RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11193
(340 letters)
>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid
subunit. This model describes the vacuolar ATP synthase
16 kDa proteolipid subunit in eukaryotes and includes
members from diverse groups e.g., fungi, plants,
parasites etc. The principal role V-ATPases are the
acidification of intracellular compartments of
eukaryotic cells [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 108
Score = 153 bits (389), Expect = 1e-46
Identities = 81/97 (83%), Positives = 87/97 (89%)
Query: 110 LFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEP 169
+F ALGAAYGTAK+G GIAAM VMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+G+++
Sbjct: 12 VFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK 71
Query: 170 VKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGV 206
Y YKGFIHLGAGLAVG SGLAAGFAIGIVGDAGV
Sbjct: 72 SNYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108
Score = 152 bits (386), Expect = 3e-46
Identities = 81/100 (81%), Positives = 90/100 (90%)
Query: 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 61
++L+ +ALGAAYGTAK+G GIAAM VMRPELIMKSIIPVVMAGIIAIYGLVVAVLI+G++
Sbjct: 9 AALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSL 68
Query: 62 QEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGV 101
+ Y YKGFIHLGAGLAVG SGLAAGFAIGIVGDAGV
Sbjct: 69 KPKSNYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108
>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C.
Length = 66
Score = 51.7 bits (125), Expect = 6e-09
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 27/93 (29%)
Query: 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSV 132
LGAGLA+G + L AG IGI G A + A+ P LF
Sbjct: 1 LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELF--------------------- 39
Query: 133 MRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA 165
K +I +A +AIYGLV+A+L+ A
Sbjct: 40 ------GKMLIGAALAEALAIYGLVIALLLLFA 66
Score = 50.9 bits (123), Expect = 8e-09
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 178 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232
LGAGLA+G + L AG IGI G A + A+ P LF M++ AE L Y
Sbjct: 1 LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIY 55
Score = 50.1 bits (121), Expect = 2e-08
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 8 ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGA 60
ALGA G AG PEL K +I +A +AIYGLV+A+L+ A
Sbjct: 14 ALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIALLLLFA 66
>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
Length = 213
Score = 53.3 bits (128), Expect = 3e-08
Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 38/206 (18%)
Query: 8 ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKY 67
LG+ G G A + P +I+ + +YG +VA+LI +
Sbjct: 13 GLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKTA--- 69
Query: 68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGI 127
+ L AGLAVG +GL+A GI AG+ A+ +F
Sbjct: 70 ---PEWAMLAAGLAVGLAGLSA-IGQGIAASAGLGAVAEDDSIF---------------- 109
Query: 128 AAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAV 187
K+++ V+ AIYGL+VA+L+ V P + LGAGLAV
Sbjct: 110 -----------GKAMVFSVLPETQAIYGLLVAILLLVGV---FASPGVETIAALGAGLAV 155
Query: 188 GFSGLAAGFAIGIVGDAGVRGTAQQP 213
GF+GL +G GI + TA+ P
Sbjct: 156 GFAGL-SGIGQGITAAGAIGATARDP 180
Score = 45.6 bits (108), Expect = 1e-05
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 34/141 (24%)
Query: 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
+GAGLAVG +GL +G GI G +G A+ P F GT I ++ +
Sbjct: 3 IGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKF------------GTAIVFQALPQT 50
Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAG 195
+ +YG +VA+LI + + L AGLAVG +GL+A
Sbjct: 51 Q---------------GLYGFLVAILILFVFKTA------PEWAMLAAGLAVGLAGLSA- 88
Query: 196 FAIGIVGDAGVRGTAQQPRLF 216
GI AG+ A+ +F
Sbjct: 89 IGQGIAASAGLGAVAEDDSIF 109
Score = 41.7 bits (98), Expect = 2e-04
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)
Query: 14 GTAKAGTGIAAMSVM-----RPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYP 68
G + G GIAA + + + K+++ V+ AIYGL+VA+L+ V P
Sbjct: 85 GLSAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGV---FASP 141
Query: 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIA 128
+ LGAGLAVGF+GL+ G GI + TA+ P
Sbjct: 142 GVETIAALGAGLAVGFAGLS-GIGQGITAAGAIGATARDP-------------------- 180
Query: 129 AMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 162
+ + K ++ VM AI+GL++A+LI
Sbjct: 181 -------DAMGKGLVLAVMPETFAIFGLLIAILI 207
Score = 32.1 bits (73), Expect = 0.28
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 181 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232
+GAGLAVG +GL +G GI G +G A+ P F I+ + G Y
Sbjct: 3 IGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLY 54
>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.
Length = 159
Score = 51.5 bits (124), Expect = 4e-08
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 29/159 (18%)
Query: 9 LGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYP 68
+G+A G KAG A + PE K++I ++ G +YG V+ LI + +
Sbjct: 30 IGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITPEL--S 87
Query: 69 AYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIA 128
+G + A L + GL + + G V AG++ A+
Sbjct: 88 LAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAK---------------------- 125
Query: 129 AMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQ 167
RPE K II M AI VV+ L+ V+
Sbjct: 126 -----RPEEFTKGIILAAMVETYAILAFVVSFLLLNGVK 159
Score = 48.4 bits (116), Expect = 6e-07
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 30/147 (20%)
Query: 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
LGA LAVG SG+ G+A G KAG A + P
Sbjct: 19 LGAALAVGLSGI---------------------------GSAKGVGKAGEAAAGLLTEEP 51
Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAG 195
E K++I ++ G +YG V+ LI + + +G + A L + GL +
Sbjct: 52 EKFGKALILQLLPGTQGLYGFVIGFLIWQKITPEL--SLAQGLAYFAACLPIAIVGLFSA 109
Query: 196 FAIGIVGDAGVRGTAQQPRLFV-GMIL 221
+ G V AG++ A++P F G+IL
Sbjct: 110 ISQGKVAAAGIQILAKRPEEFTKGIIL 136
>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit
c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
production and conversion].
Length = 79
Score = 48.8 bits (117), Expect = 7e-08
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 173 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEV 228
A KG +GAGLAVG + L AG GI+G A V A+QP LF M + L E
Sbjct: 3 AAKKGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEA 62
Query: 229 LGPY 232
LG Y
Sbjct: 63 LGIY 66
Score = 46.5 bits (111), Expect = 5e-07
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 68 PAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGI 127
A KG +GAGLAVG + L AG GI+G A V A+QP
Sbjct: 3 AAKKGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE------------------ 44
Query: 128 AAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 166
+L K I + + + IYGLV+A+L+ A
Sbjct: 45 -----AAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78
Score = 26.5 bits (59), Expect = 5.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 7 NALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 61
+G A A +A +L K I + + + IYGLV+A+L+ A
Sbjct: 24 AGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78
>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional.
Length = 161
Score = 44.8 bits (106), Expect = 1e-05
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
+GAG+AVGF+GL +G GI V A+ +F
Sbjct: 13 IGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFA----------------------- 49
Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLI---SGAVQEPVKYPAYKGFIHLGAGLAVGFSGL 192
+ II + AIYG ++A+L+ SG + G + +GAG A+GF+GL
Sbjct: 50 ----RGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGLSVTAGLVAIGAGAAIGFAGL 105
Query: 193 AAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGPY 232
+G GI + V + P +F I+ E Y
Sbjct: 106 GSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIY 145
Score = 38.3 bits (89), Expect = 0.002
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 8 ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI---SGAVQEP 64
LG+ G A G ++ + II + AIYG ++A+L+ SG +
Sbjct: 23 GLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGG 82
Query: 65 VKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 111
G + +GAG A+GF+GL +G GI + V + P +F
Sbjct: 83 EGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMF 129
>gnl|CDD|236246 PRK08344, PRK08344, V-type ATP synthase subunit K; Validated.
Length = 157
Score = 37.8 bits (88), Expect = 0.002
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 73 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSV 132
++ LGA LA G +G A+ F +GI G A A+ + F
Sbjct: 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNF--------------------- 40
Query: 133 MRPELIMKSIIPVVMAGIIAIYGLVVAVLI---------SGAVQEPVKYPAYKGFIHLGA 183
R LI+ + P+ IYGL+ LI EP K LGA
Sbjct: 41 -RNALILAGL-PMTQT----IYGLITLFLILMYAGILGGGFKFAEPDTINLGKALALLGA 94
Query: 184 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEVLG 230
GL VG + L + GI+ +G+ + P + F I++ +AE++G
Sbjct: 95 GLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMG 142
Score = 35.9 bits (83), Expect = 0.009
Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 35/163 (21%)
Query: 8 ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI---------S 58
+++G AG+ A + ++I + IYGL+ LI
Sbjct: 15 GAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGG 74
Query: 59 GAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAY 118
EP K LGAGL VG + L + GI+
Sbjct: 75 FKFAEPDTINLGKALALLGAGLLVGLAELLSAIPQGII---------------------- 112
Query: 119 GTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 161
+GI A+ + ++II A ++ I+GLV A+L
Sbjct: 113 ----CASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAIL 151
>gnl|CDD|235752 PRK06251, PRK06251, V-type ATP synthase subunit K; Validated.
Length = 102
Score = 35.1 bits (81), Expect = 0.008
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 39/135 (28%)
Query: 28 MRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGL 87
R LI+ ++P++++ +IA Q P I++GAGLAVG + +
Sbjct: 2 KRASLILSVLLPILISSVIA------------GAQAPSDTAQGFAGINIGAGLAVGLAAI 49
Query: 88 AAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVM 147
AG A+G+ AG+ ++ +F GT +I V +
Sbjct: 50 GAGIAVGMAAAAGIGVLTERRDMF-------GTV--------------------LIFVAI 82
Query: 148 AGIIAIYGLVVAVLI 162
IA+YG++ AVL+
Sbjct: 83 GEGIAVYGILFAVLM 97
Score = 34.3 bits (79), Expect = 0.015
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 133 MRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGL 192
R LI+ ++P++++ +IA Q P I++GAGLAVG + +
Sbjct: 2 KRASLILSVLLPILISSVIA------------GAQAPSDTAQGFAGINIGAGLAVGLAAI 49
Query: 193 AAGFAIGIVGDAGVRGTAQQPRLFVGMILILI 224
AG A+G+ AG+ ++ +F G +LI +
Sbjct: 50 GAGIAVGMAAAAGIGVLTERRDMF-GTVLIFV 80
Score = 27.8 bits (62), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 8 ALGAAYGTAKAGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 57
A+GA A + R ++ +I V + IA+YG++ AVL+
Sbjct: 48 AIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLM 97
>gnl|CDD|227942 COG5655, COG5655, Plasmid rolling circle replication initiator
protein and truncated derivatives [DNA replication,
recombination, and repair].
Length = 256
Score = 34.5 bits (79), Expect = 0.058
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 259 PSNIIYNQSHEFSWVRDR--------HFAKKKKQVLKNPNISSYFHI-LWRMCIIINMMD 309
Y+ E +W++D+ KK+ V + R+ +++
Sbjct: 3 QKRSDYSD--EKAWLKDKSKDGKVEPWREKKEANVKYFELLKILMFKKAERVYRCNELLE 60
Query: 310 KSKHQRTMKNKFK 322
K T +NK
Sbjct: 61 LQKVNETGENKLC 73
>gnl|CDD|180739 PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.
Length = 78
Score = 31.8 bits (73), Expect = 0.064
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 177 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL--------FVGMILI---LIF 225
G + A +A+G + L A IG++G + G A+QP L F+G L+ I
Sbjct: 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPII 65
Query: 226 AEVLGPYFL 234
+ FL
Sbjct: 66 GVGIALLFL 74
Score = 31.8 bits (73), Expect = 0.068
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 72 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL 110
G + A +A+G + L A IG++G + G A+QP L
Sbjct: 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPEL 44
>gnl|CDD|227728 COG5441, COG5441, Uncharacterized conserved protein [Function
unknown].
Length = 401
Score = 31.7 bits (72), Expect = 0.56
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 29/170 (17%)
Query: 42 MAGIIAIYGL---VVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGD 98
+A +I G +V V V A G G G AI + +
Sbjct: 21 LADLIEAAGGSPVLVDVSTLRNPTSEVDISAEDVAGAHPGGRQAVLDGNDRGSAIAAMAE 80
Query: 99 AGVRGTAQQPRL--FVALGAAYGTAKAGTGIAAMSVMRPELIMKSII------PVVMAGI 150
A VR + + + + +G + GTA + + + P++++ ++ V ++ I
Sbjct: 81 AFVRFLSSRGDVAGMIGMGGSGGTALITPAMRRLPLGVPKVMVSTLASGDVAPYVGVSDI 140
Query: 151 IAIY------GL-----VV----AVLISGAVQEPVKYPAYK---GFIHLG 182
I +Y GL VV A I+G + P + A K G G
Sbjct: 141 IMMYSVTDMAGLNRISRVVLSNAAHAIAGMAKRPAEPSAEKPAIGLTMFG 190
>gnl|CDD|177598 PHA03360, PHA03360, tegument protein; Provisional.
Length = 442
Score = 31.8 bits (72), Expect = 0.58
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 251 SLFFHCLF-PSNIIYNQ--SHEFSWV-RDRHFAKKKKQVLKNPNISSYFHILWRMCIIIN 306
SL+F C+F + Y + +F+ + R+ F K VLKN +I F L M I I
Sbjct: 39 SLYFRCVFFKEGMHYTEWSKLKFTVISREIKF----KDVLKNADIDEVFTGLVVMTIPIP 94
Query: 307 MMD 309
++D
Sbjct: 95 IVD 97
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 31.0 bits (71), Expect = 0.81
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 56 LISGAVQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALG 115
L+SGA Q LGAG AVG +GLAAG + AG A A G
Sbjct: 262 LVSGAPQ-------------LGAGAAVG-TGLAAG-GAAVAAAAGAGLAAGGGAA--AAG 304
Query: 116 AAYGTAKAGTGIAA 129
A A+ G A
Sbjct: 305 GAAAAARGGAAAAG 318
>gnl|CDD|221671 pfam12623, Hen1_L, RNA repair, ligase-Pnkp-associating, region of
Hen1. This domain is the N-terminal region of the
bacterial Hen1 protein. This protein forms stable
heterotetramer with Pnkp. The heterotetramer was able to
repair transfer RNAs cleaved by ribotoxins in vitro.
This domain provides the ligase activity of the
heterotetramer.
Length = 245
Score = 30.3 bits (69), Expect = 1.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSI-----IPVV 41
SSLL ALG + TA AG A RPEL I +P +
Sbjct: 87 SSLLSVALGKVFRTAMAGRCKA-----RPELAATPIPLEVELPAL 126
>gnl|CDD|220343 pfam09687, PRESAN, Plasmodium RESA N-terminal. The short,
four-helical domain first identified in the Plasmodium
export proteins PHISTa and PHISTc has been extended to
become this six-helical PRESAN domain identified in the
P. falciparum-specific RESA-type (Ring-infected
erythrocyte surface antigen) proteins in association
with the DnaJ domain. Overall, at least 67 proteins have
been detected in P. falciparum with complete copies of
the PRESAN domain. No versions of this domain were
detected in other apicomplexan genera, suggesting that
the domain was 'invented' after the divergence of the
lineage leading to the genus Plasmodium undergoing a
dramatic proliferation only in P. falciparum. A
secondary structure-prediction derived from the multiple
alignment of the PRESAN family reveals that it is
composed of an all-helical fold with six conserved
helical segments. There is some evidence it might
localise to membranes.
Length = 129
Score = 29.6 bits (67), Expect = 1.1
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 23/78 (29%)
Query: 262 IIYNQSHEFSWVRDRHFAKKKKQVLKNPNISSYFHIL--------------WRMCIIINM 307
II+N ++ KKK + + YF L W C
Sbjct: 29 IIWNYVNKN--------EKKKYYNMIE-KLWKYFEELAKKYNIPEEYKKKLWNECYKEIT 79
Query: 308 MDKSKHQRTMKNKFKTLL 325
D K ++ F +LL
Sbjct: 80 KDLKKLEKFYNKNFYSLL 97
>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.
Length = 79
Score = 28.5 bits (64), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 181 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGPYFL 234
+GAG+A +G+ AG IGI V +QP ++ M+L AE Y L
Sbjct: 13 IGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGL 69
Score = 27.7 bits (62), Expect = 2.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 24/87 (27%)
Query: 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMSVMRP 135
+GAG+A +G+ AG IGI V +QP +A I MS M
Sbjct: 13 IGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQP-------------EASGKI--MSTM-- 54
Query: 136 ELIMKSIIPVVMAGIIAIYGLVVAVLI 162
++ +A AIYGLV+A+++
Sbjct: 55 ------LLGAALAEATAIYGLVIAIIL 75
>gnl|CDD|205988 pfam13815, Dzip-like_N, Iguana/Dzip1-like DAZ-interacting protein
N-terminal. The DAZ gene-product - Deleted in
Azoospermia - and a closely related sequence are
required early in germ-cell development in order to
maintain germ-cell populations. This family is the
N-terminal region that is the only part of the protein
in some fungi and lower metazoa.
Length = 118
Score = 28.4 bits (64), Expect = 2.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 231 PYFLSLIKSCTTTFEYLL 248
P+ L L + EYLL
Sbjct: 55 PHLLKLFRLAQLIIEYLL 72
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 29.6 bits (67), Expect = 2.7
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 2 SSLLENALGAAYGTAKAGTGIAAMSVMRPELIMKSI-----IPVV 41
SS L A+G + TA G RPEL ++ +P +
Sbjct: 84 SSFLSVAIGKVFRTALNGR-----CKARPELADTALPLTVRLPAL 123
>gnl|CDD|236595 PRK09621, PRK09621, V-type ATP synthase subunit K; Provisional.
Length = 141
Score = 28.2 bits (63), Expect = 3.5
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 8 ALGAAYGTAKAGTG-IAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK 66
+G+A G AG A MS + E K I M +IYGL++ +L++ A+++
Sbjct: 17 MIGSAIGCGMAGVASHAVMSRID-EGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-- 73
Query: 67 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 111
+ G++VG + L + G + ++ A+ ++
Sbjct: 74 --KLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIY 116
Score = 28.2 bits (63), Expect = 3.5
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 113 ALGAAYGTAKAGTG-IAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAVQEPVK 171
+G+A G AG A MS + E K I M +IYGL++ +L++ A+++
Sbjct: 17 MIGSAIGCGMAGVASHAVMSRID-EGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-- 73
Query: 172 YPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 216
+ G++VG + L + G + ++ A+ ++
Sbjct: 74 --KLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIY 116
>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional.
Length = 85
Score = 27.1 bits (60), Expect = 4.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 181 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF----VGMILILIFAEVLGPYFL 234
+GAGL +G + G G +G + A+QP + M+L AE G Y L
Sbjct: 18 IGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSL 75
Score = 26.4 bits (58), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 76 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL 110
+GAGL +G + G G +G + A+QP +
Sbjct: 18 IGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEM 52
>gnl|CDD|149715 pfam08741, YwhD, YwhD family. This family of proteins are
currently uncharacterized. They are around 170 amino
acids in length.
Length = 163
Score = 28.1 bits (63), Expect = 4.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 305 INMMDKS-KHQ---RTMKNKFKTLLYLFLRT---EMWGR 336
+N MDKS K M + K +L FL+ +MW R
Sbjct: 115 VNKMDKSLKGHIIVDHMDDDSKKVLKDFLKNHNPDMWER 153
>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH
binding domain acts as part of the multi-component
bacterial oxygenases which oxidize hydrocarbons using
oxygen as the oxidant. Electron transfer is from NADH
via FAD (in the oxygenase reductase) and an [2FE-2S]
ferredoxin center (fused to the FAD/NADH domain and/or
discrete) to the oxygenase. Dioxygenases add both atoms
of oxygen to the substrate, while mono-oxygenases (aka
mixed oxygenases) add one atom to the substrate and one
atom to water. In dioxygenases, Class I enzymes are 2
component, containing a reductase with Rieske type
[2Fe-2S] redox centers and an oxygenase. Class II are 3
component, having discrete flavin and ferredoxin
proteins and an oxygenase. Class III have 2 [2Fe-2S]
centers, one fused to the flavin domain and the other
separate.
Length = 224
Score = 28.3 bits (64), Expect = 4.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 97 GDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAM 130
G +R +P L +A GTG+A +
Sbjct: 89 GTFYLRRDHDRPVLCIA---------GGTGLAPL 113
>gnl|CDD|180942 PRK07354, PRK07354, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 26.3 bits (58), Expect = 6.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 181 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGPYFL 234
+ A LAVG + + G G V G A+QP ++ ++L L F E L Y L
Sbjct: 11 VAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGL 68
>gnl|CDD|177795 PLN00205, PLN00205, ribisomal protein L13 family protein;
Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 6.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 301 MCIIINMMDKSKHQRTMKNKF 321
+CI++N D S R + +KF
Sbjct: 55 ICIVLNAKDISVTGRKLTDKF 75
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 28.2 bits (64), Expect = 7.2
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 45 IIAIYGLVVAVLISGAVQEPVKYPAYKGFIHLGAGLAVGF------SGLAAGFAIGIVGD 98
IAI+G+VVAVL+ G + LG AV F S LA + +
Sbjct: 32 TIAIFGVVVAVLLF----------LPAGGLFLGWLTAVAFLVGAVFSALAGYIGMRVATR 81
Query: 99 AGVRGTAQ------QPRLFVAL--GAAYGTAKAGTGIAAMSVM 133
A VR TAQ L VA GA G G G+ ++ +
Sbjct: 82 ANVR-TAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGL 123
>gnl|CDD|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride
channel ClcB; Provisional.
Length = 418
Score = 27.8 bits (62), Expect = 9.0
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 105 AQQPRLFVALGAAYGTAKAGTGIAAMSVMRPE-----LIMKSIIPVVMAGIIAIYGLVVA 159
Q+ +L++A GAA G A A A S+ E L++ S+ PVV++ ++A L+
Sbjct: 141 RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVA---LLTT 197
Query: 160 VLISGA------VQEPVKYPAYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 213
L++G+ VQ V A + + GL G G + V P
Sbjct: 198 NLLNGSDALLYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLKLAPP 257
Query: 214 ------RLFVGMILILIFAEVLGPYFLSLIKSCTTTFEYLLAISLFFHC 256
L VG+ L L V G + S+++S T L+ I+ F C
Sbjct: 258 WQLALGGLIVGL-LSLFTPAVWGNGY-SVVQSFLTAPPLLMLIAGIFLC 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.421
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,133,934
Number of extensions: 1919551
Number of successful extensions: 3954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 382
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)