Query psy11192
Match_columns 180
No_of_seqs 177 out of 1089
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:31:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03121 alpha_CARP_X_XI_like C 100.0 1.9E-53 4.2E-58 348.2 19.5 169 7-177 1-172 (256)
2 cd03119 alpha_CA_I_II_III_XIII 100.0 8.5E-51 1.8E-55 333.2 19.5 168 2-176 7-175 (259)
3 cd03122 alpha_CARP_receptor_li 100.0 3.3E-49 7.3E-54 322.7 20.0 166 7-177 1-169 (253)
4 cd03150 alpha_CA_IX Carbonic a 100.0 1.4E-48 3.1E-53 317.9 17.4 161 7-177 1-165 (247)
5 PF00194 Carb_anhydrase: Eukar 100.0 1.6E-48 3.5E-53 319.2 16.6 170 2-177 3-173 (256)
6 cd03126 alpha_CA_XII_XIV Carbo 100.0 5.2E-48 1.1E-52 315.0 18.7 160 7-177 1-165 (249)
7 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 6.3E-48 1.4E-52 314.3 18.2 162 7-177 1-167 (248)
8 cd03120 alpha_CARP_VIII Carbon 100.0 2.7E-47 5.8E-52 311.9 18.4 160 9-177 2-166 (256)
9 cd03125 alpha_CA_VI Carbonic a 100.0 3.8E-47 8.2E-52 309.9 18.2 161 7-177 1-167 (249)
10 KOG0382|consensus 100.0 5.4E-47 1.2E-51 309.5 16.9 170 3-178 9-181 (262)
11 cd03149 alpha_CA_VII Carbonic 100.0 1.9E-46 4.2E-51 303.6 17.2 151 24-176 1-152 (236)
12 cd03118 alpha_CA_V Carbonic an 100.0 7.5E-46 1.6E-50 300.2 18.1 151 24-176 1-152 (236)
13 cd03117 alpha_CA_IV_XV_like Ca 100.0 3E-45 6.4E-50 296.4 17.2 149 24-177 1-152 (234)
14 cd00326 alpha_CA Carbonic anhy 100.0 1.3E-42 2.7E-47 280.0 17.5 149 24-177 1-150 (227)
15 PLN02202 carbonate dehydratase 100.0 4.3E-42 9.4E-47 284.3 15.0 144 2-169 33-176 (284)
16 PLN02179 carbonic anhydrase 100.0 1.3E-41 2.8E-46 274.5 15.6 141 4-169 43-183 (235)
17 cd03124 alpha_CA_prokaryotic_l 100.0 1.4E-40 3.1E-45 266.2 15.8 137 7-168 1-137 (216)
18 COG3338 Cah Carbonic anhydrase 100.0 1.2E-40 2.6E-45 261.8 11.0 141 2-168 30-170 (250)
19 COG3955 Exopolysaccharide bios 57.8 18 0.00039 28.3 3.9 60 109-174 97-160 (211)
20 KOG3110|consensus 52.2 31 0.00068 25.8 4.3 50 107-165 77-127 (153)
21 PF00976 ACTH_domain: Corticot 47.1 8.7 0.00019 22.1 0.5 7 93-99 6-12 (39)
22 PF09211 DUF1958: Domain of un 46.6 5.6 0.00012 25.9 -0.3 18 103-120 7-24 (65)
23 PF12117 DUF3580: Protein of u 42.3 17 0.00037 26.0 1.6 26 9-35 1-27 (120)
24 PF01687 Flavokinase: Riboflav 36.1 38 0.00083 24.7 2.7 51 105-165 63-114 (125)
25 PF03452 Anp1: Anp1; InterPro 32.5 60 0.0013 27.0 3.6 55 117-175 4-58 (269)
26 COG3443 Predicted periplasmic 32.3 2E+02 0.0044 22.4 6.1 11 89-99 151-161 (193)
27 PF08942 DUF1919: Domain of un 30.6 16 0.00035 29.0 -0.0 51 113-174 93-152 (201)
28 COG0196 RibF FAD synthase [Coe 24.0 1.1E+02 0.0023 26.0 3.6 55 102-166 239-294 (304)
No 1
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=1.9e-53 Score=348.18 Aligned_cols=169 Identities=50% Similarity=0.943 Sum_probs=155.5
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeecc-CeeeEEEecCcEEEEEeCCCCCeeEEEecCCCCc
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKN-KVSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAY 85 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~-~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~ 85 (180)
||++|+.++|+|..|++|++||||||.+..+.+++.+.+|.++|. ....+|.|+||||+|.+..+. .+.++||+|..
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~~--~~~i~gG~l~~ 78 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKDP--VVNISGGPLSY 78 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCCC--ceEEeCCCCCC
Confidence 799999999999999899999999999988877788899999887 667899999999999987542 46688999999
Q ss_pred ceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhh
Q psy11192 86 RYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFN 165 (180)
Q Consensus 86 ~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~ 165 (180)
+|+|.|||||||+++..||||+|||++|||||||||++.++|.+++||+++++++|||||||++++.+|+.|++|++.|.
T Consensus 79 ~Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~ 158 (256)
T cd03121 79 RYRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDT 158 (256)
T ss_pred cEEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999967999999999999999999999999767999999999999
Q ss_pred --hccCCCeEEEec
Q psy11192 166 --KVLFRDFVVRYV 177 (180)
Q Consensus 166 --~i~~~~~~~~~~ 177 (180)
.|..+++++.+.
T Consensus 159 ~~~i~~~~~~~~~~ 172 (256)
T cd03121 159 ITSIRYKGDAYFLQ 172 (256)
T ss_pred ccccccCCceeecC
Confidence 998888887653
No 2
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=8.5e-51 Score=333.17 Aligned_cols=168 Identities=28% Similarity=0.610 Sum_probs=151.4
Q ss_pred CCCCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccCe-eeEEEecCcEEEEEeCCCCCeeEEEec
Q psy11192 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKV-SGVLQNTGQSLVFRVDKDTKHHVNISG 80 (180)
Q Consensus 2 ~~~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~i~N~G~tv~v~~~~~~~~~~~i~G 80 (180)
|.+..||.+|+.++| ||+|++||||||.+..+.+++.+.+|.++|... ..+|.|+||||++.+.+... .+.+.|
T Consensus 7 Y~~~~gp~~W~~~~~----~~~G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~-~~~~~g 81 (259)
T cd03119 7 YDSHNGPEHWHELFP----IAKGDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDD-RSVLRG 81 (259)
T ss_pred CCCCCCcccccccCc----CCCCCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCCC-cceEeC
Confidence 677889999999877 447999999999988887778889999999753 57999999999999975432 345889
Q ss_pred CCCCcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHH
Q psy11192 81 GPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIV 160 (180)
Q Consensus 81 g~l~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i 160 (180)
|+|..+|+|.|||||||..+..||||+|||++|||||||||++.+ |.+++||+.+++++|||||||++++ +|++|++|
T Consensus 82 g~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~-y~~~~~A~~~~~glaVvgvl~~~g~-~n~~l~~i 159 (259)
T cd03119 82 GPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSK-YGSFGEAAKQPDGLAVVGVFLKVGE-ANPELQKV 159 (259)
T ss_pred CCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEeccc-CCCHHHHhcCCCCeEEEEEEEEecc-cchhHHHH
Confidence 999999999999999999999999999999999999999999997 9999999999999999999999998 69999999
Q ss_pred HHhhhhccCCCeEEEe
Q psy11192 161 TTNFNKVLFRDFVVRY 176 (180)
Q Consensus 161 ~~~l~~i~~~~~~~~~ 176 (180)
++.|+.|..+++++.+
T Consensus 160 ~~~l~~i~~~~~~~~~ 175 (259)
T cd03119 160 LDALDSIKTKGKQAPF 175 (259)
T ss_pred HHHHHHhccCCceeee
Confidence 9999999988887654
No 3
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=3.3e-49 Score=322.68 Aligned_cols=166 Identities=31% Similarity=0.575 Sum_probs=145.3
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccC---eeeEEEecCcEEEEEeCCCCCeeEEEecCCC
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNK---VSGVLQNTGQSLVFRVDKDTKHHVNISGGPL 83 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~---~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l 83 (180)
||++|+..++ .|++|++||||||.+..+.....+++|.+.|.. ..++|.|+||||+|.+.++. ..+.|+||+|
T Consensus 1 gp~~W~~~~~---~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~-~~~~i~gg~l 76 (253)
T cd03122 1 NPKHWAKKYP---ACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNS-SDPFVSGGPL 76 (253)
T ss_pred CcccccccCC---cCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCC-CceEEeCCCC
Confidence 7999999655 697799999999988644333338899998753 56899999999999997533 2456999999
Q ss_pred CcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHh
Q psy11192 84 AYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTN 163 (180)
Q Consensus 84 ~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~ 163 (180)
..+|+|.|||||||+++..||||+|||++|||||||||++.+ |.+..||+++++++|||||||++++.+|++|++|++.
T Consensus 77 ~~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~-~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~ 155 (253)
T cd03122 77 LGRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTD-FFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEG 155 (253)
T ss_pred CCcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCC-CCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHH
Confidence 999999999999999999999999999999999999999998 8888899999999999999999996679999999999
Q ss_pred hhhccCCCeEEEec
Q psy11192 164 FNKVLFRDFVVRYV 177 (180)
Q Consensus 164 l~~i~~~~~~~~~~ 177 (180)
|..|..+++++.++
T Consensus 156 l~~i~~~~~~~~~~ 169 (253)
T cd03122 156 LRNVSRPGKEVELP 169 (253)
T ss_pred HHhcCCCCcEEEcC
Confidence 99999998877653
No 4
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=1.4e-48 Score=317.93 Aligned_cols=161 Identities=24% Similarity=0.476 Sum_probs=143.1
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceee-eccC---eeeEEEecCcEEEEEeCCCCCeeEEEecCC
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI-DKNK---VSGVLQNTGQSLVFRVDKDTKHHVNISGGP 82 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~---~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~ 82 (180)
||++|+.++| .| +|++||||||.+..+.+++.+++|.| +|.. ..++|+|+||||+|.+.+. ..+.||+
T Consensus 1 ~~~~W~~~~~---~c-~G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~----~~~~~g~ 72 (247)
T cd03150 1 GQPPWPSVSP---AC-AGRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSG----LRMALGP 72 (247)
T ss_pred CCCcccccCC---CC-CCCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEecc----cccccCC
Confidence 6889999887 49 59999999999988777888999988 5652 2579999999999998753 3466765
Q ss_pred CCcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHH
Q psy11192 83 LAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTT 162 (180)
Q Consensus 83 l~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~ 162 (180)
..+|+|.|||||||+++..||||+|||++|||||||||++.+ |.+++||+++++|||||||||++++.+|+.|+.|++
T Consensus 73 -~~~Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~-y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~ 150 (247)
T cd03150 73 -GQEYRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTA-FANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLS 150 (247)
T ss_pred -CCcEEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeeccc-CCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHH
Confidence 689999999999999999999999999999999999999997 999999999999999999999999767999999999
Q ss_pred hhhhccCCCeEEEec
Q psy11192 163 NFNKVLFRDFVVRYV 177 (180)
Q Consensus 163 ~l~~i~~~~~~~~~~ 177 (180)
.|..|..+++++.++
T Consensus 151 ~l~~i~~~~~~~~~~ 165 (247)
T cd03150 151 RLSEISEEESETVVP 165 (247)
T ss_pred HHHhhCCCCceeecC
Confidence 999999888876653
No 5
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=1.6e-48 Score=319.21 Aligned_cols=170 Identities=31% Similarity=0.640 Sum_probs=147.3
Q ss_pred CCCCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccC-eeeEEEecCcEEEEEeCCCCCeeEEEec
Q psy11192 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNK-VSGVLQNTGQSLVFRVDKDTKHHVNISG 80 (180)
Q Consensus 2 ~~~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~i~N~G~tv~v~~~~~~~~~~~i~G 80 (180)
|++..||++|++++|+ | +|++||||||.+..+.+++.+.+|.+.|.. ...+|.|+||+++|.+++..... .+.|
T Consensus 3 Y~~~~gp~~W~~~~~~---~-~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~-~i~g 77 (256)
T PF00194_consen 3 YSGNNGPENWPKLYPC---C-GGKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKP-TISG 77 (256)
T ss_dssp SSTTTSGGGHHHTSGG---G-GSSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSS-EEEE
T ss_pred CCCCCChhhhhhhCcc---c-CCCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccc-eecC
Confidence 8899999999998773 6 799999999999888888888999998864 45699999999999998744333 4889
Q ss_pred CCCCcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHH
Q psy11192 81 GPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIV 160 (180)
Q Consensus 81 g~l~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i 160 (180)
|+|..+|+|.|||||||+++..||||+|||++|||||||||++.++|.++++|...++++||||+|+++++ .|+.|++|
T Consensus 78 ~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~-~n~~l~~i 156 (256)
T PF00194_consen 78 GPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGE-SNPFLQPI 156 (256)
T ss_dssp TTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS---GHHHHH
T ss_pred CCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccc-cccccchh
Confidence 99999999999999999999999999999999999999999995559999999999999999999999995 69999999
Q ss_pred HHhhhhccCCCeEEEec
Q psy11192 161 TTNFNKVLFRDFVVRYV 177 (180)
Q Consensus 161 ~~~l~~i~~~~~~~~~~ 177 (180)
++.|+.|..+++.+.+.
T Consensus 157 ~~~l~~i~~~~~~~~~~ 173 (256)
T PF00194_consen 157 LDALPNIPYPGSSTPIQ 173 (256)
T ss_dssp HHHGGGGTSTTEEEEEE
T ss_pred hhhhhhccccccccccc
Confidence 99999999999988765
No 6
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=5.2e-48 Score=315.03 Aligned_cols=160 Identities=29% Similarity=0.570 Sum_probs=140.6
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceee-eccC---eeeEEEecCcEEEEEeCCCCCeeEEEecCC
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI-DKNK---VSGVLQNTGQSLVFRVDKDTKHHVNISGGP 82 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~---~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~ 82 (180)
||++|+..+| .|+ |++||||||.+..+.+++.+++|.| +|.. ..++|.|+||||+|.+.+. +.+ ++
T Consensus 1 gp~~W~~~~~---~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~~----~~~--~~ 70 (249)
T cd03126 1 GENSWPKKYP---FCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPPT----MHI--GG 70 (249)
T ss_pred CCCcccccCC---CCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcCC----cee--cC
Confidence 7999998766 594 9999999999988777889999999 5763 2579999999999998752 334 35
Q ss_pred CCcceEeEEEEEEeeCCCC-CCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHH
Q psy11192 83 LAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVT 161 (180)
Q Consensus 83 l~~~Y~l~q~HfHWG~~~~-~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~ 161 (180)
|+.+|+|.|||||||+++. .||||+|||++|||||||||+|.++|.++++|+++++|||||||||++++ .|+.|+.|+
T Consensus 71 l~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~-~n~~~~~i~ 149 (249)
T cd03126 71 LPFKYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGP-FNPSYEKIF 149 (249)
T ss_pred CCccEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecC-CChhHHHHH
Confidence 6789999999999999654 89999999999999999999998669999999999999999999999998 599999999
Q ss_pred HhhhhccCCCeEEEec
Q psy11192 162 TNFNKVLFRDFVVRYV 177 (180)
Q Consensus 162 ~~l~~i~~~~~~~~~~ 177 (180)
+.|..|..+++++.++
T Consensus 150 ~~l~~i~~~~~~~~~~ 165 (249)
T cd03126 150 SHLHEVKYKDQKVSVP 165 (249)
T ss_pred HHhhhcccCCceeEcC
Confidence 9999999888877653
No 7
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=6.3e-48 Score=314.34 Aligned_cols=162 Identities=27% Similarity=0.577 Sum_probs=142.8
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceee-eccC--e-eeEEEecCcEEEEEeCCCCCeeEEEecCC
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI-DKNK--V-SGVLQNTGQSLVFRVDKDTKHHVNISGGP 82 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~--~-~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~ 82 (180)
||++|+.++| .| +|++||||||.+..+.+++.+++|.| +|.. . .++|.|+||||+|.+.+. ..+.||+
T Consensus 1 ~p~~W~~~~~---~C-~G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~----~~~~gg~ 72 (248)
T cd03123 1 GEDHWPKKYP---AC-GGKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPT----MHIRGGP 72 (248)
T ss_pred CCCcccccCc---CC-CCCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCC----ccccCCC
Confidence 6999998876 59 59999999999988777788899998 5753 2 679999999999998752 3466665
Q ss_pred CCcceEeEEEEEEeeCCC-CCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHH
Q psy11192 83 LAYRYQFEEFYFRYGQVN-DKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVT 161 (180)
Q Consensus 83 l~~~Y~l~q~HfHWG~~~-~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~ 161 (180)
..+|+|.|||||||+.+ ..||||+|||++|||||||||++.++|.++++|+..++++|||||||++++..|+.++.|+
T Consensus 73 -~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~ 151 (248)
T cd03123 73 -GTEYTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKII 151 (248)
T ss_pred -CCCEEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHH
Confidence 47999999999999998 5899999999999999999999996799999999999999999999999955699999999
Q ss_pred HhhhhccCCCeEEEec
Q psy11192 162 TNFNKVLFRDFVVRYV 177 (180)
Q Consensus 162 ~~l~~i~~~~~~~~~~ 177 (180)
+.|..|..+++++.++
T Consensus 152 ~~l~~i~~~~~~~~~~ 167 (248)
T cd03123 152 SHLHEIKYKGQETTVP 167 (248)
T ss_pred HHHHhhCcCCcEEecC
Confidence 9999999988877653
No 8
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=2.7e-47 Score=311.93 Aligned_cols=160 Identities=31% Similarity=0.553 Sum_probs=142.1
Q ss_pred CCccccCCCcccCCCCCCCCCceeeCCCceeCCCCC--ceeeeccC-eeeEEEecCcEEEEEeCCCCCeeEEEecCCCC-
Q psy11192 9 QYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLT--ELEIDKNK-VSGVLQNTGQSLVFRVDKDTKHHVNISGGPLA- 84 (180)
Q Consensus 9 ~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~--~l~~~y~~-~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~- 84 (180)
.+|+.++|. | +|++||||||.+..+.+++.+. +|.++|.. ..++|.|+|||++|.+... + .+.||+|.
T Consensus 2 ~~W~~~~~~---c-~G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~---~-~~~gg~l~~ 73 (256)
T cd03120 2 VEWGLLFPE---A-NGEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK---S-VLSGGPLPQ 73 (256)
T ss_pred CcccccCCC---C-CCCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC---c-eeecCCCCC
Confidence 589999885 8 6999999999998877777776 56777764 3579999999999998752 3 37799985
Q ss_pred -cceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHh
Q psy11192 85 -YRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTN 163 (180)
Q Consensus 85 -~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~ 163 (180)
.+|+|.|||||||+.+..||||+|||++|||||||||++.++|.++++|++.++|+|||||||++++ .|+.|+.|++.
T Consensus 74 ~~~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~-~n~~l~~i~~~ 152 (256)
T cd03120 74 GHEFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGK-EHVGLKAVTEI 152 (256)
T ss_pred CceEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecC-CCHhHHHHHHH
Confidence 6899999999999999999999999999999999999999779999999999999999999999998 59999999999
Q ss_pred hhhccCCCeEEEec
Q psy11192 164 FNKVLFRDFVVRYV 177 (180)
Q Consensus 164 l~~i~~~~~~~~~~ 177 (180)
|+.|..+++++.++
T Consensus 153 l~~i~~~~~~~~~~ 166 (256)
T cd03120 153 LQDIQYKGKSKTIP 166 (256)
T ss_pred hHhhccCCceeeec
Confidence 99999888877663
No 9
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=3.8e-47 Score=309.88 Aligned_cols=161 Identities=24% Similarity=0.507 Sum_probs=140.7
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceee-ecc--CeeeEEEecCcEEEEEeCCCCCeeEEEecCCC
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI-DKN--KVSGVLQNTGQSLVFRVDKDTKHHVNISGGPL 83 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l 83 (180)
+|.+|+..++ .| +|++||||||.+..+.+++.+++|.| +|. ...++|.|+||||+|.+.+. ..++|+ +
T Consensus 1 ~~~~W~~~~~---~C-~G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~----~~~~~~-~ 71 (249)
T cd03125 1 DESHWPEKYP---AC-GGKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPT----MSITTG-D 71 (249)
T ss_pred CCCcccccCc---CC-CCCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCC----cccccC-C
Confidence 4789998654 69 59999999999988777788999998 676 34689999999999999753 225454 4
Q ss_pred CcceEeEEEEEEeeCCCC--CCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCC-CCChhHHHH
Q psy11192 84 AYRYQFEEFYFRYGQVND--KGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGE-RSNDELRIV 160 (180)
Q Consensus 84 ~~~Y~l~q~HfHWG~~~~--~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~-~~n~~l~~i 160 (180)
..+|+|.|||||||.++. .||||+|||++|||||||||++.+ |.+++||+.+++|+|||||||++++ .+|+.|++|
T Consensus 72 ~~~Y~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~-y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i 150 (249)
T cd03125 72 GTVYTAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSK-YKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDF 150 (249)
T ss_pred CCCEEEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCC-CCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHH
Confidence 689999999999999885 799999999999999999999997 9999999999999999999999997 369999999
Q ss_pred HHhhhhccCCCeEEEec
Q psy11192 161 TTNFNKVLFRDFVVRYV 177 (180)
Q Consensus 161 ~~~l~~i~~~~~~~~~~ 177 (180)
++.|+.|..+++++.+.
T Consensus 151 ~~~l~~i~~~~~~~~~~ 167 (249)
T cd03125 151 ISKLAKIKYAGQTTTLT 167 (249)
T ss_pred HHHHhhcccCCceeecC
Confidence 99999999888887653
No 10
>KOG0382|consensus
Probab=100.00 E-value=5.4e-47 Score=309.50 Aligned_cols=170 Identities=32% Similarity=0.639 Sum_probs=149.8
Q ss_pred CCCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCC-CCCceeeecc-CeeeEEEecCcEEEEEeCCCCCeeEEEec
Q psy11192 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDP-HLTELEIDKN-KVSGVLQNTGQSLVFRVDKDTKHHVNISG 80 (180)
Q Consensus 3 ~~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~-~l~~l~~~y~-~~~~~i~N~G~tv~v~~~~~~~~~~~i~G 80 (180)
.+..||.+|++++|. | +|++||||||....+.+++ .+.++.++|. .....+.|||++..|.+..... ...++|
T Consensus 9 ~~~~gp~~W~~~~~~---~-~g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~-~~~i~g 83 (262)
T KOG0382|consen 9 KGNKGPEHWGKLYPE---W-KGKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG-KPEITG 83 (262)
T ss_pred ccccCCccccccCcC---c-CCCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC-Ccceec
Confidence 455699999999986 6 4999999999999999888 6777778776 4567899999666666554332 234899
Q ss_pred CCCCc-ceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHH
Q psy11192 81 GPLAY-RYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRI 159 (180)
Q Consensus 81 g~l~~-~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~ 159 (180)
|+|.. .|++.|+|||||+.+..||||+|||++|+||||+||+|. +|.+++||+++++|||||||||++|++.|++|++
T Consensus 84 g~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~-~y~~~~eA~~~p~GlAVv~vf~k~g~~~n~~l~~ 162 (262)
T KOG0382|consen 84 GPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNT-KYENFKEALSKPDGLAVVGVFLKIGKEENPFLSK 162 (262)
T ss_pred CCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEecc-ccCCHHHHhcCCCcEEEEEEeecccCCCChhHHH
Confidence 99988 899999999999999999999999999999999999995 5999999999999999999999999877999999
Q ss_pred HHHhhhhccCCCeEEEecC
Q psy11192 160 VTTNFNKVLFRDFVVRYVN 178 (180)
Q Consensus 160 i~~~l~~i~~~~~~~~~~~ 178 (180)
|++.|..|.++|+++.+++
T Consensus 163 l~~~L~~I~~k~~~~~l~~ 181 (262)
T KOG0382|consen 163 LTDALKRIKYKGQSTTLPG 181 (262)
T ss_pred HHHHhhccccCCcccccCC
Confidence 9999999999999998875
No 11
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=1.9e-46 Score=303.63 Aligned_cols=151 Identities=30% Similarity=0.614 Sum_probs=136.6
Q ss_pred CCCCCCceeeCCCceeCCCCCceeeeccC-eeeEEEecCcEEEEEeCCCCCeeEEEecCCCCcceEeEEEEEEeeCCCCC
Q psy11192 24 GRRQSPINVDPEHLLFDPHLTELEIDKNK-VSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDK 102 (180)
Q Consensus 24 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~~Y~l~q~HfHWG~~~~~ 102 (180)
|++||||||.+..+.+++.+.+|.++|.. ..++|.|+||||+|.+.+... .+.+.||+|..+|+|.|||||||+++..
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~-~~~~~gg~l~~~Y~l~q~HfHwG~~~~~ 79 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDD-KTVITGGPLENPYRLKQFHFHWGAKHGS 79 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCC-ceEEecCCCCCcEEEEEEEEecCCCCCC
Confidence 78999999999888778889999999974 467999999999999875322 3458899999999999999999999999
Q ss_pred CCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEEEe
Q psy11192 103 GSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVVRY 176 (180)
Q Consensus 103 gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~ 176 (180)
||||+|||++|||||||||++.++|.++++|+.+++|+|||||||++++ .|+.|+.|++.|..|..+++++.+
T Consensus 80 gSEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~-~n~~l~~i~~~l~~i~~~~~~~~~ 152 (236)
T cd03149 80 GSEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGD-EHPGLNRLTDALYMVRFKGTKAQF 152 (236)
T ss_pred CCceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecC-CCccHHHHHHHhhhcccCCcceee
Confidence 9999999999999999999998669999999999999999999999998 499999999999999988877655
No 12
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=7.5e-46 Score=300.16 Aligned_cols=151 Identities=32% Similarity=0.612 Sum_probs=135.7
Q ss_pred CCCCCCceeeCCCceeCCCCCceeeeccC-eeeEEEecCcEEEEEeCCCCCeeEEEecCCCCcceEeEEEEEEeeCCCCC
Q psy11192 24 GRRQSPINVDPEHLLFDPHLTELEIDKNK-VSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDK 102 (180)
Q Consensus 24 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~~Y~l~q~HfHWG~~~~~ 102 (180)
|++||||||.+..+.+++.+++|.++|.. ..++|.|+||||+|.+..+.. ...+.||+|..+|+|.|||||||+++..
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~-~~~~~gg~l~~~Y~l~q~HfHwG~~~~~ 79 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTD-KSGISGGPLENHYRLKQFHFHWGANNEW 79 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCC-ceEEecCCCCCcEEEEEEEEEECCCCCC
Confidence 78999999998887778889999999974 357999999999999875332 2347899999999999999999999999
Q ss_pred CCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEEEe
Q psy11192 103 GSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVVRY 176 (180)
Q Consensus 103 gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~ 176 (180)
||||+|||++|||||||||++.++|.++++|+.+++++|||||||+++++ |+.|+.|++.|+.|..+++++.+
T Consensus 80 gSEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~-n~~l~~i~~~l~~i~~~~~~~~~ 152 (236)
T cd03118 80 GSEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAH-HEGLQKLVDALPEVRHKDTVVEF 152 (236)
T ss_pred CCceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCc-CccHHHHHHHHHhcCcCCceeee
Confidence 99999999999999999999986699999999999999999999999984 99999999999999988877654
No 13
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=3e-45 Score=296.40 Aligned_cols=149 Identities=25% Similarity=0.470 Sum_probs=136.6
Q ss_pred CCCCCCceeeCCCceeCCCCCceee-eccC--eeeEEEecCcEEEEEeCCCCCeeEEEecCCCCcceEeEEEEEEeeCCC
Q psy11192 24 GRRQSPINVDPEHLLFDPHLTELEI-DKNK--VSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVN 100 (180)
Q Consensus 24 G~~QSPInI~~~~~~~~~~l~~l~~-~y~~--~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~~Y~l~q~HfHWG~~~ 100 (180)
|++||||||.+..+.++..+++|.| +|.. ...+|.|+|||++|.+.+ .+.++||+|...|+|.|||||||+++
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~----~~~i~gg~L~~~Y~l~qfHfH~G~~~ 76 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD----GAKISGGGLPGTYKALQFHFHWGSNG 76 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC----CceEeCCCCCCcEEEEEEEEEeCCCC
Confidence 7899999999988777788999999 6763 578999999999999875 34589999999999999999999999
Q ss_pred CCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEEEec
Q psy11192 101 DKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVVRYV 177 (180)
Q Consensus 101 ~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~ 177 (180)
..||||+|||++|||||||||++.+ |.+++||++.++++|||||||++++.+|+.|++|++.|..|..+++++.++
T Consensus 77 ~~gSEH~idg~~~~~E~HlVH~n~~-~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~ 152 (234)
T cd03117 77 SPGSEHTIDGERYPMELHIVHIKES-YNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQKGGSTNLT 152 (234)
T ss_pred CCCCcceeCCeecchheeeeEecCC-CCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhcccCCceeecC
Confidence 9999999999999999999999998 999999999999999999999999667999999999999999888877654
No 14
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=1.3e-42 Score=279.97 Aligned_cols=149 Identities=34% Similarity=0.596 Sum_probs=134.9
Q ss_pred CCCCCCceeeCCCceeCCCCCceeeeccC-eeeEEEecCcEEEEEeCCCCCeeEEEecCCCCcceEeEEEEEEeeCCCCC
Q psy11192 24 GRRQSPINVDPEHLLFDPHLTELEIDKNK-VSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDK 102 (180)
Q Consensus 24 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~~Y~l~q~HfHWG~~~~~ 102 (180)
|++||||||.+..+.++..+++|.+.|.. ...+|.|+|||++|.+... ...++|++|..+|+|.|||||||+.+..
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~---~~~i~~~~l~~~y~l~q~HfH~G~~~~~ 77 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDD---GGTLSGGGLPGRYKLVQFHFHWGSENSP 77 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCC---CceEeCCCCCCCEEEEEEEEecCCCCCC
Confidence 78999999999888777779999998875 6789999999999999862 1237788898999999999999999999
Q ss_pred CCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEEEec
Q psy11192 103 GSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVVRYV 177 (180)
Q Consensus 103 gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~ 177 (180)
||||+|||++|||||||||++.+ |.+. ||.++++++|||||||+++..+|++|++|++.+..+..+++++.++
T Consensus 78 gSEH~i~g~~y~~E~H~Vh~~~~-~~~~-~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~~ 150 (227)
T cd00326 78 GSEHTIDGKRYPLELHLVHYNSD-YYSS-EAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKYKGKETTLP 150 (227)
T ss_pred CCcceeCCEeccccceEEEECCC-CCCh-hhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCcCCcEeecC
Confidence 99999999999999999999998 7777 9999999999999999999667999999999999999888887764
No 15
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=4.3e-42 Score=284.32 Aligned_cols=144 Identities=19% Similarity=0.419 Sum_probs=126.7
Q ss_pred CCCCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccCeeeEEEecCcEEEEEeCCCCCeeEEEecC
Q psy11192 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHVNISGG 81 (180)
Q Consensus 2 ~~~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg 81 (180)
|.|..||++|+.++|+|..|++|++||||||.+..+.+++.+.+|.++|.....+|.|+|||+++.+.++. ..+.+.|
T Consensus 33 Y~~~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~l~N~Ghtv~v~~~~~~-~~~~~~g- 110 (284)
T PLN02202 33 YKGKNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNATLVNHVCNVAMFFGEGA-GDVIIDN- 110 (284)
T ss_pred CCCCCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeeccCCceEEEECCccEEEEEcCCC-CeeEECC-
Confidence 67889999999999999999899999999999877666778889999987667799999999999996432 2454544
Q ss_pred CCCcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHH
Q psy11192 82 PLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVT 161 (180)
Q Consensus 82 ~l~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~ 161 (180)
.+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++++ .|++|+.|+
T Consensus 111 ---~~Y~L~QfHFH~------gSEH~idG~~yp~E~H~VH~~~~------------g~laVlgv~~~~g~-~n~~l~~i~ 168 (284)
T PLN02202 111 ---KNYTLLQMHWHT------PSEHHLHGVQYAAELHMVHQAKD------------GSFAVVASLFKIGT-EEPFLSQMK 168 (284)
T ss_pred ---cEEEEEEEEecC------CcccEECCeeCCeEEEEEEEcCC------------CCEEEEEEEEeccC-CChHHHHHH
Confidence 689999999996 79999999999999999999876 88999999999998 599999999
Q ss_pred HhhhhccC
Q psy11192 162 TNFNKVLF 169 (180)
Q Consensus 162 ~~l~~i~~ 169 (180)
+.|..+..
T Consensus 169 ~~l~~i~~ 176 (284)
T PLN02202 169 DKLVKLKE 176 (284)
T ss_pred HHHHHhhc
Confidence 99988754
No 16
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.3e-41 Score=274.54 Aligned_cols=141 Identities=24% Similarity=0.455 Sum_probs=120.5
Q ss_pred CCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccCeeeEEEecCcEEEEEeCCCCCeeEEEecCCC
Q psy11192 4 MSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHVNISGGPL 83 (180)
Q Consensus 4 ~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l 83 (180)
+..||++|+.++|+|..|.+|++||||||.+..+.... .++|.+.|.....+|.|+|||+++.+..+.. .+.+.|
T Consensus 43 ~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~~~l~~~y~~~~~~i~N~Ghtv~v~~~~~~~-~~~i~g--- 117 (235)
T PLN02179 43 TEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIH-DQALSRHYKPAPAVIQSRGHDVMVSWKGDAG-KITIHQ--- 117 (235)
T ss_pred CCCCchhhhhcChhhhhccCCCcCCCEEeecccccccc-CCCcccccCCccEEEEECCeEEEEEecCCCC-eeEecC---
Confidence 67899999999999999988999999999886543221 2467778877778999999999999864332 455665
Q ss_pred CcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHh
Q psy11192 84 AYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTN 163 (180)
Q Consensus 84 ~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~ 163 (180)
.+|+|.|||||| ||||+|||++|||||||||++++ +++|||||||++|+ .|+.+++|++.
T Consensus 118 -~~Y~L~QfHFH~------gSEH~InG~~yp~E~H~VH~n~~------------g~laVlgvl~~~g~-~n~~l~~il~~ 177 (235)
T PLN02179 118 -TDYKLVQCHWHS------PSEHTINGTSYDLELHMVHTSAS------------GKTAVVGVLYKLGE-PDEFLTKLLNG 177 (235)
T ss_pred -cEEEEEEEEecC------CcceEecccccCeeEEEEEEcCC------------CCeEEEEEEEecCC-CCHHHHHHHHh
Confidence 689999999995 89999999999999999999876 88999999999998 59999999999
Q ss_pred hhhccC
Q psy11192 164 FNKVLF 169 (180)
Q Consensus 164 l~~i~~ 169 (180)
++.+..
T Consensus 178 l~~~~~ 183 (235)
T PLN02179 178 IKGVGK 183 (235)
T ss_pred hhcccC
Confidence 988753
No 17
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=1.4e-40 Score=266.21 Aligned_cols=137 Identities=28% Similarity=0.551 Sum_probs=121.8
Q ss_pred CCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccCeeeEEEecCcEEEEEeCCCCCeeEEEecCCCCcc
Q psy11192 7 GPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHVNISGGPLAYR 86 (180)
Q Consensus 7 gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg~l~~~ 86 (180)
||.+|+.++++|+.|++|++||||||.+..+..+. +++|.+.|....+++.|+||++++.+.+.. ..+.+.| .+
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~-~~~~~~g----~~ 74 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGNG-GTLTIDG----ET 74 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCCC-CeEEECC----cE
Confidence 79999999999999988999999999987766655 889999987778899999999999998532 2455765 79
Q ss_pred eEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhh
Q psy11192 87 YQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNK 166 (180)
Q Consensus 87 Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~ 166 (180)
|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||+++. .|+++++|++.|..
T Consensus 75 Y~l~q~HfH~------gSEH~idg~~y~~ElH~Vh~~~~------------~~laVl~v~~~~~~-~n~~l~~i~~~l~~ 135 (216)
T cd03124 75 YQLLQFHFHS------PSEHLINGKRYPLEAHLVHKSKD------------GQLAVVAVLFEEGK-ENPFLKKILDNMPK 135 (216)
T ss_pred EEEEEEEecC------CcccEeccccCCceeeEEEEcCC------------CCEEEEEEEEeecC-CCHHHHHHHHhhhh
Confidence 9999999996 89999999999999999999876 89999999999996 69999999999988
Q ss_pred cc
Q psy11192 167 VL 168 (180)
Q Consensus 167 i~ 168 (180)
+.
T Consensus 136 ~~ 137 (216)
T cd03124 136 KE 137 (216)
T ss_pred hc
Confidence 75
No 18
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=261.78 Aligned_cols=141 Identities=25% Similarity=0.530 Sum_probs=127.0
Q ss_pred CCCCCCCCCccccCCCcccCCCCCCCCCceeeCCCceeCCCCCceeeeccCeeeEEEecCcEEEEEeCCCCCeeEEEecC
Q psy11192 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHVNISGG 81 (180)
Q Consensus 2 ~~~~~gP~~W~~~~p~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~i~N~G~tv~v~~~~~~~~~~~i~Gg 81 (180)
|.|..||++|+++.|++..|+.|++||||||...... ...+++.++|.+...+|.|||||+++.+.++.+ .+.++|
T Consensus 30 Y~g~~GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~--~~~~~l~~~Y~~s~~~i~nnghTiqv~~~~~~n-~l~~~g- 105 (250)
T COG3338 30 YTGKEGPEHWGELSPDFEACAEGKNQSPIDIEHAVDV--QDKPPLQLNYQPSAVTIKNNGHTIQVNFEPGSN-HLRYDG- 105 (250)
T ss_pred ccCCcCchhhhhcCchhhHhhccccCCCccHHHheec--ccccchheeeccCceEEEecCcEEEEeccCCCc-ceeecC-
Confidence 7899999999999999999999999999999765432 256789999998899999999999999987642 566666
Q ss_pred CCCcceEeEEEEEEeeCCCCCCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHH
Q psy11192 82 PLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVT 161 (180)
Q Consensus 82 ~l~~~Y~l~q~HfHWG~~~~~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~ 161 (180)
..|.|.||||| .||||.|||+.||||+||||.+.+ +.|+|||+|++.|.+ |+.|..|+
T Consensus 106 ---k~y~L~qfHFH------~PsEhlv~Gk~~pmEaHFVHkd~~------------g~L~Vl~v~~~~g~e-N~~l~~l~ 163 (250)
T COG3338 106 ---KTYQLVQFHFH------APSEHLVDGKSFPMEAHFVHKDAK------------GTLAVLAVLLQAGAE-NPELAPLW 163 (250)
T ss_pred ---cEEEEEEEEec------CchHHhhccccccceeeeeecCCC------------CCEEEEEEeeecCCC-CcchhHHH
Confidence 79999999999 999999999999999999999987 889999999999984 99999999
Q ss_pred Hhhhhcc
Q psy11192 162 TNFNKVL 168 (180)
Q Consensus 162 ~~l~~i~ 168 (180)
+.++...
T Consensus 164 ~~fP~~~ 170 (250)
T COG3338 164 EGFPQKP 170 (250)
T ss_pred Hhccccc
Confidence 9998863
No 19
>COG3955 Exopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=57.79 E-value=18 Score=28.28 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=32.7
Q ss_pred ccCCCCceeEEEeeccccCCChhHhhcC----CCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEE
Q psy11192 109 HGYSFPGEIQLYGYNAELYHNMSEAQHK----PQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVV 174 (180)
Q Consensus 109 dG~~~~~E~H~Vh~~~~~y~~~~eA~~~----~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~ 174 (180)
-|.--+.++||.| |+|++||.++ ...+--=-.|++-.+. ...-+.++..++++.++++..
T Consensus 97 ~G~LgDi~ihF~H-----y~S~eEAk~kWe~RkkRin~~NLfikm~~k-d~v~Ek~v~~fDnLPykNKvi 160 (211)
T COG3955 97 KGSLGDIIIHFNH-----YASFEEAKNKWELRKKRINLKNLFIKMTDK-DGVNEKLVKRFDNLPYKNKVI 160 (211)
T ss_pred CCccccEEEeecc-----hhhHHHHHhHHHHHHhhccccceEEEEecC-CCccHHHHHHhhcCCccceEE
Confidence 4555579999999 6678999642 2233333344444332 122344455555555565543
No 20
>KOG3110|consensus
Probab=52.18 E-value=31 Score=25.77 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=29.1
Q ss_pred eeccCCCCceeEEEeeccc-cCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhh
Q psy11192 107 QIHGYSFPGEIQLYGYNAE-LYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFN 165 (180)
Q Consensus 107 ~idG~~~~~E~H~Vh~~~~-~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~ 165 (180)
..+.+.-.||+|++|.-.. .|+.. =.+++||++-..- .=..|+.|++.+.
T Consensus 77 ~Y~N~~Kt~E~hlih~f~~DFYge~-------l~~~IvGyiRpe~--nf~slesLi~~I~ 127 (153)
T KOG3110|consen 77 YYKNKKKTMELHLIHDFGEDFYGET-------LKVIIVGYIRPEL--NFDSLESLIEAIH 127 (153)
T ss_pred ccCCcccceeeeeehhcccchhhhe-------eeEEEEEeecccc--CcchHHHHHHHHH
Confidence 3466788899999997543 34211 2356666653321 1245777776653
No 21
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=47.07 E-value=8.7 Score=22.11 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=5.9
Q ss_pred EEEeeCC
Q psy11192 93 YFRYGQV 99 (180)
Q Consensus 93 HfHWG~~ 99 (180)
||.||..
T Consensus 6 hfrwgkp 12 (39)
T PF00976_consen 6 HFRWGKP 12 (39)
T ss_pred ceeccCC
Confidence 8999975
No 22
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=46.60 E-value=5.6 Score=25.85 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=13.0
Q ss_pred CCceeeccCCCCceeEEE
Q psy11192 103 GSEHQIHGYSFPGEIQLY 120 (180)
Q Consensus 103 gSEH~idG~~~~~E~H~V 120 (180)
-.||+|||+.|-.+=-|.
T Consensus 7 kG~h~IdGk~y~v~kDlY 24 (65)
T PF09211_consen 7 KGEHTIDGKKYYVKKDLY 24 (65)
T ss_dssp SEEEEETTEEEEESS-EE
T ss_pred CccEEECCEEEEecCChh
Confidence 358999999987764443
No 23
>PF12117 DUF3580: Protein of unknown function (DUF3580); InterPro: IPR021972 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This domain is found in the parvovirus NS1 protein and is about 120 amino acids in length. It is located immediately C-terminal to the helicase domain and its function is not known.
Probab=42.28 E-value=17 Score=25.98 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=18.5
Q ss_pred CCccccCCCcc-cCCCCCCCCCceeeCC
Q psy11192 9 QYWGRINPEWS-LCNKGRRQSPINVDPE 35 (180)
Q Consensus 9 ~~W~~~~p~~~-~C~~G~~QSPInI~~~ 35 (180)
.+|++. |+|+ .-..-+.|.|||-..+
T Consensus 1 ~hWGkV-PdWsE~WaEPk~qtpINs~g~ 27 (120)
T PF12117_consen 1 HHWGKV-PDWSENWAEPKMQTPINSPGS 27 (120)
T ss_pred CCcccC-CChhhccccccccCCcCCccc
Confidence 378885 6776 3345688999998654
No 24
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=36.12 E-value=38 Score=24.69 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=29.4
Q ss_pred ceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCC-CCChhHHHHHHhhh
Q psy11192 105 EHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGE-RSNDELRIVTTNFN 165 (180)
Q Consensus 105 EH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~-~~n~~l~~i~~~l~ 165 (180)
--|+++.....|.||.-++.+.| +..+-|.++-.+-+ ..=..++.|.+++.
T Consensus 63 ~PTf~~~~~~vE~hildf~~dlY----------g~~i~v~~~~~lR~e~kF~s~e~L~~qI~ 114 (125)
T PF01687_consen 63 RPTFDGKERTVEVHILDFDGDLY----------GKKIKVEFLKFLRPEKKFDSLEELKEQIK 114 (125)
T ss_dssp ETTTSSCEEEEEEEETTSSSE-T----------TSEEEEEEEEEEEE----SSHHHHHHHHH
T ss_pred CCccCcCceeEEEEEeccCcccC----------CCeEEEEEEeCccCCcccCCHHHHHHHHH
Confidence 34577788889999998877766 44444444433322 22345666666654
No 25
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=32.54 E-value=60 Score=27.03 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=35.6
Q ss_pred eEEEeeccccCCChhHhhcCCCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEEE
Q psy11192 117 IQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVVR 175 (180)
Q Consensus 117 ~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~~ 175 (180)
-|++|++-+...+-..+......++||..+=+ ...++...++.|.++.++.....
T Consensus 4 ~~~~~~~ln~~~~~~~~~~~~e~VLILtplrn----a~~~l~~y~~~L~~L~YP~~lIs 58 (269)
T PF03452_consen 4 SHIVHYDLNKLTSTSDAARNKESVLILTPLRN----AASFLPDYFDNLLSLTYPHELIS 58 (269)
T ss_pred CceEEEECCcccCCCcccccCCeEEEEEecCC----chHHHHHHHHHHHhCCCCchheE
Confidence 36777776645555566666677888777633 24567777777777777654443
No 26
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=32.26 E-value=2e+02 Score=22.36 Aligned_cols=11 Identities=18% Similarity=0.156 Sum_probs=5.5
Q ss_pred eEEEEEEeeCC
Q psy11192 89 FEEFYFRYGQV 99 (180)
Q Consensus 89 l~q~HfHWG~~ 99 (180)
...||+-||.+
T Consensus 151 a~HfHif~G~d 161 (193)
T COG3443 151 ASHFHIFMGND 161 (193)
T ss_pred cceeEEEecCc
Confidence 44555555544
No 27
>PF08942 DUF1919: Domain of unknown function (DUF1919); InterPro: IPR015037 This protein has no known function. It is found in various hypothetical and putative bacterial proteins. ; PDB: 2G6T_B.
Probab=30.64 E-value=16 Score=29.02 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCceeEEEeeccccCCChhHhhcC---------CCcEEEEEEEEEeCCCCChhHHHHHHhhhhccCCCeEE
Q psy11192 113 FPGEIQLYGYNAELYHNMSEAQHK---------PQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVV 174 (180)
Q Consensus 113 ~~~E~H~Vh~~~~~y~~~~eA~~~---------~~glaVlav~~~~~~~~n~~l~~i~~~l~~i~~~~~~~ 174 (180)
-+.|+||+|| .|++||..+ -+.|-| ++...+ . .-..++...+++..+++-+
T Consensus 93 ~dIeihF~HY-----~s~~eA~~KW~~R~kRIN~dnl~i---~~~d~d--~-~~~e~l~~Fd~LPfknKV~ 152 (201)
T PF08942_consen 93 GDIEIHFMHY-----KSFEEAKEKWNRRKKRINWDNLFI---KFTDRD--G-CTEEDLERFDKLPFKNKVV 152 (201)
T ss_dssp C-EEEEESS------SSHHHHHHHHHHHHCC--CCCEEE---EEE--S--S---HHHHHHHHTSS-SSEEE
T ss_pred CCEEEEEEec-----CCHHHHHHHHHHHHhccChhcEEE---EEecCC--C-ccHHHHHHHHhCCcccEEE
Confidence 5689999994 567888532 133333 344322 2 2444556666666666544
No 28
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=23.98 E-value=1.1e+02 Score=26.03 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCCceeeccCCCCceeEEEeeccccCCChhHhhcCCCcEEEEEEEEEe-CCCCChhHHHHHHhhhh
Q psy11192 102 KGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQL-GERSNDELRIVTTNFNK 166 (180)
Q Consensus 102 ~gSEH~idG~~~~~E~H~Vh~~~~~y~~~~eA~~~~~glaVlav~~~~-~~~~n~~l~~i~~~l~~ 166 (180)
-|--=|+++....+|+|+..++.++| +..+-|-++-.+ .+...+.++.+.+++.+
T Consensus 239 vG~rpt~~~~~~~lEvhi~Df~~dlY----------G~~i~v~~~~~iR~e~kF~s~d~L~~qi~~ 294 (304)
T COG0196 239 VGYRPTVDGSERSLEVHILDFNGDLY----------GERVKVRFLKFIRDEKKFDSLDELKEQIEK 294 (304)
T ss_pred ecccccccCCeeEEEEEEeccccccc----------CceEEEEEhhhcccccCCCCHHHHHHHHHH
Confidence 34445788888889999999999877 333333333333 23356778888877643
Done!