Query psy11193
Match_columns 340
No_of_seqs 244 out of 1289
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 20:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06271 V-type ATP synthase s 100.0 5.2E-41 1.1E-45 309.6 24.2 201 3-241 8-208 (213)
2 PRK06558 V-type ATP synthase s 100.0 9.5E-31 2.1E-35 232.2 17.5 146 71-245 14-159 (159)
3 PRK06558 V-type ATP synthase s 100.0 9.6E-29 2.1E-33 219.5 16.1 135 3-166 24-158 (159)
4 PRK06649 V-type ATP synthase s 100.0 5.6E-29 1.2E-33 217.5 13.3 127 2-162 10-141 (143)
5 PRK09621 V-type ATP synthase s 100.0 3.1E-28 6.6E-33 212.6 14.7 130 2-162 11-140 (141)
6 PRK08344 V-type ATP synthase s 100.0 1.3E-27 2.8E-32 211.8 17.2 143 73-242 2-154 (157)
7 PRK09621 V-type ATP synthase s 100.0 4.9E-27 1.1E-31 205.1 17.1 137 73-240 4-140 (141)
8 PRK08344 V-type ATP synthase s 99.9 3.7E-27 7.9E-32 209.0 15.4 137 2-165 9-155 (157)
9 PRK14893 V-type ATP synthase s 99.9 1E-26 2.3E-31 206.9 18.1 147 68-241 5-154 (161)
10 PRK06649 V-type ATP synthase s 99.9 7.1E-25 1.5E-29 191.8 16.3 140 73-241 3-142 (143)
11 TIGR01100 V_ATP_synt_C vacuola 99.9 7.3E-26 1.6E-30 190.0 9.0 99 2-100 9-107 (108)
12 PRK06271 V-type ATP synthase s 99.9 1.8E-24 3.8E-29 200.0 16.5 135 75-243 2-136 (213)
13 KOG0233|consensus 99.9 6.4E-26 1.4E-30 203.3 5.4 133 111-243 53-191 (196)
14 KOG0232|consensus 99.9 2.9E-25 6.2E-30 195.5 8.9 135 108-242 17-152 (156)
15 PRK14893 V-type ATP synthase s 99.9 6.3E-24 1.4E-28 189.1 15.7 135 3-164 18-155 (161)
16 KOG0232|consensus 99.9 3.4E-24 7.3E-29 188.8 8.2 138 1-165 15-153 (156)
17 TIGR01100 V_ATP_synt_C vacuola 99.9 9.7E-22 2.1E-26 165.1 7.6 96 110-205 12-107 (108)
18 KOG0233|consensus 99.8 5.3E-22 1.1E-26 178.2 3.3 140 2-168 49-194 (196)
19 COG0636 AtpE F0F1-type ATP syn 99.6 1.3E-14 2.8E-19 116.0 8.9 70 176-245 6-79 (79)
20 PF00137 ATP-synt_C: ATP synth 99.5 6.9E-14 1.5E-18 107.4 9.1 65 178-242 1-65 (66)
21 CHL00061 atpH ATP synthase CF0 99.5 7.4E-14 1.6E-18 112.2 8.7 73 174-246 4-80 (81)
22 PRK06251 V-type ATP synthase s 99.5 3.1E-13 6.7E-18 112.9 11.0 70 172-241 29-98 (102)
23 TIGR03322 alt_F1F0_F0_C altern 99.5 2.5E-13 5.4E-18 110.4 9.0 76 172-247 3-82 (86)
24 PRK07354 F0F1 ATP synthase sub 99.5 3E-13 6.4E-18 108.6 9.0 70 174-243 4-77 (81)
25 PRK13468 F0F1 ATP synthase sub 99.4 3.6E-13 7.7E-18 108.6 8.8 74 173-246 3-80 (82)
26 PRK06876 F0F1 ATP synthase sub 99.4 5.1E-13 1.1E-17 106.8 8.9 70 174-243 3-76 (78)
27 COG0636 AtpE F0F1-type ATP syn 99.4 6.4E-13 1.4E-17 106.2 8.7 72 71-165 6-77 (79)
28 PRK13469 F0F1 ATP synthase sub 99.4 1.2E-12 2.6E-17 104.7 8.8 67 174-241 6-76 (79)
29 PRK13471 F0F1 ATP synthase sub 99.4 1.6E-12 3.5E-17 105.5 8.8 68 174-241 11-82 (85)
30 PF00137 ATP-synt_C: ATP synth 99.4 3.7E-12 8.1E-17 97.8 8.7 66 73-165 1-66 (66)
31 PRK08482 F0F1 ATP synthase sub 99.3 4.1E-12 8.9E-17 106.7 8.7 74 173-246 26-103 (105)
32 PRK07558 F0F1 ATP synthase sub 99.3 5.8E-12 1.3E-16 99.8 8.7 66 175-241 3-72 (74)
33 PRK13464 F0F1 ATP synthase sub 99.3 5.9E-12 1.3E-16 105.0 9.1 72 176-247 12-87 (101)
34 CHL00061 atpH ATP synthase CF0 99.3 6.8E-12 1.5E-16 100.9 8.9 73 70-165 5-77 (81)
35 PRK07354 F0F1 ATP synthase sub 99.3 7.3E-12 1.6E-16 100.6 8.6 74 69-165 4-77 (81)
36 MTH00222 ATP9 ATP synthase F0 99.3 2.3E-11 5E-16 97.1 8.5 67 174-241 4-74 (77)
37 PRK07159 F0F1 ATP synthase sub 99.3 4.7E-11 1E-15 99.5 10.6 63 178-241 31-97 (100)
38 PRK13468 F0F1 ATP synthase sub 99.3 2.5E-11 5.4E-16 97.9 8.6 75 68-165 3-77 (82)
39 PRK13469 F0F1 ATP synthase sub 99.3 2.8E-11 6E-16 96.9 8.6 72 69-164 6-77 (79)
40 PRK06876 F0F1 ATP synthase sub 99.2 3.3E-11 7.1E-16 96.4 8.8 73 70-165 4-76 (78)
41 TIGR03322 alt_F1F0_F0_C altern 99.2 2.4E-11 5.2E-16 98.8 8.2 74 69-165 5-78 (86)
42 PRK13471 F0F1 ATP synthase sub 99.2 4.5E-11 9.8E-16 97.0 8.7 74 69-165 11-84 (85)
43 PRK13466 F0F1 ATP synthase sub 99.2 4.7E-11 1E-15 92.9 7.9 58 183-240 4-65 (66)
44 PRK06251 V-type ATP synthase s 99.2 9.3E-11 2E-15 98.1 9.9 69 69-164 31-99 (102)
45 PRK13467 F0F1 ATP synthase sub 99.2 6.5E-11 1.4E-15 92.1 7.7 56 185-240 6-65 (66)
46 PRK05880 F0F1 ATP synthase sub 99.2 1E-10 2.2E-15 94.3 8.9 68 174-241 4-75 (81)
47 PRK07874 F0F1 ATP synthase sub 99.1 2.5E-10 5.4E-15 91.8 7.9 64 172-239 12-79 (80)
48 PRK08482 F0F1 ATP synthase sub 99.1 3.3E-10 7.2E-15 95.2 8.4 74 69-165 27-100 (105)
49 PRK07558 F0F1 ATP synthase sub 99.1 4.2E-10 9.2E-15 89.3 8.0 70 71-164 4-73 (74)
50 TIGR01260 ATP_synt_c ATP synth 99.1 2.5E-10 5.4E-15 86.7 6.0 51 191-241 2-56 (58)
51 MTH00222 ATP9 ATP synthase F0 99.0 7.5E-10 1.6E-14 88.5 8.1 73 69-165 4-76 (77)
52 PRK13464 F0F1 ATP synthase sub 99.0 9.4E-10 2E-14 91.9 8.2 72 71-165 12-83 (101)
53 PRK07159 F0F1 ATP synthase sub 99.0 9.7E-10 2.1E-14 91.8 7.8 70 71-164 29-98 (100)
54 PRK05880 F0F1 ATP synthase sub 99.0 2.1E-09 4.5E-14 86.7 8.5 74 69-165 4-77 (81)
55 PRK13466 F0F1 ATP synthase sub 99.0 1.5E-09 3.2E-14 84.5 6.9 61 79-162 5-65 (66)
56 PRK13467 F0F1 ATP synthase sub 98.9 3.2E-09 6.9E-14 82.7 6.8 60 80-162 6-65 (66)
57 PRK07874 F0F1 ATP synthase sub 98.8 1E-08 2.2E-13 82.6 7.1 66 69-161 14-79 (80)
58 TIGR01260 ATP_synt_c ATP synth 98.7 1.7E-08 3.6E-13 76.7 5.0 56 86-164 2-57 (58)
59 KOG3025|consensus 97.4 0.00036 7.8E-09 60.4 5.8 68 173-241 63-134 (137)
60 KOG3025|consensus 96.1 0.011 2.3E-07 51.4 5.1 72 69-164 64-135 (137)
61 PF10777 YlaC: Inner membrane 53.8 38 0.00083 30.9 5.9 50 257-320 79-139 (155)
62 COG2718 Uncharacterized conser 38.1 15 0.00032 38.1 1.0 47 275-332 231-281 (423)
63 TIGR02877 spore_yhbH sporulati 34.2 23 0.0005 36.3 1.7 32 302-333 203-238 (371)
64 PF14372 DUF4413: Domain of un 34.2 55 0.0012 26.9 3.7 37 287-323 5-46 (101)
65 PRK05325 hypothetical protein; 32.3 26 0.00056 36.3 1.7 32 302-333 223-258 (401)
66 PF10346 Con-6: Conidiation pr 23.8 38 0.00082 23.9 0.8 14 280-293 8-21 (36)
67 PF04284 DUF441: Protein of un 22.6 1.5E+02 0.0033 26.7 4.5 40 187-226 79-118 (140)
68 PF04285 DUF444: Protein of un 22.5 50 0.0011 34.4 1.7 31 302-332 247-281 (421)
No 1
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=5.2e-41 Score=309.55 Aligned_cols=201 Identities=29% Similarity=0.451 Sum_probs=188.3
Q ss_pred chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHHH
Q psy11193 3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV 82 (340)
Q Consensus 3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~v 82 (340)
+++++++|+++|+++++.+.+++..||||.++|++++.++||+++|||+++++++..+.++ .++|.++++||++
T Consensus 8 a~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~------~~g~~~lgagL~v 81 (213)
T PRK06271 8 AVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT------APEWAMLAAGLAV 81 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------HhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999987532 4799999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11193 83 GFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 162 (340)
Q Consensus 83 Gla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili 162 (340)
|++++ |+++||++|++++++++ ++||.++|+++..+|+|+++|||+|+++++
T Consensus 82 Gla~~-sa~g~G~~g~a~~~a~a---------------------------~~p~~f~~~li~~~~~E~~aiyGlIva~ll 133 (213)
T PRK06271 82 GLAGL-SAIGQGIAASAGLGAVA---------------------------EDDSIFGKAMVFSVLPETQAIYGLLVAILL 133 (213)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHh---------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999999999988887 589999999999999999999999999999
Q ss_pred HhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 163 SGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 163 ~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
..++.++ +..+++.++++||++|++++ ||++||+++++++++++||||.++|+++..+++|+++||++++++++.
T Consensus 134 ~~~~~~~---~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~ 208 (213)
T PRK06271 134 LVGVFAS---PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIM 208 (213)
T ss_pred HHhccCc---chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876542 45679999999999999999 999999999999999999999999999999999999999999999866
No 2
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=9.5e-31 Score=232.25 Aligned_cols=146 Identities=25% Similarity=0.380 Sum_probs=137.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
..+.++++++++|+++++|+++||+++.+++++.+ ++||.++|.+++.+++|+
T Consensus 14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a---------------------------~~Pe~~~k~lI~~~l~e~ 66 (159)
T PRK06558 14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLT---------------------------EEPEKFGKALILQLLPGT 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------cCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999877776 589999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q psy11193 151 IAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 230 (340)
Q Consensus 151 laIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalA 230 (340)
++|||+++++++..+++++ +++.+++.++++||++|+++++||++||+++++++++++||||+|+|+++..+|+|+++
T Consensus 67 ~aIyGlvva~li~~~i~~~--~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~a 144 (159)
T PRK06558 67 QGLYGFVIGFLIWQKITPE--LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYA 144 (159)
T ss_pred HHHHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999988653 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchH
Q psy11193 231 PYFLSLIKSCTTTFE 245 (340)
Q Consensus 231 IyGLVvaill~~~f~ 245 (340)
||||++++++...+|
T Consensus 145 I~glvvaill~~~~~ 159 (159)
T PRK06558 145 ILAFVVSFLLLNGVK 159 (159)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999876554
No 3
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=9.6e-29 Score=219.45 Aligned_cols=135 Identities=30% Similarity=0.449 Sum_probs=127.3
Q ss_pred chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHHH
Q psy11193 3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV 82 (340)
Q Consensus 3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~v 82 (340)
+++++++||+||++++|.+.+++..||||.++|.+++++|||+|+||||++++++..++++ ++++.+++.++++||++
T Consensus 24 aigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~--~~~~~~g~~~l~agL~v 101 (159)
T PRK06558 24 AVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP--ELSLAQGLAYFAACLPI 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999864 37789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11193 83 GFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 162 (340)
Q Consensus 83 Gla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili 162 (340)
|+++++||++||+++++++++++| +||.+.|+++..+|+|+++|||||+++++
T Consensus 102 Gl~~l~sgi~~G~~~a~~~~a~a~---------------------------~pe~~~~~li~~~~~E~~aI~glvvaill 154 (159)
T PRK06558 102 AIVGLFSAISQGKVAAAGIQILAK---------------------------RPEEFTKGIILAAMVETYAILAFVVSFLL 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 77788899999999999999999999998
Q ss_pred HhcC
Q psy11193 163 SGAV 166 (340)
Q Consensus 163 ~~~i 166 (340)
..++
T Consensus 155 ~~~~ 158 (159)
T PRK06558 155 LNGV 158 (159)
T ss_pred hccC
Confidence 8764
No 4
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=5.6e-29 Score=217.49 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=120.3
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhc-----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVM-----RPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHL 76 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~-----~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l 76 (340)
.+++|+++|||||++++|++++|++.| +||+|. .++++.+|+||+|||||++++++. ++++.+++.+|
T Consensus 10 ~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~------~~s~~~g~~~l 82 (143)
T PRK06649 10 AALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG------VMSQTNPWLLL 82 (143)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh------hhhhhhHHHHH
Confidence 478899999999999999999999998 999998 999999999999999999999987 35688999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHH
Q psy11193 77 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGL 156 (340)
Q Consensus 77 ~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGL 156 (340)
++||++|++++.||+.||+++++++++++ ++||.++|.++..+|+|+++||+|
T Consensus 83 ~aGL~vGl~gl~Sa~~qG~v~aagi~~~a---------------------------k~p~~f~~~ii~~~~~Et~Al~~l 135 (143)
T PRK06649 83 GAGIGGGLAIAASAFAQGKAAAGACDALA---------------------------ETGKGFANYLLVLGLIETVALFVM 135 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 589999999999999999999999
Q ss_pred HHHHHH
Q psy11193 157 VVAVLI 162 (340)
Q Consensus 157 Iiaili 162 (340)
++++++
T Consensus 136 v~s~~~ 141 (143)
T PRK06649 136 VFLMIF 141 (143)
T ss_pred HHHHHH
Confidence 999876
No 5
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.96 E-value=3.1e-28 Score=212.62 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=122.2
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA 81 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~ 81 (340)
.+++++++||+||++++|++.+|++.|+||+++|.++.+++|+||+|||||++++++.+++++ ..+++..+++||+
T Consensus 11 ~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~----~~~~~~~l~aGL~ 86 (141)
T PRK09621 11 LAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG----KLSALSGIAIGIS 86 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc----hhHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988652 3589999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11193 82 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 161 (340)
Q Consensus 82 vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiail 161 (340)
+|+++++||++||+++++++++++| +||.+.|.++...++|+++||+++++++
T Consensus 87 vGla~l~sgigqG~v~a~~i~a~ar---------------------------qPe~~~k~~i~~alvE~~ai~~lv~a~l 139 (141)
T PRK09621 87 VGIALLLSAIMQGKCCASAIQAYAR---------------------------SSEIYGKSFAAIGIVESFALFAFVFALL 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 7778888999999999999999999998
Q ss_pred H
Q psy11193 162 I 162 (340)
Q Consensus 162 i 162 (340)
+
T Consensus 140 l 140 (141)
T PRK09621 140 L 140 (141)
T ss_pred h
Confidence 6
No 6
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.95 E-value=1.3e-27 Score=211.84 Aligned_cols=143 Identities=29% Similarity=0.482 Sum_probs=129.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA 152 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala 152 (340)
|..+++++++|+++++|++++|++|++++++.+ ++||.++|++++..++|+++
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~---------------------------~~P~~~~~~li~~a~~~t~~ 54 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVA---------------------------EDEKNFRNALILAGLPMTQT 54 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hCHHHHHHHHHHHHHHHHhH
Confidence 678999999999999999999999999877776 68999999999999999999
Q ss_pred HHHHHHHHHHHhc---C------CCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCc-chhHHHHHH
Q psy11193 153 IYGLVVAVLISGA---V------QEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILI 222 (340)
Q Consensus 153 IYGLIiaili~~~---i------~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqP-elf~kmlI~ 222 (340)
|||+|+++++... . ++++.+++.+++.++++||++|+++++||++||+++++++++++||| |+|+++++.
T Consensus 55 IYGlvi~~~i~~~~~~~~~~~~~~~~~~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~ 134 (157)
T PRK08344 55 IYGLITLFLILMYAGILGGGFKFAEPDTINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIIL 134 (157)
T ss_pred HHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999998765322 2 12235678899999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy11193 223 LIFAEVLGPYFLSLIKSCTT 242 (340)
Q Consensus 223 ~af~EalAIyGLVvaill~~ 242 (340)
.+|+|+++||+|++++++.+
T Consensus 135 ~a~~Ea~ai~~lvvallll~ 154 (157)
T PRK08344 135 AAYAELMGIFGLVFAILGLS 154 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 7
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.95 E-value=4.9e-27 Score=205.09 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=127.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA 152 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala 152 (340)
+.++++++++|+++++|+++++++|++++.+.. ++||.+.|.++..++||+++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~---------------------------e~p~~~~~~~i~~~lP~tq~ 56 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMS---------------------------RIDEGHGKIIGLSAMPSSQS 56 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------cCchhhhhHHHHHHhHHHHH
Confidence 567899999999999999999999998766654 69999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q psy11193 153 IYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232 (340)
Q Consensus 153 IYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIy 232 (340)
|||+|+++++.+++++. ..+++..+++||++|+++++||++||+++++++++++||||.|+|+++..+++|+++||
T Consensus 57 IYG~ii~~li~~~~~~~----~~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~ 132 (141)
T PRK09621 57 IYGLILMLLLNDAIKDG----KLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALF 132 (141)
T ss_pred HHHHHHHHHHHHHcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887643 46789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy11193 233 FLSLIKSC 240 (340)
Q Consensus 233 GLVvaill 240 (340)
+|++++++
T Consensus 133 ~lv~a~ll 140 (141)
T PRK09621 133 AFVFALLL 140 (141)
T ss_pred HHHHHHHh
Confidence 99999875
No 8
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.95 E-value=3.7e-27 Score=209.00 Aligned_cols=137 Identities=26% Similarity=0.366 Sum_probs=123.3
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---c------CCCCccchhhH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA---V------QEPVKYPAYKG 72 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~---i------~~~~~~~~~~g 72 (340)
.+++++++||+||++++|++++++..||||.++|+++++++||||+|||||++|++... + ++++++++.++
T Consensus 9 la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~~~~l~~g 88 (157)
T PRK08344 9 LAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPDTINLGKA 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccccccchhHHHH
Confidence 36789999999999999999999999999999999999999999999999998777432 2 11234677899
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccch-hhhhhHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP-ELIMKSIIPVVMAGII 151 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P-~i~~k~II~~if~Eal 151 (340)
+.++++||++|+++++||++||+++++++++++| +| |+++|+++..+|+|++
T Consensus 89 ~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar---------------------------~P~~l~~~~ii~~a~~Ea~ 141 (157)
T PRK08344 89 LALLGAGLLVGLAELLSAIPQGIICASGIGALPR---------------------------TPGKTFTQTIILAAYAELM 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------CcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 66 8899999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy11193 152 AIYGLVVAVLISGA 165 (340)
Q Consensus 152 aIYGLIiaili~~~ 165 (340)
+||++++++++.+-
T Consensus 142 ai~~lvvallll~~ 155 (157)
T PRK08344 142 GIFGLVFAILGLSL 155 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997654
No 9
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.95 E-value=1e-26 Score=206.88 Aligned_cols=147 Identities=27% Similarity=0.480 Sum_probs=134.3
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHH
Q psy11193 68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVM 147 (340)
Q Consensus 68 ~~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if 147 (340)
+...++..+++++++|++++++|+++|+++.+++++++| |||.+.+++++.++
T Consensus 5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar---------------------------~Pe~~~~~li~~al 57 (161)
T PRK14893 5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAE---------------------------DSDMFARGIIFSAL 57 (161)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------CchHHHHHHHHHHH
Confidence 455789999999999999999999999999999999885 66677889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC---CCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Q psy11193 148 AGIIAIYGLVVAVLISGAVQE---PVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 224 (340)
Q Consensus 148 ~EalaIYGLIiaili~~~i~~---~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~a 224 (340)
+|+++|||+++++++..+.+. ++..++.+++.++++||++|+++++||++||+++++++++++||||.|++++++.+
T Consensus 58 ~Ea~aIyglvia~lll~~~~~~~~~~~~~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~a 137 (161)
T PRK14893 58 PETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSA 137 (161)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999998774322 23567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy11193 225 FAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 225 f~EalAIyGLVvaill~ 241 (340)
++|+++||||++++++.
T Consensus 138 l~Et~~Iyglvv~~lll 154 (161)
T PRK14893 138 LPETQAIYGFLIAILLM 154 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 10
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.93 E-value=7.1e-25 Score=191.77 Aligned_cols=140 Identities=21% Similarity=0.319 Sum_probs=124.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA 152 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala 152 (340)
+.++++++++++++++|++++|++|.+++..+.++-. ..+||.+. .++....|.+++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~----------------------~~~p~~f~-~lvl~~lP~Tqg 59 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYM----------------------QGKPAPFL-LIVFVGAPLTQT 59 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhh----------------------cCCchHHH-HHHHHhchhHHH
Confidence 5689999999999999999999999977666542000 02788777 888888899999
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q psy11193 153 IYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232 (340)
Q Consensus 153 IYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIy 232 (340)
|||+|+++++.. +++..+++.++++||++|++++.||+.||+++++++++++||||.|+++++..+|+|++|||
T Consensus 60 iYG~vi~~~i~~------~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~ 133 (143)
T PRK06649 60 IYGYILMNTLLG------VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALF 133 (143)
T ss_pred HHHHHHHHHHHh------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 26788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy11193 233 FLSLIKSCT 241 (340)
Q Consensus 233 GLVvaill~ 241 (340)
+||+++++.
T Consensus 134 ~lv~s~~~~ 142 (143)
T PRK06649 134 VMVFLMIFK 142 (143)
T ss_pred HHHHHHHHh
Confidence 999998763
No 11
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.93 E-value=7.3e-26 Score=189.98 Aligned_cols=99 Identities=81% Similarity=1.230 Sum_probs=94.1
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA 81 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~ 81 (340)
.+++|+++|||||++++|.+.+++..++||+++|+++|++|||+|+|||||++++++.++++++++++++|+.+|++||+
T Consensus 9 ~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~~~s~~~g~~~~~aGL~ 88 (108)
T TIGR01100 9 AALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKSNYSLYKGFIHLGAGLA 88 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999977656889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy11193 82 VGFSGLAAGFAIGIVGDAG 100 (340)
Q Consensus 82 vGla~l~SGi~~G~~g~a~ 100 (340)
+|++++.||++||++|+++
T Consensus 89 vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 89 VGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred HHHHHHHHHhhccccccCC
Confidence 9999999999999999975
No 12
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.92 E-value=1.8e-24 Score=199.97 Aligned_cols=135 Identities=30% Similarity=0.491 Sum_probs=125.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHH
Q psy11193 75 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 154 (340)
Q Consensus 75 ~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIY 154 (340)
.+++|+++|++++++|+++|.++.+++++++| |||.+.|++++.+++|+++||
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar---------------------------~Pe~~~~~li~~al~e~~~Iy 54 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAE---------------------------DPNKFGTAIVFQALPQTQGLY 54 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999885 777888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHH
Q psy11193 155 GLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFL 234 (340)
Q Consensus 155 GLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGL 234 (340)
|+++++++..+.++ .++|.++++||++|++++ |+++||+++++++++++||||.|+|+++.++++|+++||||
T Consensus 55 glvia~ll~~~~~~------~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGl 127 (213)
T PRK06271 55 GFLVAILILFVFKT------APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGL 127 (213)
T ss_pred HHHHHHHHHhhccc------HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887532 378999999999999999 88999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy11193 235 SLIKSCTTT 243 (340)
Q Consensus 235 Vvaill~~~ 243 (340)
++++++...
T Consensus 128 Iva~ll~~~ 136 (213)
T PRK06271 128 LVAILLLVG 136 (213)
T ss_pred HHHHHHHHh
Confidence 999987753
No 13
>KOG0233|consensus
Probab=99.92 E-value=6.4e-26 Score=203.34 Aligned_cols=133 Identities=31% Similarity=0.599 Sum_probs=125.1
Q ss_pred hhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------ccchhhhHHHHhhh
Q psy11193 111 FVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPV------KYPAYKGFIHLGAG 184 (340)
Q Consensus 111 ~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~------~~s~~~g~~~lgAG 184 (340)
++.+|++||+...|.++.++++|.|++.+|+++.++|||+++|||||+++++.+|+++.+ ..++.+|+..|++|
T Consensus 53 lSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~n~~~gy~lF~aG 132 (196)
T KOG0233|consen 53 LSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQNLYTGYALFGAG 132 (196)
T ss_pred hhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccchhhhhHHHhhhh
Confidence 567789999999999999999999999999999999999999999999999999887642 35788999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193 185 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTTT 243 (340)
Q Consensus 185 LavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~~ 243 (340)
+.+|++++.+|++.|++|+.+..++|+||.+|+|.+++++|+.+++|||+++++++.++
T Consensus 133 l~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~K 191 (196)
T KOG0233|consen 133 LIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSK 191 (196)
T ss_pred HHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999988753
No 14
>KOG0232|consensus
Probab=99.92 E-value=2.9e-25 Score=195.53 Aligned_cols=135 Identities=75% Similarity=1.097 Sum_probs=129.3
Q ss_pred chhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cchhhhHHHHhhhHH
Q psy11193 108 PRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK-YPAYKGFIHLGAGLA 186 (340)
Q Consensus 108 ~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~~-~s~~~g~~~lgAGLa 186 (340)
+++|+.+|++|||+|+|.+|+++++++||+.+|+++|++|+...+|||++++.++..++++..+ +++.+|+.++++|+.
T Consensus 17 a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~~~l~~g~i~lsagl~ 96 (156)
T KOG0232|consen 17 AMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTAYSLFTGFIVLSAGLA 96 (156)
T ss_pred HHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccccchhhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999887633 789999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193 187 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTT 242 (340)
Q Consensus 187 vGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~ 242 (340)
+|++++.+|+++|+++.++++..+|||++|..|++.++|.|.+++|||++++.+.+
T Consensus 97 vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~ 152 (156)
T KOG0232|consen 97 VGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLT 152 (156)
T ss_pred hhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999998764
No 15
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.91 E-value=6.3e-24 Score=189.12 Aligned_cols=135 Identities=26% Similarity=0.474 Sum_probs=123.2
Q ss_pred chhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccchhhHHHHHHhH
Q psy11193 3 SLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV---QEPVKYPAYKGFIHLGAG 79 (340)
Q Consensus 3 a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i---~~~~~~~~~~g~~~l~Ag 79 (340)
+++++++|+++|+++++.+.+++..||||.++|++++.++||+|+|||+++++++..+. ++++.+++.+++.++++|
T Consensus 18 a~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~~~~~~~~~lgag 97 (161)
T PRK14893 18 AVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAG 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998743 223456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193 80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159 (340)
Q Consensus 80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia 159 (340)
|++|+++++||++||+++++++++++| +||.+.|.++..+++|+++||||+++
T Consensus 98 L~~Gla~~gsgig~G~~~~a~i~~iar---------------------------~Pe~~~~~li~~al~Et~~Iyglvv~ 150 (161)
T PRK14893 98 AAIGFAGLGSGMGQGIASASSVGAVVE---------------------------DPDMFARGIIFSALPETQAIYGFLIA 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 77778889999999999999999999
Q ss_pred HHHHh
Q psy11193 160 VLISG 164 (340)
Q Consensus 160 ili~~ 164 (340)
+++..
T Consensus 151 ~lll~ 155 (161)
T PRK14893 151 ILLMV 155 (161)
T ss_pred HHHHH
Confidence 98754
No 16
>KOG0232|consensus
Probab=99.90 E-value=3.4e-24 Score=188.80 Aligned_cols=138 Identities=64% Similarity=1.014 Sum_probs=128.1
Q ss_pred CcchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhHHHHHHhH
Q psy11193 1 MSSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK-YPAYKGFIHLGAG 79 (340)
Q Consensus 1 ~~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~-~~~~~g~~~l~Ag 79 (340)
++++.++++|++|||.++|.+++.+..++||+.+|+++|++|++..+|||+++++++..++++..+ |++++|+.++++|
T Consensus 15 ~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~~~l~~g~i~lsag 94 (156)
T KOG0232|consen 15 AAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTAYSLFTGFIVLSAG 94 (156)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccccchhhHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999987644 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193 80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159 (340)
Q Consensus 80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia 159 (340)
+.+|++++.+|+++|++++++++..+|||.. +..+++..+|.|++++||||++
T Consensus 95 l~vgl~~~~ag~aigi~gd~gvr~~~qQPr~---------------------------fv~~iLiLif~evlGLygLiva 147 (156)
T KOG0232|consen 95 LAVGLAGLSAGLAIGIVGDAGVRGRAQQPRL---------------------------FVGMILILIFAEVLGLYGLIVA 147 (156)
T ss_pred HHhhhcccCCCcCcCccccccchhhhcCchh---------------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986654 4446999999999999999999
Q ss_pred HHHHhc
Q psy11193 160 VLISGA 165 (340)
Q Consensus 160 ili~~~ 165 (340)
..+..+
T Consensus 148 ~~l~~~ 153 (156)
T KOG0232|consen 148 LALLTV 153 (156)
T ss_pred HhccCC
Confidence 988765
No 17
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.85 E-value=9.7e-22 Score=165.14 Aligned_cols=96 Identities=83% Similarity=1.278 Sum_probs=85.6
Q ss_pred hhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHH
Q psy11193 110 LFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF 189 (340)
Q Consensus 110 ~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGl 189 (340)
.|+++|++||++++|.+++++++++||.++|+++|++|||+++|||+|+++++..++++++++++.+|+.+|++||++|+
T Consensus 12 ~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~~~s~~~g~~~~~aGL~vGl 91 (108)
T TIGR01100 12 VFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKSNYSLYKGFIHLGAGLAVGL 91 (108)
T ss_pred HHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHH
Confidence 45566666777777777788888999999999999999999999999999999999876555789999999999999999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy11193 190 SGLAAGFAIGIVGDAG 205 (340)
Q Consensus 190 a~lgSGigqG~~~aaa 205 (340)
+++.||++||++++++
T Consensus 92 ~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 92 SGLAAGFAIGIVGDAG 107 (108)
T ss_pred HHHHHHhhccccccCC
Confidence 9999999999999875
No 18
>KOG0233|consensus
Probab=99.84 E-value=5.3e-22 Score=178.25 Aligned_cols=140 Identities=30% Similarity=0.593 Sum_probs=128.6
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC---Cc---cchhhHHHH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEP---VK---YPAYKGFIH 75 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~---~~---~~~~~g~~~ 75 (340)
.++.|+.+|+|||+...|++..|..+|.|+..+|+|+.++|||+.+|||+|+++++++|+++- +. .++++|+..
T Consensus 49 l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~n~~~gy~l 128 (196)
T KOG0233|consen 49 LCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQNLYTGYAL 128 (196)
T ss_pred HhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccchhhhhHHH
Confidence 467899999999999999999999999999999999999999999999999999999988642 22 357899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHH
Q psy11193 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 155 (340)
Q Consensus 76 l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYG 155 (340)
|++|+.+|++++.+|+++|++|+++.-+.| ++|.+|.|.++..+|..+++++|
T Consensus 129 F~aGl~vG~~nl~cglavGIigs~aalaDA---------------------------~n~tLFvKilivEIfgSaiGLfG 181 (196)
T KOG0233|consen 129 FGAGLIVGLCNLVCGLAVGIIGSGAALADA---------------------------ANPTLFVKILIVEIFGSAIGLFG 181 (196)
T ss_pred hhhhHHHHHHHHHhhhhhhhhchhhhhhcc---------------------------cCccceeeeehhhhHHHHHHHHH
Confidence 999999999999999999999999877777 48899999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy11193 156 LVVAVLISGAVQE 168 (340)
Q Consensus 156 LIiaili~~~i~~ 168 (340)
||+.+++.+|.+.
T Consensus 182 lIvgi~ms~KA~~ 194 (196)
T KOG0233|consen 182 LIVGIVMSSKASM 194 (196)
T ss_pred HHHHhhccccccc
Confidence 9999999988654
No 19
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.56 E-value=1.3e-14 Score=115.96 Aligned_cols=70 Identities=41% Similarity=0.596 Sum_probs=66.5
Q ss_pred hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q psy11193 176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFE 245 (340)
Q Consensus 176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~ 245 (340)
+++.++++||++|++++++|++||.+++++++++||||| +|+++++..+++|+++||+|++++++..+.|
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~ 79 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP 79 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999 9999999999999999999999998875543
No 20
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.52 E-value=6.9e-14 Score=107.41 Aligned_cols=65 Identities=37% Similarity=0.560 Sum_probs=62.4
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193 178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCTT 242 (340)
Q Consensus 178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~~ 242 (340)
+.++++|+++|+++++||+++|.++++++++++||||+++++++..+++|+++||||++++++..
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~ 65 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLF 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999999999998764
No 21
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.50 E-value=7.4e-14 Score=112.24 Aligned_cols=73 Identities=27% Similarity=0.386 Sum_probs=66.7
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY 246 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~ 246 (340)
...+++.+++|+++|++++++|++||.++++++++++|||| +++++++..+++|+++||+|++++++.-.-|+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~ 80 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45667899999999999999999999999999999999998 56779999999999999999999988866664
No 22
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.48 E-value=3.1e-13 Score=112.91 Aligned_cols=70 Identities=24% Similarity=0.399 Sum_probs=65.8
Q ss_pred cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
.....+..++++|+++|+++++||++||+++++++++++||||.++++++..+++|+++||||++++++.
T Consensus 29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLl 98 (102)
T PRK06251 29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLML 98 (102)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999999999999999999999999999999999999999999865
No 23
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.46 E-value=2.5e-13 Score=110.36 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=69.5
Q ss_pred cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q psy11193 172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTTFEYL 247 (340)
Q Consensus 172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~f~~~ 247 (340)
.+...+...+++|+++|++++++|++||.++++++++++||||. +++|++..+++|+++||+|++++++.-+.|+.
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~~ 82 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPFW 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999985 78999999999999999999999988777864
No 24
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.46 E-value=3e-13 Score=108.64 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=64.3
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTT 243 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~ 243 (340)
+..+++++++|+++|++++++|++||.++++++++++||||. +++|++..+++|+++||+|++++++.-.
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456779999999999999999999999999999999999995 7778999999999999999999987643
No 25
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.45 E-value=3.6e-13 Score=108.55 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=66.7
Q ss_pred chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCTTTFEY 246 (340)
Q Consensus 173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~~~f~~ 246 (340)
+..++...+++|+++|++++++|++||.++++++++++||||. +++|++..+++|+++||+|++++++.-+-|+
T Consensus 3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~ 80 (82)
T PRK13468 3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999999999999985 5688888999999999999999987765564
No 26
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.44 E-value=5.1e-13 Score=106.77 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=64.0
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTT 243 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~ 243 (340)
+..+...+++|+++|++++++|++||.++++++++++|||| +++++++..+++|+++||+|++++++.-.
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999998 46699999999999999999999987643
No 27
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.43 E-value=6.4e-13 Score=106.22 Aligned_cols=72 Identities=43% Similarity=0.690 Sum_probs=68.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
+++.++++||++|++++++|++||+++++++++++|||+ ..|++++|+++..+|+|+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~-----------------------~~~~l~~~~~i~~~l~E~ 62 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE-----------------------AAGKLFGKMFIGLALVEA 62 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-----------------------hhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999887 477899999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy11193 151 IAIYGLVVAVLISGA 165 (340)
Q Consensus 151 laIYGLIiaili~~~ 165 (340)
++||+|++++++..+
T Consensus 63 ~~i~~lvialll~f~ 77 (79)
T COG0636 63 LGIYGLVIALLLLFA 77 (79)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998765
No 28
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.40 E-value=1.2e-12 Score=104.65 Aligned_cols=67 Identities=30% Similarity=0.455 Sum_probs=62.3
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
+..++.++++|+++ ++++++|++||.++++++++++|||| +++++++..+++|+++|||+++++++.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~ill 76 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILL 76 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999 99999999999999999999999998 677779999999999999999998765
No 29
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.39 E-value=1.6e-12 Score=105.45 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=62.9
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~ 241 (340)
...+.+++++|+++|++++++|+++|.++++++++++||||. +++++++.+++|+++||++++++++.
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lll 82 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLIL 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999996 45889999999999999999998765
No 30
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.36 E-value=3.7e-12 Score=97.81 Aligned_cols=66 Identities=39% Similarity=0.636 Sum_probs=61.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA 152 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala 152 (340)
|.++++|+++|+++++||+++|+++++++++++ ++||+++|.+++.+|+|+++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a---------------------------~~p~~~~~~li~~~~~E~~~ 53 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIA---------------------------RQPELFTKMLIGAAFIEALG 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HSGGHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hccccchhhhhhHHHHHHHH
Confidence 578999999999999999999999999988887 58889999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy11193 153 IYGLVVAVLISGA 165 (340)
Q Consensus 153 IYGLIiaili~~~ 165 (340)
||++++++++.++
T Consensus 54 i~glv~~~~l~~~ 66 (66)
T PF00137_consen 54 IYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998753
No 31
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.34 E-value=4.1e-12 Score=106.69 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.6
Q ss_pred chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY 246 (340)
Q Consensus 173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~ 246 (340)
+...+...+++|+++|++++++|++||.+.++++++++|||| +++++++..+++|+++||++++++++.-.-|+
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~ 103 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778999999999999999999999999999999999998 56779999999999999999999988766664
No 32
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.33 E-value=5.8e-12 Score=99.83 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=62.0
Q ss_pred hhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 175 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 175 ~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
..+.+.+++|+++ ++++++|+++|.++++++++++|||| +++++++..+++|+++||++++++++.
T Consensus 3 ~~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lll 72 (74)
T PRK07558 3 AEALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLL 72 (74)
T ss_pred HhHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999 99999999999999999999999999 899999999999999999999998764
No 33
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.33 E-value=5.9e-12 Score=105.05 Aligned_cols=72 Identities=17% Similarity=0.348 Sum_probs=68.3
Q ss_pred hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q psy11193 176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEYL 247 (340)
Q Consensus 176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~~ 247 (340)
.+...+++|+++|++++++|+++|.+.++++++++|||| ++++|++..++.|+++||++++++++.-..|+.
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~ 87 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLA 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999999999999999999999999999998 699999999999999999999999999888876
No 34
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.32 E-value=6.8e-12 Score=100.94 Aligned_cols=73 Identities=29% Similarity=0.463 Sum_probs=67.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHH
Q psy11193 70 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAG 149 (340)
Q Consensus 70 ~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~E 149 (340)
..++.++++|+++|++++++|++||+++++++++++|||+ ..+++++++++..++.|
T Consensus 5 ~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe-----------------------~~~~l~~~~~i~~al~E 61 (81)
T CHL00061 5 ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE-----------------------AEGKIRGTLLLSLAFME 61 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------------------HhhhHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999998 46788999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy11193 150 IIAIYGLVVAVLISGA 165 (340)
Q Consensus 150 alaIYGLIiaili~~~ 165 (340)
+.+||+|++++++...
T Consensus 62 a~aiy~lvvalillf~ 77 (81)
T CHL00061 62 ALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998765
No 35
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.32 E-value=7.3e-12 Score=100.63 Aligned_cols=74 Identities=27% Similarity=0.423 Sum_probs=68.0
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+.+++.++++||++|++++++|++||+++++++++++|||+ ..+++++++++..+++
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe-----------------------~~~~~~~~~~i~~al~ 60 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPE-----------------------AEGKIRGTLLLSLAFM 60 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------------------HhhhhHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999998 4678889999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+++||++++++++...
T Consensus 61 Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 61 ESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999997654
No 36
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.26 E-value=2.3e-11 Score=97.14 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=62.9
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
+..+.+.+++|+++ ++.+++|+++|.+.++.+++++|||| ++++|++..++.|+++||++++++++.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lll 74 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLIL 74 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999 99999999999999999999999998 699999999999999999999998764
No 37
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.26 E-value=4.7e-11 Score=99.54 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
+..+++|+++ ++++++|++||.++++++++++|||| +++++++..+++|+++||+|++++++.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lll 97 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILI 97 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999 99999999999999999999999998 477899999999999999999998765
No 38
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.26 E-value=2.5e-11 Score=97.92 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=68.5
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHH
Q psy11193 68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVM 147 (340)
Q Consensus 68 ~~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if 147 (340)
++.++..++++|+++|++++++|++||.++++++++++|||+ ..+++++.+++..++
T Consensus 3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe-----------------------~~g~l~~~m~ig~al 59 (82)
T PRK13468 3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPD-----------------------AAGTISRTLFVGLAM 59 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999998 467888889999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy11193 148 AGIIAIYGLVVAVLISGA 165 (340)
Q Consensus 148 ~EalaIYGLIiaili~~~ 165 (340)
+|+++||++++++++...
T Consensus 60 ~E~~ai~alviallllfa 77 (82)
T PRK13468 60 IESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987654
No 39
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.25 E-value=2.8e-11 Score=96.88 Aligned_cols=72 Identities=31% Similarity=0.567 Sum_probs=66.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+..++.++++||++ ++++++|+++|.++++++++++|||+ ..+++++.+++..+++
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe-----------------------~~g~l~~~~~i~~al~ 61 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPE-----------------------ASGKIMSTMLLGAALA 61 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCch-----------------------HHHhHHHHHHHHHHHH
Confidence 45788999999999 99999999999999999999999998 4678889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11193 149 GIIAIYGLVVAVLISG 164 (340)
Q Consensus 149 EalaIYGLIiaili~~ 164 (340)
|+++||++++++++..
T Consensus 62 Eal~i~glvva~illf 77 (79)
T PRK13469 62 EATAIYGLVIAIILLF 77 (79)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 40
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.25 E-value=3.3e-11 Score=96.44 Aligned_cols=73 Identities=32% Similarity=0.507 Sum_probs=67.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHH
Q psy11193 70 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAG 149 (340)
Q Consensus 70 ~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~E 149 (340)
..+..++++|+++|++++++|+++|.++++++++++|||+ ..+++++++++...++|
T Consensus 4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe-----------------------~~~~l~~~~~ig~Al~E 60 (78)
T PRK06876 4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPE-----------------------LIPMLQTKMFIGAGLVD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHhHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999 47789999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy11193 150 IIAIYGLVVAVLISGA 165 (340)
Q Consensus 150 alaIYGLIiaili~~~ 165 (340)
+.+||+|++++++...
T Consensus 61 a~~i~~lvva~illf~ 76 (78)
T PRK06876 61 AIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 41
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.25 E-value=2.4e-11 Score=98.85 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=68.6
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+..++.++++|+++|++++++|++||+++++++++++|||+ ..+++.+.+++...++
T Consensus 5 ~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe-----------------------~~~~i~~~m~ig~Alv 61 (86)
T TIGR03322 5 IIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPD-----------------------ASNTITRTLFVGLAMI 61 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-----------------------HHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999998 4788889999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+++||++++++++...
T Consensus 62 Ea~ai~alvia~lllf~ 78 (86)
T TIGR03322 62 ESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997655
No 42
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.23 E-value=4.5e-11 Score=97.05 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=67.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
...+..++++|+++|++++++|+++|.++++++++++|||+ ..+++++++++...++
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe-----------------------~~g~l~~~~~ig~aL~ 67 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPE-----------------------MVGTITTRMLLADAVA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChH-----------------------HHhhHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999998 4688999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+++||++++++++...
T Consensus 68 Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 68 ETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987653
No 43
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.21 E-value=4.7e-11 Score=92.85 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=54.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193 183 AGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSC 240 (340)
Q Consensus 183 AGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill 240 (340)
.++++|++++++|+++|.+.++++++++|||| ++++|++..++.|+++||++++++++
T Consensus 4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35888999999999999999999999999998 69999999999999999999999874
No 44
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.21 E-value=9.3e-11 Score=98.11 Aligned_cols=69 Identities=35% Similarity=0.542 Sum_probs=63.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
...+..++++|+++|+++++||++||+++++++++++| +||.+.+.++..+++
T Consensus 31 ~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr---------------------------~Pe~~g~~ii~~al~ 83 (102)
T PRK06251 31 QGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTE---------------------------RRDMFGTVLIFVAIG 83 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------ChHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999985 777788899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11193 149 GIIAIYGLVVAVLISG 164 (340)
Q Consensus 149 EalaIYGLIiaili~~ 164 (340)
|+++|||+++++++..
T Consensus 84 Ea~aIyglvVa~lLlf 99 (102)
T PRK06251 84 EGIAVYGILFAVLMLF 99 (102)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999764
No 45
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.19 E-value=6.5e-11 Score=92.08 Aligned_cols=56 Identities=23% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193 185 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSC 240 (340)
Q Consensus 185 LavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill 240 (340)
+++|++++++|+++|.+.++++++++|||| +++.|++..++.|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788899999999999999999999998 69999999999999999999999875
No 46
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.19 E-value=1e-10 Score=94.31 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=61.9
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
...+...+++|+++|++++++|+++|.+.++++++++|||| ++++|++..++.|++.+|++++.++..
T Consensus 4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~ 75 (81)
T PRK05880 4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFV 75 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999999999999999999998 699999999999999998888777644
No 47
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.11 E-value=2.5e-10 Score=91.85 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=55.3
Q ss_pred cchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11193 172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKS 239 (340)
Q Consensus 172 ~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvail 239 (340)
.+...+.+.+++ |++++++|+++|.++++++++++|||| +++.|++..++.|+++||+|+++++
T Consensus 12 ~~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 12 ETTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566655555 556689999999999999999999998 6899999999999999999999986
No 48
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.10 E-value=3.3e-10 Score=95.24 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=69.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
...+..++++|+++|++++++|++||.+++.++++++|||+ ..+++++++++...++
T Consensus 27 ~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe-----------------------~~~~i~~~~~ig~Al~ 83 (105)
T PRK08482 27 MIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPG-----------------------LGGKLMTTMFIALAMI 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+.+||++++++++...
T Consensus 84 Ea~~i~alvia~illf~ 100 (105)
T PRK08482 84 EAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 49
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.09 E-value=4.2e-10 Score=89.26 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=65.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
.+...+++|+++ ++++++|+++|.++++++++++|||+ ..+++++++++...+.|+
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe-----------------------~~~~l~~~~~ig~Al~Ea 59 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPS-----------------------AADSQFGYLLIGAALAEA 59 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCch-----------------------HHHhHHHHHHHHHHHHHH
Confidence 467889999999 99999999999999999999999998 478999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11193 151 IAIYGLVVAVLISG 164 (340)
Q Consensus 151 laIYGLIiaili~~ 164 (340)
.+||++++++++..
T Consensus 60 ~~i~alvva~lllf 73 (74)
T PRK07558 60 LGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 50
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.07 E-value=2.5e-10 Score=86.67 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHHHHHhhhcCcch----hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 191 GLAAGFAIGIVGDAGVRGTAQQPRL----FVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 191 ~lgSGigqG~~~aaai~aiArqPel----f~kmlI~~af~EalAIyGLVvaill~ 241 (340)
++++|+++|.++++++++++||||. +++|++..+++|+++||++++++++.
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lll 56 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILL 56 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999985 99999999999999999999998764
No 51
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.05 E-value=7.5e-10 Score=88.49 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.5
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
..++...+++|+++ ++++++|+++|.+.++.+++++|||+ ..+++++++++...+.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe-----------------------~~~~l~~~~~ig~Al~ 59 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPS-----------------------LKQQLFTYAILGFAIS 59 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChh-----------------------hHHhHHHHHHHHHHHH
Confidence 34677899999999 99999999999999999999999999 5889999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+.+||++++++++...
T Consensus 60 Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 60 EAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987653
No 52
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.03 E-value=9.4e-10 Score=91.93 Aligned_cols=72 Identities=19% Similarity=0.394 Sum_probs=68.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
.+...+++|+.+|++++++|+++|.+.++.+++++|||+ ..+++++++++...+.|+
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPE-----------------------a~~~l~t~m~IG~AliEa 68 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPE-----------------------LGGMLLGRMFIVAAFVDA 68 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999 588999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy11193 151 IAIYGLVVAVLISGA 165 (340)
Q Consensus 151 laIYGLIiaili~~~ 165 (340)
.+||++++++++...
T Consensus 69 ~ai~alvia~lllFa 83 (101)
T PRK13464 69 FAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998776
No 53
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.02 E-value=9.7e-10 Score=91.76 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=64.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
.++.++++||++ ++++++|++||.++++++++++|||+ ..+++++.+++..+++|+
T Consensus 29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPe-----------------------a~~~l~~~~~ig~Al~Ea 84 (100)
T PRK07159 29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPE-----------------------AQKQVFKLLFIGSAISET 84 (100)
T ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChH-----------------------HHHhHHHHHHHHHHHHHH
Confidence 336899999999 99999999999999999999999998 478899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11193 151 IAIYGLVVAVLISG 164 (340)
Q Consensus 151 laIYGLIiaili~~ 164 (340)
.+||++++++++..
T Consensus 85 laI~~lvia~lllf 98 (100)
T PRK07159 85 SSIYALLVAFILIF 98 (100)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 54
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=98.99 E-value=2.1e-09 Score=86.70 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=66.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
...+..++++|+++|++++++|+++|.+.++++++++|||+ ..+++++++++...++
T Consensus 4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPE-----------------------a~~~l~~~m~iG~Al~ 60 (81)
T PRK05880 4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPE-----------------------AQGRLFTPFFITVGLV 60 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy11193 149 GIIAIYGLVVAVLISGA 165 (340)
Q Consensus 149 EalaIYGLIiaili~~~ 165 (340)
|+..+|.+.+.+++...
T Consensus 61 Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 61 EAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999988888776543
No 55
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=98.98 E-value=1.5e-09 Score=84.50 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy11193 79 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 158 (340)
Q Consensus 79 gL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIi 158 (340)
++++|++++++|+++|.+.+.++++++|||+ ..+++++.+++...+.|+.+||++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPe-----------------------a~~~l~~~~~ig~al~Ea~~i~alvi 61 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPE-----------------------MQSKLMAGVFLGVAFIEGTFFVTLAM 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999 58899999999999999999999999
Q ss_pred HHHH
Q psy11193 159 AVLI 162 (340)
Q Consensus 159 aili 162 (340)
++++
T Consensus 62 a~l~ 65 (66)
T PRK13466 62 TFVL 65 (66)
T ss_pred HHHh
Confidence 9874
No 56
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=98.92 E-value=3.2e-09 Score=82.68 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11193 80 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 159 (340)
Q Consensus 80 L~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIia 159 (340)
+..|++++++|+++|.+.+.++++++|||+ ..+++++.+++...+.|+.+||+++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE-----------------------~~~~i~~~m~ig~Al~Ea~~i~~lvia 62 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPE-----------------------MIGQLRSLMILGVAFIEGTFFVTLVMS 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999999 478999999999999999999999999
Q ss_pred HHH
Q psy11193 160 VLI 162 (340)
Q Consensus 160 ili 162 (340)
+++
T Consensus 63 ~il 65 (66)
T PRK13467 63 FIL 65 (66)
T ss_pred HHh
Confidence 985
No 57
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=98.83 E-value=1e-08 Score=82.64 Aligned_cols=66 Identities=27% Similarity=0.551 Sum_probs=58.0
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
...+...+++ |++++++|+++|.+..+++++++|||+ ..+++++.+++..++.
T Consensus 14 ~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPE-----------------------a~~~l~~~m~lG~Al~ 66 (80)
T PRK07874 14 TFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPE-----------------------MAGQLRTTMFLGIAFV 66 (80)
T ss_pred HHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHh-----------------------HHHhHHHHHHHHHHHH
Confidence 4556655555 566689999999999999999999999 5789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11193 149 GIIAIYGLVVAVL 161 (340)
Q Consensus 149 EalaIYGLIiail 161 (340)
|+.+||+++++++
T Consensus 67 Ea~~i~~lvia~l 79 (80)
T PRK07874 67 EALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 58
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=98.72 E-value=1.7e-08 Score=76.72 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11193 86 GLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISG 164 (340)
Q Consensus 86 ~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiaili~~ 164 (340)
++++|+++|.++++++++++|||+ .++++++.+++..++.|+.+||++++++++..
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe-----------------------~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPE-----------------------LKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999998 57899999999999999999999999998753
No 59
>KOG3025|consensus
Probab=97.38 E-value=0.00036 Score=60.36 Aligned_cols=68 Identities=26% Similarity=0.297 Sum_probs=61.4
Q ss_pred chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
.+.++.++++||.+. ++-.++|.++|.+-++-+.+.+|||. +|...+++.++.|+.++|-|.++|++.
T Consensus 63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflil 134 (137)
T KOG3025|consen 63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 134 (137)
T ss_pred HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356778899999876 77888999999999999999999996 699999999999999999999999875
No 60
>KOG3025|consensus
Probab=96.08 E-value=0.011 Score=51.43 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=63.1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+.+.-.+++||.+. ++-.+||.++|.+-.+-+.+.+|+|- -++++|...++..++.
T Consensus 64 i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnps-----------------------lk~~lfs~ailgfals 119 (137)
T KOG3025|consen 64 IDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS-----------------------LKQQLFSYAILGFALS 119 (137)
T ss_pred HHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCch-----------------------HHHHHHHHHHHHHHHH
Confidence 45778899999874 66667889999999999999999996 4899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11193 149 GIIAIYGLVVAVLISG 164 (340)
Q Consensus 149 EalaIYGLIiaili~~ 164 (340)
|+.++|.|.++|++..
T Consensus 120 ea~glfclm~aflilf 135 (137)
T KOG3025|consen 120 EAMGLFCLMVAFLILF 135 (137)
T ss_pred HHHhHHHHHHHHHHHh
Confidence 9999999999999864
No 61
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=53.81 E-value=38 Score=30.89 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=35.5
Q ss_pred ccCcchhhhhh----------cccchhhhhhhhhh-hhhhhcCCCcchHHHHHHHHHHHhhcccchhhhhhhhhh
Q psy11193 257 LFPSNIIYNQS----------HEFSWVRDRHFAKK-KKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNK 320 (340)
Q Consensus 257 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
++|.|--|++- -.|.|...||-... -.+.|.||++++=. |++-||-|++|
T Consensus 79 lfDI~P~YrfEDIdvLDLRVCYNGEWy~tr~vs~~ai~~iL~~p~V~~~~--------------K~~i~~i~~~K 139 (155)
T PF10777_consen 79 LFDIKPRYRFEDIDVLDLRVCYNGEWYNTRFVSDQAIDKILQSPQVPDEI--------------KQGIQRIISTK 139 (155)
T ss_pred HhhccceeeecccCeeEEeEEEcceeeeeccCCHHHHHHHHcCCCCCHHH--------------HHHHHHHHHhC
Confidence 67887776653 25899999997654 46789999998743 45556666665
No 62
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=38.13 E-value=15 Score=38.12 Aligned_cols=47 Identities=30% Similarity=0.534 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhcCCCcchHHHHHHHHHHHhhcccchhh----hhhhhhhHHHHHHHHHhhh
Q psy11193 275 DRHFAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKH----QRTMKNKFKTLLYLFLRTE 332 (340)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 332 (340)
|-.|..-|+|..++.|- .+.++||-|-. .+.|-..|-++||+|||+.
T Consensus 231 DlRf~~~~~~p~pes~A-----------VmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~k 281 (423)
T COG2718 231 DLRYKRYEKVPKPESNA-----------VMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRK 281 (423)
T ss_pred chhccCCccccCCccce-----------EEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 44455556666666553 46789998754 3567889999999999874
No 63
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=34.22 E-value=23 Score=36.30 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=26.5
Q ss_pred HHHhhcccch----hhhhhhhhhHHHHHHHHHhhhh
Q psy11193 302 CIIINMMDKS----KHQRTMKNKFKTLLYLFLRTEM 333 (340)
Q Consensus 302 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 333 (340)
..++.|||-| .|++.+-..|-.+||+|||+..
T Consensus 203 AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y 238 (371)
T TIGR02877 203 AVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKY 238 (371)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578899987 5778888899999999999753
No 64
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=34.18 E-value=55 Score=26.88 Aligned_cols=37 Identities=24% Similarity=0.579 Sum_probs=27.7
Q ss_pred cCCCcchHHHHHHHHHHHhhcccch-----hhhhhhhhhHHH
Q psy11193 287 KNPNISSYFHILWRMCIIINMMDKS-----KHQRTMKNKFKT 323 (340)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 323 (340)
+.|-...|||.+|.+-..++....+ +.-+.|+.||..
T Consensus 5 ~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdK 46 (101)
T PF14372_consen 5 SYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDK 46 (101)
T ss_pred CcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4677789999999999888886544 234567888865
No 65
>PRK05325 hypothetical protein; Provisional
Probab=32.28 E-value=26 Score=36.26 Aligned_cols=32 Identities=34% Similarity=0.689 Sum_probs=26.3
Q ss_pred HHHhhcccch----hhhhhhhhhHHHHHHHHHhhhh
Q psy11193 302 CIIINMMDKS----KHQRTMKNKFKTLLYLFLRTEM 333 (340)
Q Consensus 302 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 333 (340)
..+++|||-| .|++.+-..|-.|||+||++..
T Consensus 223 AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y 258 (401)
T PRK05325 223 AVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKY 258 (401)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 3578899987 5777788899999999999753
No 66
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=23.76 E-value=38 Score=23.90 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=11.0
Q ss_pred hhhhhhhcCCCcch
Q psy11193 280 KKKKQVLKNPNISS 293 (340)
Q Consensus 280 ~~~~~~~~~~~~~~ 293 (340)
.--|-.|.|||+|.
T Consensus 8 ~G~KAal~NPnvSe 21 (36)
T PF10346_consen 8 GGYKAALHNPNVSE 21 (36)
T ss_pred HHHHHHhcCCCcCH
Confidence 34577899999986
No 67
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=22.56 E-value=1.5e+02 Score=26.67 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=33.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Q psy11193 187 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA 226 (340)
Q Consensus 187 vGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~ 226 (340)
.|+.++.+|+-.-..++.+++-+..|||+...++++.++.
T Consensus 79 ~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIiG 118 (140)
T PF04284_consen 79 KGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTIIG 118 (140)
T ss_pred HHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHHH
Confidence 5677778888888899999999999999998887665543
No 68
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=22.52 E-value=50 Score=34.41 Aligned_cols=31 Identities=32% Similarity=0.674 Sum_probs=25.7
Q ss_pred HHHhhcccch----hhhhhhhhhHHHHHHHHHhhh
Q psy11193 302 CIIINMMDKS----KHQRTMKNKFKTLLYLFLRTE 332 (340)
Q Consensus 302 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 332 (340)
..++.|||-| .|++.|-..|-.+||+|||+.
T Consensus 247 AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~ 281 (421)
T PF04285_consen 247 AVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRK 281 (421)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 4678999987 466777788999999999975
Done!