-----EPRENGERGALVLTASIAGY---EGQIGQTAYAAAK 191
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
A + T + + DL I + PG +KT + S E A A I F + LG
Sbjct: 192 AGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES-VGEEALAKFAANIPFPKRLGTP 249
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 67.2 bits (165), Expect = 2e-13
Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 32/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATC-RNKDKAVELLALAQQH-SNLHVIE 59
+ +TG GLG + + L G + + D L + +
Sbjct: 26 RVAFVTGGMGGLGAAISRRLHDAG----MAVAVSHSERNDHVSTWLMHERDAGRDFKAYA 81
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+DV DF + V+ D G ++VL+NNAGI TR
Sbjct: 82 VDVADFESCERC----AEKVLADFGKVDVLINNAGI----TRDATFMKMTKGDWDAVMRT 133
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
++ A +TK + + + R IVN+ S+ GS Q Y +K
Sbjct: 134 DLDAMFNVTKQFIAGMVER---------RFGR--IVNIGSVNGSRGAFGQAN---YASAK 179
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A ++ T++L+++ I + PG++ T M
Sbjct: 180 AGIHGFTKTLALETAKRGITVNTVSPGYLATAM 212
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 67.5 bits (165), Expect = 2e-13
Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 46/238 (19%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCR-NKDKAVELLA--LAQQHSNLHVI 58
L+TG + LG + + L G + + +A L A A++ ++ +
Sbjct: 47 PVALVTGAAKRLGRSIAEGLHAEG----YAVCLHYHRSAAEANALSATLNARRPNSAITV 102
Query: 59 ELDVTDFSKQQDVLFKD-------------ISDVVKDQG-LNVLVNNAGIAAKFTRLGLL 104
+ D+++ + ++ G +VLVNNA T L
Sbjct: 103 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASS-FYPTPLLRN 161
Query: 105 KPEQ--------------MTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAI 150
+ D F N AP L K + + + +I
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRG-----TNYSI 216
Query: 151 VNVSSIMGSIEDNTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+N+ M + G+ Y +K AL TRS +++L +I + PG + +
Sbjct: 217 INMVDAMTNQ---PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL--SVL 269
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 66.4 bits (163), Expect = 3e-13
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCR-NKDKAVELLALAQQH-SNLHVIE 59
+ +TG G+G + + L G + A C N + V+ L + + + E
Sbjct: 14 RIAYVTGGMGGIGTSICQRLHKDG----FRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLV 115
+V D+ + V + G ++VLVNNAGI TR + E
Sbjct: 70 GNVGDWDSTKQA----FDKVKAEVGEIDVLVNNAGI----TRDVVFRKMTREDWQAVIDT 121
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N+T+ +TK ++ + + G R I+N+SS+ G Q Y +K
Sbjct: 122 NLTSLFNVTKQVIDGMVER---------GWGR--IINISSVNGQKGQFGQTN---YSTAK 167
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A ++ T SL+ ++ + + PG++ TDM
Sbjct: 168 AGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDM 200
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 66.1 bits (162), Expect = 4e-13
Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 23/237 (9%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ ++TG + GLG + ++L G A + E A + + + D
Sbjct: 8 RVFIVTGASSGLGAAVTRMLAQEG----ATVLGLDLKPPAGEEPAA--ELGAAVRFRNAD 61
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAK---FTRLGLLKPEQMTDHFLVNV 117
VT+ + ++ ++ G ++ LVN AG A R G + VN+
Sbjct: 62 VTNEADATAA----LAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNL 117
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ + ++ + R IVN +SI + Q G Y SK
Sbjct: 118 IGTFNMIRLAAEVM-----SQGEPDADGERGVIVNTASIAAF---DGQIGQAAYAASKGG 169
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
+ A T + +L I + PG T M P +V A A + F LG A
Sbjct: 170 VAALTLPAARELARFGIRVVTIAPGIFDTPMMAG-MPQDVQDALAASVPFPPRLGRA 225
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 65.7 bits (161), Expect = 6e-13
Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 25/237 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
++TG GLGL K L+ G A + + V L D
Sbjct: 10 AVAVVTGGASGLGLATTKRLLDAG----AQVVVLDIRGEDVVADLG-----DRARFAAAD 60
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAK---FTRLGLLKPEQMTDHFLVNV 117
VTD + L D+ + G L ++VN AG +R G+ +N+
Sbjct: 61 VTDEAAVASAL-----DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINL 115
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ + + ++ P R I+N +S+ + Q G Y SK
Sbjct: 116 VGSFNVLRLAAERI---AKTEPVGPNAEERGVIINTASVAAF---DGQIGQAAYSASKGG 169
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
+ T ++ DL +I + PG T + S P E A+ + LG
Sbjct: 170 VVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS-LPEEARASLGKQVPHPSRLGNP 225
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 65.0 bits (159), Expect = 1e-12
Identities = 55/239 (23%), Positives = 82/239 (34%), Gaps = 25/239 (10%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+ITG GLGL + LVG G A + +N D
Sbjct: 13 LVAVITGGASGLGLATAERLVGQG----ASAVLLDLPNSGGEAQAK--KLGNNCVFAPAD 66
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKPEQMT-DHFL----V 115
VT Q ++ G ++V VN AGIA L K + T + F V
Sbjct: 67 VTSEKDVQTA----LALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDV 122
Query: 116 NVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
N+ + + + + + G R I+N +S+ Q G Y SK
Sbjct: 123 NLMGTFNVIRLVAGEMGQN-----EPDQGGQRGVIINTASVAAF---EGQVGQAAYSASK 174
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
+ T ++ DL I + PG T + S P +V A + F LG+
Sbjct: 175 GGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS-LPEKVCNFLASQVPFPSRLGDP 232
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 65.0 bits (159), Expect = 2e-12
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 34/217 (15%)
Query: 5 LITGCNRGLGLGMIKVLVGLG--------NNQPAHIFATCRNKDKAVELLALAQQH-SNL 55
ITG RG G L G Q ++ + ++ E + L ++ +
Sbjct: 50 FITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRI 109
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTD 111
+ DV D + Q V + + + + G +++LV+N GI + G + +Q +D
Sbjct: 110 IARQADVRDLASLQAV----VDEALAEFGHIDILVSNVGI----SNQGEVVSLTDQQWSD 161
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
N+ + +LP + + + GS ++ VSS +G G Y
Sbjct: 162 ILQTNLIGAWHACRAVLPSMIERGQG------GS----VIFVSSTVGLR---GAPGQSHY 208
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
SK + SL+ ++ I +++PG V T+M
Sbjct: 209 AASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM 245
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 63.8 bits (156), Expect = 2e-12
Identities = 53/237 (22%), Positives = 84/237 (35%), Gaps = 33/237 (13%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+S L+TG GLG L G V +L L ++ +L +E D
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYR---------------VVVLDLRREGEDLIYVEGD 47
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLLKP---EQMTDHFLVNV 117
VT + + +++ L +V+ AG+ LG P E VN+
Sbjct: 48 VTREEDVRRAV-----ARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNL 102
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSKAA 177
+ + +++ N G R IVN +S+ Q G Y SK
Sbjct: 103 LGTFNVLRLAAWAMRE----NPPDAEGQ-RGVIVNTASVAAF---EGQIGQAAYAASKGG 154
Query: 178 LNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGSNAPLEVGAATAGIIQFIQSLGEA 234
+ A T + +L G I + PG T + P + A+ A + F LG
Sbjct: 155 VVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG-LPEKAKASLAAQVPFPPRLGRP 210
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 64.1 bits (157), Expect = 3e-12
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 26/157 (16%)
Query: 56 HVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTD 111
++DV D + + +++ G +++ + NAGI + + LL + Q +
Sbjct: 74 ISAKVDVKDRAALESF----VAEAEDTLGGIDIAITNAGI----STIALLPEVESAQWDE 125
Query: 112 HFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPY 171
N+T + P + K R IV VSS++G Y
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKR---------NYGR--IVTVSSMLGHS---ANFAQASY 171
Query: 172 RCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
SK + T+ + DL G I A+ PG ++T M
Sbjct: 172 VSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPM 208
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 63.3 bits (155), Expect = 3e-12
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 39/213 (18%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K++LITG G+G +++ G A + A + E H + +D
Sbjct: 6 KAVLITGAAHGIGRATLELFAKEG----ARLVACDIEEGPLREAAEAVGAH----PVVMD 57
Query: 62 VTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNV 117
V D + + ++ + G L+ +V+ AGI TR E VN+
Sbjct: 58 VADPASVERG----FAEALAHLGRLDGVVHYAGI----TRDNFHWKMPLEDWELVLRVNL 109
Query: 118 TAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSI--MGSIEDNTQGGFHPYRCSK 175
T ++ K +++ IV +S +G++ G Y S
Sbjct: 110 TGSFLVAKAASEAMREK---------NPGS--IVLTASRVYLGNL------GQANYAASM 152
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + TR+L+++L I + PG+++T M
Sbjct: 153 AGVVGLTRTLALELGRWGIRVNTLAPGFIETRM 185
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 63.5 bits (155), Expect = 7e-12
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 35/213 (16%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++TG RG+G + +V G A + A + D A E L + LD
Sbjct: 214 KVAVVTGAARGIGATIAEVFARDG----ATVVAI--DVDGAAEDLKRVADKVGGTALTLD 267
Query: 62 VTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVN 116
VT + + V + G +++LVNNAGI TR LL ++ VN
Sbjct: 268 VTADDAVDKI----TAHVTEHHGGKVDILVNNAGI----TRDKLLANMDEKRWDAVIAVN 319
Query: 117 VTAPLMLTKTML-PLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYRCSK 175
+ AP LT+ ++ G ++ +SS+ G + Q Y +K
Sbjct: 320 LLAPQRLTEGLVGNGTIGEG--------GR----VIGLSSMAGIAGNRGQTN---YATTK 364
Query: 176 AALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
A + +L+ L I A+ PG+++T M
Sbjct: 365 AGMIGLAEALAPVLADKGITINAVAPGFIETKM 397
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 61.0 bits (149), Expect = 3e-11
Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA--LAQQHSNLHVI 58
++ LIT +GLG + + L+ G + T + A+E + L +
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKG----YSVTVTYHSDTTAMETMKETYKDVEERLQFV 62
Query: 59 ELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL---KPEQMTDHFL 114
+ DVT + + + + G ++ L+NNAG L + ++ +
Sbjct: 63 QADVTKKEDLHKI----VEEAMSHFGKIDFLINNAG--PYVFERKKLVDYEEDEWNEMIQ 116
Query: 115 VNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVS--SIMGSIEDNTQGGFHPYR 172
N+TA L K ++P+++K R I+N + + +
Sbjct: 117 GNLTAVFHLLKLVVPVMRKQ---------NFGR--IINYGFQGADSAPGWIYRSA---FA 162
Query: 173 CSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
+K L + T++++ + I A + PG + +M
Sbjct: 163 AAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEM 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 5e-06
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 50 QQHSNLHVIELDVTDFSKQQDVLFKDISD----VVKDQGLNVLVNNAGIAAKFTRL-GLL 104
Q+ ++ + F D KD+ D ++ + ++ ++ + + RL L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 105 --KPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIED 162
K E+M F+ V L + P +R I + D
Sbjct: 72 LSKQEEMVQKFVEEVLRI------NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---D 122
Query: 163 NTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDMGGS 211
N F Y S+ R ++L+ K + + G + GS
Sbjct: 123 NQV--FAKYNVSRLQPYLKLRQALLELRPAKNV--LID-G-----VLGS 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 62/221 (28%)
Query: 61 DVTDFSKQQDVLFKD-----ISDVVKDQGLNVLVNNAGIAAKFTRLGLLKP--EQMTDHF 113
DV + + D FKD I D+V + +N+ ++ G K R E + D
Sbjct: 1644 DVWN---RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 114 LVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRA----------AIVNVS-SIMGSIED 162
L + K+ +E +++ S + A+ + + ++
Sbjct: 1701 LK-----------TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 163 NTQGGF--------HP---YRCSKAALNAATRSLSID--LK-----GDKIIATAMHPGWV 204
+G H Y AAL + +SI+ ++ G + A+ +
Sbjct: 1750 --KGLIPADATFAGHSLGEY----AALASLADVMSIESLVEVVFYRG-MTMQVAVPRDEL 1802
Query: 205 KTDMGGSNA--PLEVGA--ATAGIIQFIQSLGEAHNGGFFE 241
G A P V A + + ++ +G+ G E
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKR-TGWLVE 1842
Score = 34.3 bits (78), Expect = 0.043
Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 134/293 (45%)
Query: 21 LVGLGNNQPAHIFATCR----------------------------------------NKD 40
L+G+ Q AH T + +
Sbjct: 240 LIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 41 KAVELLAL----AQQ---HSNLH--VIE-------------LDVTDFSKQQDVLFKDISD 78
KA+ +L + +++L ++E L +++ +++Q + ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNK 355
Query: 79 VVK----DQGLNV-LVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAP---LMLTKTMLPL 130
+ + + LVN A + V V+ P L L
Sbjct: 356 TNSHLPAGKQVEISLVNGA------------------KNL-V-VSGPPQSLYGLNLTLRK 395
Query: 131 LKKASEAN-SAAPLGSSRAAIVN-----VSSIMGSIEDNTQGGFH-PYRCSKAALNAATR 183
K S + S P S R + V+S FH L A+
Sbjct: 396 AKAPSGLDQSRIPF-SERKLKFSNRFLPVAS-----------PFHSHL------LVPASD 437
Query: 184 SLSIDLKGDKIIATAMHPGWVKTDMG--------GSNAPLEVGAATAGIIQFI 228
++ DL + + + D+ GS+ + G+ + I+ I
Sbjct: 438 LINKDLVKNNVS-------FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Score = 32.3 bits (73), Expect = 0.14
Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 30/147 (20%)
Query: 107 EQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMG----SIED 162
Q+ + F + P T+ E + A L V +G +E
Sbjct: 31 SQLQEQFNKILPEP---TEG----FAADDEPTTPAEL---------VGKFLGYVSSLVEP 74
Query: 163 NTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMH-PGWVKTDMGGSNAPLEVGAAT 221
+ G F L L+G+ I A A T + + ++
Sbjct: 75 SKVGQFDQ--VLNLCLTEFENCY---LEGNDIHALAAKLLQENDTTLVKTKELIK--NYI 127
Query: 222 AGIIQFIQSLGEAHNGGFFE--YTGKA 246
I + + N F G A
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNA 154
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 39.9 bits (93), Expect = 3e-04
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 19/120 (15%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
K ++ +G+ +L G G A + R DKA + ++V +
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEG----AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE 175
Query: 62 VTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPL 121
D + + + + +G + + I L LL + + + A
Sbjct: 176 TADDASRAEAV----------KGAHFVFTAGAIG-----LELLPQAAWQNESSIEIVADY 220
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 35.8 bits (83), Expect = 0.008
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 24/141 (17%)
Query: 84 GLNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAA 141
++V+VNNAGI F+R + E V++ +T+ +KK
Sbjct: 92 RIDVVVNNAGILRDRSFSR---ISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ------- 141
Query: 142 PLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRCSKAALNAATRSLSIDLKGDKIIATAM 199
+ I+ +S G G F Y +K L +L I+ + + I +
Sbjct: 142 ----NYGRIIMTASASG-----IYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTI 192
Query: 200 HPGWVKTDMGGSNAPLEVGAA 220
P + M + P ++ A
Sbjct: 193 APN-AGSRMTETVMPEDLVEA 212
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 36.2 bits (84), Expect = 0.008
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 28/131 (21%)
Query: 84 GLNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSA 140
+++LVNNAGI R ++ V++ L++ P +
Sbjct: 395 TIDILVNNAGI----LRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEK------ 444
Query: 141 APLGSSRAAIVNVSS---IMGSIEDNTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIAT 197
R I+N++S I G+ G Y SKA + +++++I+ + I
Sbjct: 445 ---QFGR--IINITSTSGIYGNF------GQANYSSSKAGILGLSKTMAIEGAKNNIKVN 493
Query: 198 AMHPGWVKTDM 208
+ P +T M
Sbjct: 494 IVAPH-AETAM 503
Score = 35.4 bits (82), Expect = 0.013
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 28/143 (19%)
Query: 84 GLNVLVNNAGIAAKFTRLGLL---KPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSA 140
++V++NNAGI R + + V++ +TK P +K
Sbjct: 91 TVHVIINNAGI----LRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQ------ 140
Query: 141 APLGSSRAAIVNVSS---IMGSIEDNTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIAT 197
IVN SS + G+ G Y +K+AL +L+ + I A
Sbjct: 141 -----KYGRIVNTSSPAGLYGNF------GQANYASAKSALLGFAETLAKEGAKYNIKAN 189
Query: 198 AMHPGWVKTDMGGSNAPLEVGAA 220
A+ P ++ M S P +
Sbjct: 190 AIAPL-ARSRMTESIMPPPMLEK 211
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 35.5 bits (82), Expect = 0.009
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
MK++LI G + +I L + Q R K + +N +I
Sbjct: 23 MKNVLILGAGGQIARHVINQLA---DKQTIKQTLFARQPAKIHKPY-----PTNSQIIMG 74
Query: 61 DVTD 64
DV +
Sbjct: 75 DVLN 78
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 35.4 bits (82), Expect = 0.011
Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 44/226 (19%)
Query: 2 KSILITGCNRGLG----LGM----IKVLVG-LGNNQPAHIFATCRNKDKAVELL------ 46
+ +++TG G+G L +V+V +G + V+ +
Sbjct: 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGE 87
Query: 47 ALAQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG-LNVLVNNAGIAAKFTRLGLL- 104
A+A +V D+ + + I V+ G L+VLVNNAGI R ++
Sbjct: 88 AVADGS--------NVADWDQAAGL----IQTAVETFGGLDVLVNNAGI----VRDRMIA 131
Query: 105 --KPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIED 162
E+ V++ + + S+A A I+N SS G
Sbjct: 132 NTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAV-----DGRIINTSSGAGLQGS 186
Query: 163 NTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKTDM 208
QG Y +KA + T + ++ + A+ P +T M
Sbjct: 187 VGQGN---YSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRM 228
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 35.7 bits (81), Expect = 0.011
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 1 MKSILITGCNRGLGLGMI-KVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIE 59
KS+L+ LG G + + + + + + CR + A +L + + I
Sbjct: 3 TKSVLM------LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL---SAGVQHSTPIS 53
Query: 60 LDVTDFSKQQDVLFKDISDVV 80
LDV D + + K D+V
Sbjct: 54 LDVNDDAALDAEVAK--HDLV 72
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 35.7 bits (81), Expect = 0.014
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 30/146 (20%)
Query: 53 SNLHVIELDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDH 112
+ V EL SK +F+ D+ Q +L + + TR ++ ++
Sbjct: 175 RMVQVHELGCEGISKS--YVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNR 232
Query: 113 FLVNVTAPLMLTKTMLPLLKKASEANSAAPLGSSRAAIVNVSSIMGSIEDNTQGGFHPYR 172
FL P+ + ++ + G P R
Sbjct: 233 FLQ--------------------------PVQKIDMNLTDLLGELQRDPWPVPQGKRPLR 266
Query: 173 CSKAALNAATRSLSIDLK--GDKIIA 196
S AL+ A L G +I+
Sbjct: 267 SSGVALSIAVGLLECTFPNTGARIMM 292
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 34.3 bits (79), Expect = 0.026
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 1 MKSILITGCNRG-LGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIE 59
+ ILI GC G LGL + + L G + R+ + +
Sbjct: 3 LSKILIAGC--GDLGLELARRLTAQG----HEVTGLRRSAQPMPA---------GVQTLI 47
Query: 60 LDVTDFSKQQDVLFKDISDVV 80
DVT ++ +++
Sbjct: 48 ADVTRPDTLASIVHLR-PEIL 67
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 33.7 bits (77), Expect = 0.043
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
+ ++L+TG + G + K L R+ ++ A V
Sbjct: 4 LPTVLVTGASGRTGQIVYKKLKEGS--DKFVAKGLVRSAQGKEKIGGEAD------VFIG 55
Query: 61 DVTD 64
D+TD
Sbjct: 56 DITD 59
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 33.0 bits (76), Expect = 0.072
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 15 LGMIKVLVGLGNNQPAHIFATCRNKDKAV---ELLALAQQHSNLHVI 58
+ M++ + I+ + + EL +L + NL V
Sbjct: 133 VSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVK 179
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 33.3 bits (75), Expect = 0.074
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 1 MKSILITGCNRGL-GLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIE 59
K++L+ G G +I L + ++ CR A L + S I
Sbjct: 23 GKNVLLLGS--GFVAQPVIDTLAANDDI---NVTVACRTLANAQAL----AKPSGSKAIS 73
Query: 60 LDVTDFSKQQDVLFKDISDVV 80
LDVTD S VL +DVV
Sbjct: 74 LDVTDDSALDKVLAD--NDVV 92
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 32.7 bits (75), Expect = 0.079
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 4 ILITGCNRGLGL----GMIKVLVGLGNNQPAHIFATCRNKDKAV---ELLALAQQHSNLH 56
+++ G G G+ M++VL G+ P + V +L AL Q+
Sbjct: 214 LMLAG---GTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFE 270
Query: 57 VI 58
Sbjct: 271 YR 272
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 32.2 bits (74), Expect = 0.13
Identities = 29/224 (12%), Positives = 78/224 (34%), Gaps = 54/224 (24%)
Query: 2 KSILITGC--NRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIE 59
K IL++G + + + +V G A + T ++ + ++ + + + ++E
Sbjct: 8 KRILVSGIITDSSIAFHIARVAQEQG----AQLVLTGFDRLRLIQRIT-DRLPAKAPLLE 62
Query: 60 LDVTDFSKQQDVLFKDISDVVKD-QGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVT 118
LDV + + L +++ + L+ +V++ G + M + +
Sbjct: 63 LDVQN-EEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQ---------TGMGINPFFDAP 112
Query: 119 APLMLTKTM------LPLLKKASEANSAAPLGSSRAAIVNVS----------SIMGSIED 162
+ + + KA P+ + +IV + + M
Sbjct: 113 YADVSK-GIHISAYSYASMAKA-----LLPIMNPGGSIVGMDFDPSRAMPAYNWMT---- 162
Query: 163 NTQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKT 206
+K+AL + R ++ + + + + G ++T
Sbjct: 163 ----------VAKSALESVNRFVAREAGKYGVRSNLVAAGPIRT 196
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 31.8 bits (73), Expect = 0.15
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 34/121 (28%)
Query: 1 MKSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIEL 60
M+ LITG + LG+ + ++L E++ + +L
Sbjct: 1 MR-TLITGASGQLGIELSRLLSERH------------------EVIKVYNSSEIQGGYKL 41
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDH-FLVNVTA 119
D+TD F + D + + +V++N AA T + K E + + +N A
Sbjct: 42 DLTD--------FPRLEDFIIKKRPDVIIN----AAAMTDVD--KCEIEKEKAYKINAEA 87
Query: 120 P 120
Sbjct: 88 V 88
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 32.1 bits (73), Expect = 0.15
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 23/123 (18%)
Query: 84 GLNVLVNNAGIA--AKFTRLGLLKPEQMTDHFLVNVTAPLMLTKTMLPLLKKASEANSAA 141
+++LVNNAGI + + V++ T+ P +KK
Sbjct: 102 RVDILVNNAGILRDRSLVK---TSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ------- 151
Query: 142 PLGSSRAAIVNVSSIMGSIEDNTQGGFH--PYRCSKAALNAATRSLSIDLKGDKIIATAM 199
+ I+ SS G G F Y +K L +++I+ + ++ +
Sbjct: 152 ----NYGRIIMTSSNSG-----IYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVI 202
Query: 200 HPG 202
P
Sbjct: 203 VPT 205
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 31.4 bits (71), Expect = 0.27
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
+++ T LG + ++ + G + R +++A L + +HV
Sbjct: 173 SALVHTAAASNLGQMLNQICLKDG----IKLVNIVRKQEQA----DLLKAQGAVHVCNAA 224
Query: 62 VTDFSKQ 68
F +
Sbjct: 225 SPTFMQD 231
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 31.0 bits (70), Expect = 0.28
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 2 KSILITGCNRG-LGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLAL 48
++L G G + + L G I T RN D+ + A
Sbjct: 6 GTLLSFGH--GYTARVLSRALAPQG----WRIIGTSRNPDQMEAIRAS 47
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 31.0 bits (71), Expect = 0.29
Identities = 63/259 (24%), Positives = 92/259 (35%), Gaps = 73/259 (28%)
Query: 2 KSILITGC--NRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIE 59
K IL+TG NR + G+ K G A + T + A + + V
Sbjct: 15 KRILLTGLLSNRSIAYGIAKACKREG----AELAFTYVGDRFKDRITEFAAEFGSELVFP 70
Query: 60 LDVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTA 119
DV D Q D LF + L+ LV++ G A + E + FL +T
Sbjct: 71 CDVAD-DAQIDALFASLKTHWD--SLDGLVHSIGFAPR---------EAIAGDFLDGLTR 118
Query: 120 P-------------LMLTKTMLPLLKKASEANSAAPLGSSRAAIV---NVSSIMGSIEDN 163
L K LP+L + + + LG+ RA + N MG
Sbjct: 119 ENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA--IPNYNT---MG----- 168
Query: 164 TQGGFHPYRCSKAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGG 210
+KAAL A+ R L++ L + A+ G +KT D
Sbjct: 169 ---------LAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVE 219
Query: 211 SNAPL-------EVGAATA 222
SN+PL +VG A A
Sbjct: 220 SNSPLKRNVTIEQVGNAGA 238
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 31.0 bits (71), Expect = 0.30
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 15 LGMIKVLVGLGNNQPAHIFATCRNKDKAV---ELLALAQQHSNLHVI 58
++ + N+ I+ R + EL AL+ +H L V+
Sbjct: 118 RSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVV 164
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 30.4 bits (69), Expect = 0.44
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 26/95 (27%)
Query: 4 ILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLA---LAQQHSNLHVIEL 60
IL+TG G I G + K ++A + + + I L
Sbjct: 2 ILVTG-----SSGQI------G----TELVPYLAEKYGKKNVIASDIVQRDTGGIKFITL 46
Query: 61 DVTDFSKQQDVLFKDISDVVKDQGLNVLVNNAGIA 95
DV++ +I V+ ++ + + AGI
Sbjct: 47 DVSN--------RDEIDRAVEKYSIDAIFHLAGIL 73
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 30.2 bits (69), Expect = 0.47
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KAAL A+ R L+ +L + A+ G V+T D APL
Sbjct: 164 KAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQ 223
Query: 216 -EVGAATA 222
EVG
Sbjct: 224 EEVGNLGL 231
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 30.2 bits (69), Expect = 0.49
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KA+L A R ++ + + + A+ G ++T + P+
Sbjct: 166 KASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTI 225
Query: 216 -EVGAATA 222
+VG + A
Sbjct: 226 EDVGNSAA 233
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 30.2 bits (69), Expect = 0.50
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KAAL +A R L++DL I A+ G ++T NAPL
Sbjct: 162 KAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSL 221
Query: 216 -EVGAATA 222
EVG A
Sbjct: 222 EEVGNAGM 229
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 30.3 bits (69), Expect = 0.51
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KA+L A + L++DL D I A+ G ++T APL
Sbjct: 190 KASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQ 249
Query: 216 -EVGAATA 222
EVG A
Sbjct: 250 VEVGKTAA 257
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 30.2 bits (69), Expect = 0.51
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KA+L+A+ + L+ DL + I ++ G ++T APL
Sbjct: 165 KASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTP 224
Query: 216 -EVGAATA 222
EVG A
Sbjct: 225 EEVGDTAA 232
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 30.3 bits (69), Expect = 0.58
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KAAL + R L+ D+ A+ G VKT + P
Sbjct: 178 KAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITI 237
Query: 216 -EVGAATA 222
+VG
Sbjct: 238 EDVGDTAV 245
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 29.9 bits (68), Expect = 0.66
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KAAL A+ + L++DL +I A+ G V+T N+PL
Sbjct: 186 KAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTL 245
Query: 216 -EVGAATA 222
+VG A
Sbjct: 246 DDVGGAAL 253
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 29.9 bits (68), Expect = 0.66
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KAAL A+ + L++DL I A+ G +KT NAPL
Sbjct: 187 KAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTI 246
Query: 216 -EVGAATA 222
EVG
Sbjct: 247 DEVGDVGL 254
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 29.9 bits (68), Expect = 0.72
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 20/68 (29%)
Query: 175 KAALNAATRSLSIDLKGDKIIATAMHPGWVKT-------------DMGGSNAPL------ 215
KA+L A R ++ L D I A+ G +KT D +PL
Sbjct: 183 KASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDI 242
Query: 216 -EVGAATA 222
EVG A
Sbjct: 243 MEVGNTVA 250
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 29.7 bits (66), Expect = 0.75
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 25 GNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG 84
GN + L + +HS + +E + + +F D++ +V+ QG
Sbjct: 172 GNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHD----MFMDMAMLVESQG 227
Query: 85 --LNVLVNNAGIAAKFTRLG 102
++ + N A +
Sbjct: 228 EMIDRIEYNVEHAVDYVERA 247
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 27.2 bits (61), Expect = 1.3
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 49 AQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLG 102
+ + + + +E D+ D ++ +FKD++ ++ DQG ++ + N +
Sbjct: 2 SMRETAIQQLEADILDVNQ----IFKDLAMMIHDQGDLIDSIEANVESSEVHVERA 53
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 28.7 bits (65), Expect = 1.8
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 3 SILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELDV 62
+L+ C +G ++ L + A RN + +VI+
Sbjct: 147 VLLVNACGSAIGHLFAQLSQILN----FRLIAVTRNNKHT----EELLRLGAAYVIDTST 198
Query: 63 TDFSKQ 68
+
Sbjct: 199 APLYET 204
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 28.4 bits (64), Expect = 2.1
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 2 KSILITGCNRGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLAL-AQQHSNLHVIEL 60
K+ ++T L +I + G T R ++ L + A HV+
Sbjct: 166 KAFVMTAGASQLCKLIIGLAKEEG----FRPIVTVRRDEQIALLKDIGAA-----HVLNE 216
Query: 61 DVTDFSKQ 68
DF
Sbjct: 217 KAPDFEAT 224
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 28.6 bits (63), Expect = 2.3
Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 11 RGLGLGMIKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSN-LHVIELDVTDFSKQQ 69
+G+G+ + + + I + A + +N ++ +V D+ +
Sbjct: 113 QGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPH 172
Query: 70 ----DVLFKDISDVVKDQGLNVLVNNAGIAAKFTRLGLLKPEQMTDHFLVNVTAPLMLTK 125
++ + + Q + + I R+ L+ P+ + F +
Sbjct: 173 GTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGNEEVFERATDKMPEPAE 232
Query: 126 TMLP 129
+LP
Sbjct: 233 EILP 236
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 28.4 bits (64), Expect = 2.5
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 1 MKSILITG---------CNRGLGLGMIKVLVGLGNNQPAHIFATCRNKD-KAVELLALAQ 50
K LITG L L KV VGL N FAT ++ V L +
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLD-QKV-VGLDN------FATGHQRNLDEVRSLVSEK 78
Query: 51 QHSNLHVIELDVTDFSKQQDVLFKDISDVV 80
Q SN I+ D+ + + + D V
Sbjct: 79 QWSNFKFIQGDIRNLDDCNN-ACAGV-DYV 106
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 27.9 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 20 VLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELD 61
VL L + QPA I T R KA +L L + + +
Sbjct: 141 VLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE 182
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 27.8 bits (61), Expect = 3.2
Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 24 LGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQ 83
+ + IF+ R + +L + +H ++ +E + + + +F D+S +V Q
Sbjct: 188 VIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHE----MFTDMSTLVASQ 243
Query: 84 G--LNVLVNNAGIAAKFTRLG 102
G ++ + + + + +
Sbjct: 244 GEMIDRIEFSVEQSHNYVKKA 264
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A
{Bacteroides fragilis}
Length = 397
Score = 27.6 bits (60), Expect = 3.7
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 18 IKVLVGLGNNQPAHIFATCRNKDKAVELLALAQQHSNLHVIELDVTDFSKQQDVLFKDIS 77
+K+L+ LG A + A C N+ ++ A +++ + + TD + Q D+S
Sbjct: 4 VKLLLMLGT---AALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQ----LNDVS 56
Query: 78 D-----VVKDQGLNVLVNNAGIAAKFTRLG 102
D ++KD G N V+ + +L
Sbjct: 57 DFGKMIILKDNGFNRQVHVSMDKRTKIQLD 86
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 25.3 bits (56), Expect = 5.8
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 45 LLALAQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLG 102
L + +HS + +E + + +F D++ +V+ QG ++ + N A +
Sbjct: 2 LSEIETRHSEIIKLENSIRELHD----MFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 57
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 26.6 bits (59), Expect = 7.9
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 21/69 (30%)
Query: 175 KAALNAATRSLSIDL-KGDKIIATAMHPGWVKT-------------DMGGSNAPL----- 215
KAAL + TR L+ + + I + G + + + +NAP+
Sbjct: 196 KAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLT 255
Query: 216 --EVGAATA 222
EVG A A
Sbjct: 256 ADEVGNAAA 264
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 24.9 bits (55), Expect = 8.2
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 48 LAQQHSNLHVIELDVTDFSKQQDVLFKDISDVVKDQG--LNVLVNNAGIAAKFTRLG 102
+ ++ S++ +E D+ D ++ +FKD+ ++ +QG ++ + N A +
Sbjct: 4 MHERESSIRQLEADIMDINE----IFKDLGMMIHEQGDVIDSIEANVESAEVHVQQA 56
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal
domain, INT aldimine form, isomerase; HET: PLP; 1.90A
{Mycobacterium tuberculosis}
Length = 384
Score = 26.7 bits (60), Expect = 8.5
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 15/69 (21%)
Query: 40 DKAVELLALAQQHSNLHVI----------ELDVTDFSKQQDVLFKDISDVVKDQGLNVLV 89
+ L A + + + D + Q F ++QG+ V
Sbjct: 149 PAMLTALRQAMAEDAVRLRGLMSHMVYADKPD-DSINDVQAQRFTAFLAQAREQGVRFEV 207
Query: 90 ----NNAGI 94
N++
Sbjct: 208 AHLSNSSAT 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,555,823
Number of extensions: 206504
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 245
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)