Query psy11193
Match_columns 340
No_of_seqs 244 out of 1289
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 20:32:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 2.3E-29 8E-34 221.4 17.0 142 71-241 12-153 (156)
2 2bl2_A V-type sodium ATP synth 100.0 3.8E-29 1.3E-33 220.1 15.0 135 2-165 21-155 (156)
3 2xqu_A C15_RING, ATP synthase 99.6 4.1E-15 1.4E-19 118.3 8.2 74 173-246 4-81 (82)
4 1wu0_A ATP synthase C chain; A 99.5 2.5E-14 8.6E-19 111.2 7.9 65 177-241 2-70 (72)
5 2wgm_A ATP synthase subunit C, 99.5 3.4E-14 1.2E-18 114.6 7.5 73 173-246 8-84 (89)
6 2x2v_A ATP synthase subunit C; 99.5 7.1E-14 2.4E-18 107.9 8.8 62 180-241 3-68 (69)
7 1a91_A F1FO ATPase subunit C; 99.5 1.6E-13 5.5E-18 108.5 9.2 65 178-242 8-76 (79)
8 2xqu_A C15_RING, ATP synthase 99.5 1.6E-13 5.5E-18 109.1 8.5 75 69-166 5-79 (82)
9 1wu0_A ATP synthase C chain; A 99.4 3.7E-13 1.3E-17 104.7 7.5 70 72-164 2-71 (72)
10 2xnd_J ATP synthase lipid-bind 99.4 1.6E-13 5.6E-18 106.7 3.7 65 176-241 3-71 (72)
11 2x2v_A ATP synthase subunit C; 99.4 1.3E-12 4.5E-17 100.8 7.9 66 75-163 3-68 (69)
12 2wgm_A ATP synthase subunit C, 99.4 9.9E-13 3.4E-17 106.1 7.0 74 69-166 9-82 (89)
13 1a91_A F1FO ATPase subunit C; 99.3 3.7E-12 1.3E-16 100.7 9.2 70 73-165 8-77 (79)
14 4f4s_A ATP synthase subunit 9, 99.2 1.7E-11 6E-16 96.5 7.4 67 174-241 3-73 (76)
15 2xnd_J ATP synthase lipid-bind 99.2 1.9E-12 6.5E-17 100.7 1.2 69 71-163 3-71 (72)
16 4f4s_A ATP synthase subunit 9, 98.9 2.1E-09 7.3E-14 84.6 6.4 72 69-164 3-74 (76)
17 3s8p_A Histone-lysine N-methyl 25.1 31 0.001 32.5 2.1 38 278-330 88-125 (273)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.96 E-value=2.3e-29 Score=221.43 Aligned_cols=142 Identities=27% Similarity=0.388 Sum_probs=134.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
..+.++++++++|+++++|++++|++|++++++.+ ++||.++|++++++|+|+
T Consensus 12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~---------------------------~~P~~~~k~li~~~l~e~ 64 (156)
T 2bl2_A 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTT---------------------------SQPEKFGQALILQLLPGT 64 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------------TCGGGHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hCcHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998776665 699999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q psy11193 151 IAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 230 (340)
Q Consensus 151 laIYGLIiaili~~~i~~~~~~s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPelf~kmlI~~af~EalA 230 (340)
++|||||+++++..+++++ +++.+++.++++||++|++++++|++||+++++++++++||||+++|+++..+|+|+++
T Consensus 65 ~~IYGlvva~li~~~l~~~--~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~a 142 (156)
T 2bl2_A 65 QGLYGFVIAFLIFINLGSD--MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYA 142 (156)
T ss_dssp HHHHHHHHHHHHHHTCCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy11193 231 PYFLSLIKSCT 241 (340)
Q Consensus 231 IyGLVvaill~ 241 (340)
||+|++++++.
T Consensus 143 i~glvia~ll~ 153 (156)
T 2bl2_A 143 ILGFVISFLLV 153 (156)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 2
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.96 E-value=3.8e-29 Score=220.08 Aligned_cols=135 Identities=31% Similarity=0.505 Sum_probs=126.6
Q ss_pred cchhhhhhhhHHHhHHhhHHHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHhHHH
Q psy11193 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLA 81 (340)
Q Consensus 2 ~a~~ls~iGSA~G~~~aG~a~~g~~~~~P~~~~k~lI~~~~~gtqgIYGlIva~li~~~i~~~~~~~~~~g~~~l~AgL~ 81 (340)
.+++++++||+||++++|++++++.+||||+++|++++++|||+|+|||||+++++..++++ ++++.+++.++++||+
T Consensus 21 la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~--~~~~~~g~~~igagl~ 98 (156)
T 2bl2_A 21 TATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGS--DMSVVQGLNFLGASLP 98 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCT--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999875 3678999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11193 82 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 161 (340)
Q Consensus 82 vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIYGLIiail 161 (340)
+|++++++|++||+++++++++++| +||.+.|+++..+|+|+++||+|+++++
T Consensus 99 ~Gla~lgagigiG~v~~~~i~a~ar---------------------------qPe~~~~~ii~~a~~Ea~ai~glvia~l 151 (156)
T 2bl2_A 99 IAFTGLFSGIAQGKVAAAGIQILAK---------------------------KPEHATKGIIFAAMVETYAILGFVISFL 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------CGGGHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 6777788999999999999999999999
Q ss_pred HHhc
Q psy11193 162 ISGA 165 (340)
Q Consensus 162 i~~~ 165 (340)
+..+
T Consensus 152 l~~~ 155 (156)
T 2bl2_A 152 LVLN 155 (156)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8653
No 3
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.58 E-value=4.1e-15 Score=118.26 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=69.0
Q ss_pred chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY 246 (340)
Q Consensus 173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~ 246 (340)
++.+++.++++|+++|++++++|++||.++++++++++|||| +|+++++..+++|+++||+|++++++....|.
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~ 81 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999999 57889999999999999999999998876664
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.52 E-value=2.5e-14 Score=111.21 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=60.9
Q ss_pred hHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 177 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 177 g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
++.++++|+++|++++++|++||+++++++++++|||| +|+++++..+++|+++||+|++++++.
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 70 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYL 70 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999 566699999999999999999999865
No 5
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.50 E-value=3.4e-14 Score=114.64 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=68.6
Q ss_pred chhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q psy11193 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTTTFEY 246 (340)
Q Consensus 173 s~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~~f~~ 246 (340)
++.+++.++++|+++ ++++++|++||.++++++++++|||| +|+++++..+++|+++||+|++++++....|.
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~ 84 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPF 84 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999 99999999999999999999999999 59999999999999999999999998877765
No 6
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.49 E-value=7.1e-14 Score=107.86 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=58.1
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 180 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 180 ~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
.+++|+++|++++++|++||.++++++++++|||| +|+++++..+++|+++||+|++++++.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999 555599999999999999999999764
No 7
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.47 E-value=1.6e-13 Score=108.53 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=60.9
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11193 178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCTT 242 (340)
Q Consensus 178 ~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~~ 242 (340)
+..++++|++|++++++|++||.++++++++++|||| +++++++..+++|+++||+|++++++.-
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf 76 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999 6778999999999999999999998764
No 8
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.46 E-value=1.6e-13 Score=109.06 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=70.3
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+.+++.++++|+++|+++++||++||+++++++++++|||+ .++++++++++..+++
T Consensus 5 ~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe-----------------------~~~~l~~~~ii~~al~ 61 (82)
T 2xqu_A 5 LTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPE-----------------------AEGKIRGTLLLSLAFM 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------------------HhhhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998 4678899999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy11193 149 GIIAIYGLVVAVLISGAV 166 (340)
Q Consensus 149 EalaIYGLIiaili~~~i 166 (340)
|+++||++++++++....
T Consensus 62 Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 62 EALTIYGLVVALVLLFAN 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999987753
No 9
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.41 E-value=3.7e-13 Score=104.65 Aligned_cols=70 Identities=31% Similarity=0.541 Sum_probs=65.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHH
Q psy11193 72 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGII 151 (340)
Q Consensus 72 g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eal 151 (340)
++.++++|+++|++++++|++||+++++++++++|||+ ..+++++++++..+++|++
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~ 58 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPE-----------------------LRPVLQTTMFIGVALVEAL 58 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-----------------------TTTHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HhhhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998 5778899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy11193 152 AIYGLVVAVLISG 164 (340)
Q Consensus 152 aIYGLIiaili~~ 164 (340)
+||++++++++..
T Consensus 59 ai~~lvia~lllf 71 (72)
T 1wu0_A 59 PIIGVVFSFIYLG 71 (72)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999763
No 10
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.38 E-value=1.6e-13 Score=106.70 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=60.2
Q ss_pred hhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 176 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 176 ~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
++++++++||++ ++++++|++||.++++++++++|||| +|+++++..+++|+++||+|++++++.
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999 99999999999999999999999998 677899999999999999999999864
No 11
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.37 E-value=1.3e-12 Score=100.76 Aligned_cols=66 Identities=33% Similarity=0.555 Sum_probs=61.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHHHH
Q psy11193 75 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 154 (340)
Q Consensus 75 ~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~EalaIY 154 (340)
++++|+++|+++++||++||+++++++++++|||+ .++++++++++..+++|+++||
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~ai~ 59 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPE-----------------------LRGTLQTLMFIGVPLAEAVPII 59 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHhhHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999887 4677888899999999999999
Q ss_pred HHHHHHHHH
Q psy11193 155 GLVVAVLIS 163 (340)
Q Consensus 155 GLIiaili~ 163 (340)
++++++++.
T Consensus 60 ~lvia~lll 68 (69)
T 2x2v_A 60 AIVISLLIL 68 (69)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 12
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.36 E-value=9.9e-13 Score=106.09 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=69.5
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+.+++.++++||++ ++++++|++||+++++++++++|||+ .++++++++++..+++
T Consensus 9 ~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe-----------------------~~~~l~~~~ii~~al~ 64 (89)
T 2wgm_A 9 VVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPE-----------------------AKGDIISTMVLGQAVA 64 (89)
T ss_dssp HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch-----------------------HhhhHHHHHHHHHHHH
Confidence 57899999999999 99999999999999999999999998 5788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy11193 149 GIIAIYGLVVAVLISGAV 166 (340)
Q Consensus 149 EalaIYGLIiaili~~~i 166 (340)
|+++||++++++++....
T Consensus 65 Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 65 ESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 13
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.34 E-value=3.7e-12 Score=100.69 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=65.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHHHH
Q psy11193 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIA 152 (340)
Q Consensus 73 ~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Eala 152 (340)
+.+++++|++|++++++|++||+++++++++++|||+ ..+++++++++..+++|+++
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe-----------------------~~~~l~~~~ii~~al~Ea~a 64 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD-----------------------LIPLLRTQFFIVMGLVDAIP 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS-----------------------SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHhhHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999998 57889999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy11193 153 IYGLVVAVLISGA 165 (340)
Q Consensus 153 IYGLIiaili~~~ 165 (340)
||+|++++++...
T Consensus 65 i~glvia~lllf~ 77 (79)
T 1a91_A 65 MIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998653
No 14
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.23 E-value=1.7e-11 Score=96.48 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=62.7
Q ss_pred hhhhHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHhhhcCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11193 174 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGPYFLSLIKSCT 241 (340)
Q Consensus 174 ~~~g~~~lgAGLavGla~lgSGigqG~~~aaai~aiArqPe----lf~kmlI~~af~EalAIyGLVvaill~ 241 (340)
+..+.+.+++|+++ ++..++|++||.+.++.+++++|||| +|+.+++..++.|+++||+|++++++.
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lll 73 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL 73 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998 99999999999999999999999996 799999999999999999999999875
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.21 E-value=1.9e-12 Score=100.70 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=64.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHHHH
Q psy11193 71 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGI 150 (340)
Q Consensus 71 ~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~Ea 150 (340)
+++.++++||++ ++++++|++||+++++++++++|||+ ..+++++++++..+++|+
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe-----------------------~~~~l~~~~~i~~al~Ea 58 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS-----------------------LKQQLFSYAILGFALSEA 58 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSC-----------------------CCCCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcH-----------------------HHHhHHHHHHHHHHHHHH
Confidence 456789999999 99999999999999999999999998 578899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11193 151 IAIYGLVVAVLIS 163 (340)
Q Consensus 151 laIYGLIiaili~ 163 (340)
++||++++++++.
T Consensus 59 ~~i~~lvia~lll 71 (72)
T 2xnd_J 59 MGLFCLMVAFLIL 71 (72)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=98.90 E-value=2.1e-09 Score=84.60 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=66.6
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccccCchhhhhhhhhhhhhhhcchhhhccccchhhhhhHHHHHHHH
Q psy11193 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMA 148 (340)
Q Consensus 69 ~~~g~~~l~AgL~vGla~l~SGi~~G~~g~a~~~a~a~~~~~~s~iGaA~Gta~aGigI~~~a~~~P~i~~k~II~~if~ 148 (340)
+.....++++|+++ ++..++|+++|.+..+.+++++|||+ .++++++..++..++.
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~-----------------------~~~~l~~~~ilG~Al~ 58 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPS-----------------------IKDTVFPMAILGFALS 58 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChh-----------------------HHHhHHHHHHHHHHHH
Confidence 45677899999998 99999999999999999999999998 5889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11193 149 GIIAIYGLVVAVLISG 164 (340)
Q Consensus 149 EalaIYGLIiaili~~ 164 (340)
|+.+||+|++++++..
T Consensus 59 Ea~glf~LvvA~lllF 74 (76)
T 4f4s_A 59 EATGLFCLMVSFLLLF 74 (76)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 17
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=25.08 E-value=31 Score=32.47 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=25.0
Q ss_pred hhhhhhhhhcCCCcchHHHHHHHHHHHhhcccchhhhhhhhhhHHHHHHHHHh
Q psy11193 278 FAKKKKQVLKNPNISSYFHILWRMCIIINMMDKSKHQRTMKNKFKTLLYLFLR 330 (340)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
+.+--++.+..|.+..|| .+|+++| ++.||+-++.+|+
T Consensus 88 ~~~a~~~l~~~~~~~~~f------------~~~~~~~---~~~f~~h~~ryl~ 125 (273)
T 3s8p_A 88 LEKAFKCLTSGEWARHYF------------LNKNKMQ---EKLFKEHVFIYLR 125 (273)
T ss_dssp HHHHHHHHSCSHHHHHHH------------TTCCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhh------------cccCHHH---HHHHHHHHHHhhh
Confidence 333334445555555555 6788887 6889999988885
Done!