BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11196
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U14|A Chain A, The Crystal Structure Of Hypothetical Upf0244 Protein Yjjx
           At Resolution 1.68 Angstrom
          Length = 172

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 23  IYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDL 62
           + SQY G+  +   +G +GVF A  +     YY   ++ L
Sbjct: 124 VXSQYTGIDEIGRKEGAIGVFTAGKLTRSSVYYQAVILAL 163


>pdb|3T0S|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Occk4 (Opdl)
          Length = 399

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 34  SSDQGNL-GVFMATNIRVVCTYYFGEVMD------LGFDIRTYYFGEVMDLGFDIRY 83
           +SD+ NL G   A   R+  +YY+G++ D      LG  + T   GE + L  D+RY
Sbjct: 174 ASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGL-LHTLPLGEGLSLRSDLRY 229


>pdb|2Y0H|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdl
          Length = 391

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 34  SSDQGNL-GVFMATNIRVVCTYYFGEVMD------LGFDIRTYYFGEVMDLGFDIRY 83
           +SD+ NL G   A   R+  +YY+G++ D      LG  + T   GE + L  D+RY
Sbjct: 174 ASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGL-LHTLPLGEGLSLRSDLRY 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,339,669
Number of Sequences: 62578
Number of extensions: 125222
Number of successful extensions: 353
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)