RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11195
(346 letters)
>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448). This
family consists of several eukaryotic proteins of around
375 residues in length. The function of this family is
unknown. It appears that this family includes a
divergent GRAM domain.
Length = 339
Score = 329 bits (846), Expect = e-112
Identities = 131/295 (44%), Positives = 189/295 (64%), Gaps = 26/295 (8%)
Query: 1 MWNSLSVLRINLSIGLACIQQVSTKVTFS------PMIYRT-------FEFIFTNLVPGN 47
+W+S R+NLSIG I ++T+ S +Y FEFIFTN+ +
Sbjct: 53 IWHSKVNPRVNLSIGYNTITNINTRTVNSRLRGSTEALYILAKAGSTRFEFIFTNVSRES 112
Query: 48 TRH--FTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQG 105
+ F SV V+RAY +++LYR+LKLRGAI++ +L +LP E + S+ GVWNLSSDQG
Sbjct: 113 SSQSLFASVFDVWRAYQTTRLYRELKLRGAIIQDGQLNLLPDEQVISRVNGVWNLSSDQG 172
Query: 106 NLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGF 165
NLG F TNIR+VW+A+MNESFNIS+PY+QI+S+R+RESKFG ALVIE+ GGYVLGF
Sbjct: 173 NLGTFFVTNIRLVWFAEMNESFNISIPYLQISSLRVRESKFGPALVIETSSTGGGYVLGF 232
Query: 166 RIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ---EDIAELEED 222
R+DP E + + KE S H+++T P +G++Y + + A E VQ +D+ E++ +
Sbjct: 233 RVDPAEKLDELFKECNSLHKVYTENPIFGIEYEL-EDADQRLEGKAVQRREDDVEEVDTE 291
Query: 223 DNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
N ++ Y AD GG+ +R+ V+ PELGL +E+ + G+T+ LW V+
Sbjct: 292 IN----TDAFAAYYAD---GGSGGEDREPVYCPELGLAIEKLRNGYTLQDLWNVV 339
Score = 100 bits (250), Expect = 6e-24
Identities = 35/52 (67%), Positives = 45/52 (86%)
Query: 280 SDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVR 331
++MNESFNIS+PY+QI+S+R+RESKFG ALVIE+ GGYVLGFR+DP +
Sbjct: 188 AEMNESFNISIPYLQISSLRVRESKFGPALVIETSSTGGGYVLGFRVDPAEK 239
Score = 43.5 bits (103), Expect = 9e-05
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 80 KELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASI 139
+LK+ P E + + V + + G+ GV + TN+R++W++ +N N+S+ Y I +I
Sbjct: 15 SKLKLRPGEKLLALLSSVEDTKGNNGDRGVLLVTNLRLIWHSKVNPRVNLSIGYNTITNI 74
Query: 140 RLRE 143
R
Sbjct: 75 NTRT 78
>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41.4, worm R01H10.6, fly
CG1126 etc.
Length = 55
Score = 85.8 bits (213), Expect = 2e-21
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 88 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLR 142
E + ++ GV + + G+LGVF TN+R+VW++D N FNIS+ Y+QI ++R+R
Sbjct: 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR 55
Score = 36.1 bits (84), Expect = 0.002
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 280 SDMNESFNISLPYIQIASIRLR 301
SD N FNIS+ Y+QI ++R+R
Sbjct: 34 SDTNPRFNISVGYLQITNVRVR 55
Score = 29.5 bits (67), Expect = 0.26
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MWNSLSVLRINLSIGLACIQQVSTK 25
+W+S + R N+S+G I V +
Sbjct: 31 VWHSDTNPRFNISVGYLQITNVRVR 55
>gnl|CDD|144673 pfam01166, TSC22, TSC-22/dip/bun family.
Length = 57
Score = 28.5 bits (64), Expect = 0.65
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 207 EEAPVVQEDIAELEEDDNMLDLSNTL 232
EE V++E I ELEE ++ L+ NTL
Sbjct: 14 EEVEVLKEQIKELEEKNSQLERENTL 39
>gnl|CDD|221428 pfam12115, Salp15, Salivary protein of 15kDa inhibits CD4+ T cell
activation. This is a family of 15kDa salivary proteins
from Acari Arachnids that is induced on feeding and
assists the parasite to remain attached to its arthropod
host. By repressing calcium fluxes triggered by TCR
engagement, Salp15 inhibits CD4+ T cell activation.
Salp15 shows weak similarity to Inhibin A, a member of
the TGF-beta superfamily that inhibits the production of
cytokines and the proliferation of T cells.
Length = 112
Score = 29.7 bits (67), Expect = 0.91
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 146 FGLALVIESYEQSGGYVLG----FRIDPQ----ETMQTVCKELQSYHRIHTTT 190
FGL ES S + G D + + C E + I+
Sbjct: 10 FGLCSCEESSSSSPDNIGGNLPDLIGDCKTELALQLLQRCSEKHYFTAINDKL 62
>gnl|CDD|173891 cd06903, lectin_EMP46_EMP47, EMP46 and EMP47 type 1 transmembrane
proteins, N-terminal lectin domain. EMP46 and EMP47,
N-terminal carbohydrate recognition domain. EMP46 and
EMP47 are fungal type-I transmembrane proteins that
cycle between the endoplasmic reticulum and the golgi
apparatus and are thought to function as cargo receptors
that transport newly synthesized glycoproteins. EMP47
is a receptor for EMP46 responsible for the selective
transport of EMP46 by forming hetero-oligomerization
between the two proteins. EMP46 and EMP47 have an
N-terminal lectin-like carbohydrate recognition domain
(represented by this alignment model) as well as a
C-terminal transmembrane domain. EMP46 and EMP47 are 45%
sequence-identical to one another and have sequence
homology to a class of intracellular lectins defined by
ERGIC-53 and VIP36. L-type lectins have a dome-shaped
beta-barrel carbohydrate recognition domain with a
curved seven-stranded beta-sheet referred to as the
"front face" and a flat six-stranded beta-sheet referred
to as the "back face". This domain homodimerizes so
that adjacent back sheets form a contiguous 12-stranded
sheet and homotetramers occur by a back-to-back
association of these homodimers. Though L-type lectins
exhibit both sequence and structural similarity to one
another, their carbohydrate binding specificities differ
widely.
Length = 215
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 144 SKF-GLALVIESYEQSGGYVLGF 165
SKF GL L+I++ SGG + GF
Sbjct: 100 SKFDGLQLLIDNNGGSGGSLRGF 122
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 303 SKF-GLALVIESYEQSGGYVLGF 324
SKF GL L+I++ SGG + GF
Sbjct: 100 SKFDGLQLLIDNNGGSGGSLRGF 122
>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2)
domain found in SH2 domains, ANK, and kinase domain
(shark) proteins. These non-receptor protein-tyrosine
kinases contain two SH2 domains, five ankyrin (ANK)-like
repeats, and a potential tyrosine phosphorylation site
in the carboxyl-terminal tail which resembles the
phosphorylation site in members of the src family. Like,
mammalian non-receptor protein-tyrosine kinases, ZAP-70
and syk proteins, they do not have SH3 domains. However,
the presence of ANK makes these unique among
protein-tyrosine kinases. Both tyrosine kinases and ANK
repeats have been shown to transduce developmental
signals, and SH2 domains are known to participate
intimately in tyrosine kinase signaling. These tyrosine
kinases are believed to be involved in epithelial cell
polarity. The members of this family include the shark
(SH2 domains, ANK, and kinase domain) gene in Drosophila
and yellow fever mosquitos, as well as the hydra protein
HTK16. Drosophila Shark is proposed to transduce
intracellularly the Crumbs, a protein necessary for
proper organization of ectodermal epithelia,
intercellular signal. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 81
Score = 27.7 bits (62), Expect = 2.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 306 GLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGD 340
GL LV ES G YVL +V +I G+
Sbjct: 25 GLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHGE 59
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 28.7 bits (65), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 203 AILAEEAPVVQEDIAELEEDD------NMLDLSNT 231
A++ P+V IA+LE DD N L L N
Sbjct: 369 ALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNP 403
>gnl|CDD|236777 PRK10857, PRK10857, DNA-binding transcriptional regulator IscR;
Provisional.
Length = 164
Score = 27.9 bits (62), Expect = 5.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 277 IPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLG 323
+P +D++E ISL Y++ RLR++ LV GGY+LG
Sbjct: 26 VPLADISERQGISLSYLEQLFSRLRKN----GLVSSVRGPGGGYLLG 68
>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2)
domain found in SH2 domain Phosphatases (SHP) proteins.
The SH2 domain phosphatases (SHP-1, SHP-2/Syp,
Drosophila corkscrew (csw), and Caenorhabditis elegans
Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic
signaling enzymes. They are both targeted and regulated
by interactions of their SH2 domains with
phosphotyrosine docking sites. These proteins contain
two SH2 domains (N-SH2, C-SH2) followed by a tyrosine
phosphatase (PTP) domain, and a C-terminal extension.
Shp1 and Shp2 have two tyrosyl phosphorylation sites in
their C-tails, which are phosphorylated differentially
by receptor and nonreceptor PTKs. Csw retains the
proximal tyrosine and Ptp-2 lacks both sites.
Shp-binding proteins include receptors, scaffolding
adapters, and inhibitory receptors. Some of these bind
both Shp1 and Shp2 while others bind only one. Most
proteins that bind a Shp SH2 domain contain one or more
immuno-receptor tyrosine-based inhibitory motifs
(ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the
catalytic domain and keeps the enzyme in the inactive
conformation, and is thus believed to regulate the
phosphatase activity of SHP-1. Its C-SH2 domain is
thought to be involved in searching for phosphotyrosine
activators. The SHP2 N-SH2 domain is a conformational
switch; it either binds and inhibits the phosphatase, or
it binds phosphoproteins and activates the enzyme. The
C-SH2 domain contributes binding energy and specificity,
but it does not have a direct role in activation. Csw
SH2 domain function is essential, but either SH2 domain
can fulfill this requirement. The role of the csw SH2
domains during Sevenless receptor tyrosine kinase (SEV)
signaling is to bind Daughter of Sevenless rather than
activated SEV. Ptp-2 acts in oocytes downstream of
sheath/oocyte gap junctions to promote major sperm
protein (MSP)-induced MAP Kinase (MPK-1)
phosphorylation. Ptp-2 functions in the oocyte
cytoplasm, not at the cell surface to inhibit multiple
RasGAPs, resulting in sustained Ras activation. It is
thought that MSP triggers PTP-2/Ras activation and ROS
production to stimulate MPK-1 activity essential for
oocyte maturation and that secreted MSP domains and
Cu/Zn superoxide dismutases function antagonistically to
control ROS and MAPK signaling. In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 99
Score = 26.9 bits (60), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 309 LVIESYEQSGGYVLGFRI-DPQVRTKKINCRGD 340
LV ES + G +VL R D +V I C+G
Sbjct: 26 LVRESQSKPGDFVLSVRTDDDKVTHIMIRCQGG 58
>gnl|CDD|226346 COG3825, COG3825, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 393
Score = 28.2 bits (63), Expect = 6.8
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 253 FSPELGLCVEQPKPGF-TMARLWEVIPSSDMNESFNISLPYIQIASIRLR-------ESK 304
++PE G+ V P + ++W+ + +++ + I+IA RLR E +
Sbjct: 145 YNPE-GVRVGTPSKRNGSAVKVWDKREYRNFDDNVELGTRNIKIALRRLRKFAREGAEEE 203
Query: 305 FGLALVIESYEQSGGYVLGFRIDPQVRTKKIN 336
+ I + + G +D Q+R ++ N
Sbjct: 204 LDIDGTIHATAREAGL-----LDIQMRPERRN 230
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 28.1 bits (63), Expect = 8.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 255 PELGLCVEQPKPGFTMARLWE 275
ELG VE P F RLW
Sbjct: 297 RELGCDVEAALPAFPPERLWR 317
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,707,853
Number of extensions: 1708856
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 25
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)