RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11196
         (103 letters)



>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 157

 Score = 23.7 bits (50), Expect = 5.4
 Identities = 5/79 (6%), Positives = 19/79 (24%)

Query: 25  SQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYE 84
            +  G W+      +    +  N           V++    ++ +   +       +  +
Sbjct: 13  EKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVAD 72

Query: 85  SFENEVYHELFDSHHVFRR 103
             E    + +         
Sbjct: 73  KTEKAGEYSVTYDGFNTFT 91


>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 83

 Score = 22.8 bits (49), Expect = 7.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 66  IRTYYFGEVMDLGFD--IRYESFENEVYHEL--FDSHHVF 101
           ++ YY G++M   F+  I +E   NEV  ++  FD+  +F
Sbjct: 4   VKAYYRGDIMITHFEPSISFEGLCNEV-RDMCSFDNEQLF 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,302
Number of extensions: 17639
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 3
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)