BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1120
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 278/383 (72%), Gaps = 2/383 (0%)
Query: 32 GDEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVN 91
G+E+ I G++G P+S ++++F + L VD+++DDDRRWK G +P+R+GKL +++
Sbjct: 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYG--LPRRSGKLKDLS 60
Query: 92 KFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEK 151
+FDA+FFGVH KQAHTMDP R++LE TYEA++D GINP SLRG+ TGV++G SE+ +
Sbjct: 61 RFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSE 120
Query: 152 TWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDG 211
+ + G+ + GC RAM+ANR+S++ GPS +D+ACSSSL AL++AY++I G
Sbjct: 121 ALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSG 180
Query: 212 HCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKD 271
C AA VGG N+ L P S+QF RLG+LSP+G CK+FD A NGYCRSE V + L K
Sbjct: 181 QCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSL 240
Query: 272 AKRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTK 331
A+RVYA +++A TN DG+KEQG+T+PSG +Q++L+ Y V P++ +IEAHGTGTK
Sbjct: 241 ARRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTK 300
Query: 332 VGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNIN 391
VGDP+E+ + C R PLLIGS KSN+GH EPASG+ ++ KV+L++E+G+ PN++
Sbjct: 301 VGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLH 360
Query: 392 FKSPRKDIPSFHNGKIQLESRPL 414
F SP +IP+ +G++Q+ +PL
Sbjct: 361 FHSPNPEIPALLDGRLQVVDQPL 383
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/466 (39%), Positives = 283/466 (60%), Gaps = 21/466 (4%)
Query: 415 DAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFSGMGSQWD 474
D ++ + ++I + +RGY +L ++ P RPLWF+ SGMG+QW
Sbjct: 449 DLAFLSMLNDIAAVPATAMPFRGYAVLGG--ERGGPEVQQVPAGERPLWFICSGMGTQWR 506
Query: 475 GMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQIGLV 534
GMG LM + F +I + +KP G+ V +++ T+ FD+I++SFV + AIQIGL+
Sbjct: 507 GMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTAIQIGLI 566
Query: 535 DILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIRGAMAAVG 594
D+L + + PD I+GHS+GE+ C YADGC + E+ +LAAY+RG E GAMAAVG
Sbjct: 567 DLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAMAAVG 626
Query: 595 LGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINVANTEKHA 654
L +++ + RCPP + ACHNS D+ TISGP+ V +FV +L+ + +FA+ + H+
Sbjct: 627 LSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHS 686
Query: 655 PLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYS 714
+ A PP L +++ ++ +PKPRS +WLSTS EA W + LA+ S
Sbjct: 687 YFMEAIA--PP---LLQELKKVIR---------EPKPRSARWLSTSIPEAQWHSSLARTS 732
Query: 715 SAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVSLTQRENA 774
SAEY+ NNL+SPVLF+E H+ ++A+ LEIAPH LLQA+L+R L + T + L ++++
Sbjct: 733 SAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR 792
Query: 775 NSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTPMISPLVRWEHSEDWYVTTYRMQ 834
+++ + L +G+L+ SG+ + L+P ++FP RGTP+ISPL++W+HS W V
Sbjct: 793 DNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDF 852
Query: 835 EKLKSGERTVVVSLKDDEME----FVSGHMIDGRNLFPATGYLATV 876
SG + + D E ++ H +DGR LFPATGYL+ V
Sbjct: 853 PN-GSGSPSAAIYNIDTSSESPDHYLVDHTLDGRVLFPATGYLSIV 897
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 191/382 (50%), Positives = 275/382 (71%), Gaps = 2/382 (0%)
Query: 33 DEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNK 92
+E+ I G++G P+S ++ +F L VD+++ DDRRWK G +P+R GKL ++++
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYG--LPRRMGKLKDLSR 59
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKT 152
FDA+FFGVH KQA+TMDP R++LE TYEA++D GINP SLRG+ TGV++G S++ +
Sbjct: 60 FDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEA 119
Query: 153 WFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGH 212
+ + G+ + GC RAM+ANR+S++ GPS T+D+ACSSSL AL+ AY++IR G
Sbjct: 120 LSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGE 179
Query: 213 CNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA 272
C+AA VGG N+ L P SLQF +LG+LS DG C+SFD GYCR+EAV + L K A
Sbjct: 180 CSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLA 239
Query: 273 KRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKV 332
+RVYA +++A TN DG KEQG+T+PSG +Q++L+ Y+ DP++L +IEAHGTGTKV
Sbjct: 240 RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKV 299
Query: 333 GDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
GDP+E+ + N C R PLLIGS KSN+GH EPASGV ++ KV+L++E+G+ PN+++
Sbjct: 300 GDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHY 359
Query: 393 KSPRKDIPSFHNGKIQLESRPL 414
+P +IP+ +G++Q+ RPL
Sbjct: 360 HTPNPEIPALQDGRLQVVDRPL 381
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 277/465 (59%), Gaps = 25/465 (5%)
Query: 415 DAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFSGMGSQWD 474
D +V + +EI + +RGY +L + + PG RP+WF+ SGMG+QW
Sbjct: 447 DLAFVGMLNEIAAVSPVAMPFRGYAVLGGEAGSQ--EVQQVPGSKRPVWFICSGMGAQWQ 504
Query: 475 GMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQIGLV 534
GMG LM + F +I + LKP G+ V ++ T+ + D+I++SFV + +IQI L+
Sbjct: 505 GMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLTSIQIALI 564
Query: 535 DILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIRGAMAAVG 594
D+L +L + PD IIGHS+GE+ C YADGC T E+ +L++Y+RG E + GAMAAVG
Sbjct: 565 DLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWRGYCIKEANVLPGAMAAVG 624
Query: 595 LGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINVANTEKHA 654
L +++ + RCPP I ACHNS D+ TISGP+ + +F+ +L+ +++F + + H+
Sbjct: 625 LSWEECKQRCPPGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRTGGIAFHS 684
Query: 655 PLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYS 714
+ AP L +R V PKPRS +WLSTS EA W LA+
Sbjct: 685 YFMESI-----APTLLRQLR---------KVILDPKPRSKRWLSTSIPEAQWQGSLARTF 730
Query: 715 SAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVSLTQRENA 774
SAEY NNL+SPVLF+E +H+ +A+ +EIAPH LLQA+L+RSL + T + L ++++
Sbjct: 731 SAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHR 790
Query: 775 NSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTPMISPLVRWEHSEDWYVTTYRMQ 834
+++ + L +G+L+ +GV + L+P ++FP RGTP+ISP ++W+HS+ W V +
Sbjct: 791 DNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPS---A 847
Query: 835 EKLKSGERTVVVSLKDDEME------FVSGHMIDGRNLFPATGYL 873
SG V++ ++ ++ H IDGR LFP TGYL
Sbjct: 848 ADFPSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYL 892
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 328 bits (841), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 249/401 (62%), Gaps = 16/401 (3%)
Query: 415 DAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFSGMGSQWD 474
D ++ + ++I + +RGY +L ++ P RPLWF+ SGMG+QW
Sbjct: 49 DLAFLSMLNDIAAVPATAMPFRGYAVL--GGERGGPEVQQVPAGERPLWFICSGMGTQWR 106
Query: 475 GMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQIGLV 534
GMG LM + F +I + +KP G+ V +++ T+ FD+I++SFV + AIQIGL+
Sbjct: 107 GMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTAIQIGLI 166
Query: 535 DILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIRGAMAAVG 594
D+L + + PD I+GHS+GE+ C YADGC + E+ +LAAY+RG E GAMAAVG
Sbjct: 167 DLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAMAAVG 226
Query: 595 LGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINVANTEKHA 654
L +++ + RCPP + A HNS D+ TISGP+ V +FV +L+ + +FA+ + H+
Sbjct: 227 LSWEECKQRCPPGVVPAXHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHS 286
Query: 655 PLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYS 714
+ A PP L +++ ++ +PKPRS +WLSTS EA W + LA+ S
Sbjct: 287 YFMEAIA--PP---LLQELKKVIR---------EPKPRSARWLSTSIPEAQWHSSLARTS 332
Query: 715 SAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVSLTQRENA 774
SAEY+ NNL+SPVLF+E H+ ++A+ LEIAPH LLQA+L+R L + T + L ++++
Sbjct: 333 SAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR 392
Query: 775 NSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTPMIS 815
+++ + L +G+L+ SG+ + L+P ++FP RGTP+IS
Sbjct: 393 DNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLIS 433
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/392 (39%), Positives = 243/392 (61%), Gaps = 16/392 (4%)
Query: 415 DAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFSGMGSQWD 474
D ++ + ++I + +RGY +L ++ P RPLWF+ SGMG+QW
Sbjct: 49 DLAFLSMLNDIAAVPATAMPFRGYAVL--GGERGGPEVQQVPAGERPLWFICSGMGTQWR 106
Query: 475 GMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQIGLV 534
GMG LM + F +I + +KP G+ V +++ T+ FD+I++SFV + AIQIGL+
Sbjct: 107 GMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTAIQIGLI 166
Query: 535 DILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIRGAMAAVG 594
D+L + + PD I+GHS+GE+ C YADGC + E+ +LAAY+RG E GAMAAVG
Sbjct: 167 DLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAMAAVG 226
Query: 595 LGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINVANTEKHA 654
L +++ + RCPP + ACHNS D+ TISGP+ V +FV +L+ + +FA+ + H+
Sbjct: 227 LSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHS 286
Query: 655 PLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYS 714
+ A PP L +++ ++ +PKPRS +WLSTS EA W + LA+ S
Sbjct: 287 YFMEAIA--PP---LLQELKKVIR---------EPKPRSARWLSTSIPEAQWHSSLARTS 332
Query: 715 SAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVSLTQRENA 774
SAEY+ NNL+SPVLF+E H+ ++A+ LEIAPH LLQA+L+R L + T + L ++++
Sbjct: 333 SAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR 392
Query: 775 NSVLYLLQALGKLYESGVHPHLANLYPKIDFP 806
+++ + L +G+L+ SG+ + L+P ++FP
Sbjct: 393 DNLEFFLAGIGRLHLSGIDANPNALFPPVEFP 424
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 223/400 (55%), Gaps = 32/400 (8%)
Query: 33 DEICITGIAGVFPDSTD--------VRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRT 84
D I I +A P + +R+ GE L+ DR W L + H P
Sbjct: 6 DPIAIVSMACRLPGGVNTPQRLWELLREGGETLSG-----FPTDRGWDLARLHHPDPDNP 60
Query: 85 GKLY--------EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS 136
G Y + FDA FFGV ++A MDP R++LE ++E V +AGI+P SLRG+
Sbjct: 61 GTSYVDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGT 120
Query: 137 KTGVFIG-ACFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACS 195
TGVF+G A F E T E + G+ +TG + A+ + R+SY +G+ GPS +VD+ACS
Sbjct: 121 ATGVFLGVAKFGYGEDTAAAE--DVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACS 178
Query: 196 SSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGY 255
SSL AL A +S+R G + A VGG + P V + F+R L+ DGR K+F A+G+
Sbjct: 179 SSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGF 238
Query: 256 CRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYS 311
SE V ++ L++ +A+R V A V + N DG G++ PSG Q+R++
Sbjct: 239 GFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDG-ASNGLSAPSGPAQRRVIRQALE 297
Query: 312 ECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTT--PLLIGSVKSNIGHSEPAS 369
C ++P ++ +EAHGTGT +GDP E AL + + R PL +GSVKSNIGH++ A+
Sbjct: 298 SCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAA 357
Query: 370 GVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQL 409
GV + KV+LA+ NG +P ++ + P + + +G + L
Sbjct: 358 GVTGLLKVVLALRNGELPATLHVEEPTPHV-DWSSGGVAL 396
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 128/303 (42%), Gaps = 38/303 (12%)
Query: 458 DTRPLWFVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKP----KGVDVKRIITDTN 512
D R + F+F G GSQW GMG EL+ P+FA I + P K DV R
Sbjct: 530 DGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLR--QAPG 587
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQT--I 570
D + + A+ + L ++ R+ + P ++GHS GE+ A+ G T+E +
Sbjct: 588 APGLDRVDVVQPVLFAVMVSLAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKL 647
Query: 571 LAAYYRGLASVETEFIRGAMAAVGLGYKDLRSRCPP---EIEVACHNSPDSSTISGPEEN 627
+ R + S+ E G MAAV LG +R R P + VA N P S +SG
Sbjct: 648 VVGRSRLMRSLSGE---GGMAAVALGEAAVRERLRPWQDRLSVAAVNGPRSVVVSGEPGA 704
Query: 628 VKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKF 687
++ F + A+ I R I+V + H+P Q R T DI
Sbjct: 705 LRAFSEDCAAEGIRVRDIDV-DYASHSP--QIERVREELLETTGDI-------------- 747
Query: 688 QPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAIT--LEI 745
P+P + ST + + T L A Y NL V F + + ++ +E+
Sbjct: 748 APRPARVTFHSTVESRSMDGTEL----DARYWYRNLRETVRFADAVTRLAESGYDAFIEV 803
Query: 746 APH 748
+PH
Sbjct: 804 SPH 806
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 205/378 (54%), Gaps = 16/378 (4%)
Query: 32 GDEICITGIAGVFPDSTDV-RDFGEKLNNKVDLISDD--DRRWKLGKEHPEIPQR-TGKL 87
G+ I I G A FP D F E ++ D I++ DR W+ P+ R G L
Sbjct: 38 GEPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWE-----PDPDARLGGXL 92
Query: 88 YEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFS 147
FDA FFG+ ++A DP RI LE ++EA+ AG +P SLRGS TGVF G
Sbjct: 93 AAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVSLRGSATGVFTGVGTV 152
Query: 148 ESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
+ ++ G+ TG + ++ + RV+Y LG+ GP+ TVD+ACSS L AL A +S
Sbjct: 153 DYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXES 212
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQ 267
+R C A GG + P +F G L+ DGRCK F +AA+G+ +E ++ LQ
Sbjct: 213 LRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQ 272
Query: 268 KSKDAKR----VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWI 323
+ A+R V A + + N DG G+T PSG QQR++ V ++ ++
Sbjct: 273 RLSAARREGRPVLAVLRGSAVNQDG-ASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYV 331
Query: 324 EAHGTGTKVGDPEEVQALENVFCPGR--TTPLLIGSVKSNIGHSEPASGVCSVTKVILAM 381
EAHGTGT++GDP EV AL + + R PL IGSVKSNIGH++ A+GV V K +LA+
Sbjct: 332 EAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLAL 391
Query: 382 ENGIIPPNINFKSPRKDI 399
+G P ++F P I
Sbjct: 392 RHGEXPRTLHFDEPSPQI 409
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 165/406 (40%), Gaps = 55/406 (13%)
Query: 426 HSDDIAGHMYRGYTILSANSDKKI--RSSTHYPGDTRPLWFVFSGMGSQWDGMGTELM-E 482
H + G L A +D +I R++T R + VF G G+QW G +L+ E
Sbjct: 515 HRAVVVGDRDEALAGLRAVADGRIADRTATGQARTRRGVAXVFPGQGAQWQGXARDLLRE 574
Query: 483 IPIFAATIEKLQAVLKPKGVDVKRIITD--TNPKMFDNILNSFVGIAAIQIGLVDILRAL 540
+FA +I + L P V +TD + + D + + A+ + L + R+
Sbjct: 575 SQVFADSIRDCERALAPH---VDWSLTDLLSGARPLDRVDVVQPALFAVXVSLAALWRSH 631
Query: 541 NITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIR-----GAMAAVGL 595
+ P ++GHS GE+ A+ G T+E L +V + +R G A+ GL
Sbjct: 632 GVEPAAVVGHSQGEIAAAHVAGALTLEDAAK------LVAVRSRVLRRLGGQGGXASFGL 685
Query: 596 GYKDLRSRC---PPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINVANTEK 652
G + R + +A N P S ++G + + +AE +A+ AR I V +
Sbjct: 686 GTEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIPV-DYAS 744
Query: 653 HAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAK 712
H+P + L +++ + P ST+ + A
Sbjct: 745 HSPQVES---------LREELLTELAG-------ISPVSADVALYSTTTGQ---PIDTAT 785
Query: 713 YSSAEYHTNNLLSPVLFEETSRHIQKNAIT--LEIAPHGLL----QAILRRSLPKTVTN- 765
+A Y NL V F++ +R + + +E++PH +L +A L +LP
Sbjct: 786 XDTA-YWYANLREQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGAC 844
Query: 766 VSLTQRENANSVLYLLQALGKLYESGVH----PHLANLYPKIDFPV 807
V T R + + ALG+ Y GV P A+ P ++ PV
Sbjct: 845 VVGTLRRDRGGLADFHTALGEAYAQGVEVDWSPAFADARP-VELPV 889
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 157/362 (43%), Gaps = 40/362 (11%)
Query: 73 LGKEHPEIPQRTGK--LYEVNKFDAAFFGVHF--------------KQAHTMDPMCRIIL 116
+G+E Q GK + + +FDA+ V K+ +D + L
Sbjct: 17 VGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYAL 76
Query: 117 EKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTW------FYEKL--QINGFGITGC 168
A+ DAG+ P+ L + G +G E TW F E+ +I+ F I
Sbjct: 77 IAAQLALEDAGLKPEDLDPERVGTLVGTGIGGME-TWEAQSRVFLERGPNRISPFFIPMM 135
Query: 169 SRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPY 228
M + ++ G GPS TV +AC++ AL A + I+ G + GG + P
Sbjct: 136 IANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPM 195
Query: 229 VSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARV 279
FA + LS P+ + F + +G+ E ++ L+ + AK R+YA +
Sbjct: 196 AIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAEL 255
Query: 280 VHAKTNCDGYKEQGIT--YPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEE 337
V + D + IT +P G + + + P+ + +I AHGT T VGD E
Sbjct: 256 VGFGRSADAHH---ITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAE 312
Query: 338 VQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRK 397
V A++ VF L++ S KS IGH A+G + A+ +G+IPP IN + P
Sbjct: 313 VLAIKRVFGD-HAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDP 371
Query: 398 DI 399
++
Sbjct: 372 EL 373
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 157/383 (40%), Gaps = 34/383 (8%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ ITG+ P R F E L + RR P Q + FD
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTAT----RRISFFDPSPYRSQVAAEA----DFD 56
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGAC--------- 145
G ++ MD + + EA +G++P +L ++ GV +G+
Sbjct: 57 PVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLER 116
Query: 146 ----FSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
S+S + W + ++ +++ V++ +G GP V + C+S L ++
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYC 256
+A ++I +G + F G + + P V F + + P+ + FD +G+
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 257 RSEAVCIMYLQKSKDA----KRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSE 312
+E + L+ A R++A + T C+ Y G+ G + E
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLK-ADGREMAETIRVALDE 295
Query: 313 CEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCP-GRTTPLLIGSVKSNIGHSEPASGV 371
D ++ +I AHG+GT+ D E A + R TP + S+KS +GHS A G
Sbjct: 296 SRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTP--VSSIKSMVGHSLGAIGS 353
Query: 372 CSVTKVILAMENGIIPPNINFKS 394
+ +LA+E+G++PP N ++
Sbjct: 354 LEIAACVLALEHGVVPPTANLRT 376
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 29/378 (7%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ ITG+ + P DV+ E N + ++ D+ ++ E P G+L N D
Sbjct: 30 VVITGMGALSPIGNDVKTTWE---NALKGVNGIDKITRIDTE-PYSVHLAGELKNFNIED 85
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
+ K+A MD + + EAV DA ++ + GV+IG+ E
Sbjct: 86 H----IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEI 141
Query: 155 YEKL-------QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
K +++ F + M +VS LG GP+ +AC++ ++ A+K
Sbjct: 142 AHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKI 201
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDG----RCKSFDEAANGYCRSEAVCI 263
++ G +A GG + F+ LS + C+ F E +G+ E I
Sbjct: 202 VQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGI 261
Query: 264 MYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFYSECEVDP 317
+ ++ + A+ +YA +V T D Y IT P+ G R ++ + ++P
Sbjct: 262 LVIESLESAQARGANIYAEIVGYGTTGDAYH---ITAPAPEGEGGSRAMQAAMDDAGIEP 318
Query: 318 KNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKV 377
K++ ++ AHGT T VGD EV+A++N F L + S KS GH A+G
Sbjct: 319 KDVQYLNAHGTSTPVGDLNEVKAIKNTFGEA-AKHLKVSSTKSMTGHLLGATGGIEAIFS 377
Query: 378 ILAMENGIIPPNINFKSP 395
L++++ + P I+ +P
Sbjct: 378 ALSIKDSKVAPTIHAVTP 395
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 161/385 (41%), Gaps = 42/385 (10%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TG+ + P ++D+ + L + I R + + R G EV FD
Sbjct: 9 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRF-----DASDQACRFGG--EVKDFD 61
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFS-----ES 149
A F + K+A MD C + + +A+ DA + L + GV IG E
Sbjct: 62 ATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLED 120
Query: 150 EKTWFYEKLQINGFGITGCSR----AMLANRVSYW----LGVNGPSYTVDSACSSSLYAL 201
++T +K G + CS M+AN S LG GP+ +AC++ A+
Sbjct: 121 QQTILLDK------GPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAI 174
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYC 256
A++ +++G+ A GG + P FA LS P + FD+ +G+
Sbjct: 175 GDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFV 234
Query: 257 RSEAVCIMYLQKSKDA----KRVYARVVHAKTNCDGYKEQGIT--YPSGALQQRLLEDFY 310
E I+ L++ + A ++Y +V CD Y IT P G R +
Sbjct: 235 MGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYH---ITAPVPDGRGATRAIAWAL 291
Query: 311 SECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASG 370
+ + P+ +++I AHGT T D E +A++ + + S KS GH SG
Sbjct: 292 KDSGLKPEMVSYINAHGTSTPANDVTETRAIKQAL-GNHAYNIAVSSTKSMTGHLLGGSG 350
Query: 371 VCSVTKVILAMENGIIPPNINFKSP 395
++A+ +PP IN ++P
Sbjct: 351 GIEAVATVMAIAEDKVPPTINLENP 375
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 35/328 (10%)
Query: 90 VNKFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLR 134
+ KFD + F VH K + D L EAV A ++ ++L
Sbjct: 57 ITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN 116
Query: 135 GSKTGVFIGACFS-----ESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPS 187
+ GV + + E + +EK ++ + M + V+ G NG
Sbjct: 117 RDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVC 176
Query: 188 YTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDG 243
++++ACSSS A+ A++SI+ G + VGG + P+ F L LS P
Sbjct: 177 KSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTR 236
Query: 244 RCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPSG 299
FD+ NG+ E ++ L+ + A++ + A VV CD Y +P G
Sbjct: 237 ASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTS-PHPEG 295
Query: 300 ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVK 359
+ ++ E E+ P+ +A++ AHGT T + E A+ V G+ P + S K
Sbjct: 296 QGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVL--GKEVP--VSSTK 351
Query: 360 SNIGHSEPASGVCSVTKVILAMENGIIP 387
S GH A+G I AM + +P
Sbjct: 352 SFTGHLLGAAGAVEAIVTIEAMRHNFVP 379
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M + V+ G NG ++++ACSSS A+ A++SI+ G + VGG + P+
Sbjct: 161 MASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIA 220
Query: 232 QFARLGVLS----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAK 283
F L LS P FD+ NG+ E ++ L+ + A++ + A VV
Sbjct: 221 GFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYG 280
Query: 284 TNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALEN 343
CD Y +P G + ++ E E+ P+ +A++ AHGT T + E A+
Sbjct: 281 NTCDAYHMTS-PHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVA 339
Query: 344 VFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIP 387
V G+ P + S KS GH A+G I AM + +P
Sbjct: 340 VL--GKAVP--VSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVP 379
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M+A ++ G+ GPS ++ +AC+S ++ + HA + I G + GG P
Sbjct: 141 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 200
Query: 232 QFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHA 282
F LS P + +D+ +G+ + ++ L++ + AK ++YA +V
Sbjct: 201 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 260
Query: 283 KTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
+ D Y +T P +GA + + + ++ + ++ AHGT T GD E QA
Sbjct: 261 GMSSDAYH---MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA 317
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++ +F + +L+ S KS GH A+G ILA+ + +PP IN +P
Sbjct: 318 VKTIFGEA-ASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 371
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M+A ++ G+ GPS ++ +AC+S ++ + HA + I G + GG P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 232 QFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHA 282
F LS P + +D+ +G+ + ++ L++ + AK ++YA +V
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 283 KTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
+ D Y +T P +GA + + + ++ + ++ AHGT T GD E QA
Sbjct: 276 GMSSDAYH---MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA 332
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++ +F + +L+ S KS GH A+G ILA+ + +PP IN +P
Sbjct: 333 VKTIFGEA-ASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 386
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 35/328 (10%)
Query: 90 VNKFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLR 134
+ KFD + F VH K + D L EAV A ++ ++L
Sbjct: 58 ITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN 117
Query: 135 GSKTGVFIGACFS-----ESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPS 187
+ GV + + E + +EK ++ + M + V+ G NG
Sbjct: 118 RDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVC 177
Query: 188 YTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDG 243
++++ACSSS A+ A++SI+ G + VGG + P+ F L LS P
Sbjct: 178 KSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTR 237
Query: 244 RCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPSG 299
FD+ NG+ E ++ L+ + A++ + A VV CD Y +P G
Sbjct: 238 ASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTS-PHPEG 296
Query: 300 ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVK 359
+ ++ E E+ P+ +A++ A GT T + E A+ V G+ P + S K
Sbjct: 297 QGAIKAIKLALEEAEISPEQVAYVNAAGTSTPANEKGESGAIVAVL--GKEVP--VSSTK 352
Query: 360 SNIGHSEPASGVCSVTKVILAMENGIIP 387
S GH A+G I AM + +P
Sbjct: 353 SFTGHLLGAAGAVEAIVTIEAMRHNFVP 380
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 155/375 (41%), Gaps = 30/375 (8%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TGIA +TD + L ++ I D + E ++P R G + + +FD
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFV---EEFDLPVRIGG-HLLEEFD 85
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
+ ++ + M ++ + +E ++ L V IG +E+ F
Sbjct: 86 HQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEVDTNRLM-----VSIGTGLGSAEELVF 140
Query: 155 -YEKLQINGFGITG--CSRAMLANRVSYWLGV----NGPSYTVDSACSSSLYALEHAYKS 207
Y+ ++ G + + N + +G+ T SAC+S A+ A++
Sbjct: 141 SYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQ 200
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVL------SPDGRCKSFDEAANGYCRSEAV 261
I G +AA GG + FA++ ++ P G C+ FD +G+ E
Sbjct: 201 IVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGG 260
Query: 262 CIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDP 317
++ ++ + AK + AR++ A DG+ P+G + + P
Sbjct: 261 ALLLIETEEHAKARGANILARIMGASITSDGFHMVA-PDPNGERAGHAITRAIQLAGLAP 319
Query: 318 KNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKV 377
++ + AH TGT+VGD E +A+ N R + + KS +GHS A G
Sbjct: 320 GDIDHVNAHATGTQVGDLAEGRAINNALGGNRPA---VYAPKSALGHSVGAVGAVESILT 376
Query: 378 ILAMENGIIPPNINF 392
+LA+ + +IPP +N
Sbjct: 377 VLALRDQVIPPTLNL 391
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 31/378 (8%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPE-IPQRTGKLYEVNKF 93
+ +TGI V P D E V+ ++ K + +P+ P + E+ F
Sbjct: 6 VVVTGIGAVTPIGNDAETSWENAKKGVNGVA------KXTRLNPDDFPVKIAA--ELKDF 57
Query: 94 DAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFS-----E 148
D + + K+A D + AV D+G+ ++ GV+IG+ E
Sbjct: 58 DVEKY-LEKKEARKXDRFTHYAIASAEXAVQDSGLVIDDSNANRVGVWIGSGIGGXETFE 116
Query: 149 SEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYK 206
++ F + +++ F + + +VS G G + T +AC+++ ++ A+K
Sbjct: 117 TQYEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFK 176
Query: 207 SIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCRSEAVC 262
I G +A GG + F LS P+ C+ FD+ +G+ E
Sbjct: 177 VIERGDADAXITGGAEAPITKXSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGEGAG 236
Query: 263 IMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFYSECEVD 316
I+ L++ + AK ++YA +V D Y IT P+ G R + + +
Sbjct: 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYH---ITAPAPNGEGAARAXKXAIDDAGLT 293
Query: 317 PKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTK 376
P + +I AHGT T D E QA++ VF L I S KS GH+ ASG
Sbjct: 294 PDKVDYINAHGTSTPYNDEYETQAIKTVFGE-HAKKLAISSTKSXTGHTLGASGGIEAIF 352
Query: 377 VILAMENGIIPPNINFKS 394
+L + + II P I+ K+
Sbjct: 353 ALLTIRDNIIAPTIHLKN 370
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 129/283 (45%), Gaps = 25/283 (8%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGA-------CFSESEKTWFYEKLQINGFGITGCSRAML 173
+A+ DAG+ + + +TG+ +G+ ++ T ++ F + +
Sbjct: 102 QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTA 161
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQF 233
+ ++ + + G +Y++ SAC++S + + +AY+ I+ G + F GGC L +S+ F
Sbjct: 162 SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCE-DLDWTLSVLF 220
Query: 234 ARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAK 283
+G +S P +++D+ +G+ + ++ L+ + A ++Y +V
Sbjct: 221 DAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYG 280
Query: 284 TNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALEN 343
DGY + PSG R ++ S + +I H T T GD E++A+
Sbjct: 281 ATSDGYD---MVAPSGEGAIRCMKMALSTV---TSKIDYINPHATSTPAGDAPEIEAIRQ 334
Query: 344 VFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGII 386
+F G P I + KS GHS A+GV +L M+N I
Sbjct: 335 IFGAGDVCP-PIAATKSLTGHSLGATGVQEAIYSLLMMQNNFI 376
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 129/283 (45%), Gaps = 25/283 (8%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGA-------CFSESEKTWFYEKLQINGFGITGCSRAML 173
+A+ DAG+ + + +TG+ +G+ ++ T ++ F + +
Sbjct: 85 QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTA 144
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQF 233
+ ++ + + G +Y++ SAC++S + + +AY+ I+ G + F GGC L +S+ F
Sbjct: 145 SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCE-DLDWTLSVLF 203
Query: 234 ARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAK 283
+G +S P +++D+ +G+ + ++ L+ + A ++Y +V
Sbjct: 204 DAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYG 263
Query: 284 TNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALEN 343
DGY + PSG R ++ S + +I H T T GD E++A+
Sbjct: 264 ATSDGYD---MVAPSGEGAIRCMKMALSTV---TSKIDYINPHATSTPAGDAPEIEAIRQ 317
Query: 344 VFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGII 386
+F G P I + KS GHS A+GV +L M+N I
Sbjct: 318 IFGAGDVCP-PIAATKSLTGHSLGATGVQEAIYSLLMMQNNFI 359
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M A +VS + GP++ V +AC++ +A+ +++ I G + GG + C+ P
Sbjct: 166 MAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLA 225
Query: 232 QFARLGVLS----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAK 283
F+R LS P C+ F +G+ E ++ L++ + A R+YA V+
Sbjct: 226 GFSRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVL--- 282
Query: 284 TNCDGYKEQG----ITYP----SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDP 335
GY G IT P GAL R + + V P+ +++I AH T T +GD
Sbjct: 283 ----GYGLSGDAGHITAPDPEGEGAL--RCMAAALKDAGVQPEEISYINAHATSTPLGDA 336
Query: 336 EEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
E +A++++F L + S K GH A+G LA +PP +N
Sbjct: 337 AENKAIKHLF-KDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNL 392
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M+A ++ G+ GPS ++ +AC+S ++ + HA + I G + GG P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 232 QFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHA 282
F LS P + +D+ +G+ + ++ L++ + AK ++YA +V
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 283 KTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
+ D Y +T P +GA + + + ++ + ++ AHGT T GD E QA
Sbjct: 276 GMSSDAYH---MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA 332
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++ +F + +L+ S S GH A+G ILA+ + +PP IN +P
Sbjct: 333 VKTIFGEA-ASRVLVSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 386
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M+A ++ G+ GPS ++ +A +S ++ + HA + I G + GG P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 232 QFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHA 282
F LS P + +D+ +G+ + ++ L++ + AK+ +YA +V
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 283 KTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
+ D Y +T P +GA + + + ++ + ++ AHGT T GD E QA
Sbjct: 276 GMSSDAYH---MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA 332
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++ +F + +L+ S KS GH A+G ILA+ + +PP IN +P
Sbjct: 333 VKTIFGEA-ASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 386
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 18/234 (7%)
Query: 177 VSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARL 236
+ LG T SACSS A+ HA++ I G + A GG + F+ +
Sbjct: 154 IGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMM 213
Query: 237 GVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCD 287
+S P+ + FD+ +G+ EA +M ++ + AK + AR++ A D
Sbjct: 214 RAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSD 273
Query: 288 GYKEQGITYPS--GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF 345
+ + P+ G R + + P ++ + AHGT T +GD E A+
Sbjct: 274 AFH---MVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAG 330
Query: 346 CPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDI 399
C + + KS +GHS A G +L + +G+IPP +N+++P +I
Sbjct: 331 C----DQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEI 380
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M+A ++ G+ GPS ++ +A +S ++ + HA + I G + GG P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 232 QFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHA 282
F LS P + +D+ +G+ + ++ L++ + AK+ +YA +V
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 283 KTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
+ D Y +T P +GA + + + ++ + ++ AHGT T GD E QA
Sbjct: 276 GMSSDAYH---MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA 332
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++ +F + +L+ S KS GH A+G ILA+ + +PP IN +P
Sbjct: 333 VKTIFGEA-ASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 386
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 26/237 (10%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M A +VS + GP++ V +A ++ +A+ +++ I G + GG + C+ P
Sbjct: 172 MAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLA 231
Query: 232 QFARLGVLS----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAK 283
F+R LS P C+ F +G+ E ++ L++ + A R+YA V+
Sbjct: 232 GFSRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVL--- 288
Query: 284 TNCDGYKEQG----ITYP----SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDP 335
GY G IT P GAL R + + V P+ +++I AH T T +GD
Sbjct: 289 ----GYGLSGDAGHITAPDPEGEGAL--RCMAAALKDAGVQPEEISYINAHATSTPLGDA 342
Query: 336 EEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
E +A++++F L + S K GH A+G LA +PP +N
Sbjct: 343 AENKAIKHLF-KDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNL 398
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 27/317 (8%)
Query: 100 VHFKQAHTMDPMCRIILEKTYEAVIDAGINPK---------SLRGSKTGVFIGACFSESE 150
V K+ MD ++ + EA+ +AG P+ ++ S G F G +E+
Sbjct: 91 VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPG--LAEAV 148
Query: 151 KTWFYEKLQ-INGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIR 209
+ ++ ++ F I + A ++S GP +AC++S+ A+ A + IR
Sbjct: 149 RIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIR 208
Query: 210 DGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCI 263
G + GG FA LS P + FD +G+ E +
Sbjct: 209 TGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAM 268
Query: 264 MYLQKSKDA----KRVYARVVHAKTNCDGYK-EQGITYPSGALQQRLLEDFYSECEVDPK 318
+ ++ A R A ++ T D Y G SGA+ R ++ +V P+
Sbjct: 269 VVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM--RAMKLALRMGDVAPE 326
Query: 319 NLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVI 378
+ ++ AH T T VGD E++AL+ VF G I S KS GH A+G I
Sbjct: 327 QVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPA--ISSTKSATGHLLGAAGAIEAAFSI 384
Query: 379 LAMENGIIPPNINFKSP 395
LA+ +G++P +N + P
Sbjct: 385 LALRDGVLPGTLNLEHP 401
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 456 PGDTRPLWFVFSGMGSQWDGMGTEL-MEIPIFAATIEKLQAVLKPK-GVDVKRIITDTNP 513
P T P+W V +G G+Q MG L + +FAA IEK+ A+++ + G V +I D
Sbjct: 136 PVTTGPVW-VLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQ 194
Query: 514 KMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAA 573
I + V I AIQI L ++LR P +IG S+GE AY G ++ A
Sbjct: 195 DY--GIETTQVTIFAIQIALGELLRHHGAKPAAVIGQSLGEAASAYFAGGLSLRDATRAI 252
Query: 574 YYR------GLASVETEFIRGAMAAVGLGYKDLRSRCP--PEIEVACHNSPDSSTISGPE 625
R G A + E+IR MA V ++R P++EV + +P + I GP
Sbjct: 253 CSRSHLMGEGEAMLFGEYIR-LMALVEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGPP 311
Query: 626 ENVKKFVAELQADNIFAR---TINVANTEKHAPL 656
E V +A +A+ FAR T ++T + PL
Sbjct: 312 EQVDAILARAEAEGKFARKFATKGASHTSQMDPL 345
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 18/234 (7%)
Query: 177 VSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARL 236
+ LG T SA SS A+ HA++ I G + A GG + F+ +
Sbjct: 154 IGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMM 213
Query: 237 GVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCD 287
+S P+ + FD+ +G+ EA +M ++ + AK + AR++ A D
Sbjct: 214 RAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSD 273
Query: 288 GYKEQGITYPS--GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF 345
+ + P+ G R + + P ++ + AHGT T +GD E A+
Sbjct: 274 AFH---MVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAG 330
Query: 346 CPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDI 399
C + + KS +GHS A G +L + +G+IPP +N+++P +I
Sbjct: 331 C----DQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEI 380
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 19/250 (7%)
Query: 159 QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
+I+ F I G + + VS G+ GP+++V +ACS+ +A+ A + I G +
Sbjct: 139 RISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVMLA 198
Query: 219 GGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA 272
GG ++ F+ LS P+ + +D +G+ E I+ L++ + A
Sbjct: 199 GGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEHA 258
Query: 273 K----RVYARVVHAKTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAH 326
K R+YA ++ + D Y IT P SG QR + +V+ L +I AH
Sbjct: 259 KKRGARIYAEIIGYGLSGDAYH---ITAPSESGEGAQRSMMAALKRAQVNVSELDYINAH 315
Query: 327 GTGTKVGDPEEVQALENVFCPGRTTPLL-IGSVKSNIGHSEPASGVCSVTKVILAMENGI 385
GT T + D E+ A+E V G P + + S KS+IGH A+G +LA+ + I
Sbjct: 316 GTST-MADVIELAAVERVL--GYYAPQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNI 372
Query: 386 IPPNINFKSP 395
P +N ++P
Sbjct: 373 APATLNLENP 382
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 138/334 (41%), Gaps = 27/334 (8%)
Query: 103 KQAHTMDPMCRIILEKTYEAVIDAGI-NPKSLRGSKTGVFIGACFSESEKTWFYEKLQIN 161
K+ +M + + + A+ DAG +S+ + GV G+ E + + +
Sbjct: 69 KKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLES 128
Query: 162 G--FGITGCSRAML-----ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCN 214
G +T S + A VS + + G SAC+S A+ +AY++I G
Sbjct: 129 GSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQT 188
Query: 215 AAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKS 269
GG P V++ F L S P + FD +G E + L++
Sbjct: 189 LMLAGGAEELSGPAVAV-FDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAATLVLEEY 247
Query: 270 KDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEA 325
+ AK ++A +V N DG +T P+ + R ++ + ++D +A++ A
Sbjct: 248 EHAKARGATIHAEIVGFGCNSDGAH---MTQPTASTMARAMQLALEDAKLDANAIAYVNA 304
Query: 326 HGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGI 385
HGT T GD E QA F G P I S+KS +GH+ A G I M+
Sbjct: 305 HGTSTDRGDVAESQATARTF--GERMP--ISSLKSYVGHTLGACGALEAWWTIEMMKRNW 360
Query: 386 IPPNINFKSPRKDIPSFHNGKIQLESRPLDAEYV 419
P +N D I+ E+R +DAEYV
Sbjct: 361 YAPTLNLT--EVDPACAPLDYIRGEARAIDAEYV 392
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 132/317 (41%), Gaps = 27/317 (8%)
Query: 100 VHFKQAHTMDPMCRIILEKTYEAVIDAGINPK---------SLRGSKTGVFIGACFSESE 150
V K+ MD ++ + EA+ +AG P+ ++ S G F G +E+
Sbjct: 91 VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPG--LAEAV 148
Query: 151 KTWFYEKLQ-INGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIR 209
+ ++ ++ F I + A ++S GP +A ++S+ A+ A + IR
Sbjct: 149 RIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIR 208
Query: 210 DGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCI 263
G + GG FA LS P + FD +G+ E +
Sbjct: 209 TGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAM 268
Query: 264 MYLQKSKDA----KRVYARVVHAKTNCDGYK-EQGITYPSGALQQRLLEDFYSECEVDPK 318
+ ++ A R A ++ T D Y G SGA+ R ++ +V P+
Sbjct: 269 VVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM--RAMKLALRMGDVAPE 326
Query: 319 NLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVI 378
+ ++ AH T T VGD E++AL+ VF G I S KS GH A+G I
Sbjct: 327 QVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPA--ISSTKSATGHLLGAAGAIEAAFSI 384
Query: 379 LAMENGIIPPNINFKSP 395
LA+ +G++P +N + P
Sbjct: 385 LALRDGVLPGTLNLEHP 401
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 16/237 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
M + VS G GP++ +AC++ +++ A + I+ G + GG +
Sbjct: 157 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVA 216
Query: 232 QFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVH 281
F+R LS P + FD +G+ E ++ L++ + AKR +YA +
Sbjct: 217 GFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCG 276
Query: 282 AKTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
+ D + IT P G + + + P + ++ AH T T +GD E +
Sbjct: 277 YGMSGDAHH---ITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEAR 333
Query: 340 ALENVFCPGRTT-PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
A++ VF T+ L S K GH A+G ILA+ +G+ P +N K+P
Sbjct: 334 AIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 390
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 139
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 197
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 198 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 257
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 258 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 311
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 312 AIREVF--GDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 362
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 139
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 197
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 198 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 257
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 258 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 311
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 312 AIREVF--GDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 362
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 139
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 197
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 198 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 257
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 258 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 311
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + ++ GHS A+GV +L +E+G I P+IN +
Sbjct: 312 AIREVF--GDKSP-AISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 362
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 93 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 151
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 152 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 209
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 210 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 269
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 270 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 323
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + + GHS A+GV +L +E+G I P+IN +
Sbjct: 324 AIREVF--GDKSP-AISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 374
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 93 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 151
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 152 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 209
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 210 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 269
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ + GT T VGD +E+
Sbjct: 270 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSQGTSTPVGDVKELA 323
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 324 AIREVF--GDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 374
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 93 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 151
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYV 229
+ VS L ++G +Y++ SAC++S + + +A + I+ G + F GG LC +
Sbjct: 152 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 209
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 210 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 269
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ + GT T VGD +E+
Sbjct: 270 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSEGTSTPVGDVKELA 323
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 324 AIREVF--GDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 374
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 183 VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGVLS- 240
+ G +Y++ SAC++S + + HA + I+ G + F GG LC + +F G LS
Sbjct: 156 IKGVNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEELCWE--XACEFDAXGALST 213
Query: 241 -----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAKTNCDGYKE 291
P +++D+ +G+ + + +++ + A +YA +V DG
Sbjct: 214 KYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVGYGATSDGADX 273
Query: 292 QGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTT 351
PSG R + + VD + + HGT T VGD +E+ A+ VF G T
Sbjct: 274 ---VAPSGEGAVRCXQ--XAXAGVDTP-IDYXNVHGTSTPVGDVKELGAIREVF--GNNT 325
Query: 352 PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
P I S K+ GHS A+GV +L +E+G I P+IN
Sbjct: 326 P-AISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSINI 365
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 17/249 (6%)
Query: 159 QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
+I+ F I G + + VS + GP+++V +AC++ +A+ A + I G +
Sbjct: 143 RISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVA 202
Query: 219 GGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA 272
GG + FA LS P + +DE +G+ E I+ L++ + A
Sbjct: 203 GGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHA 262
Query: 273 ----KRVYARVVHAKTNCDGYKEQGITYP--SGALQQRLLEDFYSECEVDPKNLAWIEAH 326
++YA V+ + D + IT P SG QR + + P + +I AH
Sbjct: 263 LARGAKIYAEVIGYGMSGDAFH---ITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAH 319
Query: 327 GTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGII 386
GT T + D E+ A+E V + + S KS+IGH A+G LA+ + I
Sbjct: 320 GTST-MADTIELGAVERVVGEA-AAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIA 377
Query: 387 PPNINFKSP 395
P +N +P
Sbjct: 378 PATLNLDNP 386
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 125/307 (40%), Gaps = 27/307 (8%)
Query: 109 DPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIG-AC----FSESE--KTWFYEKLQIN 161
DP R+ L A+ DA +P+SL GV AC F+ E K W ++
Sbjct: 77 DPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVS 136
Query: 162 GFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC 221
+ A+ ++S G+ GPS + + + L AL HA ++IR G GG
Sbjct: 137 VYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGV 195
Query: 222 NLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR--- 274
+ L P+ + G +S PD FDE A GY E I+ L+ S A+
Sbjct: 196 DSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGR 255
Query: 275 --VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKV 332
Y + + D G P+G +R + ++ P+++ + A G G
Sbjct: 256 HDAYGELAGCASTFD--PAPGSGRPAG--LERAIRLALNDAGTGPEDVDVVFADGAGVPE 311
Query: 333 GDPEEVQALENVFCPGRT-TPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNIN 391
D E +A+ VF GR P+ + K+ G G V ++++ G+I P
Sbjct: 312 LDAAEARAIGRVF--GREGVPVTV--PKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAG 367
Query: 392 FKS-PRK 397
S PR+
Sbjct: 368 VTSVPRE 374
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 93 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 151
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCN-LCLHPYV 229
+ VS L ++G +Y++ SA ++S + + +A + I+ G + F GG LC +
Sbjct: 152 SGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 209
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 210 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 269
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 270 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 323
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 324 AIREVF--GDKSPA-ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 374
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 139
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCN-LCLHPYV 229
+ VS L ++G +Y++ SA ++S + + +A + I+ G + F GG LC +
Sbjct: 140 SGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 197
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 198 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 257
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 258 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 311
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 312 AIREVF--GDKSPA-ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 362
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 33/294 (11%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQING------FGITGCSRAMLA 174
+A+ DAG++P++ + + I S + + + G G ++AM A
Sbjct: 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM-A 139
Query: 175 NRVSYWLG----VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCN-LCLHPYV 229
+ VS L ++G +Y++ SA ++S + + +A + I+ G + F GG LC +
Sbjct: 140 SGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE--M 197
Query: 230 SLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARV 279
+ +F +G LS P+ +++D +G+ + ++ +++ + A +YA +
Sbjct: 198 ACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEI 257
Query: 280 VHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQ 339
V DG + PSG R ++ + VD + ++ +HGT T VGD +E+
Sbjct: 258 VGYGATSDGAD---MVAPSGEGAVRCMK--MAMHGVDTP-IDYLNSHGTSTPVGDVKELA 311
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
A+ VF G +P I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 312 AIREVF--GDKSPA-ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIE 362
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
F+F G GSQ GMG L + FA + AVL G ++ + D T
Sbjct: 9 FMFPGQGSQAKGMGGALFDR--FADLTAQADAVL---GYSIRALCVDDPRDELGRTQFTQ 63
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILA 572
P ++ ++N+ A + TPD + GHS+GE A GCF E +
Sbjct: 64 PALY--VVNALTYYAKCEDS--------GETPDFLAGHSLGEFNALLAAGCFDFETGLKL 113
Query: 573 AYYRGLASVETEFIRGAMAAVGLGYKDLRSRCPPE-----IEVACHNSPDSSTISGPEEN 627
R A + ++ GAMAA+ ++ R E +A N+P ISGP
Sbjct: 114 VARR--AELMSQARDGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHE 171
Query: 628 VKKFVAELQADNI 640
+ + A Q D +
Sbjct: 172 IARAEALFQHDRV 184
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 130/333 (39%), Gaps = 43/333 (12%)
Query: 464 FVFSGMGSQWDGMGTELM-EIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
F+F+G G+Q+ GMG + + PI TI++ VL G D++ +I DT + +
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDLRYLI-DTEEDKLNQTRYT 61
Query: 523 FVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVE 582
I A + + +L+ PD + G S+GE A G E + RG E
Sbjct: 62 QPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEE 121
Query: 583 TE-FIRGAMAAV-GLGYKDLRSRCPPEIEV-----ACHNSPDSSTISGPEENVKKFVAEL 635
G M AV + + C E+ A +N+P I+G V + V L
Sbjct: 122 AAPADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELL 181
Query: 636 QADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMK--ARDRAHVKFQPKPRS 693
Q A ++ PLK P+ T + + A A V F
Sbjct: 182 QE----------AGAKRLIPLKVS------GPFHTSLLEPASQKLAETLAQVSF----SD 221
Query: 694 TKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAIT--LEIAPHGLL 751
NTEA + K A+ T + PV F E+ +Q+ I+ +EI P +L
Sbjct: 222 FTCPLVGNTEAAV---MQKEDIAQLLTRQVKEPVRFYESIGVMQEAGISNFIEIGPGKVL 278
Query: 752 QAILRRSLPKTVTNVSLTQRENANSVLYLLQAL 784
++ K L E+ S++ LL+ L
Sbjct: 279 SGFVK----KIDQTAHLAHVEDQASLVALLEKL 307
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 130/335 (38%), Gaps = 43/335 (12%)
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLR--------GSKTGVFIGA 144
FD +G+ A ++D + + T +A + +G P L S G +G
Sbjct: 2629 FDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGG 2688
Query: 145 CFSESEKTWFYEKL----QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
S +T ++ L + N + A+ + ++G G AC+++ +
Sbjct: 2689 M--TSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVS 2746
Query: 201 LEHAYKSIRDGHCNAAFVGGCN-LCLHPYVSL---------QFARLGVLSPDGRCKSFDE 250
+E I+ G + GG + L L + + R +S ++ D
Sbjct: 2747 VEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDR 2806
Query: 251 AANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPS-GAL---- 301
G+ ++ + L + A + V A V +A++ DG I P GAL
Sbjct: 2807 RRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTS-IPAPGLGALGAAR 2865
Query: 302 --QQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF-----CPGRTTPLL 354
++ L ++ V ++A I H T T DP E + E + PG PL
Sbjct: 2866 GGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRAPG--NPLF 2923
Query: 355 IGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPN 389
I S K+ GH++ + V + + + +G+IPPN
Sbjct: 2924 IVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPN 2958
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
++F G GSQ GMG L + F A + VL G ++ + D + F
Sbjct: 4 YMFPGQGSQAKGMGRALFDA--FPALTARADGVL---GYSIRALCQDDPDQRLSQ--TQF 56
Query: 524 VGIAAIQIGLVDIL--RALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
A + + L R PD + GHS+GE +A G F E + RG +
Sbjct: 57 TQPALYVVNALSYLKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG--EL 114
Query: 582 ETEFIRGAMAAVGLGYKDLRSR------CPPEIEVACHNSPDSSTISGPEENVKKFVAEL 635
+ G MAAV +G + R R +++A NSP ISG ++ + +
Sbjct: 115 MGDARGGGMAAV-IGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPF 173
Query: 636 QA 637
+A
Sbjct: 174 EA 175
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
++F G GSQ GMG L + F A + VL G ++ + D + F
Sbjct: 4 YMFPGQGSQAKGMGRALFDA--FPALTARADGVL---GYSIRALCQDDPDQRLSQ--TQF 56
Query: 524 VGIAAIQIGLVDIL--RALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
A + + L R PD + GHS+GE +A G F E + RG +
Sbjct: 57 TQPALYVVNALSYLKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG--EL 114
Query: 582 ETEFIRGAMAAVGLGYKDLRSR------CPPEIEVACHNSPDSSTISGPEENVKKFVAEL 635
+ G MAAV +G + R R +++A NSP ISG ++ + +
Sbjct: 115 MGDARGGGMAAV-IGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPF 173
Query: 636 QA 637
+A
Sbjct: 174 EA 175
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 126/326 (38%), Gaps = 46/326 (14%)
Query: 464 FVFSGMGSQWDGMGTEL-MEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
FVF G GSQ G EL ++ PI T ++ + L D+ ++ + D +
Sbjct: 10 FVFPGQGSQHLGXLAELGLQQPIVLETFQQASSAL---AYDLWALVQHGPQERLDQTQFT 66
Query: 523 FVGIAAIQIGLVDILRALN-ITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
+ + + AL P GHS+GE G E+ + RG
Sbjct: 67 QPALLTADVAIFRCWEALGGPKPQVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYXQ 126
Query: 582 ETEFI-RGAMAA-VGLGYKDLRSRCPPE-----IEVACHNSPDSSTISGPEENVKKFVAE 634
E + GA A +GL ++ S C ++ A NS D + ISG E V + +
Sbjct: 127 EAVPVGEGAXGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNX 186
Query: 635 LQADNI-FARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKF-QPK-P 691
+ + A+ I V + H PL Q A R A+D A + PK P
Sbjct: 187 AKTEGAKIAKRIPV-SVPSHCPLXQPAADR--------------LAQDIAKISIDSPKVP 231
Query: 692 RSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAITL--EIAPH- 748
+ EAN L+ PV + ET ++I++ I + E P
Sbjct: 232 VIHNVDVVDHNEANIIRGAL--------IKQLVRPVRWVETIKYIEEQGIKVFXECGPDN 283
Query: 749 ---GLLQAILRRS--LPKTVTNVSLT 769
GL++ I R+S LP T T + LT
Sbjct: 284 KLAGLIKRIDRQSEILPLTTTELILT 309
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 137/358 (38%), Gaps = 61/358 (17%)
Query: 462 LWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILN 521
L F+F+G G+Q+ GMG E + F + E + + G+D++ + + + +
Sbjct: 4 LGFLFAGQGAQYVGMGKEFFD--NFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEF 61
Query: 522 SFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
+ I + ++ L L + G S+GE G E + RG
Sbjct: 62 TQPAIITTNMAILTALDKLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRG---- 117
Query: 582 ETEFIRGAMAAVGLGYKDLRSRCPPE--------------IEVACHNSPDSSTISG---P 624
+F++ A+A G+G R PE +E A +NSP ISG
Sbjct: 118 --KFMQEAVAE-GIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVA 174
Query: 625 EENVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAH 684
E +F+ E + R I + + AP C +P A L D++
Sbjct: 175 LEKAMEFIKE-----VGGRAIKLPVS---APF-HCSMLQPAAEKLEDELN---------- 215
Query: 685 VKFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLF-EETSRHIQKNAIT- 742
K + +S EA +L + E T+ + PVLF + + I+ T
Sbjct: 216 -KISINKLNGIVMSNVKGEA----YLEDDNIIELLTSQVKKPVLFINDIEKMIESGVDTF 270
Query: 743 LEIAPHGLLQAILRRSLPKTVTNVSLTQRENANSVLYLLQALGKLYESGVHPHLANLY 800
+EI P L ++ K NV++ E+ S L + L KL E V NLY
Sbjct: 271 IEIGPGKALSGFVK----KINKNVTVLNVEDLKS---LEKTLSKLREMEVLAE--NLY 319
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATI---------EKLQAVLKPKGVDVKRIITDTNPK 514
F F G GSQ GMG L E + A + EKL ++ DV + + P
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPA 68
Query: 515 MFDNILNSFVGIAAIQIGLVDILRALNITPDH----IIGHSVGELGCAYADGCFTVEQTI 570
+ A+ + ++ ++ L + + + GHS+GE A G F++ T
Sbjct: 69 LM-----------AVSMAVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTA 117
Query: 571 LAAYYRGLASVETEFI-RGAMAA-VGLGYKDLRSRCPPEIE-----VACHNSPDSSTISG 623
RG A + G+MAA +GL KD+ C E +A N ISG
Sbjct: 118 RLLRIRGNAMQAAVAVGEGSMAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQIVISG 177
Query: 624 PEENVKKFV 632
+ V+ V
Sbjct: 178 EAKAVETAV 186
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 16/203 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATI-EKLQAVLKPKGVDVKRIITDTNPKMFDNILN- 521
+F G GSQ GMG E A + E+ LK VD+K+ + + N + ++
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALK---VDMKKTLFEENELLKESAYTQ 73
Query: 522 -SFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLAS 580
+ ++ I L++ + P +GHS+GE+ G E+ + + RG
Sbjct: 74 PAIYLVSYIAYQLLNKQANGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKMM 133
Query: 581 VETEFIRGA--MAAVGLGYKDLRSRCPPEIEVAC--HNSPDSSTISGPEENVKKF---VA 633
E + A M +G+ + L S C V C N ++G ++++K +
Sbjct: 134 QEACANKDASMMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGVKDDLKALEPTLK 193
Query: 634 ELQADNIFARTINVANTEKHAPL 656
E+ A + ++VA+ H P
Sbjct: 194 EMGAKRVVFLEMSVAS---HCPF 213
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 11/175 (6%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
FVF G GSQ GM ++ + T+++ L G D+ ++I D + N+
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADELNLTTNTQ 69
Query: 524 -VGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLA-SV 581
V + A +A P + GHS+GE A G + +R A
Sbjct: 70 PVMLTAAYACYRAWQQAGGAQPSIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAMQT 129
Query: 582 ETEFIRGAMAAV-GLGYKDLRSRCPPE-----IEVACHNSPDSSTISGPEENVKK 630
G MAA+ GL +R+ C +E N+P I+G + ++K
Sbjct: 130 AVPVGVGGMAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEK 184
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 173 LANRVSYWLGVNG------PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCL 225
L V+ + +N PSYTV+ C S L +++ A +SI G + GG N+
Sbjct: 64 LGQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 226 HPYVSLQFARLG 237
PY+ + AR G
Sbjct: 124 APYI-VPTARFG 134
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINP-----KSLRGSKTGVFIGACFS 147
+DA +GV +DP+ +L EA++ +GI K + S+ G IG+
Sbjct: 1168 WDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVG 1227
Query: 148 -ESEKTWFYEKLQINGFGITGCSRAMLANRVSYW-----LGVNGPSYTVDSACSSSLYAL 201
S Y+ ++ + N ++ W L GP T AC++++ +L
Sbjct: 1228 GTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESL 1287
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS 240
+ Y +I G VGG + S +FA +G S
Sbjct: 1288 DVGYDTIMQGKARVCLVGGFD-DFQEEGSYEFANMGATS 1325
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 462 LWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDV-KRIITDTNPKMFDNIL 520
+ +F G G+Q GM +L A I L + K D+ + + TD K+ +
Sbjct: 12 MAIIFPGQGAQKVGMAQDLFNNNDQATEI--LTSAAKTLDFDILETMFTDEEGKLGET-E 68
Query: 521 NSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRG-LA 579
N+ + L+ L+ LN PD +GHS+GE A + E + RG L
Sbjct: 69 NTQPALLTHSSALLAALKNLN--PDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLM 126
Query: 580 SVETEFIRGAMAAV-GLGYKDLRSRCPPE------IEVACHNSPDSSTISGPEENVKKFV 632
+ G+MAAV GL + + C IE A N P +SG + + + V
Sbjct: 127 AQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELV 186
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 117/320 (36%), Gaps = 52/320 (16%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
+F G GSQ GMG L+ P + VL G D+ + + D ++
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDLLELSLHGPQETLDRTVHCQ 85
Query: 524 VGIAAIQIGLVDILRALNITPDHI------IGHSVGELGCAYADGCFTVEQTILAAYYRG 577
I + V+ L ++ P I G SVGE G + + A R
Sbjct: 86 PAIFVASLAAVEKLH--HLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRA 143
Query: 578 LASVE-TEFIRGAMAAV--------GLGYKDLRSRCP------PEIEVACHNSPDSSTIS 622
A E +E + M +V + R C P EV+ + PD IS
Sbjct: 144 EAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVIS 203
Query: 623 GPEENVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDR 682
G +E + +F+ + + F RT + P+ R P + + + +KA D
Sbjct: 204 GHQEAL-RFLQKNSSKFHFRRT-------RMLPVSGAFHTRLMEPAV-EPLTQALKAVD- 253
Query: 683 AHVKFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNA-- 740
+K KP + + + H+ K + L+SPV +E+T I +
Sbjct: 254 --IK---KPLVSVYSNVHGHRYRHPGHIHKLLA-----QQLVSPVKWEQTMHAIYERKKG 303
Query: 741 ----ITLEIAPHGLLQAILR 756
T E+ P L AIL+
Sbjct: 304 RGFPQTFEVGPGRQLGAILK 323
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 544 PDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFI-RGAMAAV-GLGYKDLR 601
P GHS+GE A G +E + RG E + GAMAAV L ++++
Sbjct: 82 PALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQEAVPVGEGAMAAVLKLPLEEIQ 141
Query: 602 SRCP--PEIEVACHNSPDSSTISGPEENVKKFVAELQ 636
+E+A N+P+ + ISG + V++ L+
Sbjct: 142 KALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLK 178
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 26/211 (12%)
Query: 462 LWFVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNIL 520
L FVF G GSQ GM EL E+ P T + + GVD+ + +M +
Sbjct: 6 LAFVFPGQGSQSLGMLAELSELHPQIRETFAEAS---EGAGVDLWALSQGGPEEMLNRTE 62
Query: 521 NSFVGIAAIQIGLVDILRAL-NITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLA 579
+ + A + + + A P + GHS+GE A G ++ RG
Sbjct: 63 YTQPALLAAGVAVWRLWTAQRGQRPALLAGHSLGEYTALVAAGVLSLHDGAHLVRLRG-- 120
Query: 580 SVETEFIR-------GAMAAVGLGYKD--LRSRCPPE-----IEVACHNSPDSSTISGPE 625
+F++ GAMAAV LG +D + C + A NSP I G
Sbjct: 121 ----QFMQAAAPAGVGAMAAV-LGAEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDA 175
Query: 626 ENVKKFVAELQADNIFARTINVANTEKHAPL 656
V + +A L + + H PL
Sbjct: 176 AAVDRALALLAERGVRKAVKLAVSVPSHTPL 206
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 31/158 (19%)
Query: 230 SLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAKTNCDGY 289
S A L + P G +D+ NG R + V I Y + ++ R ARV
Sbjct: 6 STSAASLPTMPPSG----YDQVRNGVPRGQVVNISYFSTATNSTRP-ARVY--------- 51
Query: 290 KEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR 349
P G + + Y + W E G + D N+ G+
Sbjct: 52 ------LPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIAD--------NLIAEGK 97
Query: 350 TTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIP 387
PL+I + +N A G + TK +L N +IP
Sbjct: 98 IKPLIIVTPNTNAAGPGIADGYENFTKDLL---NSLIP 132
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 31/158 (19%)
Query: 230 SLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAKTNCDGY 289
S A L + P G +D+ NG R + V I Y + ++ R ARV
Sbjct: 6 STSAASLPTMPPSG----YDQVRNGVPRGQVVNISYFSTATNSTRP-ARVY--------- 51
Query: 290 KEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR 349
P G + + Y + W E G + D N+ G+
Sbjct: 52 ------LPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIAD--------NLIAEGK 97
Query: 350 TTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIP 387
PL+I + +N A G + TK +L N +IP
Sbjct: 98 IKPLIIVTPNTNAAGPGIADGYENFTKDLL---NSLIP 132
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 300 ALQQRLLEDFYSECEVDPK----------------NLAWIEAHGTGTKVGDPEEVQALEN 343
A QQ+ DFY DP+ +L HGT TK D E +
Sbjct: 1304 AAQQQWGNDFYKR---DPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINE 1360
Query: 344 VFCP-GRT--TPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIP 400
+ GR+ P++ K GH + A+G + + + +GIIP N N + K +
Sbjct: 1361 MMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILE 1420
Query: 401 SFH 403
F
Sbjct: 1421 QFE 1423
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 300 ALQQRLLEDFYSECEVDPK----------------NLAWIEAHGTGTKVGDPEEVQALEN 343
A QQ+ DFY DP+ +L HGT TK D E +
Sbjct: 1503 AAQQQWGNDFYKR---DPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINE 1559
Query: 344 VFCP-GRT--TPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIP 400
+ GR+ P++ K GH + A+G + + + +GIIP N N + K +
Sbjct: 1560 MMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILE 1619
Query: 401 SFH 403
F
Sbjct: 1620 QFE 1622
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 300 ALQQRLLEDFYSECEVDPK----------------NLAWIEAHGTGTKVGDPEEVQALEN 343
A QQ+ DFY DP+ +L HGT TK D E +
Sbjct: 1503 AAQQQWGNDFYKR---DPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINE 1559
Query: 344 VFCP-GRT--TPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIP 400
+ GR+ P++ K GH + A+G + + + +GIIP N N + K +
Sbjct: 1560 MMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILE 1619
Query: 401 SFH 403
F
Sbjct: 1620 QFE 1622
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 24/181 (13%)
Query: 464 FVFSGMGSQWDGMGTEL-MEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
FVF G GSQ GM ++ PI T + A L G D+ + + + +
Sbjct: 5 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQT 61
Query: 523 FVGIAAIQIGLVDILRAL-NITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
+ + L + + P + GHS+GE G + RG
Sbjct: 62 QPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRG---- 117
Query: 582 ETEFIR-------GAMAA-VGLGYKDLRSRCPPEIEVAC-----HNSPDSSTISGPEENV 628
+F++ GAMAA +GL + C E NSP I+G +E V
Sbjct: 118 --KFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAV 175
Query: 629 K 629
+
Sbjct: 176 E 176
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 24/181 (13%)
Query: 464 FVFSGMGSQWDGMGTEL-MEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
FVF G GSQ GM ++ PI T + A L G D+ + + + +
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQT 62
Query: 523 FVGIAAIQIGLVDILRAL-NITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
+ + L + + P + GHS+GE G + RG
Sbjct: 63 QPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRG---- 118
Query: 582 ETEFIR-------GAMAA-VGLGYKDLRSRCPPEIEVAC-----HNSPDSSTISGPEENV 628
+F++ GAMAA +GL + C E NSP I+G +E V
Sbjct: 119 --KFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAV 176
Query: 629 K 629
+
Sbjct: 177 E 177
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRI-ITDTNPKMFDNILNS 522
+ G GSQ +GM + +++P A +++ A K +D+ R+ T + ++ D +
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAA---DQIAAWSKAADLDLARLGTTASTEEITDTAVAQ 61
Query: 523 FVGIAAIQIGLVDILRALNITPDHII--GHSVGELGCAYA 560
+ +AA + ++ R + +I GHSVGE+ AYA
Sbjct: 62 PLIVAATLLAHQELARRCVLAGKDVIVAGHSVGEI-AAYA 100
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRI-ITDTNPKMFDNILNS 522
+ G GSQ +GM + +++P A +++ A K +D+ R+ T + ++ D +
Sbjct: 24 LLAPGQGSQTEGMLSPWLQLPGAA---DQIAAWSKAADLDLARLGTTASTEEITDTAVAQ 80
Query: 523 FVGIAAIQIGLVDILRALNITPDHII--GHSVGELGCAYA 560
+ +AA + ++ R + +I GHSVGE+ AYA
Sbjct: 81 PLIVAATLLAHQELARRCVLAGKDVIVAGHSVGEI-AAYA 119
>pdb|4H63|H Chain H, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 200
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 769 TQRENANSVLYLLQALGKLYESGVHP-HLANLYPKIDFPVSRGTPMISPLVRWE---HSE 824
T +N N +L + +L + H ++YP ++FPV P+++ L+R + E
Sbjct: 45 TIHKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVE 104
Query: 825 DWYVTTYRMQE 835
+W T + E
Sbjct: 105 EWEANTLQEYE 115
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
VF G GSQ G +L E + T + VL G D+ ++ D + + +
Sbjct: 11 IVFPGQGSQAVGXLADLAEQYAVVKQTFAEASEVL---GYDLWALVQDGPVEDLNQTFRT 67
Query: 523 FVGIAAIQIGLVDILRALNI-TPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRG 577
+ A + + + + L + P + GHS+GE G +Q I RG
Sbjct: 68 QPALLAASVAIWRVWQQLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRG 123
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 462 LWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILN 521
L V G G+Q G T+ + +P A +++ A G+D+ T + D I +
Sbjct: 3 LVLVAPGQGAQTPGFLTDWLALPGAA---DRVAAWSDAIGLDLAHFGTKADA---DEIRD 56
Query: 522 SFVGIAAIQIGLVDILRALN--ITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLA 579
+ V + + AL TP + GHSVGE+ A G + RGLA
Sbjct: 57 TSVAQPLLVAAGILSAAALGTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLA 116
Query: 580 SVETEFI 586
E +
Sbjct: 117 MAEAAAV 123
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 462 LWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILN 521
L V G G+Q G T+ + +P A +++ A G+D+ T + D I +
Sbjct: 2 LVLVAPGQGAQTPGFLTDWLALPGAA---DRVAAWSDAIGLDLAHFGTKADA---DEIRD 55
Query: 522 SFVGIAAIQIGLVDILRALN--ITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLA 579
+ V + + AL TP + GHSVGE+ A G + RGLA
Sbjct: 56 TSVAQPLLVAAGILSAAALGTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLA 115
Query: 580 SVETEFI 586
E +
Sbjct: 116 MAEAAAV 122
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 348 GRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
G TP+++GS + +P G+ SV K++ A++ I P + + P
Sbjct: 167 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKP 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,489,005
Number of Sequences: 62578
Number of extensions: 1184445
Number of successful extensions: 2660
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2477
Number of HSP's gapped (non-prelim): 97
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)