RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11192
(180 letters)
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 152 bits (387), Expect = 8e-47
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 6 TGPQYWGRINPE-WSLCNKGRRQSPINVDPEHLLFDPHLTELEIDK--NKVSGVLQNTGQ 62
+ + P W + RQSPIN+ D L K + +QN G
Sbjct: 11 AESSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTVQNNGH 70
Query: 63 SLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGY 122
S++ ++ +ISGG L YQ ++ + + + KGSEH + G F E+ +
Sbjct: 71 SVMMLLENKA----SISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHE 126
Query: 123 NAEL-YHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRD 171
+ N+ EAQ I ++ +++ G + N+ + + + + +
Sbjct: 127 KEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIPKPE 176
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 149 bits (378), Expect = 1e-45
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 12/166 (7%)
Query: 5 STGPQYWGRINPE-WSLCNKGRRQSPINVDPEHLLFDPHLTELEIDK--NKVSGVLQNTG 61
T + PE W K +QSPIN+ +P LT + K ++N
Sbjct: 6 QTEDPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFILVGYDQKQQWPIKNNQ 65
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
++ + I GG L RY+ + + + ND GSEH I G F E+ +
Sbjct: 66 HTVEMTLGGGA----CIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVH 121
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
S + ++ MI++G++ N + + +
Sbjct: 122 KKLT-----SSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSI 162
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 145 bits (367), Expect = 9e-44
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGV-LQNTG 61
GP +W ++ P +G RQSPIN+ ++ P L LE+ + + N G
Sbjct: 15 GQDDGPSHWHKLYP----IAQGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNG 70
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
S+ + D+ ++GGPL Y+ ++F+F +G+ +D GSEH + G SFP E+ L
Sbjct: 71 HSVQVDFN-DSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVH 129
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+NA+ Y EA P G+ + + ++ G+ + + +T V
Sbjct: 130 WNAKKYSTFGEAASAPDGLAVVGVFLETGD-EHPSMNRLTDALYMV 174
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 143 bits (362), Expect = 3e-43
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 21 CNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVS-GVLQNTGQSLVFRVDKDTKHHVNIS 79
C G RQSPIN+ + ++DP L L + + S L NTG + D D+ IS
Sbjct: 1 CATGTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYAFQVEFD-DSCEDSGIS 59
Query: 80 GGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQG 139
GGPL Y+ ++F+F +G ++ GSEH + G+++P E+ L +N+ Y N +A G
Sbjct: 60 GGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENG 119
Query: 140 IVGISLMIQLGERSNDELRIVTTNFNKV 167
+ I + ++LG + L+ + +V
Sbjct: 120 LAVIGVFLKLGA-HHQALQKLVDVLPEV 146
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 143 bits (363), Expect = 3e-43
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG-VLQNTGQSL 64
GP +W P G +QSPI + + + +D L L I + S ++ N+G S
Sbjct: 14 NGPIHWKEFFP----IADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSF 69
Query: 65 VFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNA 124
D DT++ + GGPL Y+ + + +G +D GSEH + G S+ E+ + +N+
Sbjct: 70 NVDFD-DTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNS 128
Query: 125 ELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+ Y + EA H+P G+ + + +Q+GE N +L+ +T + +
Sbjct: 129 DKYPSFVEAAHEPDGLAVLGVFLQIGE-PNSQLQKITDTLDSI 170
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 142 bits (360), Expect = 8e-43
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEID----KNKVSGVLQNTG 61
G W R++P + GR QSP+++ P+ F P L LE+ L+N G
Sbjct: 10 GGDPPWPRVSPACA----GRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNG 65
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
S+ + + ++ GP Y+ + + +G GSEH + G+ FP EI +
Sbjct: 66 HSVQLTLPPG----LEMALGPG-REYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVH 120
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRD 171
+ + + EA +P G+ ++ ++ G N + + ++
Sbjct: 121 LSTA-FARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEG 169
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 141 bits (357), Expect = 2e-42
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGV-LQNTG 61
GP+ W ++ P G QSP+++ D L + + N + + N G
Sbjct: 8 DDKNGPEQWSKLYP----IANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 63
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
S + + V + GGP + Y+ +F+F +G N+ GSEH + G + E+ +
Sbjct: 64 HSFHVNFEDNDNRSV-LKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAH 122
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+N+ Y +++EA K G+ I +++++GE +N +L+ V +
Sbjct: 123 WNSAKYSSLAEAASKADGLAVIGVLMKVGE-ANPKLQKVLDALQAI 167
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 140 bits (355), Expect = 4e-42
Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGV-LQNTG 61
GP++W + P KG RQSP+++D +DP L L + ++ + + + N G
Sbjct: 8 GKHNGPEHWHKDFP----IAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNG 63
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
+ D D++ + GGPL Y+ +F+F +G ++ +GSEH + + E+ L
Sbjct: 64 HAFNVEFD-DSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVH 122
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+N + Y + +A +P G+ + + +++G + L+ V + +
Sbjct: 123 WNTK-YGDFGKAVQQPDGLAVLGIFLKVGS-AKPGLQKVVDVLDSI 166
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 140 bits (355), Expect = 1e-41
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKV---SGVLQNTGQ 62
WG + P+ + G QSPIN++ +DP L ++ + N V + N G
Sbjct: 33 EEGVEWGLVFPDAN----GEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGH 88
Query: 63 SLVFRVDKDTKHHVNISGGPL--AYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLY 120
++ + + SGGPL + ++ E F +G+ N +GSEH ++ +FP E+ L
Sbjct: 89 TIQVILKSKSVL----SGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLI 144
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+N+ L+ ++ EA KP GI I+L +Q+G+ + L+ VT +
Sbjct: 145 HWNSTLFGSIDEAVGKPHGIAIIALFVQIGK-EHVGLKAVTEILQDI 190
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 139 bits (351), Expect = 2e-41
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI----DKNKVSGVLQ 58
+ + + WG+ ++ CN +QSPIN+D + + +L +L+ + + +
Sbjct: 11 TGALNQKNWGK---KYPTCN-SPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIH 66
Query: 59 NTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVN--DKGSEHQIHGYSFPGE 116
NTG+++ + D +SGG ++ + F +G+ N GSEH + G FP E
Sbjct: 67 NTGKTVEINLTNDY----RVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLE 122
Query: 117 IQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+Q+Y ++A+ + + EA + +S++ ++G N + + + V
Sbjct: 123 MQIYCFDADRFSSFEEAVKGKGKLRALSILFEVGTEENLDFKAIIDGVESV 173
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 139 bits (351), Expect = 2e-41
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEID-KNKVSGVLQNTG 61
+ GP +W + P KG QSPI + + + DP L + + + N G
Sbjct: 8 ASHNGPDHWHELFPNA----KGENQSPIELHTKDIRHDPSLQPWSVSYDGGSAKTILNNG 63
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
+ D DT + GGPL Y+ +F+ +G +D GSEH + G + E+ L
Sbjct: 64 HTCRVVFD-DTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVH 122
Query: 122 YNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+N + Y+ EA + GI I + +++G N E +I +K+
Sbjct: 123 WNPK-YNTFKEALKQRDGIAVIGIFLKIGH-ENGEFQIFLDALDKI 166
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 138 bits (349), Expect = 3e-41
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI----DKNKVSGVLQ 58
G +W PE G QSPIN+ + ++FDP L ++ L
Sbjct: 8 EGPHGQDHWPTSYPECG----GDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLH 63
Query: 59 NTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEI 117
N G ++ + + G L +Y + + +GQ +GSEH I+ + E+
Sbjct: 64 NNGHTVQLSLPPT------LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAEL 117
Query: 118 QLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+ Y+++ Y ++SEA KPQG+ + ++I++GE N + + +++
Sbjct: 118 HVVHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEI 167
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 138 bits (349), Expect = 4e-41
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEID----KNKVSGVLQ 58
S + GP++W + G QSPI++ H EL++D ++ ++
Sbjct: 12 SGAYGPEHWVTSSV----SCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMK 67
Query: 59 NTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEI 117
NTG+++ + D +SG L R++ E+ F +G N GSEH ++G FP E+
Sbjct: 68 NTGKTVAILLKDDY----FVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEM 123
Query: 118 QLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRD 171
Q++ YN + + + A + + I +++ Q+ R N L + V+ +
Sbjct: 124 QIFFYNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHE 177
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 138 bits (349), Expect = 4e-41
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 24 GRRQSPINVDPEHLLFDPHLTELEIDKNKVS-GVLQNTGQSLVFRVDKDTKHHVNISGGP 82
++ SPIN++ + + + L L+I N+ +QNTG+ + ISGG
Sbjct: 2 PQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVRINFKGGY-----ISGGF 56
Query: 83 LAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVG 142
L Y + +G+ +D GS H I Y + GEI L +N + Y + EA+ G++
Sbjct: 57 LPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKHDDGLII 116
Query: 143 ISLMIQLGERSNDELRIVTTNFNKV 167
IS+ +Q+ + N + + + +
Sbjct: 117 ISIFLQVLDHKNVYFQKIVNQLDSI 141
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 133 bits (336), Expect = 4e-39
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG----VLQNTG 61
G W + ++ C G QSPI++ + L +D LT LE +S +L N G
Sbjct: 10 DGENSWSK---KYPSCG-GLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNG 65
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEIQLY 120
S+ + D + L RY + + +G ND GSEH + G F E+ +
Sbjct: 66 HSVKLNLPSD------MHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIV 119
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
YN++LY + S A +K +G+ ++++I++G N + ++ V
Sbjct: 120 HYNSDLYPDASTASNKSEGLAVLAVLIEMGS-FNPSYDKIFSHLQHV 165
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 128 bits (323), Expect = 4e-37
Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 5 STGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEI---DKNKVSGVLQNTG 61
+ +W + P G+RQSPIN+ + ++P L L + + + N G
Sbjct: 10 ALDEAHWPQHYP----ACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPMVNNG 65
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND--KGSEHQIHGYSFPGEIQL 119
++ + + ++ G + Y ++ +F +G + GSEH + G EI +
Sbjct: 66 HTVQISLPSTM--RMTVADGTV---YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHI 120
Query: 120 YGYNAELYHNMSEAQHKPQGIVGISLMIQLGER-SNDELRIVTTNFNKV 167
YN++ Y + AQ P G+ ++ +++ N ++ +
Sbjct: 121 VHYNSK-YKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANI 168
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 116 bits (291), Expect = 3e-32
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 29/184 (15%)
Query: 2 FSMSTGPQYWG----RINPEWSLCNKGRRQSPINVDPEHLLFD--------PHLTELEID 49
+ W ++ C+ G QSPI+++ L+ L L +D
Sbjct: 23 YDYMQHGFDWPGLQEGGTTKYPACS-GSNQSPIDINTNQLMEPSSRSGTSAVSLNGLNVD 81
Query: 50 KNKVSGV-LQNTGQSLV----FRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGS 104
+ G+ L N L D+ + I G + +F+F + S
Sbjct: 82 GAQADGITLTNAKVDLEQGMKVTFDQPAANLPTIEIGGTTKSFVPIQFHFHHF-----LS 136
Query: 105 EHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNF 164
EH I+G +P E+ + A + I +M + E + L + T
Sbjct: 137 EHTINGIHYPLELHIVMQEQ------DPADVATAQLAVIGIMYKYSENGDAFLNSLQTQI 190
Query: 165 NKVL 168
+
Sbjct: 191 EGKI 194
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 110 bits (276), Expect = 1e-30
Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 3 SMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTGQ 62
+ P+ WG ++ E+ LC+ G+ QSP+N+ L ++++ ++N G
Sbjct: 7 TGHDSPESWGNLSEEFRLCSTGKNQSPVNITET---VSGKLPAIKVNYKPSMVDVENNGH 63
Query: 63 SLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGY 122
++ + + + ++G Y ++F+F SE+QI G +FP E
Sbjct: 64 TIQVNYP-EGGNTLTVNGR----TYTLKQFHFHV------PSENQIKGRTFPMEAHFVHL 112
Query: 123 NAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+ + + ++++ + G+ +N L +
Sbjct: 113 DEN------------KQPLVLAVLYEAGK-TNGRLSSIWNVMPMT 144
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 101 bits (253), Expect = 5e-27
Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 31/167 (18%)
Query: 5 STGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGV-LQNTGQS 63
GP W ++ C KG+ QSPI +D + + L++D G L+N G
Sbjct: 16 LGGPLNWYGLDEANEACAKGKHQSPIVIDSAAIDYAA-SGSLKLDLPLADGSKLENLGFG 74
Query: 64 LVFRVDKDTKHHVNISGGPLAY---RYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLY 120
L V ++ G L Y +F+F SEH ++ FP E+
Sbjct: 75 L----------QVTLTNGSLTANSKTYTLAQFHFHT------PSEHHVNEEHFPMEVHFV 118
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
A K +VG + S V + +
Sbjct: 119 FQTAA----------KETAVVGFFFQLSEVGDSVPLFDSVFAPIDNI 155
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 96.7 bits (240), Expect = 2e-24
Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 44/199 (22%)
Query: 2 FSMSTGPQYWGRIN--PEWSLCNKGRRQSPINVDPEHLLFDP----------HLTELEID 49
+ + W + +C GR+QSPINV +L + ++
Sbjct: 40 WDHGLNGENWEGKDGAGNAWVCKTGRKQSPINVPQYQVLDGKGSKIANGLQTQWSYPDLM 99
Query: 50 KNKVSGVLQNTGQSLVFRVDKDTKHHVNISGGPLA--------------------YRYQF 89
N S + N G ++ + + H I+ +
Sbjct: 100 SNGTSVQVINNGHTIQVQWTYNYAGHATIAIPAMHNQTNRIVDVLEMRPNDAADRVTAVP 159
Query: 90 EEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQL 149
+F+F SEH + G +P E+ + E K ++ QL
Sbjct: 160 TQFHFHST------SEHLLAGKIYPLELHIVHQVTEKL-----EACKGGCFSVTGILFQL 208
Query: 150 GE-RSNDELRIVTTNFNKV 167
N+ L + N
Sbjct: 209 DNGPDNELLEPIFANMPSR 227
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase,
flavodoxin, oligomerization, flavoprotein,
oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB:
1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Length = 174
Score = 27.6 bits (62), Expect = 1.6
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 134 QHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVV 174
++KP ++ ++ G + + +R V + +V
Sbjct: 95 KYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIPKQLV 135
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 28.0 bits (62), Expect = 1.9
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 18/118 (15%)
Query: 30 INVDPEHLLFDPHLTELEIDKNKVSGV----------------LQNTGQSLVFRVDKDTK 73
I + P L DP D+N + V L + D
Sbjct: 166 IPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDID 225
Query: 74 HHVN--ISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHN 129
H++ G + + FR +V + G + G + + E
Sbjct: 226 MHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 283
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN
PG4; 2.24A {Gluconacetobacter hansenii}
Length = 199
Score = 26.2 bits (58), Expect = 5.3
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 134 QHKPQGIVGISLMIQLGERSNDELRIVTTNFN 165
KP +V S + G R+ LR +
Sbjct: 108 AGKPVALVTASPGMIGGARAQYHLRQSLVFLD 139
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 26.8 bits (60), Expect = 5.4
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 84 AYRYQFEEFYFRYG 97
R F E Y Y
Sbjct: 702 PSRASFHELYNMYK 715
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 26.4 bits (59), Expect = 6.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 84 AYRYQFEEFYFRYG 97
A R ++ FY RY
Sbjct: 625 AGRIEYTRFYNRYK 638
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 26.4 bits (59), Expect = 6.2
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 84 AYRYQFEEFYFRYG 97
R + +F RY
Sbjct: 693 PNRIIYADFVKRYY 706
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation,
tetramer role, mutant enzymes, oxidoreductase; HET: FMN;
2.20A {Escherichia coli}
Length = 193
Score = 26.2 bits (58), Expect = 6.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 134 QHKPQGIVGISLMIQLGERSNDELRIVTTNFN 165
KP I S+ + G R LR + +
Sbjct: 107 AGKPVLIQTSSMGVIGGARCQYHLRQILVFLD 138
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 26.6 bits (58), Expect = 6.7
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 10/91 (10%)
Query: 11 WGRINPEWSLCNKGRRQSP---INVDPEHLLFDPHL-TELEIDKNKVSGVLQNTG----- 61
G IN GR + + P+ L F H+ E+ T
Sbjct: 344 QGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIE 403
Query: 62 -QSLVFRVDKDTKHHVNISGGPLAYRYQFEE 91
R D H + PL +E
Sbjct: 404 IVGCADRSCYDLSCHARATKVPLVAEKPLKE 434
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.2 bits (58), Expect = 7.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 84 AYRYQFEEFYFRYG 97
R + +F RY
Sbjct: 693 PNRIIYADFVKRYY 706
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell
WALL, AG I/II protei surface adhesin,
peptidoglycan-anchor; 2.30A {Streptococcus gordonii}
Length = 349
Score = 25.9 bits (56), Expect = 8.0
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 39 FDPHLTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHVNISGGPL 83
+ L E E K + + + QSL F+ + + ++ S
Sbjct: 21 YTAALAEAESKKKQDGYLSEPRSQSLNFKSEPNAIRTIDSSVHQY 65
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 26.0 bits (58), Expect = 8.0
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 111 YSFPGEIQLYGYNAELYHNMSE 132
Y + +Y + +L+ + E
Sbjct: 73 YLWDESAGIYEKSLKLWEQLPE 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,857,693
Number of extensions: 162143
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 38
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)