RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11196
         (103 letters)



>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448).  This
           family consists of several eukaryotic proteins of around
           375 residues in length. The function of this family is
           unknown. It appears that this family includes a
           divergent GRAM domain.
          Length = 339

 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           GAI++  +L +LP E + S+  GVWNLSSDQGNLG F  TNIR+V
Sbjct: 141 GAIIQDGQLNLLPDEQVISRVNGVWNLSSDQGNLGTFFVTNIRLV 185



 Score = 26.9 bits (60), Expect = 1.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 13 KELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           +LK+ P E + +    V +   + G+ GV + TN+R++
Sbjct: 15 SKLKLRPGEKLLALLSSVEDTKGNNGDRGVLLVTNLRLI 53


>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41.4, worm R01H10.6,
          fly CG1126 etc. 
          Length = 55

 Score = 48.0 bits (115), Expect = 4e-09
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 21 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
          E + ++  GV +   + G+LGVF  TN+R+V
Sbjct: 1  ERVLTRINGVEDTKGNNGDLGVFFVTNLRLV 31


>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein.  This protein is
           found in herpesviruses and is needed for replication.
          Length = 1111

 Score = 28.5 bits (64), Expect = 0.53
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 17  MLPREHIYSQYQGVW-NLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVM 75
               + +  Q+Q +     SD  N G   A  ++V  +    E      D      G   
Sbjct: 675 RNFSKWLTQQFQSILGRFFSDMLNKGFLTAKTVKVALS----EDFCRLADFDLAGQGAYA 730

Query: 76  DLGFDIR 82
               + +
Sbjct: 731 KRSMEGK 737


>gnl|CDD|213761 TIGR03041, PS_antenn_a_b, chlorophyll a/b binding light-harvesting
           protein.  This model represents a family of proteins
           from the Cyanobacteria, closely homologous to and yet
           distinct from PbsC, a chlorophyll a antenna protein of
           photosystem II. Members are not univerally present in
           Cyanobacteria, while the family has several members per
           genome in Prochlorococcus marinus, with seven members in
           a strain adapted to low light conditions. These antenna
           proteins may deliver light energy to photosystem I
           and/or photosystem II [Energy metabolism,
           Photosynthesis].
          Length = 321

 Score = 25.3 bits (56), Expect = 6.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 43  FMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDI 81
           + A N  V    ++GE + L F I + YF + +DL    
Sbjct: 249 WCAVNTTVYPVEFYGEPLQLKFGI-SPYFIDTVDLPGGA 286


>gnl|CDD|225849 COG3312, AtpI, F0F1-type ATP synthase, subunit I [Energy
          production and conversion].
          Length = 128

 Score = 24.6 bits (54), Expect = 8.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 27 YQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGE 73
          +Q  W +S+  G L  F+   + V+  + F         + ++YFGE
Sbjct: 33 WQPQWGVSALLGGLAAFLPNCLFVLFAFRFRGQTFAKGRVASFYFGE 79


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,444,579
Number of extensions: 458023
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 15
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)