Query psy11196
Match_columns 103
No_of_seqs 94 out of 96
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:35:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07289 DUF1448: Protein of u 100.0 2.4E-45 5.2E-50 300.1 9.9 96 4-103 138-256 (339)
2 smart00683 DM16 Repeats in sea 99.8 1.3E-20 2.7E-25 120.9 5.5 43 21-67 1-43 (55)
3 PF07289 DUF1448: Protein of u 99.6 7E-15 1.5E-19 121.2 7.9 87 12-102 14-129 (339)
4 PF14470 bPH_3: Bacterial PH d 94.2 0.091 2E-06 33.7 4.0 38 17-58 1-38 (96)
5 PF08000 bPH_1: Bacterial PH d 92.7 0.1 2.2E-06 37.8 2.6 28 15-51 25-52 (124)
6 PF11605 Vps36_ESCRT-II: Vacuo 92.6 0.15 3.3E-06 34.9 3.2 47 12-62 5-55 (89)
7 PF03517 Voldacs: Regulator of 91.7 0.37 8.1E-06 34.5 4.4 22 41-65 1-23 (135)
8 KOG3294|consensus 90.1 0.52 1.1E-05 38.6 4.4 45 11-58 9-63 (261)
9 smart00568 GRAM domain in gluc 88.2 1.1 2.4E-05 27.1 3.9 37 17-58 2-38 (61)
10 PF02893 GRAM: GRAM domain; I 77.8 2.1 4.5E-05 26.5 2.1 40 15-58 7-46 (69)
11 KOG3420|consensus 55.5 7.7 0.00017 30.4 1.6 19 67-85 65-83 (185)
12 PRK00907 hypothetical protein; 49.3 31 0.00068 23.8 3.7 38 62-99 48-87 (92)
13 COG3934 Endo-beta-mannanase [C 47.3 18 0.0004 32.7 2.9 64 5-73 35-120 (587)
14 PRK00341 hypothetical protein; 44.8 43 0.00093 22.8 3.8 38 62-99 47-86 (91)
15 PRK02047 hypothetical protein; 42.0 48 0.001 22.5 3.7 37 63-99 48-86 (91)
16 PF14363 AAA_assoc: Domain ass 40.3 22 0.00048 24.0 1.8 17 14-30 72-88 (98)
17 KOG4471|consensus 38.6 26 0.00056 32.4 2.5 75 15-95 34-133 (717)
18 PRK04998 hypothetical protein; 32.6 78 0.0017 21.1 3.5 34 64-97 46-81 (88)
19 PF04359 DUF493: Protein of un 30.4 92 0.002 20.3 3.5 36 62-97 41-78 (85)
20 PF11548 Receptor_IA-2: Protei 30.3 56 0.0012 22.9 2.6 11 76-86 46-56 (91)
21 PF11256 DUF3055: Protein of u 28.4 45 0.00097 23.1 1.8 28 46-77 8-39 (81)
22 KOG3238|consensus 26.6 43 0.00093 27.0 1.7 23 40-65 35-57 (216)
23 PF00585 Thr_dehydrat_C: C-ter 26.1 59 0.0013 21.7 2.1 28 69-97 47-74 (91)
24 PF13421 Band_7_1: SPFH domain 25.8 2.3E+02 0.005 21.8 5.5 66 17-90 37-121 (211)
25 PF03416 Peptidase_C54: Peptid 25.1 1.1E+02 0.0024 24.4 3.8 29 67-95 250-278 (278)
26 PF08644 SPT16: FACT complex s 24.2 1.1E+02 0.0023 23.1 3.3 27 76-102 69-95 (152)
27 PF10147 CR6_interact: Growth 23.2 46 0.001 26.5 1.3 20 76-95 168-188 (217)
28 PF09322 DUF1979: Domain of un 22.4 31 0.00068 22.6 0.2 8 76-83 51-58 (58)
29 COG0812 MurB UDP-N-acetylmuram 21.4 90 0.0019 25.8 2.6 72 26-99 104-197 (291)
30 PF08846 DUF1816: Domain of un 21.1 38 0.00083 22.5 0.4 8 51-58 20-27 (68)
31 cd02803 OYE_like_FMN_family Ol 20.5 1.2E+02 0.0025 23.7 3.0 38 60-97 172-240 (327)
32 PF00128 Alpha-amylase: Alpha 20.3 1.3E+02 0.0027 21.9 3.0 22 76-97 162-188 (316)
No 1
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=100.00 E-value=2.4e-45 Score=300.13 Aligned_cols=96 Identities=46% Similarity=0.841 Sum_probs=93.6
Q ss_pred cchhceeecCcccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCccee------------eeeecc
Q psy11196 4 YKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD------------IRTYYF 71 (103)
Q Consensus 4 ~lR~aii~~~~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN------------ir~SKF 71 (103)
.||||||++|+|+|||+|+||++++||||||+|||++|+|++||||+| |||+ +|+.|| ||+|||
T Consensus 138 klR~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiV---W~A~-~ne~fNVSiPylqi~~i~ir~SKf 213 (339)
T PF07289_consen 138 KLRGAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIV---WFAD-MNESFNVSIPYLQIKSIRIRDSKF 213 (339)
T ss_pred hhheeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEE---EEcc-CCccccccchHhhheeeeeecccc
Confidence 479999999999999999999999999999999999999999999999 9999 999999 799999
Q ss_pred cceE-----------EEEEecChhhHHHHHHHHHHHhhhhhhC
Q psy11196 72 GEVM-----------DLGFDIRYESFENEVYHELFDSHHVFRR 103 (103)
Q Consensus 72 G~al-----------vLGFridP~e~l~~~~ke~~~L~~~~~~ 103 (103)
|+|| +|||||||+|||+++||||++||++|+.
T Consensus 214 G~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~sLh~vy~~ 256 (339)
T PF07289_consen 214 GPALVIETSESSGGYVLGFRVDPEERLQELFKEIQSLHKVYSA 256 (339)
T ss_pred ceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999973
No 2
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=99.82 E-value=1.3e-20 Score=120.89 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=41.8
Q ss_pred ceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCcceeee
Q psy11196 21 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIR 67 (103)
Q Consensus 21 E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNir 67 (103)
|+++++++||||+|||||++|+|+|||||+| |||+ ++++||++
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRii---W~s~-~~~~~NlS 43 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLV---WHSD-TNPRFNIS 43 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEE---EEeC-CCCceEEE
Confidence 8999999999999999999999999999999 9999 99999964
No 3
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=99.57 E-value=7e-15 Score=121.18 Aligned_cols=87 Identities=17% Similarity=0.349 Sum_probs=70.4
Q ss_pred cCcccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCcceee------------e--ee-ccc--ce
Q psy11196 12 RKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDI------------R--TY-YFG--EV 74 (103)
Q Consensus 12 ~~~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNi------------r--~S-KFG--~a 74 (103)
.+.|+|+|||.+++++++|+|+|||+|+.|+++|||+|++ |||. .++++|+ | .| ..| +|
T Consensus 14 ~~~l~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~i---W~s~-~~~r~NlSIG~~~i~~i~~~~~~sklrg~tea 89 (339)
T PF07289_consen 14 ASQLKLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLI---WHSL-KRPRINLSIGYNCITNISTKTVNSKLRGNTEA 89 (339)
T ss_pred hhhcccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeE---Eecc-CCCceeEEeeceeEEEEEEEEeeccccCceeE
Confidence 4578999999999999999999999999999999999999 9999 9999992 1 22 234 23
Q ss_pred E-----------EEEEe-cChhhHHHHHHHHHHHhhhhhh
Q psy11196 75 M-----------DLGFD-IRYESFENEVYHELFDSHHVFR 102 (103)
Q Consensus 75 l-----------vLGFr-idP~e~l~~~~ke~~~L~~~~~ 102 (103)
| .+=|. +.|...-+.+|..+++.|++|.
T Consensus 90 L~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 90 LYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred EEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 3 55565 4444433689999999999985
No 4
>PF14470 bPH_3: Bacterial PH domain
Probab=94.21 E-value=0.091 Score=33.67 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.9
Q ss_pred ccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 17 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 17 llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
|.|+|+|.....|..+.. .....|.+++||=|++ -++.
T Consensus 1 L~~~E~I~~~~~~~~~~~-~~~~~g~l~~TnkRli---f~~~ 38 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF-FTSFPGVLVLTNKRLI---FYSK 38 (96)
T ss_pred CcCCCEEEEEEEEEEeec-ccCceeEEEEeCCEEE---EEEc
Confidence 579999999999998876 6667999999999999 6655
No 5
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=92.72 E-value=0.1 Score=37.82 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.9
Q ss_pred ccccCCceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 15 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 15 L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
--|+|||+|+..++.+ ...+++||-|+|
T Consensus 25 ~~L~~gE~I~~ayk~i---------RD~~vFTnkRlI 52 (124)
T PF08000_consen 25 PLLLDGEEIEAAYKLI---------RDEIVFTNKRLI 52 (124)
T ss_dssp GGSSTT--EEEEEEES---------SEEEEEESSEEE
T ss_pred HhcCCCCeeeeeehhh---------ceeEEEecChhe
Confidence 3578999999999998 567999999999
No 6
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=92.60 E-value=0.15 Score=34.86 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred cCcccccCCceeeeeecceeeccCC----CCceeeEEEEeeeEEeecccccccCc
Q psy11196 12 RKELKMLPREHIYSQYQGVWNLSSD----QGNLGVFMATNIRVVCTYYFGEVMDL 62 (103)
Q Consensus 12 ~~~L~llp~E~i~~~~~gV~nls~d----qG~lG~f~vTNiRiV~~~W~a~~~~~ 62 (103)
-++-.|.|+|.++-+-+||-=-.|+ +=.-|++++|+-|++ |... .++
T Consensus 5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRli---w~d~-~~~ 55 (89)
T PF11605_consen 5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLI---WVDD-SDP 55 (89)
T ss_dssp CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEE---EEES-SGH
T ss_pred ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEE---EEcC-CCC
Confidence 4567789999999999998543344 444899999999999 9866 444
No 7
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=91.66 E-value=0.37 Score=34.50 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.9
Q ss_pred eeEEEEeeeEEeecccc-cccCccee
Q psy11196 41 GVFMATNIRVVCTYYFG-EVMDLGFD 65 (103)
Q Consensus 41 G~f~vTNiRiV~~~W~a-~~~~~~fN 65 (103)
|+|+|||=||+ |++ .-.+.+|.
T Consensus 1 g~L~Vt~~~l~---w~~~~~~~~G~~ 23 (135)
T PF03517_consen 1 GTLYVTESRLI---WFSNEDSSKGFS 23 (135)
T ss_dssp EEEEEETTEEE---EEET--TTEEEE
T ss_pred CEEEEecCEEE---EECCCcCCccee
Confidence 89999999999 999 33677777
No 8
>KOG3294|consensus
Probab=90.10 E-value=0.52 Score=38.60 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=32.9
Q ss_pred ecCc-ccccCCceeeeeecceeec---------cCCCCceeeEEEEeeeEEeeccccc
Q psy11196 11 RRKE-LKMLPREHIYSQYQGVWNL---------SSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 11 ~~~~-L~llp~E~i~~~~~gV~nl---------s~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
.++. ..+..+|-|+...+||+=+ .+..-..|++.+||.||| .-+.
T Consensus 9 ~~G~gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiI---Fis~ 63 (261)
T KOG3294|consen 9 PNGRGVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRII---FISS 63 (261)
T ss_pred CCCceeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEE---EecC
Confidence 3454 6778888888888888622 222234899999999999 7776
No 9
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=88.16 E-value=1.1 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.9
Q ss_pred ccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 17 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 17 llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
|.++|.+++.+.--+. ++.-.-|++++||=|+. .+|.
T Consensus 2 l~~~E~l~~~~~C~l~--~~~~~~G~lyiT~~~l~---F~S~ 38 (61)
T smart00568 2 LPEEEKLIADYSCYLS--RDGPVQGRLYISNYRLC---FRSD 38 (61)
T ss_pred cCCCcEEEEEEEeEEC--CCccccEEEEEECCEEE---EEcc
Confidence 6789999999875555 55667999999999999 8886
No 10
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=77.83 E-value=2.1 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=23.4
Q ss_pred ccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 15 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 15 L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
..|.++|.+++.++ ++-..+.....|++++||=|+. .+|.
T Consensus 7 F~lp~~E~li~~~~-c~l~~~~~~~~G~LyiT~~~lc---F~s~ 46 (69)
T PF02893_consen 7 FKLPEEERLIEEYS-CALFKSKIPVQGRLYITNNYLC---FYSN 46 (69)
T ss_dssp ----TT--EEEEEE-ETTTEE---EEEEEEEESSEEE---EEES
T ss_pred ccCCCCCeEEEEEE-EEEECCccceeeEEEECCCEEE---EEEC
Confidence 45778888888876 2222225667999999999999 8774
No 11
>KOG3420|consensus
Probab=55.47 E-value=7.7 Score=30.41 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=15.0
Q ss_pred eeecccceEEEEEecChhh
Q psy11196 67 RTYYFGEVMDLGFDIRYES 85 (103)
Q Consensus 67 r~SKFG~alvLGFridP~e 85 (103)
..|.||...+|||.|||+.
T Consensus 65 a~sm~~~e~vlGfDIdpeA 83 (185)
T KOG3420|consen 65 AFSMPKNESVLGFDIDPEA 83 (185)
T ss_pred HhhcCCCceEEeeecCHHH
Confidence 3466777889999999864
No 12
>PRK00907 hypothetical protein; Provisional
Probab=49.35 E-value=31 Score=23.81 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=30.4
Q ss_pred cceeeeeecccceE--EEEEecChhhHHHHHHHHHHHhhh
Q psy11196 62 LGFDIRTYYFGEVM--DLGFDIRYESFENEVYHELFDSHH 99 (103)
Q Consensus 62 ~~fNir~SKFG~al--vLGFridP~e~l~~~~ke~~~L~~ 99 (103)
....+|.|+=|... .+.+++.-.|+|+.+|+++.+...
T Consensus 48 ~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~ 87 (92)
T PRK00907 48 ERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPE 87 (92)
T ss_pred CcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCC
Confidence 33447999999887 777888889999999999987543
No 13
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=47.29 E-value=18 Score=32.68 Aligned_cols=64 Identities=25% Similarity=0.197 Sum_probs=46.9
Q ss_pred chhceeecCcccccCCceeeeeecceeeccC------------CCCceeeEEE----------EeeeEEeecccccccCc
Q psy11196 5 KSGAIVRRKELKMLPREHIYSQYQGVWNLSS------------DQGNLGVFMA----------TNIRVVCTYYFGEVMDL 62 (103)
Q Consensus 5 lR~aii~~~~L~llp~E~i~~~~~gV~nls~------------dqG~lG~f~v----------TNiRiV~~~W~a~~~~~ 62 (103)
.+..=+.+.++-+|.||.-.|+ +|.-|..+ ..+++++|++ ||.||- |+.+ .++
T Consensus 35 a~~vg~k~lR~fiLDgEdc~d~-~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip---wag~-~~p 109 (587)
T COG3934 35 AGFVGVKDLRLFILDGEDCRDK-EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP---WAGE-QSP 109 (587)
T ss_pred ccCccceeEEEEEecCcchhhh-hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee---cCCC-CCc
Confidence 3444456667778999995555 78888777 3466777664 799999 9999 888
Q ss_pred ceeeeeecccc
Q psy11196 63 GFDIRTYYFGE 73 (103)
Q Consensus 63 ~fNir~SKFG~ 73 (103)
.=+|+++||=.
T Consensus 110 dn~iyD~k~~~ 120 (587)
T COG3934 110 DNVIYDPKFRG 120 (587)
T ss_pred cccccchhhcc
Confidence 87888877643
No 14
>PRK00341 hypothetical protein; Provisional
Probab=44.84 E-value=43 Score=22.83 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=30.4
Q ss_pred cceeeeeecccceE--EEEEecChhhHHHHHHHHHHHhhh
Q psy11196 62 LGFDIRTYYFGEVM--DLGFDIRYESFENEVYHELFDSHH 99 (103)
Q Consensus 62 ~~fNir~SKFG~al--vLGFridP~e~l~~~~ke~~~L~~ 99 (103)
..+..|+|+=|+.. .+-+.+.-.++++.+|+++.....
T Consensus 47 ~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~ 86 (91)
T PRK00341 47 STLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGR 86 (91)
T ss_pred cceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCC
Confidence 34446899999887 777888889999999999987543
No 15
>PRK02047 hypothetical protein; Provisional
Probab=41.99 E-value=48 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=30.0
Q ss_pred ceeeeeecccceE--EEEEecChhhHHHHHHHHHHHhhh
Q psy11196 63 GFDIRTYYFGEVM--DLGFDIRYESFENEVYHELFDSHH 99 (103)
Q Consensus 63 ~fNir~SKFG~al--vLGFridP~e~l~~~~ke~~~L~~ 99 (103)
.+..|.|+=|+.. .+-.++.-.|+++.+|+++.....
T Consensus 48 ~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~ 86 (91)
T PRK02047 48 KIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPM 86 (91)
T ss_pred ceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCC
Confidence 3447899999887 677788889999999999987644
No 16
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=40.28 E-value=22 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.5
Q ss_pred cccccCCceeeeeecce
Q psy11196 14 ELKMLPREHIYSQYQGV 30 (103)
Q Consensus 14 ~L~llp~E~i~~~~~gV 30 (103)
.|.|-+||.|.|.++||
T Consensus 72 ~l~l~~~e~V~D~F~Gv 88 (98)
T PF14363_consen 72 VLSLDDGEEVVDVFEGV 88 (98)
T ss_pred EEecCCCCEEEEEECCE
Confidence 47889999999999998
No 17
>KOG4471|consensus
Probab=38.65 E-value=26 Score=32.44 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=47.7
Q ss_pred ccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCccee------------eee------ecccceE-
Q psy11196 15 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD------------IRT------YYFGEVM- 75 (103)
Q Consensus 15 L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN------------ir~------SKFG~al- 75 (103)
.-+||||.|++...++.=+. ..-|++.+||-|+- --+.-+.+.|= .++ --||.-.
T Consensus 34 ~~~L~GE~i~~~~y~c~f~G---~~~g~l~lsNyRl~---fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~ 107 (717)
T KOG4471|consen 34 FPLLPGESIIDEKYICPFLG---AVDGTLALSNYRLY---FKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEIT 107 (717)
T ss_pred ccccCCcccccceecccccc---cccceEEeeeeEEE---EEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEE
Confidence 45799999999887765553 56899999999997 55553333222 222 1243333
Q ss_pred -----EEEEecChhhHHH-HHHHHHH
Q psy11196 76 -----DLGFDIRYESFEN-EVYHELF 95 (103)
Q Consensus 76 -----vLGFridP~e~l~-~~~ke~~ 95 (103)
+|-|.-.|+++-+ ++++-+.
T Consensus 108 CKDmr~lR~~fk~~~q~r~~~~e~L~ 133 (717)
T KOG4471|consen 108 CKDMRNLRCAFKQEEQCRRDWFERLN 133 (717)
T ss_pred eccccceeeecCcccccHHHHHHHHH
Confidence 6666666777766 5555443
No 18
>PRK04998 hypothetical protein; Provisional
Probab=32.58 E-value=78 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=28.0
Q ss_pred eeeeeecccceE--EEEEecChhhHHHHHHHHHHHh
Q psy11196 64 FDIRTYYFGEVM--DLGFDIRYESFENEVYHELFDS 97 (103)
Q Consensus 64 fNir~SKFG~al--vLGFridP~e~l~~~~ke~~~L 97 (103)
+..|+|+=|+.. .+...+.-.|+++++|+++...
T Consensus 46 ~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~ 81 (88)
T PRK04998 46 PTVKPSSKGNYHSVSITITATSIEQVETLYEELAKI 81 (88)
T ss_pred ceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 447888888877 7778888899999999998764
No 19
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=30.36 E-value=92 Score=20.26 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.3
Q ss_pred cceeeeeecccceE--EEEEecChhhHHHHHHHHHHHh
Q psy11196 62 LGFDIRTYYFGEVM--DLGFDIRYESFENEVYHELFDS 97 (103)
Q Consensus 62 ~~fNir~SKFG~al--vLGFridP~e~l~~~~ke~~~L 97 (103)
..+..|.|+=|+.. .+-..+.-+|+++++|+++...
T Consensus 41 ~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 41 EKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAH 78 (85)
T ss_dssp EEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred CceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccC
Confidence 34457899999887 6778888899999999998764
No 20
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=30.31 E-value=56 Score=22.94 Aligned_cols=11 Identities=18% Similarity=0.313 Sum_probs=5.8
Q ss_pred EEEEecChhhH
Q psy11196 76 DLGFDIRYESF 86 (103)
Q Consensus 76 vLGFridP~e~ 86 (103)
.+-|||+|..+
T Consensus 46 avTFrv~~N~~ 56 (91)
T PF11548_consen 46 AVTFRVRPNNK 56 (91)
T ss_dssp EEEEEE---TT
T ss_pred eEEEEeccCcC
Confidence 37899998764
No 21
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=28.38 E-value=45 Score=23.07 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=19.6
Q ss_pred EeeeEEeecccccccCccee---eeee-cccceEEE
Q psy11196 46 TNIRVVCTYYFGEVMDLGFD---IRTY-YFGEVMDL 77 (103)
Q Consensus 46 TNiRiV~~~W~a~~~~~~fN---ir~S-KFG~alvL 77 (103)
|++|.| =|-- -+.||+ +.+. -||+.||+
T Consensus 8 t~~RFv---~f~~-e~~RyDlai~~T~rF~GK~LV~ 39 (81)
T PF11256_consen 8 TKTRFV---GFVG-ESHRYDLAIVYTNRFYGKPLVL 39 (81)
T ss_pred eeEEEE---EEec-CCceEEEEEEEeccccCceEEE
Confidence 789999 4444 478999 3333 58999944
No 22
>KOG3238|consensus
Probab=26.59 E-value=43 Score=27.00 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=19.2
Q ss_pred eeeEEEEeeeEEeecccccccCccee
Q psy11196 40 LGVFMATNIRVVCTYYFGEVMDLGFD 65 (103)
Q Consensus 40 lG~f~vTNiRiV~~~W~a~~~~~~fN 65 (103)
-||++||-=+++ |.+.-+..+|.
T Consensus 35 ~GTlYIa~s~Ls---Wl~~~~akGfS 57 (216)
T KOG3238|consen 35 TGTLYIAESTLS---WLSTSGAKGFS 57 (216)
T ss_pred cceEEEecceEE---eeeccccccee
Confidence 799999999999 99984446665
No 23
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=26.09 E-value=59 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=21.1
Q ss_pred ecccceEEEEEecChhhHHHHHHHHHHHh
Q psy11196 69 YYFGEVMDLGFDIRYESFENEVYHELFDS 97 (103)
Q Consensus 69 SKFG~alvLGFridP~e~l~~~~ke~~~L 97 (103)
+.+|.+ .+||.+++.+.++++.+.+.++
T Consensus 47 ~~~a~v-lvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 47 DDFARV-LVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp TSCSEE-EEEEE-SSTHHHHHHHHHHTSS
T ss_pred CCeeeE-EEEEEeCCHHHHHHHHHHHHHc
Confidence 356666 8999999999888888877654
No 24
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=25.77 E-value=2.3e+02 Score=21.76 Aligned_cols=66 Identities=12% Similarity=0.216 Sum_probs=38.6
Q ss_pred ccCCceeeeeec--ce-----eeccCCCCceeeEEEEeeeEEeecccccccCccee------eeeecccceE-----EEE
Q psy11196 17 MLPREHIYSQYQ--GV-----WNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD------IRTYYFGEVM-----DLG 78 (103)
Q Consensus 17 llp~E~i~~~~~--gV-----~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN------ir~SKFG~al-----vLG 78 (103)
.-||++.++.-+ -. |-..+++...-..+.-|.|-+ .+-+|- +|+..||..- .++
T Consensus 37 ~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~--------~~~kwGT~~pi~~~D~~~~~v~lra~G~ys 108 (211)
T PF13421_consen 37 FGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEI--------TNIKWGTPNPIPYRDPEYGPVRLRAFGTYS 108 (211)
T ss_pred ecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEe--------cCCccCCCCCeeecCCCCCcEEEEEEEEEE
Confidence 457777666421 01 223344455556666677766 443333 7899999222 889
Q ss_pred Ee-cChhhHHHHH
Q psy11196 79 FD-IRYESFENEV 90 (103)
Q Consensus 79 Fr-idP~e~l~~~ 90 (103)
|| .||+..+.++
T Consensus 109 ~rI~Dp~~F~~~~ 121 (211)
T PF13421_consen 109 FRIVDPVLFIRNL 121 (211)
T ss_pred EEEeCHHHHHHhh
Confidence 99 5777666554
No 25
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=25.15 E-value=1.1e+02 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.4
Q ss_pred eeecccceEEEEEecChhhHHHHHHHHHH
Q psy11196 67 RTYYFGEVMDLGFDIRYESFENEVYHELF 95 (103)
Q Consensus 67 r~SKFG~alvLGFridP~e~l~~~~ke~~ 95 (103)
.-++.-+++.|||-++=++.++++.++++
T Consensus 250 ~~~~lDPS~~lgF~~~~~~d~~~~~~~i~ 278 (278)
T PF03416_consen 250 PISKLDPSMALGFYCRNEEDFEDFCKRIQ 278 (278)
T ss_dssp EGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred cHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 34456677899999999999999999875
No 26
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=24.20 E-value=1.1e+02 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=24.9
Q ss_pred EEEEecChhhHHHHHHHHHHHhhhhhh
Q psy11196 76 DLGFDIRYESFENEVYHELFDSHHVFR 102 (103)
Q Consensus 76 vLGFridP~e~l~~~~ke~~~L~~~~~ 102 (103)
.|.||-.-..++++++++|..|.+-+.
T Consensus 69 eltfRs~d~~~~~~v~~~Ikel~k~~~ 95 (152)
T PF08644_consen 69 ELTFRSKDSRHLQEVFRQIKELQKRVK 95 (152)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHHH
Confidence 899999988899999999999998765
No 27
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=23.20 E-value=46 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.2
Q ss_pred EEEEecChhh-HHHHHHHHHH
Q psy11196 76 DLGFDIRYES-FENEVYHELF 95 (103)
Q Consensus 76 vLGFridP~e-~l~~~~ke~~ 95 (103)
-+||.|||.| +..+++.+..
T Consensus 168 ~fGy~vDprdprF~eml~~kE 188 (217)
T PF10147_consen 168 HFGYKVDPRDPRFQEMLQEKE 188 (217)
T ss_pred HhCCcCCCCChHHHHHHHHHH
Confidence 5899999975 6777776654
No 28
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=22.35 E-value=31 Score=22.61 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=6.5
Q ss_pred EEEEecCh
Q psy11196 76 DLGFDIRY 83 (103)
Q Consensus 76 vLGFridP 83 (103)
.=||||||
T Consensus 51 mRG~rvDp 58 (58)
T PF09322_consen 51 MRGFRVDP 58 (58)
T ss_pred HhccccCC
Confidence 66899987
No 29
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.41 E-value=90 Score=25.82 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=52.9
Q ss_pred eecceeeccCCCCceeeEEEE--------------eeeEEe----ecccccccCcceeeeeecccce----EEEEEecCh
Q psy11196 26 QYQGVWNLSSDQGNLGVFMAT--------------NIRVVC----TYYFGEVMDLGFDIRTYYFGEV----MDLGFDIRY 83 (103)
Q Consensus 26 ~~~gV~nls~dqG~lG~f~vT--------------NiRiV~----~~W~a~~~~~~fNir~SKFG~a----lvLGFridP 83 (103)
-+.|.+++++=+|..|-..+- .+++++ ..|.+. ....|--|+|-|=.. +..+|+..|
T Consensus 104 gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~-~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 104 GLSGLEFLAGIPGSVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA-EELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred CCcchhhhcCCCcccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEH-HHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 466999999999988876554 455553 236666 667777888877644 388999999
Q ss_pred hhHHHHHHHHHHHhhh
Q psy11196 84 ESFENEVYHELFDSHH 99 (103)
Q Consensus 84 ~e~l~~~~ke~~~L~~ 99 (103)
. .-+.+.++++++.+
T Consensus 183 ~-~~~~I~~~~~~ir~ 197 (291)
T COG0812 183 G-DPEDILAAMCAIRR 197 (291)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 8 67788888887764
No 30
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=21.06 E-value=38 Score=22.55 Aligned_cols=8 Identities=75% Similarity=1.684 Sum_probs=6.7
Q ss_pred Eeeccccc
Q psy11196 51 VCTYYFGE 58 (103)
Q Consensus 51 V~~~W~a~ 58 (103)
-|||||..
T Consensus 20 ~ctYyFGP 27 (68)
T PF08846_consen 20 NCTYYFGP 27 (68)
T ss_pred CEEEEeCC
Confidence 38999987
No 31
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.47 E-value=1.2e+02 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=25.3
Q ss_pred cCcceeeeeecccceE----------------------EEEEecChhh---------HHHHHHHHHHHh
Q psy11196 60 MDLGFDIRTYYFGEVM----------------------DLGFDIRYES---------FENEVYHELFDS 97 (103)
Q Consensus 60 ~~~~fNir~SKFG~al----------------------vLGFridP~e---------~l~~~~ke~~~L 97 (103)
.++.+|-|+-+||.++ .+|.|+.|.+ ...++.++++++
T Consensus 172 lsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~ 240 (327)
T cd02803 172 LSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEA 240 (327)
T ss_pred cCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHc
Confidence 3566677777777665 7899998753 445566666654
No 32
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.32 E-value=1.3e+02 Score=21.91 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.8
Q ss_pred EEEEecC-----hhhHHHHHHHHHHHh
Q psy11196 76 DLGFDIR-----YESFENEVYHELFDS 97 (103)
Q Consensus 76 vLGFrid-----P~e~l~~~~ke~~~L 97 (103)
+=|||+| |.+.++++.+++.+.
T Consensus 162 iDGfR~D~~~~~~~~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 162 IDGFRLDAAKHIPKEFWKEFRDEVKEE 188 (316)
T ss_dssp ESEEEETTGGGSSHHHHHHHHHHHHHH
T ss_pred EeEEEEccccccchhhHHHHhhhhhhh
Confidence 6799999 667777777777654
Done!