BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11195
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DGV|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
           E2 Antigenic Region 412-423 Bound To The Broadly
           Neutralizing Antibody Hcv1, P2(1) Form
 pdb|4DGY|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
           E2 Antigenic Region 412-423 Bound To The Broadly
           Neutralizing Antibody Hcv1, C2 Form
          Length = 213

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 213 QEDIAELEEDDNMLDLSNTLTLYSADH 239
           QE + E +  D+   LSNTLTL  AD+
Sbjct: 159 QESVTEQDSKDSTYSLSNTLTLSKADY 185


>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
          Length = 439

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 199 VSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELG 258
           ++D       AP +   I E E  +N LD     T + A  +G   A AN   +F+P++ 
Sbjct: 155 LADPGATNRAAPAISVIIPESETFNNTLD-HGVCTKFEASQLGDEVA-ANFTALFAPDIR 212

Query: 259 LCVEQPKPGFTM 270
              E+  PG T+
Sbjct: 213 ARAEKHLPGVTL 224


>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
           From Dengue Virus Serotype 4 In Complex With The Fab
           Fragment Of The Chimpanzee Monoclonal Antibody 5h2
 pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
           From Dengue Virus Serotype 4 In Complex With The Fab
           Fragment Of The Chimpanzee Monoclonal Antibody 5h2
 pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
           Ectodomain From Dengue Virus Serotype 4 In Complex With
           The Fab Fragment Of The Chimpanzee Monoclonal Antibody
           5h2
 pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
           Ectodomain From Dengue Virus Serotype 4 In Complex With
           The Fab Fragment Of The Chimpanzee Monoclonal Antibody
           5h2
          Length = 215

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 213 QEDIAELEEDDNMLDLSNTLTLYSADH 239
           QE + E +  DN   LS+TLTL  AD+
Sbjct: 161 QESVTEQDSKDNTYSLSSTLTLSKADY 187


>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
           Aspergillus Fumigatus, Revealing The Structural Basis
           For Its Heat Resilience And Catalytic Pathway
          Length = 442

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 199 VSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELG 258
           ++D       AP +   I E E  +N LD     T + A  +G   A AN   +F+P++ 
Sbjct: 158 LADPGATNRAAPAISVIIPESETFNNTLD-HGVCTKFEASQLGDEVA-ANFTALFAPDIR 215

Query: 259 LCVEQPKPGFTM 270
              E+  PG T+
Sbjct: 216 ARAEKHLPGVTL 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,084,428
Number of Sequences: 62578
Number of extensions: 411752
Number of successful extensions: 1070
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 6
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)