RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11195
(346 letters)
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus
cereus [TaxId: 1396]}
Length = 138
Score = 30.0 bits (67), Expect = 0.17
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 275 EVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRID 327
+ S M ES N + I+ L+++ F + GG L +
Sbjct: 22 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGF-----VYVNRGPGGAGLLKDLH 69
Score = 25.4 bits (55), Expect = 7.2
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 121 ADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRID 168
M ES N + I+ L+++ F + GG L +
Sbjct: 27 DYMAESVNTNPVVIRKIMSYLKQAGF-----VYVNRGPGGAGLLKDLH 69
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184
{Helicobacter pylori [TaxId: 210]}
Length = 176
Score = 30.2 bits (68), Expect = 0.24
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 270 MARLWEVIPSSDMNESFNI-SLPY 292
+ + W+V PS++ + FNI +LPY
Sbjct: 140 LPKEWKVFPSNEWPKEFNILALPY 163
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976
{Bacillus halodurans [TaxId: 86665]}
Length = 90
Score = 27.4 bits (61), Expect = 0.79
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 174 QTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDD 223
Q V KE+Q Y ++S++ EE + + ++ D
Sbjct: 13 QIVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTD 62
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens)
[TaxId: 9606]}
Length = 109
Score = 27.4 bits (60), Expect = 1.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 294 QIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGD 340
Q A L+ + G+ LV +S G YVL + +V IN G
Sbjct: 10 QEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 56
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus
cereus [TaxId: 1396]}
Length = 82
Score = 25.8 bits (57), Expect = 2.1
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 174 QTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDD 223
Q V K++Q+Y + + ++ ++ L E + ++ +D
Sbjct: 17 QFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGED 66
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 27.3 bits (60), Expect = 2.5
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 85 LPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADM 123
S + + G LGV + N+ W++ M
Sbjct: 14 SGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSM 52
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36,
VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.4 bits (58), Expect = 2.7
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 84 MLPREHIYSQYQGVWNLSSDQGNL----GVFMATNIRVVWYADMNESFNISLPYIQIASI 139
+ E + Q +GV + + + G + + R++W N +++ QI I
Sbjct: 9 LEINETLVIQQRGV-RIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFI 67
Query: 140 RLRESKFG 147
+ + G
Sbjct: 68 EEQAAGIG 75
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 27.3 bits (60), Expect = 3.3
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 177 CKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLS 229
RI G+ + + ++AEEAP +++ + + + ++
Sbjct: 414 ATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIA 466
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 26.8 bits (59), Expect = 3.8
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 12/71 (16%)
Query: 143 ESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDV 202
E LA + ++ R + C Q Y + + D + D+
Sbjct: 211 EESKHLAYLSLEHDGQPAEKAVLRAE-------TCPSCQGYLKQFYLEFDRHADALADDL 263
Query: 203 A-----ILAEE 208
A + E
Sbjct: 264 ASLALDMRLAE 274
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific
cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
203496]}
Length = 356
Score = 26.4 bits (57), Expect = 5.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 92 SQYQGVWNLSSDQGNLG-VFMATNIRVVWYADMNESFN 128
Y G + +D G V++ TN R + YAD+ +
Sbjct: 300 HNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKKS 337
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase
RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 23.8 bits (52), Expect = 8.0
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 231 TLTLYSADHMGGGTASANRKLVFSP------ELGLCVEQPKPGFTMARLWEVIPSS 280
T+++ D G G A N K +F P + V + K + A++ + S
Sbjct: 4 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,272,090
Number of extensions: 57763
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 13
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)