BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11193
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BL2|A Chain A, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|B Chain B, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|C Chain C, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|D Chain D, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|E Chain E, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|F Chain F, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|G Chain G, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|H Chain H, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|I Chain I, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2BL2|J Chain J, The Membrane Rotor Of The V-Type Atpase From Enterococcus
Hirae
pdb|2CYD|A Chain A, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|B Chain B, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|C Chain C, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|D Chain D, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|E Chain E, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|F Chain F, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|G Chain G, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|H Chain H, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|I Chain I, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2CYD|J Chain J, Crystal Structure Of Lithium Bound Rotor Ring Of The
V-Atpase From Enterococcus Hirae
pdb|2DB4|A Chain A, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|B Chain B, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|C Chain C, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|D Chain D, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|E Chain E, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|F Chain F, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|G Chain G, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|H Chain H, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|I Chain I, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|2DB4|J Chain J, Crystal Structure Of Rotor Ring With Dccd Of The V- Atpase
From Enterococcus Hirae
pdb|3AOU|A Chain A, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|B Chain B, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|C Chain C, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|D Chain D, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|E Chain E, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|F Chain F, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|G Chain G, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|H Chain H, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|I Chain I, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
pdb|3AOU|J Chain J, Structure Of The Na+ Unbound Rotor Ring Modified With N,N
F- Dicyclohexylcarbodiimide Of The Na+-Transporting
V-Atpase
Length = 156
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 25 MSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 84
++ +PE +++I ++ G +YG V+A LI + +G LGA L + F
Sbjct: 44 LTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIF--INLGSDMSVVQGLNFLGASLPIAF 101
Query: 85 SGLAAGFAIGIVGDAGVRGTAQQPR 109
+GL +G A G V AG++ A++P
Sbjct: 102 TGLFSGIAQGKVAAAGIQILAKKPE 126
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 84 FSGLAAGFAIGIVGDAGVRGTAQQPRLFVXXXXXXXXXXXXXXXXXMSVMRPELIMKSII 143
FSG+ + +G+ G+A T QP F +++I
Sbjct: 25 FSGIGSAKGVGMTGEAAAALTTSQPEKF---------------------------GQALI 57
Query: 144 PVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGD 203
++ G +YG V+A LI + +G LGA L + F+GL +G A G V
Sbjct: 58 LQLLPGTQGLYGFVIAFLIF--INLGSDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAA 115
Query: 204 AGVRGTAQQPR 214
AG++ A++P
Sbjct: 116 AGIQILAKKPE 126
>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) From Geobacillus Kaustophilus Hta426
pdb|2QQ3|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|B Chain B, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|C Chain C, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|D Chain D, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|E Chain E, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|F Chain F, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|G Chain G, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|H Chain H, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|I Chain I, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|J Chain J, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|K Chain K, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
pdb|2QQ3|L Chain L, Crystal Structure Of Enoyl-Coa Hydrates Subunit I
(Gk_2039) Other Form From Geobacillus Kaustophilus
Hta426
Length = 258
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 27 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKG 72
V+ PEL+M+ + +AG +A + LI AVQ+ V YP Y+G
Sbjct: 180 VVSPELLMEETM--RLAGRLAEQPPLALRLIKEAVQKAVDYPLYEG 223
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 132 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKG 177
V+ PEL+M+ + +AG +A + LI AVQ+ V YP Y+G
Sbjct: 180 VVSPELLMEETM--RLAGRLAEQPPLALRLIKEAVQKAVDYPLYEG 223
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 243 TFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKK 283
TFEYL ++ L + L P N+I +Q + V D FAK+ K
Sbjct: 153 TFEYLHSLDLIYRDLKPENLIIDQQG-YIQVTDFGFAKRVK 192
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 214 RLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHCLFPSNIIYNQSHEFSWV 273
+F + I FAE ++ + I TFEYL ++ L + L P N++ +Q + V
Sbjct: 127 EMFSHLRRIGRFAEPHARFYAAQI---VLTFEYLHSLDLIYRDLKPENLLIDQQG-YIQV 182
Query: 274 RDRHFAKKKK 283
D FAK+ K
Sbjct: 183 TDFGFAKRVK 192
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 243 TFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKK 283
TFEYL ++ L + L P N++ +Q + V D FAK+ K
Sbjct: 174 TFEYLHSLDLIYRDLKPENLLIDQQG-YIQVTDFGFAKRVK 213
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 243 TFEYLLAISLFFHCLFPSNIIYNQSHEFSWVRDRHFAKKKK 283
TFEYL ++ L + L P N++ +Q + V D FAK+ K
Sbjct: 174 TFEYLHSLDLIYRDLKPENLLIDQQG-YIQVTDFGFAKRVK 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,229,549
Number of Sequences: 62578
Number of extensions: 310001
Number of successful extensions: 859
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 82
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)