RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11196
         (103 letters)



>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
           P3S ADP; 3.50A {Bacteroides fragilis}
          Length = 729

 Score = 24.9 bits (54), Expect = 7.3
 Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 54  YYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYH---ELFDSHH 99
              G        +  +YFG +         E  E E +     +   H+
Sbjct: 238 TLMGHSSAKDQQLEDHYFGSIPPRVTAFMKE-LEIECHKLGIPVKTRHN 285


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,388
Number of extensions: 92591
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 4
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)