Query psy11195
Match_columns 346
No_of_seqs 126 out of 145
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 20:34:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07289 DUF1448: Protein of u 100.0 1E-103 2E-108 764.5 20.9 269 1-277 53-339 (339)
2 PF07289 DUF1448: Protein of u 100.0 1.3E-71 2.8E-76 540.4 18.2 235 65-336 1-244 (339)
3 smart00683 DM16 Repeats in sea 99.9 1.2E-27 2.5E-32 179.0 7.6 55 88-142 1-55 (55)
4 smart00683 DM16 Repeats in sea 98.9 9.1E-10 2E-14 82.8 4.3 43 259-301 13-55 (55)
5 PF14470 bPH_3: Bacterial PH d 97.7 0.00061 1.3E-08 54.0 10.9 92 84-180 1-94 (96)
6 PF03517 Voldacs: Regulator of 96.0 0.032 7E-07 48.5 8.0 48 108-155 1-52 (135)
7 PF08000 bPH_1: Bacterial PH d 95.8 0.12 2.5E-06 45.0 10.5 87 84-181 27-120 (124)
8 PF02893 GRAM: GRAM domain; I 95.0 0.069 1.5E-06 40.5 5.8 60 82-142 7-68 (69)
9 smart00568 GRAM domain in gluc 95.0 0.072 1.6E-06 39.4 5.7 56 84-141 2-59 (61)
10 PF11605 Vps36_ESCRT-II: Vacuo 94.6 0.07 1.5E-06 43.8 5.1 68 79-146 5-77 (89)
11 KOG3294|consensus 85.5 1.1 2.5E-05 43.3 4.4 88 79-166 10-117 (261)
12 PF08567 TFIIH_BTF_p62_N: TFII 82.6 3.5 7.6E-05 33.0 5.4 50 108-157 14-67 (79)
13 KOG4471|consensus 58.3 26 0.00057 38.2 6.6 95 81-180 33-132 (717)
14 PF09380 FERM_C: FERM C-termin 55.8 51 0.0011 25.9 6.5 57 128-188 27-83 (90)
15 PF03703 bPH_2: Bacterial PH d 45.2 1.3E+02 0.0027 22.4 7.1 68 110-178 6-78 (80)
16 PF06115 DUF956: Domain of unk 44.8 68 0.0015 28.1 5.9 71 93-166 12-85 (118)
17 PF11729 Capsid-VNN: nodavirus 41.9 13 0.00029 37.0 1.3 32 315-346 118-153 (340)
18 PF14470 bPH_3: Bacterial PH d 35.1 58 0.0013 25.3 3.8 37 285-323 44-80 (96)
19 PF14363 AAA_assoc: Domain ass 24.1 1E+02 0.0022 25.3 3.5 43 56-98 43-89 (98)
20 PF04628 Sedlin_N: Sedlin, N-t 22.6 1E+02 0.0022 26.5 3.4 39 156-194 70-112 (132)
21 KOG1090|consensus 22.0 80 0.0017 36.9 3.2 72 50-122 751-839 (1732)
No 1
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=100.00 E-value=1.1e-103 Score=764.46 Aligned_cols=269 Identities=55% Similarity=0.954 Sum_probs=256.6
Q ss_pred CcccccCCceeEEEeeeeEEeEEEEeeecc------cce-------eeEEEEEeecCCCCc--cchhhHHHHHHHhhhch
Q psy11195 1 MWNSLSVLRINLSIGLACIQQVSTKVTFSP------MIY-------RTFEFIFTNLVPGNT--RHFTSVLGVYRAYNSSK 65 (346)
Q Consensus 1 iW~s~~~~r~NlSIG~~~i~~i~~~~~~sk------aL~-------~rfEFiFt~~~~~~~--rlf~~v~~v~raY~ts~ 65 (346)
||||.++||+|||||||||++|++|+++|| ||| +|||||||+++++++ |||++|++|||||+|||
T Consensus 53 iW~s~~~~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ts~ 132 (339)
T PF07289_consen 53 IWHSLKRPRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYETSR 132 (339)
T ss_pred EEeccCCCceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999998 899 999999999999999 89999999999999999
Q ss_pred hhhhhhhccceeccCcccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeecc
Q psy11195 66 LYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESK 145 (346)
Q Consensus 66 lyRelklR~~~I~~~~L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~SK 145 (346)
||||||||||||++|+|+|||+|+++++++||||+|+|||++|+|+|||+|+||||++|++|||||||+||.+|++|+||
T Consensus 133 lYRelklR~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne~fNVSiPylqi~~i~ir~SK 212 (339)
T PF07289_consen 133 LYRELKLRGAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNESFNVSIPYLQIKSIRIRDSK 212 (339)
T ss_pred HhhhhhhheeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCccccccchHhhheeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeccccEEEEEEeCCchhHHHHHHHHHHHHHHHhcCCCcceeeeeeehhhhcccCcccccccccccccccc
Q psy11195 146 FGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNM 225 (346)
Q Consensus 146 fG~ALvI~T~~~sg~y~fgFridp~ekl~~lfkei~sLhraY~~spiygve~~~e~~~~~~~~~~~~q~~i~~~~~d~e~ 225 (346)
||+||||+|++++|+|+||||+||+|||+++||||++||++|.++|+|||+|..|+++++.+. ..+.+.+||+|+
T Consensus 213 fG~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~sLh~vy~~~PifGVe~~~E~~~~~~~~-----~~~~~~~ddvE~ 287 (339)
T PF07289_consen 213 FGPALVIETSESSGGYVLGFRVDPEERLQELFKEIQSLHKVYSANPIFGVEYELEDAPQSLES-----PTVQRFEDDVEI 287 (339)
T ss_pred cceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCCcCceeeeccccccccc-----cccCccccceee
Confidence 999999999999999999999999999999999999999999999999999999999887765 456667777774
Q ss_pred ---cccccceeEeeeccCCCCcccCCCceeeecCcceeeecCCCCceEeeeeEEe
Q psy11195 226 ---LDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277 (346)
Q Consensus 226 ---~~~~~~l~~y~a~~~~g~~~~~~re~Vys~eLGLaiE~l~~G~tl~~LW~vv 277 (346)
+...|++++|+++++++ ..+|+||||+|||||||++|+|+||++||+|+
T Consensus 288 i~~~~~~d~~aaY~a~~~~~---~~dr~Pvys~eLGLAIEkL~~G~TLqdLW~Vi 339 (339)
T PF07289_consen 288 IDEEIETDAFAAYYADGNSK---GEDREPVYSPELGLAIEKLPEGFTLQDLWEVI 339 (339)
T ss_pred eccccccchhhheecccccc---CCCCCCccchhhCeeeecCCCCCcHHHhhcCC
Confidence 55567999999998765 68899999999999999999999999999885
No 2
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=100.00 E-value=1.3e-71 Score=540.40 Aligned_cols=235 Identities=33% Similarity=0.484 Sum_probs=212.8
Q ss_pred hhhhhhhhccceeccCcccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeec
Q psy11195 65 KLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRES 144 (346)
Q Consensus 65 ~lyRelklR~~~I~~~~L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S 144 (346)
.+|+|-.+|++ ++.++|+|+|||.+++++++|||||||+|+.|+|.|||||++|||..+|++||||||+||.+|++|..
T Consensus 1 ~~WqDreirFD-~~~~~l~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~~~~~ 79 (339)
T PF07289_consen 1 TLWQDREIRFD-VSASQLKLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNISTKTV 79 (339)
T ss_pred CCcccceEEec-CChhhcccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEEEEEe
Confidence 37899999999 79999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred --cc-e--eEEEEEEEeccccEEEEEEeCCchhH-HHHHHHHHHHHHHHhcCCCcceeeeeeehhhhcccCccccccccc
Q psy11195 145 --KF-G--LALVIESYEQSGGYVLGFRIDPQETM-QTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAE 218 (346)
Q Consensus 145 --Kf-G--~ALvI~T~~~sg~y~fgFridp~ekl-~~lfkei~sLhraY~~spiygve~~~e~~~~~~~~~~~~q~~i~~ 218 (346)
|. | +||||+|++++.||||+||....+.. ++||++++++||||+++++|| |++++
T Consensus 80 ~sklrg~teaL~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ts~lYR-elklR------------------ 140 (339)
T PF07289_consen 80 NSKLRGNTEALYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYETSRLYR-ELKLR------------------ 140 (339)
T ss_pred eccccCceeEEEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHHHHhHhh-hhhhh------------------
Confidence 43 5 89999999999999999995444433 379999999999999999998 33322
Q ss_pred ccccccccccccceeEeeeccCCCCcccCCCceeeecCcc---eeeecCCCCceEeeeeEEeeccCCCcccccceeeEEE
Q psy11195 219 LEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELG---LCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQI 295 (346)
Q Consensus 219 ~~~d~e~~~~~~~l~~y~a~~~~g~~~~~~re~Vys~eLG---LaiE~l~~G~tl~~LW~vv~~a~~~~~~nvsipy~q~ 295 (346)
++....|++...|+|.||+..-| |+.|+++.|+++.++-|+||||++||+||||||||||
T Consensus 141 -----------------~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne~fNVSiPylqi 203 (339)
T PF07289_consen 141 -----------------GAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNESFNVSIPYLQI 203 (339)
T ss_pred -----------------eeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCccccccchHhhh
Confidence 22233344557888999998888 9999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeEEEEEecccCcEEEEEeeChhhhhcccc
Q psy11195 296 ASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKIN 336 (346)
Q Consensus 296 ~~~~~r~skfg~alvi~t~~~~g~yvlgfr~dp~~~l~~~~ 336 (346)
++|++|+||||+||||||+++||||||||||||+|||++++
T Consensus 204 ~~i~ir~SKfG~aLVieT~~~sGgYVLGFRvDP~ErL~~l~ 244 (339)
T PF07289_consen 204 KSIRIRDSKFGPALVIETSESSGGYVLGFRVDPEERLQELF 244 (339)
T ss_pred eeeeeeccccceEEEEEEeccCCcEEEEEEcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999873
No 3
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=99.94 E-value=1.2e-27 Score=178.97 Aligned_cols=55 Identities=44% Similarity=0.857 Sum_probs=54.2
Q ss_pred ceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEe
Q psy11195 88 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLR 142 (346)
Q Consensus 88 E~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR 142 (346)
|+++++++||||+|||||++|+|+|||||+||||+++++|||||||+||.++++|
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~~r 55 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR 55 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999987
No 4
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=98.94 E-value=9.1e-10 Score=82.85 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.9
Q ss_pred eeeecCCCCceEeeeeEEeeccCCCcccccceeeEEEeeeeee
Q psy11195 259 LCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLR 301 (346)
Q Consensus 259 LaiE~l~~G~tl~~LW~vv~~a~~~~~~nvsipy~q~~~~~~r 301 (346)
+.-+++..|..+.++-|++|||++++.||+||||+||.++++|
T Consensus 13 ~kgn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~~r 55 (55)
T smart00683 13 TKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR 55 (55)
T ss_pred cCCCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEEeC
Confidence 3444555666667777999999999999999999999999987
No 5
>PF14470 bPH_3: Bacterial PH domain
Probab=97.70 E-value=0.00061 Score=53.95 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=74.7
Q ss_pred ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccC--CceeeeecceeEEEEEEeeccceeEEEEEEEeccccE
Q psy11195 84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMN--ESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGY 161 (346)
Q Consensus 84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n--~~fNlSIpY~qI~sI~iR~SKfG~ALvI~T~~~sg~y 161 (346)
|.|||.|.....|..+.. .....|.+++||=||+-+.... .....+|||..|.++..+...++..+-|+| ++..+
T Consensus 1 L~~~E~I~~~~~~~~~~~-~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~--~~~~~ 77 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF-FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET--NGEKI 77 (96)
T ss_pred CcCCCEEEEEEEEEEeec-ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE--CCEEE
Confidence 679999999999997766 6778999999999999998863 356799999999999999888888888888 66777
Q ss_pred EEEEEeCCchhHHHHHHHH
Q psy11195 162 VLGFRIDPQETMQTVCKEL 180 (346)
Q Consensus 162 ~fgFridp~ekl~~lfkei 180 (346)
.+..- +.+..+++.+.|
T Consensus 78 ~i~~i--~k~~~~~~~~~i 94 (96)
T PF14470_consen 78 KIDNI--QKGDVKEFYEYI 94 (96)
T ss_pred EEEEc--CHHHHHHHHHHH
Confidence 77642 445566555443
No 6
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=96.03 E-value=0.032 Score=48.54 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=28.6
Q ss_pred eeEEEEeeEEEEEeccCCceeeeecceeE--EEEEEee--ccceeEEEEEEE
Q psy11195 108 GVFMATNIRVVWYADMNESFNISLPYIQI--ASIRLRE--SKFGLALVIESY 155 (346)
Q Consensus 108 GtliVTNLRiVW~A~~n~~fNlSIpY~qI--~sI~iR~--SKfG~ALvI~T~ 155 (346)
|+|+|||=||+|++......-++|||-.| +.|+--. +...++||++--
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld 52 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLD 52 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEe
Confidence 89999999999999544677778888754 4544222 344589999973
No 7
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=95.83 E-value=0.12 Score=45.01 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=55.7
Q ss_pred ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEe---ccCCceee-eecceeEEEEEEeeccce---eEEEEEEEe
Q psy11195 84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYA---DMNESFNI-SLPYIQIASIRLRESKFG---LALVIESYE 156 (346)
Q Consensus 84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A---~~n~~fNl-SIpY~qI~sI~iR~SKfG---~ALvI~T~~ 156 (346)
|+|||+|+..+..+ +..++.||-|+|=.- .......+ ||||-.|....+..+-.. --|-| .-
T Consensus 27 L~~gE~I~~ayk~i---------RD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki--~i 95 (124)
T PF08000_consen 27 LLDGEEIEAAYKLI---------RDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKI--WI 95 (124)
T ss_dssp SSTT--EEEEEEES---------SEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEE--EE
T ss_pred cCCCCeeeeeehhh---------ceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEE--EE
Confidence 67999999999988 457999999999876 34455666 999999999999987321 22333 22
Q ss_pred ccccEEEEEEeCCchhHHHHHHHHH
Q psy11195 157 QSGGYVLGFRIDPQETMQTVCKELQ 181 (346)
Q Consensus 157 ~sg~y~fgFridp~ekl~~lfkei~ 181 (346)
.++.+..-|.........++++.+.
T Consensus 96 ~~~~~~i~~~f~k~~di~~i~k~L~ 120 (124)
T PF08000_consen 96 SGQGFPIEFEFKKKTDIYEIYKALA 120 (124)
T ss_dssp TTESSEEEEEEGTTSHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCCHHHHHHHHH
Confidence 3334433333333344555655443
No 8
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=95.04 E-value=0.069 Score=40.46 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=39.4
Q ss_pred ccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCc--eeeeecceeEEEEEEe
Q psy11195 82 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNES--FNISLPYIQIASIRLR 142 (346)
Q Consensus 82 L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~--fNlSIpY~qI~sI~iR 142 (346)
-.|-++|.+++..+ .+-.++.....|+|+|||=|+.-+|..... ..+.||+..|.+|+..
T Consensus 7 F~lp~~E~li~~~~-c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 7 FKLPEEERLIEEYS-CALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ----TT--EEEEEE-ETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred ccCCCCCeEEEEEE-EEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 34778899988876 222222677899999999999999954444 3799999999999753
No 9
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=95.04 E-value=0.072 Score=39.42 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=45.5
Q ss_pred ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCc-e-eeeecceeEEEEEE
Q psy11195 84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNES-F-NISLPYIQIASIRL 141 (346)
Q Consensus 84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~-f-NlSIpY~qI~sI~i 141 (346)
|.++|.+++...--.. ++.-.-|+++|||=|+.-+|..... . .+.||+-.|.+|+.
T Consensus 2 l~~~E~l~~~~~C~l~--~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 2 LPEEEKLIADYSCYLS--RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred cCCCcEEEEEEEeEEC--CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 6789999998775554 5567799999999999999965444 4 79999999998853
No 10
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=94.63 E-value=0.07 Score=43.81 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=46.6
Q ss_pred cCcccccCCceEeeeecCeee----ccCCCCceeeEEEEeeEEEEEeccCCc-eeeeecceeEEEEEEeeccc
Q psy11195 79 RKELKMLPREHIYSQYQGVWN----LSSDQGNLGVFMATNIRVVWYADMNES-FNISLPYIQIASIRLRESKF 146 (346)
Q Consensus 79 ~~~L~LlpgE~vid~l~gVen----tkgnqG~lGtliVTNLRiVW~A~~n~~-fNlSIpY~qI~sI~iR~SKf 146 (346)
.++-.|.|+|.++-.-+||-= .|..+=.-|++++|+-||+|.-+..+. ..++||...|..+..-.+-|
T Consensus 5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~ 77 (89)
T PF11605_consen 5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL 77 (89)
T ss_dssp CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT
T ss_pred ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc
Confidence 466679999999999999953 344445589999999999998776664 58999999999996554433
No 11
>KOG3294|consensus
Probab=85.52 E-value=1.1 Score=43.29 Aligned_cols=88 Identities=16% Similarity=0.303 Sum_probs=60.9
Q ss_pred cCc-ccccCCceEeeeecCeeecc---CC------CCceeeEEEEeeEEEEEeccC--CceeeeecceeEEEEEEeeccc
Q psy11195 79 RKE-LKMLPREHIYSQYQGVWNLS---SD------QGNLGVFMATNIRVVWYADMN--ESFNISLPYIQIASIRLRESKF 146 (346)
Q Consensus 79 ~~~-L~LlpgE~vid~l~gVentk---gn------qG~lGtliVTNLRiVW~A~~n--~~fNlSIpY~qI~sI~iR~SKf 146 (346)
+++ ..+..||.+++..|||+=+= .+ --..|++++||.|||.-+... .-..-=+|++-|+++++..--|
T Consensus 10 ~G~gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF 89 (261)
T KOG3294|consen 10 NGRGVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVF 89 (261)
T ss_pred CCceeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCccc
Confidence 444 67888999999999998321 11 124899999999999999872 2234558899999999888777
Q ss_pred e---eEEEEEEEecc-----ccEEEEEE
Q psy11195 147 G---LALVIESYEQS-----GGYVLGFR 166 (346)
Q Consensus 147 G---~ALvI~T~~~s-----g~y~fgFr 166 (346)
| .+=.|++-... -.|-+-|+
T Consensus 90 ~aNyikGtV~pvpgGg~~g~as~Kl~F~ 117 (261)
T KOG3294|consen 90 GANYIKGTVQPVPGGGWEGEASFKLTFN 117 (261)
T ss_pred ccceeeeeEeecCCCCccceeEEEEEec
Confidence 5 22233443333 35777776
No 12
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=82.63 E-value=3.5 Score=33.05 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=37.6
Q ss_pred eeEEEEeeE--EEEEeccCCcee-eeecceeEEEEEEeec-cceeEEEEEEEec
Q psy11195 108 GVFMATNIR--VVWYADMNESFN-ISLPYIQIASIRLRES-KFGLALVIESYEQ 157 (346)
Q Consensus 108 GtliVTNLR--iVW~A~~n~~fN-lSIpY~qI~sI~iR~S-KfG~ALvI~T~~~ 157 (346)
|+|.+|+=| +.|-........ +||+|..|.+.++-.. +-...|=|-.+..
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTS
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecC
Confidence 999999999 999998888876 9999999999877643 2224555554444
No 13
>KOG4471|consensus
Probab=58.30 E-value=26 Score=38.24 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred cccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccC-CceeeeecceeEEEEEEeeccc-ee-EEEEEEEec
Q psy11195 81 ELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMN-ESFNISLPYIQIASIRLRESKF-GL-ALVIESYEQ 157 (346)
Q Consensus 81 ~L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n-~~fNlSIpY~qI~sI~iR~SKf-G~-ALvI~T~~~ 157 (346)
...+||||.+++.--++.=+ | ...|+|.+||-||.--+.-. +.|=+-||+--|..+..|+.+. |. ..-|+..+.
T Consensus 33 ~~~~L~GE~i~~~~y~c~f~-G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~CK 109 (717)
T KOG4471|consen 33 PFPLLPGESIIDEKYICPFL-G--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEITCK 109 (717)
T ss_pred cccccCCcccccceeccccc-c--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEEec
Confidence 34589999999988777644 4 77999999999998877654 4578888888999999888432 53 333455554
Q ss_pred ccc-EEEEEEeCCchhHH-HHHHHH
Q psy11195 158 SGG-YVLGFRIDPQETMQ-TVCKEL 180 (346)
Q Consensus 158 sg~-y~fgFridp~ekl~-~lfkei 180 (346)
--| -.++|+ |.++-+ ..|..+
T Consensus 110 Dmr~lR~~fk--~~~q~r~~~~e~L 132 (717)
T KOG4471|consen 110 DMRNLRCAFK--QEEQCRRDWFERL 132 (717)
T ss_pred cccceeeecC--cccccHHHHHHHH
Confidence 444 567775 445444 455543
No 14
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=55.76 E-value=51 Score=25.94 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=47.1
Q ss_pred eeeecceeEEEEEEeeccceeEEEEEEEeccccEEEEEEeCCchhHHHHHHHHHHHHHHHh
Q psy11195 128 NISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHT 188 (346)
Q Consensus 128 NlSIpY~qI~sI~iR~SKfG~ALvI~T~~~sg~y~fgFridp~ekl~~lfkei~sLhraY~ 188 (346)
=...||..|.+|.-+..+ +.|++...+..=.+.|..+..+..+.|++.+..-|+-|-
T Consensus 27 ~~~f~W~~I~~l~~~~k~----F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~Ff~ 83 (90)
T PF09380_consen 27 TQFFPWSEISKLSFKKKK----FTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHTFFR 83 (90)
T ss_dssp SEEEEGGGEEEEEEETTE----EEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehhheeEEEecccE----EEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHHHhc
Confidence 458899999999988875 578887778889999999888888889999988888764
No 15
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=45.19 E-value=1.3e+02 Score=22.39 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=45.6
Q ss_pred EEEEeeEEEEEeccCCceeeeecceeEEEEEEeec----ccee-EEEEEEEeccccEEEEEEeCCchhHHHHHH
Q psy11195 110 FMATNIRVVWYADMNESFNISLPYIQIASIRLRES----KFGL-ALVIESYEQSGGYVLGFRIDPQETMQTVCK 178 (346)
Q Consensus 110 liVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S----KfG~-ALvI~T~~~sg~y~fgFridp~ekl~~lfk 178 (346)
+.+||=+++=.+-.-.+-...||+..|.+++++.+ ++|. .+.+.+..+++.- .....-+.+..+++.+
T Consensus 6 y~i~~~~l~i~~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~-~~i~~~~~~~a~~i~~ 78 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEK-IEIPFLSIEDAEEIYD 78 (80)
T ss_pred EEEECCEEEEEECeEEEEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCce-eEEecCCHHHHHHHHh
Confidence 66777777777766666778999999999999986 4464 6667776666533 3333334454554443
No 16
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=44.78 E-value=68 Score=28.08 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=54.4
Q ss_pred eecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeec---cceeEEEEEEEeccccEEEEEE
Q psy11195 93 QYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRES---KFGLALVIESYEQSGGYVLGFR 166 (346)
Q Consensus 93 ~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S---KfG~ALvI~T~~~sg~y~fgFr 166 (346)
..+|++=+. -+.-|.++|-+==+=.|.+.|++=+|=|||-.|..|...-+ |+.+-..|.|+ .+|.|.|-=+
T Consensus 12 ~~~ats~~g--~~~yGkimiGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk-~~G~f~Fssk 85 (118)
T PF06115_consen 12 TTKATSYLG--LGKYGKIMIGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTK-KNGKFTFSSK 85 (118)
T ss_pred EEeeEEEec--ccccCeEEEcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEEC-CCCEEEEEEC
Confidence 344554332 35788999999889999999999999999999999877665 55566889988 5677776543
No 17
>PF11729 Capsid-VNN: nodavirus capsid protein ; InterPro: IPR024292 The capsid or coat protein of this family is expressed in Nodaviridae, that are ssRNA positive-strand viruses, with no DNA stage. These viruses are the causative agents of viral nervous necrosis in marine fish [].
Probab=41.86 E-value=13 Score=36.99 Aligned_cols=32 Identities=44% Similarity=0.788 Sum_probs=21.8
Q ss_pred cccCcEEEEEeeChhhhh---ccc-ccccceeeeeC
Q psy11195 315 EQSGGYVLGFRIDPQVRT---KKI-NCRGDVVVKTW 346 (346)
Q Consensus 315 ~~~g~yvlgfr~dp~~~l---~~~-~~~~~~~~~~~ 346 (346)
-..||||.||-.||.+-- +-| .-|+-++-|.|
T Consensus 118 nTGGGYVagFl~DPtd~d~t~~AlqatrGa~vaKwW 153 (340)
T PF11729_consen 118 NTGGGYVAGFLPDPTDGDHTFDALQATRGAVVAKWW 153 (340)
T ss_pred ccCCceEEEEcCCCCcccHHHHHHHHhccceehhhh
Confidence 356899999999998532 211 13666777777
No 18
>PF14470 bPH_3: Bacterial PH domain
Probab=35.15 E-value=58 Score=25.31 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=30.9
Q ss_pred ccccceeeEEEeeeeeecccceeeEEEEEecccCcEEEE
Q psy11195 285 SFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLG 323 (346)
Q Consensus 285 ~~nvsipy~q~~~~~~r~skfg~alvi~t~~~~g~yvlg 323 (346)
.-..++||=+|.+|......++..+.|+| ..+.+.++
T Consensus 44 ~~~~~i~y~~I~~v~~~~g~~~~~i~i~~--~~~~~~i~ 80 (96)
T PF14470_consen 44 KKFESIPYDDITSVSFKKGILGGKITIET--NGEKIKID 80 (96)
T ss_pred ceEEEEEhhheEEEEEEccccccEEEEEE--CCEEEEEE
Confidence 34589999999999999999999999999 44556655
No 19
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=24.10 E-value=1e+02 Score=25.27 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=28.2
Q ss_pred HHHHHhhhchhhhhh-hhccceeccC---cccccCCceEeeeecCee
Q psy11195 56 GVYRAYNSSKLYRDL-KLRGAIVRRK---ELKMLPREHIYSQYQGVW 98 (346)
Q Consensus 56 ~v~raY~ts~lyRel-klR~~~I~~~---~L~LlpgE~vid~l~gVe 98 (346)
..-++|=+|++=.+. +||..-..++ .|.|-+||.|.|.++||.
T Consensus 43 ~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~V~D~F~Gv~ 89 (98)
T PF14363_consen 43 DAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEEVVDVFEGVK 89 (98)
T ss_pred HHHHHHHhhccCcccceeeecccCCCCceEEecCCCCEEEEEECCEE
Confidence 455677777764432 3444333322 367899999999999984
No 20
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=22.55 E-value=1e+02 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=29.1
Q ss_pred eccccEEEEEE----eCCchhHHHHHHHHHHHHHHHhcCCCcc
Q psy11195 156 EQSGGYVLGFR----IDPQETMQTVCKELQSYHRIHTTTPEYG 194 (346)
Q Consensus 156 ~~sg~y~fgFr----idp~ekl~~lfkei~sLhraY~~spiyg 194 (346)
.++-+|++++. ....+.++.+|+++..++-.+..+|.|-
T Consensus 70 ~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~ 112 (132)
T PF04628_consen 70 NTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKALCNPFYQ 112 (132)
T ss_dssp TT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHHTSTTCG
T ss_pred cCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHccCCCCC
Confidence 34446888887 3345678889999999999999999993
No 21
>KOG1090|consensus
Probab=21.99 E-value=80 Score=36.91 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=45.6
Q ss_pred chhhHHHHHHHhhhc--hhhhhhhhccceeccCc--ccccCCceEeee-------ecCeee-ccCCCC-----ceeeEEE
Q psy11195 50 HFTSVLGVYRAYNSS--KLYRDLKLRGAIVRRKE--LKMLPREHIYSQ-------YQGVWN-LSSDQG-----NLGVFMA 112 (346)
Q Consensus 50 lf~~v~~v~raY~ts--~lyRelklR~~~I~~~~--L~LlpgE~vid~-------l~gVen-tkgnqG-----~lGtliV 112 (346)
|-.-|+.+-.+.--| ..|+|.+ |+.-++... -.|+|||.++.- -+|=|+ +++|.| --|.++.
T Consensus 751 lh~mvp~~V~mHiEsLe~Vy~E~~-r~phlqKp~~~P~LlpGE~lv~D~lrcyLlpdgrE~e~~~~~~~~LlPAeGalFL 829 (1732)
T KOG1090|consen 751 LHSMVPTYVEMHIESLEDVYVEMS-RGPHLQKPNFDPVLLPGEFLVSDPLRCYLLPDGRESEMSLNRLENLLPAEGALFL 829 (1732)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhc-cCCcccCCCCCccccCchhhccCCceEEEecCcccccccccccccccccCcceEE
Confidence 334455555554433 4789998 887677553 349999998752 133333 333432 2599999
Q ss_pred EeeEEEEEec
Q psy11195 113 TNIRVVWYAD 122 (346)
Q Consensus 113 TNLRiVW~A~ 122 (346)
||-|+|.--.
T Consensus 830 TnYRVIFkG~ 839 (1732)
T KOG1090|consen 830 TNYRVIFKGK 839 (1732)
T ss_pred eeeEEEecCC
Confidence 9999998643
Done!