RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11193
         (340 letters)



>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 177 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGPY 232
             +++ A + +G + + A   IGI+G   + G A+QP     L     +++   + +   
Sbjct: 7   DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMI 66



 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 23/95 (24%)

Query: 72  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVALGAAYGTAKAGTGIAAMS 131
             +++ A + +G + + A   IGI+G   + G A+QP                       
Sbjct: 7   DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD---------------------- 44

Query: 132 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLISGAV 166
            + P L  +  I + +   I +  + + + +  AV
Sbjct: 45  -LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,240,218
Number of extensions: 57757
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 12
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)