RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11192
(180 letters)
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 118 bits (295), Expect = 9e-34
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVS-GVLQNT 60
+ GP+ W ++ P G QSP+++ D L + + N + + N
Sbjct: 5 YDDKNGPEQWSKLYP----IANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINV 60
Query: 61 GQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLY 120
G S + + V + GGP + Y+ +F+F +G N+ GSEH + G + E+ +
Sbjct: 61 GHSFHVNFEDNDNRSV-LKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 119
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIV 160
+N+ Y +++EA K G+ I +++++GE + +++
Sbjct: 120 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVL 159
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 118 bits (295), Expect = 1e-33
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 6 TGPQYWGRINPE-WSLCNKGRRQSPINVDPEHLLFDPHLTELEIDK--NKVSGVLQNTGQ 62
+ + P W + RQSPIN+ D L K + +QN G
Sbjct: 7 AESSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTVQNNGH 66
Query: 63 SLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGY 122
S++ ++ + +ISGG L YQ ++ + + + KGSEH + G F E+ +
Sbjct: 67 SVMMLLE----NKASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHE 122
Query: 123 NAELYH-NMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNK 166
+ N+ EAQ I ++ +++ G + N+ + + +
Sbjct: 123 KEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSN 167
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 115 bits (288), Expect = 1e-32
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG-VLQNT 60
++ GP++W + P KG QSPI + + + DP L + + S + N
Sbjct: 6 YASHNGPEHWHELYP----IAKGDNQSPIELHTKDIRHDPSLQPWSVSYDPGSAKTILNN 61
Query: 61 GQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLY 120
G++ D DT + GGPL+ Y+ +F+ +G +D GSEH + G + E+ L
Sbjct: 62 GKTCRVVFD-DTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLV 120
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+N + Y+ EA +P GI + + +++G R E +I+ +K+
Sbjct: 121 HWNPK-YNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKI 165
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 110 bits (276), Expect = 6e-31
Identities = 41/163 (25%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG-VLQNTGQSL 64
GP++W + P KG RQSP+++D +DP L L + ++ + + N G +
Sbjct: 10 NGPEHWHKDFP----IAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNGHAF 65
Query: 65 VFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNA 124
D D++ + GGPL Y+ +F+F +G ++ +GSEH + + E+ L +N
Sbjct: 66 NVEFD-DSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNT 124
Query: 125 ELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+ Y + +A +P G+ + + +++G + L+ V + +
Sbjct: 125 K-YGDFGKAVQQPDGLAVLGIFLKVG-SAKPGLQKVVDVLDSI 165
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 110 bits (276), Expect = 6e-31
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 15/171 (8%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG----VLQNTG 61
G +W PE C G QSPIN+ + ++FDP L ++ G L N G
Sbjct: 9 HGQDHWPTSYPE---CG-GDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNG 64
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEIQLY 120
++ + + G L +Y + + +GQ +GSEH I+ + E+ +
Sbjct: 65 HTVQLSLPP------TLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVV 118
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRD 171
Y+++ Y ++SEA KPQG+ + ++I++GE N + + +++ ++D
Sbjct: 119 HYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKD 169
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 108 bits (271), Expect = 4e-30
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 2 FSMSTGPQYWGRINPE-WSLCNKGRRQSPINVDPEHLLFDPHLTELEIDK--NKVSGVLQ 58
+ + T + PE W K +QSPIN+ +P LT + K ++
Sbjct: 3 YEIQTEDPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFILVGYDQKQQWPIK 62
Query: 59 NTGQSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQ 118
N ++ + I GG L RY+ + + + ND GSEH I G F E+
Sbjct: 63 NNQHTVEMTLGGGA----CIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMH 118
Query: 119 LYGYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
+ + ++ MI++G++ N + + +
Sbjct: 119 IVHKKLTSSK-----EDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSI 162
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 104 bits (259), Expect = 1e-28
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 24 GRRQSPINVDPEHLLFDPHLTELEIDKNKVS-GVLQNTGQSLVFRVDKDTKHHVNISGGP 82
G RQSPIN+ + ++DP L L + + S L NTG + D D+ ISGGP
Sbjct: 1 GTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYAFQVEFD-DSCEDSGISGGP 59
Query: 83 LAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYGYNAELYHNMSEAQHKPQGIVG 142
L Y+ ++F+F +G ++ GSEH + G+++P E+ L +N+ Y N +A G+
Sbjct: 60 LGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGLAV 119
Query: 143 ISLMIQLGERSNDELRIVTTNFNKVLFRD 171
I + ++L + L+ + +V +D
Sbjct: 120 IGVFLKL-GAHHQALQKLVDVLPEVRHKD 147
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 98.0 bits (243), Expect = 5e-26
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 6 TGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSG----VLQNTG 61
G W + ++ C G QSPI++ + L +D LT LE +S +L N G
Sbjct: 8 DGENSWSK---KYPSCG-GLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNG 63
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVND-KGSEHQIHGYSFPGEIQLY 120
S+ + D L RY + + +G ND GSEH + G F E+ +
Sbjct: 64 HSVKLNLPSDMHI------QGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIV 117
Query: 121 GYNAELYHNMSEAQHKPQGIVGISLMIQLGERSNDELRIVTTNFNKV 167
YN++LY + S A +K +G+ ++++I++G N + ++ V
Sbjct: 118 HYNSDLYPDASTASNKSEGLAVLAVLIEMGS-FNPSYDKIFSHLQHV 163
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 74.5 bits (182), Expect = 2e-17
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 2 FSMSTGPQYWGRINPEWSLCNKGRRQSPINVDPEHLLFDPHLTELEIDKNKVSGVLQNTG 61
++ P+ WG ++ E+ LC+ G+ QSP+N+ L ++++ ++N G
Sbjct: 6 YTGHDSPESWGNLSEEFRLCSTGKNQSPVNITET---VSGKLPAIKVNYKPSMVDVENNG 62
Query: 62 QSLVFRVDKDTKHHVNISGGPLAYRYQFEEFYFRYGQVNDKGSEHQIHGYSFPGEIQLYG 121
++ + + + ++G Y ++F+F SE+QI G +FP E
Sbjct: 63 HTIQVNYP-EGGNTLTVNGR----TYTLKQFHFHV------PSENQIKGRTFPMEAHFVH 111
Query: 122 YNAELYH 128
+
Sbjct: 112 LDENKQP 118
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 28.8 bits (64), Expect = 0.32
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 43 LTELEIDKNKVSGVLQNTGQSLVFRVDKDTKHHV 76
L ELE KN+ + + + Q+LV+ ++ + +
Sbjct: 25 LAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSL 58
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 25.9 bits (57), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 115 GEIQLYGYNAELYHNMSEAQHKPQGIVGISLMIQLGE 151
G + L+ A++ +N SEA H G++G+ + I GE
Sbjct: 65 GRVPLHTLRADIDYNTSEA-HTTYGVIGVKVWIFKGE 100
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis
[TaxId: 1423]}
Length = 171
Score = 25.5 bits (55), Expect = 3.4
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 134 QHKPQGIVGISLMIQLGERSNDELRIVTTNFNKVLFRDFVV 174
++KP ++ ++ + G + + +R V + +V
Sbjct: 95 KYKPVALLAVAGGGKGGINALNNMRTVMRGVYANVIPKQLV 135
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 24.7 bits (53), Expect = 8.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 76 VNISGGPLAYRYQFEEFYFRYG 97
V + A R ++ FY RY
Sbjct: 609 VRVRRAGFAGRIEYTRFYNRYK 630
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 24.3 bits (52), Expect = 9.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 76 VNISGGPLAYRYQFEEFYFRYG 97
+ I R F+EF RY
Sbjct: 635 IRICRQGFPNRIVFQEFRQRYE 656
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 701,983
Number of extensions: 31442
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 22
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)