BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11196
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66IS6|BBS5_XENLA Bardet-Biedl syndrome 5 protein homolog OS=Xenopus laevis GN=bbs5
           PE=2 SV=1
          Length = 365

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           GA+++ K+LK+LPRE +Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 GALIQNKQLKLLPREQVYDKINGVWNLSSDQGNLGTFFITNVRIV 189


>sp|Q9CZQ9|BBS5_MOUSE Bardet-Biedl syndrome 5 protein homolog OS=Mus musculus GN=Bbs5
           PE=2 SV=1
          Length = 341

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 8   AIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           A+++ K+L++LP+EH+Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 AVIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTFFITNVRIV 188


>sp|Q8N3I7|BBS5_HUMAN Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=1 SV=1
          Length = 341

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 8   AIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           A+++ K+L++LP+EH+Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 ALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTFFITNVRIV 188


>sp|Q7ZWB7|BBS5_DANRE Bardet-Biedl syndrome 5 protein homolog OS=Danio rerio GN=bbs5 PE=2
           SV=1
          Length = 342

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           GA+++ K+L++LP+E +Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 GALIQNKQLRLLPQEQVYDKINGVWNLSSDQGNLGTFFITNVRIV 189


>sp|Q4R649|BBS5_MACFA Bardet-Biedl syndrome 5 protein homolog OS=Macaca fascicularis
           GN=BBS5 PE=2 SV=2
          Length = 341

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 8   AIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           A+++ K+L++LP+EH+Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 ALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTFFITNVRIV 188


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.142    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,410,030
Number of Sequences: 539616
Number of extensions: 1488575
Number of successful extensions: 3389
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3379
Number of HSP's gapped (non-prelim): 11
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)