Query psy11196
Match_columns 103
No_of_seqs 94 out of 96
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:35:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 95.7 0.0068 2.3E-07 51.5 3.7 45 11-58 3-48 (528)
2 1lw3_A Myotubularin-related pr 95.4 0.066 2.3E-06 46.8 8.8 43 13-58 77-120 (657)
3 2cay_A VPS36 PH domain, vacuol 93.5 0.051 1.8E-06 38.9 3.1 50 10-63 18-71 (145)
4 3hsa_A Pleckstrin homology dom 92.3 0.085 2.9E-06 37.6 2.8 29 14-51 25-53 (126)
5 2hth_B Vacuolar protein sortin 88.8 0.48 1.6E-05 33.5 4.0 43 13-58 9-54 (140)
6 1zyi_A Methylosome subunit pic 85.3 0.64 2.2E-05 34.3 3.2 42 19-65 19-64 (171)
7 3b77_A Uncharacterized protein 82.9 0.73 2.5E-05 35.1 2.6 28 15-51 20-49 (193)
8 2yf0_A Myotubularin-related pr 69.3 13 0.00043 31.5 6.8 58 36-97 22-98 (512)
9 3twe_A Alpha4H; unknown functi 46.2 11 0.00039 20.4 1.7 15 87-101 3-17 (27)
10 1w7p_D VPS36P, YLR417W; ESCRT- 37.5 7 0.00024 33.6 0.0 47 13-63 13-63 (566)
11 1rwu_A Hypothetical UPF0250 pr 26.4 80 0.0027 21.3 3.9 33 65-97 68-102 (109)
12 2h9z_A Hypothetical protein HP 22.6 92 0.0031 19.8 3.5 32 66-97 46-79 (86)
13 4hti_A Receptor-type tyrosine- 21.5 61 0.0021 22.0 2.5 43 15-86 21-63 (99)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=95.73 E-value=0.0068 Score=51.49 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=36.0
Q ss_pred ecCcccccCCceeeeeecceeeccCC-CCceeeEEEEeeeEEeeccccc
Q psy11196 11 RRKELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 11 ~~~~L~llp~E~i~~~~~gV~nls~d-qG~lG~f~vTNiRiV~~~W~a~ 58 (103)
+...+.+||||.|....++|.-+... ....|++.+||-|++ +.+.
T Consensus 3 ~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLi---F~~~ 48 (528)
T 1zsq_A 3 SMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSM 48 (528)
T ss_dssp -CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEES
T ss_pred CCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEE---EEcc
Confidence 34578899999999999999866433 245899999999999 7765
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=95.41 E-value=0.066 Score=46.82 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.8
Q ss_pred CcccccCCceeeeeecceeeccCCCC-ceeeEEEEeeeEEeeccccc
Q psy11196 13 KELKMLPREHIYSQYQGVWNLSSDQG-NLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 13 ~~L~llp~E~i~~~~~gV~nls~dqG-~lG~f~vTNiRiV~~~W~a~ 58 (103)
..+.+||||.++...++|--+....| ..|++++||-|++ +-+.
T Consensus 77 ~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLi---F~~~ 120 (657)
T 1lw3_A 77 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSM 120 (657)
T ss_dssp CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEES
T ss_pred CCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEE---EEec
Confidence 36889999999999999975543333 5799999999999 7764
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=93.54 E-value=0.051 Score=38.91 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=38.6
Q ss_pred eecCcccccCCceeeeeecceeeccC----CCCceeeEEEEeeeEEeecccccccCcc
Q psy11196 10 VRRKELKMLPREHIYSQYQGVWNLSS----DQGNLGVFMATNIRVVCTYYFGEVMDLG 63 (103)
Q Consensus 10 i~~~~L~llp~E~i~~~~~gV~nls~----dqG~lG~f~vTNiRiV~~~W~a~~~~~~ 63 (103)
-..++..|+|+|.++-..++|-=--| .+-.-|++++||-||| |-.. .++.
T Consensus 18 t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRII---yv~~-~~~~ 71 (145)
T 2cay_A 18 TSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRII---YIDD-AKPT 71 (145)
T ss_dssp CTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEE---EEES-SCHH
T ss_pred ccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEE---EecC-CCCc
Confidence 34677889999999999998853333 3445899999999999 9766 5554
No 4
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=92.29 E-value=0.085 Score=37.63 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred cccccCCceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 14 ELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 14 ~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
+--|+|||+|+..+..+ ...+++||-|+|
T Consensus 25 ~~~L~~gE~I~~ayk~i---------RD~~iFTnkRLI 53 (126)
T 3hsa_A 25 SPILGDNEELQLAYXMV---------RDLFVFTSXRLI 53 (126)
T ss_dssp GGGSCTTCCEEEEEECS---------SEEEEEESSEEE
T ss_pred HHhcCCCCEEEEEehhc---------CceEEEccchhe
Confidence 34689999999999988 567999999999
No 5
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=88.79 E-value=0.48 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.7
Q ss_pred CcccccCCceeeeeecceeeccCC---CCceeeEEEEeeeEEeeccccc
Q psy11196 13 KELKMLPREHIYSQYQGVWNLSSD---QGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 13 ~~L~llp~E~i~~~~~gV~nls~d---qG~lG~f~vTNiRiV~~~W~a~ 58 (103)
++-.|.|+|.++-..++|-=--|| +=.-|++++|+-||| |...
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli---~~d~ 54 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLI---WRDQ 54 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEE---EEET
T ss_pred CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEE---EecC
Confidence 556689999999999988533333 224899999999999 9765
No 6
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=85.28 E-value=0.64 Score=34.33 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred CC--ceeeeeecceeeccC--CCCceeeEEEEeeeEEeecccccccCccee
Q psy11196 19 PR--EHIYSQYQGVWNLSS--DQGNLGVFMATNIRVVCTYYFGEVMDLGFD 65 (103)
Q Consensus 19 p~--E~i~~~~~gV~nls~--dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN 65 (103)
|. |.|.-+-++|.=.=+ +.| .|+|+||+=|++ |++. ...+|.
T Consensus 19 p~~~E~v~~~~~~v~~vl~~~~~g-~GtLyVt~~~l~---W~~~-~~~G~s 64 (171)
T 1zyi_A 19 PGSAEGLRQQQPETEAVLNGKGLG-TGTLYIAESRLS---WLDG-SGLGFS 64 (171)
T ss_dssp --------CBCSSEEEEBTTBCCC-EEEEEEETTEEE---EEET-TTEEEE
T ss_pred CCCccceEEEcCCEEEEECCCccC-ceEEEEEcCEEE---EEcC-CCcEEE
Confidence 56 666655554432221 223 799999999999 9999 888888
No 7
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=82.86 E-value=0.73 Score=35.12 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.5
Q ss_pred ccccC--CceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 15 LKMLP--REHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 15 L~llp--~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
=-|+| ||+|+..+..+-| .+++||-|+|
T Consensus 20 ~~Ll~EdgE~I~~ayk~irD---------~~iFTNkRLI 49 (193)
T 3b77_A 20 DYVLHEDGEKIYFLIKSKTD---------EYCFTNLALV 49 (193)
T ss_dssp GGSCGGGTCCEEEEEECSSE---------EEEEESSEEE
T ss_pred hhccCCCCCEEeeeeeecce---------EEEEecchhh
Confidence 35789 9999999998855 7999999999
No 8
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=69.26 E-value=13 Score=31.51 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCCceeeEEEEeeeEEeecccccccCcceee------eeecc-----cceE--------EEEEecChhhHHHHHHHHHHH
Q psy11196 36 DQGNLGVFMATNIRVVCTYYFGEVMDLGFDI------RTYYF-----GEVM--------DLGFDIRYESFENEVYHELFD 96 (103)
Q Consensus 36 dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNi------r~SKF-----G~al--------vLGFridP~e~l~~~~ke~~~ 96 (103)
.++..|++.+||-|++ ..+. ......| +-.|. |..+ ++-|.++.++.-.+++.-+..
T Consensus 22 ~~~~~GtL~lTn~~Li---F~~~-~~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDfr~~~f~f~~~~~~~~v~~sL~~ 97 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLL---FIDS-HQKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQ 97 (512)
T ss_dssp --CCEEEEEECSSEEE---EEES-SSCEEEEEGGGEEEEEECCCBTTBEEEEEEETTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEE---EeCC-CCCceEecccceeEEEEecCCCCCceEEEEecCCcEEEEEeCChHHHHHHHHHHHh
Confidence 5577999999999999 7775 4433331 11111 1223 777888877777778877665
Q ss_pred h
Q psy11196 97 S 97 (103)
Q Consensus 97 L 97 (103)
+
T Consensus 98 ~ 98 (512)
T 2yf0_A 98 L 98 (512)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.19 E-value=11 Score=20.35 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhh
Q psy11196 87 ENEVYHELFDSHHVF 101 (103)
Q Consensus 87 l~~~~ke~~~L~~~~ 101 (103)
.+++|||+++|..-.
T Consensus 3 adelykeledlqerl 17 (27)
T 3twe_A 3 ADELYKELEDLQERL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999887543
No 10
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=37.50 E-value=7 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred CcccccCCceeeeeeccee----eccCCCCceeeEEEEeeeEEeecccccccCcc
Q psy11196 13 KELKMLPREHIYSQYQGVW----NLSSDQGNLGVFMATNIRVVCTYYFGEVMDLG 63 (103)
Q Consensus 13 ~~L~llp~E~i~~~~~gV~----nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~ 63 (103)
++-.|+|+|.++-.-++|= +.+..+-.-|++++|+-||+ |... ..++
T Consensus 13 ~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRii---yvD~-~~p~ 63 (566)
T 1w7p_D 13 GQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRII---YIDD-AKPT 63 (566)
T ss_dssp -------------------------------------------------------
T ss_pred CCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEE---EecC-CCCc
Confidence 4566899999988777663 22323445799999999999 9887 6665
No 11
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=26.43 E-value=80 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=27.9
Q ss_pred eeeeecccceE--EEEEecChhhHHHHHHHHHHHh
Q psy11196 65 DIRTYYFGEVM--DLGFDIRYESFENEVYHELFDS 97 (103)
Q Consensus 65 Nir~SKFG~al--vLGFridP~e~l~~~~ke~~~L 97 (103)
..|.|+=|+.. .+..++.-.|+++.+|+++.+.
T Consensus 68 ~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~ 102 (109)
T 1rwu_A 68 TVKPSSKGNYHSVSITINATHIEQVETLYEELGKI 102 (109)
T ss_dssp EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCS
T ss_pred eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 36889999887 7788888999999999998653
No 12
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=22.63 E-value=92 Score=19.81 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.0
Q ss_pred eeeecccceE--EEEEecChhhHHHHHHHHHHHh
Q psy11196 66 IRTYYFGEVM--DLGFDIRYESFENEVYHELFDS 97 (103)
Q Consensus 66 ir~SKFG~al--vLGFridP~e~l~~~~ke~~~L 97 (103)
.|.|+=|... .+-.++.-.|+++++|+++...
T Consensus 46 ~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~ 79 (86)
T 2h9z_A 46 KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQL 79 (86)
T ss_dssp SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCS
T ss_pred cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 4778888877 6777788899999999998753
No 13
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=21.53 E-value=61 Score=22.03 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=24.4
Q ss_pred ccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCcceeeeeecccceEEEEEecChhhH
Q psy11196 15 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESF 86 (103)
Q Consensus 15 L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNir~SKFG~alvLGFridP~e~ 86 (103)
|....|.++.+.+.-+=++++ | .+||||++ |+| +-|||+|.++
T Consensus 21 l~~~~G~~l~~~la~~l~l~~-----~--~F~~isV~--------------------g~a--VTFrV~~N~~ 63 (99)
T 4hti_A 21 LRPEEGRRLVEDVARLLQVPS-----S--AFADVEVL--------------------GPA--VTFKVSANVQ 63 (99)
T ss_dssp CCHHHHHHHHHHHHHHTTCCG-----G--GEEEEEEE--------------------TTE--EEEEECCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCch-----h--heeeeeec--------------------Cce--EEEEeccCCC
Confidence 445555555555544433321 1 26788887 333 6899988764
Done!