Query psy11195
Match_columns 346
No_of_seqs 126 out of 145
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 20:34:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lw3_A Myotubularin-related pr 97.4 0.0005 1.7E-08 72.3 9.4 119 64-183 58-185 (657)
2 1zsq_A Myotubularin-related pr 97.2 0.00084 2.9E-08 69.0 9.3 104 78-183 3-113 (528)
3 2cay_A VPS36 PH domain, vacuol 97.0 0.0035 1.2E-07 54.3 9.5 95 77-171 18-122 (145)
4 2hth_B Vacuolar protein sortin 96.7 0.011 3.9E-07 50.6 10.1 91 80-170 9-117 (140)
5 1zyi_A Methylosome subunit pic 95.4 0.05 1.7E-06 48.5 8.2 69 86-156 19-93 (171)
6 3b77_A Uncharacterized protein 93.0 0.77 2.6E-05 41.6 10.8 95 83-186 21-124 (193)
7 3hsa_A Pleckstrin homology dom 91.0 1.7 5.9E-05 36.8 10.0 87 83-180 27-120 (126)
8 1pfj_A TFIIH basal transcripti 90.7 0.9 3.1E-05 37.7 7.8 79 86-169 4-83 (108)
9 2yf0_A Myotubularin-related pr 89.2 1.5 5.2E-05 44.9 9.7 86 92-183 7-98 (512)
10 1w7p_D VPS36P, YLR417W; ESCRT- 65.1 1.3 4.5E-05 45.9 0.0 62 80-141 13-79 (566)
11 2atz_A H. pylori predicted cod 24.6 28 0.00096 31.0 1.6 23 271-293 143-166 (180)
No 1
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=97.35 E-value=0.0005 Score=72.33 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=71.5
Q ss_pred chhhhhhh-hcccee--ccCcccccCCceEeeeecCeeeccCCC-CceeeEEEEeeEEEEEeccC-CceeeeecceeEEE
Q psy11195 64 SKLYRDLK-LRGAIV--RRKELKMLPREHIYSQYQGVWNLSSDQ-GNLGVFMATNIRVVWYADMN-ESFNISLPYIQIAS 138 (346)
Q Consensus 64 s~lyRelk-lR~~~I--~~~~L~LlpgE~vid~l~gVentkgnq-G~lGtliVTNLRiVW~A~~n-~~fNlSIpY~qI~s 138 (346)
+.+-+|++ ||.+.. ....+.|||||.++...++|--..... ...|+|++||-||++.+... +.+.+.||+.+|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~ 137 (657)
T 1lw3_A 58 DNFSPDLRVLRESNKLAEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINR 137 (657)
T ss_dssp -------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEE
T ss_pred cchhhhhhhhhcccccccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEE
Confidence 33445555 555432 235788999999999999997544333 36899999999999998643 46889999999999
Q ss_pred EEEee--cccee-EEEEEEEecccc-EEEEEEeCCchhHHHHHHHHHHH
Q psy11195 139 IRLRE--SKFGL-ALVIESYEQSGG-YVLGFRIDPQETMQTVCKELQSY 183 (346)
Q Consensus 139 I~iR~--SKfG~-ALvI~T~~~sg~-y~fgFridp~ekl~~lfkei~sL 183 (346)
|.... +..|. .-.|+-.+..-+ +.|.|.-+. +...++|..+..+
T Consensus 138 Iekv~g~s~~g~~~~~l~I~CKDfR~~~f~f~~~~-~~~~~v~~~L~~~ 185 (657)
T 1lw3_A 138 VEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEG-RTRRSIFENLMKY 185 (657)
T ss_dssp EEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGG-CCHHHHHHHHHHH
T ss_pred EEecCCCcccCCCCceEEEEecCCcEEEEEeCCcc-chHHHHHHHHHHH
Confidence 97653 12221 223444555555 667775221 2345688777654
No 2
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=97.23 E-value=0.00084 Score=69.04 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=71.7
Q ss_pred ccCcccccCCceEeeeecCeeeccCC-CCceeeEEEEeeEEEEEeccC-CceeeeecceeEEEEEEeec--ccee-EEEE
Q psy11195 78 RRKELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVWYADMN-ESFNISLPYIQIASIRLRES--KFGL-ALVI 152 (346)
Q Consensus 78 ~~~~L~LlpgE~vid~l~gVentkgn-qG~lGtliVTNLRiVW~A~~n-~~fNlSIpY~qI~sI~iR~S--KfG~-ALvI 152 (346)
+...+.|||||.++...++|.-.... .+..|+|.+||-|+++.+... +.+.++||+.+|..|..... ..|. .-.|
T Consensus 3 ~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l 82 (528)
T 1zsq_A 3 SMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGL 82 (528)
T ss_dssp -CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEE
T ss_pred CCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceE
Confidence 45678899999999999999865432 356899999999999998643 36889999999999976531 2222 2234
Q ss_pred EEEecccc-EEEEEEeCCc-hhHHHHHHHHHHH
Q psy11195 153 ESYEQSGG-YVLGFRIDPQ-ETMQTVCKELQSY 183 (346)
Q Consensus 153 ~T~~~sg~-y~fgFridp~-ekl~~lfkei~sL 183 (346)
+-.+..-+ +.|.|. +. +..+++|..+..+
T Consensus 83 ~I~CKDfr~~~f~f~--~~~~~~~~v~~~L~~~ 113 (528)
T 1zsq_A 83 ETVCKDIRNLRFAHK--PEGRTRRSIFENLMKY 113 (528)
T ss_dssp EEEETTTEEEEEECC--GGGCCHHHHHHHHHHH
T ss_pred EEEccCCeEEEEEec--CchHHHHHHHHHHHHH
Confidence 44454555 556664 33 2245688776654
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=96.99 E-value=0.0035 Score=54.28 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=72.5
Q ss_pred eccCcccccCCceEeeeecCeeeccC----CCCceeeEEEEeeEEEEEeccCCc-eeeeecceeEEEEEEeecccee---
Q psy11195 77 VRRKELKMLPREHIYSQYQGVWNLSS----DQGNLGVFMATNIRVVWYADMNES-FNISLPYIQIASIRLRESKFGL--- 148 (346)
Q Consensus 77 I~~~~L~LlpgE~vid~l~gVentkg----nqG~lGtliVTNLRiVW~A~~n~~-fNlSIpY~qI~sI~iR~SKfG~--- 148 (346)
..+++-.|+|||.++-..++|.=--| .+=+-|++++||=||||-....+. ..+|+|+..|.++.+...-||.
T Consensus 18 t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s~K 97 (145)
T 2cay_A 18 TSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPR 97 (145)
T ss_dssp CTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCE
T ss_pred ccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccCce
Confidence 45678889999999999999863333 345689999999999999888777 8999999999999998766652
Q ss_pred -EEEEEE-EeccccEEEEEEeCCch
Q psy11195 149 -ALVIES-YEQSGGYVLGFRIDPQE 171 (346)
Q Consensus 149 -ALvI~T-~~~sg~y~fgFridp~e 171 (346)
.|.+.. .....-+-|-|+--.+.
T Consensus 98 i~l~~~p~~~~~~~~KLsFk~GGa~ 122 (145)
T 2cay_A 98 LILFFKDPSSSTEFVQLSFRKSDGV 122 (145)
T ss_dssp EEEEESSCSSTTCCEEEEESSSCCH
T ss_pred EEEEecCCCCCceEEEEEEcCCCch
Confidence 333333 23444689999865543
No 4
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=96.66 E-value=0.011 Score=50.64 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=69.1
Q ss_pred CcccccCCceEeeeecCeeeccCC---CCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeecccee----EEEE
Q psy11195 80 KELKMLPREHIYSQYQGVWNLSSD---QGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGL----ALVI 152 (346)
Q Consensus 80 ~~L~LlpgE~vid~l~gVentkgn---qG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~SKfG~----ALvI 152 (346)
++-.|.|||.++-..++|.=--|+ +=..|++++|+-||+|.....+..-++||+..|.++.....-||. .|.+
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l 88 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHL 88 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEE
T ss_pred CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeeccccccCceEEEEe
Confidence 445589999999999999633333 346899999999999998877789999999999999988765543 3555
Q ss_pred EEEe-----------ccccEEEEEEeCCc
Q psy11195 153 ESYE-----------QSGGYVLGFRIDPQ 170 (346)
Q Consensus 153 ~T~~-----------~sg~y~fgFridp~ 170 (346)
.... .+.-+-|-|+.-.+
T Consensus 89 ~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~ 117 (140)
T 2hth_B 89 HPAPPNKEPGPFQSSKNSYIKLSFKEHGQ 117 (140)
T ss_dssp CCCCCCSSSCCCSTTSCCEEEEEETTSCH
T ss_pred cCCCccCCCCCcccccCcEEEEEEcCCCC
Confidence 4422 23448999986544
No 5
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=95.40 E-value=0.05 Score=48.48 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=42.4
Q ss_pred CC--ceEeeeecCeeeccCCC-CceeeEEEEeeEEEEEeccCCceeeeecceeE--EEEEEeeccc-eeEEEEEEEe
Q psy11195 86 PR--EHIYSQYQGVWNLSSDQ-GNLGVFMATNIRVVWYADMNESFNISLPYIQI--ASIRLRESKF-GLALVIESYE 156 (346)
Q Consensus 86 pg--E~vid~l~gVentkgnq-G~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI--~sI~iR~SKf-G~ALvI~T~~ 156 (346)
|+ |.|.-+.++|.=.=+.. --.|+|+||+=||+|++. ....+||||-+| ..|.--.+.| .++||++-..
T Consensus 19 p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~--~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~ 93 (171)
T 1zyi_A 19 PGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDG--SGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNA 93 (171)
T ss_dssp --------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEET--TTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEEC
T ss_pred CCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcC--CCcEEEeecCeEEEEEEecCCCCCCCceEEEEEec
Confidence 55 66655555554322221 126999999999999998 568888888764 4553333444 4899999764
No 6
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=93.04 E-value=0.77 Score=41.64 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=65.3
Q ss_pred cccC--CceEeeeecCeeeccCCCCceeeEEEEeeEEEEEec----cCCceeeeecce--eEEEEEEeec-cceeEEEEE
Q psy11195 83 KMLP--REHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYAD----MNESFNISLPYI--QIASIRLRES-KFGLALVIE 153 (346)
Q Consensus 83 ~Llp--gE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~----~n~~fNlSIpY~--qI~sI~iR~S-KfG~ALvI~ 153 (346)
-|+| ||+|+..+..+-| .++.||-|||=.-. ....-=.||||. .|..+.+..+ .|-.--=|.
T Consensus 21 ~Ll~EdgE~I~~ayk~irD---------~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElk 91 (193)
T 3b77_A 21 YVLHEDGEKIYFLIKSKTD---------EYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIK 91 (193)
T ss_dssp GSCGGGTCCEEEEEECSSE---------EEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEE
T ss_pred hccCCCCCEEeeeeeecce---------EEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEE
Confidence 3789 9999999998876 79999999998872 223445699999 9999999976 332221222
Q ss_pred EEeccccEEEEEEeCCchhHHHHHHHHHHHHHH
Q psy11195 154 SYEQSGGYVLGFRIDPQETMQTVCKELQSYHRI 186 (346)
Q Consensus 154 T~~~sg~y~fgFridp~ekl~~lfkei~sLhra 186 (346)
-.-.++.|.+=|.=...+..++++|.+..|-..
T Consensus 92 i~i~~~~~~Ief~K~~~~di~~lyk~L~~is~~ 124 (193)
T 3b77_A 92 FEIGGKHYSIDVDKKQLEHVKDLYKALLAIAEK 124 (193)
T ss_dssp EEETTEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEcCceEEEEeCCcchhhHHHHHHHHHHHHHH
Confidence 222344577766532245677888887777443
No 7
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=91.05 E-value=1.7 Score=36.83 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=60.6
Q ss_pred cccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEecc----CCceeeeecceeEEEEEEeec-cce--eEEEEEEE
Q psy11195 83 KMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADM----NESFNISLPYIQIASIRLRES-KFG--LALVIESY 155 (346)
Q Consensus 83 ~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~----n~~fNlSIpY~qI~sI~iR~S-KfG--~ALvI~T~ 155 (346)
-|.|||+++..+..+- ..++.||-|+|=.-.. ...-=.||||-.|....+.++ .|- --|-|-++
T Consensus 27 ~L~~gE~I~~ayk~iR---------D~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~is 97 (126)
T 3hsa_A 27 ILGDNEELQLAYXMVR---------DLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWIS 97 (126)
T ss_dssp GSCTTCCEEEEEECSS---------EEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEET
T ss_pred hcCCCCEEEEEehhcC---------ceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEc
Confidence 4899999999998875 5799999999987643 233456999999999999986 443 13444444
Q ss_pred eccccEEEEEEeCCchhHHHHHHHH
Q psy11195 156 EQSGGYVLGFRIDPQETMQTVCKEL 180 (346)
Q Consensus 156 ~~sg~y~fgFridp~ekl~~lfkei 180 (346)
...--+++-|+=+ ....++++.+
T Consensus 98 g~~~pi~~~f~k~--~di~~i~k~L 120 (126)
T 3hsa_A 98 GQHEPLVXELXRG--TDVVGIQXTI 120 (126)
T ss_dssp TCSSCEEEEECTT--SCHHHHHHHH
T ss_pred CCceEEEEeccCc--ccHHHHHHHH
Confidence 4433378888532 3455555543
No 8
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=90.69 E-value=0.9 Score=37.68 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEee-ccceeEEEEEEEeccccEEEE
Q psy11195 86 PREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRE-SKFGLALVIESYEQSGGYVLG 164 (346)
Q Consensus 86 pgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~-SKfG~ALvI~T~~~sg~y~fg 164 (346)
..|+++=+++.|--=|.+ |+|.++.=||.|-.+..+.+-+|++|..|.+.++-. .|-.--|=|--+ +.+.|.|-
T Consensus 4 ~~~~~ll~v~~v~yKK~d----GtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~-~~~~~~F~ 78 (108)
T 1pfj_A 4 SSEEVLLIVKKVRQKKQD----GALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLH-AGDTTNFH 78 (108)
T ss_dssp SSCCEEEEESCCBCSSCB----CEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECS-SSCEEEEE
T ss_pred cchheeEEehhheeecCC----ceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEe-CCCceEEE
Confidence 467888888888766666 999999999999999999999999999999987764 232233433333 25789999
Q ss_pred EEeCC
Q psy11195 165 FRIDP 169 (346)
Q Consensus 165 Fridp 169 (346)
|+...
T Consensus 79 Ftn~~ 83 (108)
T 1pfj_A 79 FSNES 83 (108)
T ss_dssp CCCSS
T ss_pred EcCcH
Confidence 98743
No 9
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=89.18 E-value=1.5 Score=44.93 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=55.2
Q ss_pred eeecCeeecc----CCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeec-cceeEEEEEEEecccc-EEEEE
Q psy11195 92 SQYQGVWNLS----SDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRES-KFGLALVIESYEQSGG-YVLGF 165 (346)
Q Consensus 92 d~l~gVentk----gnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S-KfG~ALvI~T~~~sg~-y~fgF 165 (346)
.++++|--+. +..+..|+|.+||-|++..++... -+.||+..|.+|..+.. .-|..|.|.+ ..-+ +.|.|
T Consensus 7 ~~v~~V~l~~~~~~~~~~~~GtL~lTn~~LiF~~~~~~--e~wi~~~~I~~VeK~~~~~~~~~l~I~C--KDfr~~~f~f 82 (512)
T 2yf0_A 7 TKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQK--ETWILHHHIASVEKLALTTSGCPLVIQC--KNFRTVHFIV 82 (512)
T ss_dssp EEEEECCCC--------CCEEEEEECSSEEEEEESSSC--EEEEEGGGEEEEEECCCBTTBEEEEEEE--TTSCEEEEEE
T ss_pred CccccEEEEeccCCCCCceeEEEEEECCEEEEeCCCCC--ceEecccceeEEEEecCCCCCceEEEEe--cCCcEEEEEe
Confidence 4566665432 356889999999999999996544 36789999999976542 3344555444 4444 56666
Q ss_pred EeCCchhHHHHHHHHHHH
Q psy11195 166 RIDPQETMQTVCKELQSY 183 (346)
Q Consensus 166 ridp~ekl~~lfkei~sL 183 (346)
. ..+...++|..+..+
T Consensus 83 ~--~~~~~~~v~~sL~~~ 98 (512)
T 2yf0_A 83 P--RERDCHDIYNSLLQL 98 (512)
T ss_dssp S--CHHHHHHHHHHHHHH
T ss_pred C--ChHHHHHHHHHHHhh
Confidence 4 334455688777665
No 10
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=65.10 E-value=1.3 Score=45.91 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred CcccccCCceEeeeecCee----eccCCCCceeeEEEEeeEEEEEeccCCc-eeeeecceeEEEEEE
Q psy11195 80 KELKMLPREHIYSQYQGVW----NLSSDQGNLGVFMATNIRVVWYADMNES-FNISLPYIQIASIRL 141 (346)
Q Consensus 80 ~~L~LlpgE~vid~l~gVe----ntkgnqG~lGtliVTNLRiVW~A~~n~~-fNlSIpY~qI~sI~i 141 (346)
.+=.|+|+|.++-.-++|- +.|--+=.-|++++|+-||+|..+..|+ ..++|+.-.|..+..
T Consensus 13 ~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~e~ 79 (566)
T 1w7p_D 13 GQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNY 79 (566)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEEEecCCCCcceEEEEEhHHcceeee
Confidence 4556899999998888885 3344455689999999999999999888 999999999988864
No 11
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=24.57 E-value=28 Score=30.97 Aligned_cols=23 Identities=43% Similarity=0.949 Sum_probs=19.6
Q ss_pred eeeeEEeeccCCCccccc-ceeeE
Q psy11195 271 ARLWEVIPSSDMNESFNI-SLPYI 293 (346)
Q Consensus 271 ~~LW~vv~~a~~~~~~nv-sipy~ 293 (346)
..=|++.|.+++-++||| .+||=
T Consensus 143 pkeWr~fPs~dlP~~fNIltLPYe 166 (180)
T 2atz_A 143 PKEWKVFPSNEWPKEFNILALPYE 166 (180)
T ss_dssp CCCEEEESCTTSCGGGCEEECCCE
T ss_pred ccceeeCCCccCChhcceeeccHH
Confidence 345999999999999997 67874
Done!