RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1120
(883 letters)
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 457 bits (1177), Expect = e-153
Identities = 178/396 (44%), Positives = 248/396 (62%), Gaps = 16/396 (4%)
Query: 33 DEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDD-DRRW-------KLGKEHPEIPQRT 84
+ I I G+A FP + D +F E L D IS+ + RW GK +R
Sbjct: 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRG 60
Query: 85 GKLYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA 144
G L +V+ FDAAFFG+ ++A MDP R++LE +EA+ DAG +P+SL GS+TGVF+GA
Sbjct: 61 GFLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGA 120
Query: 145 CFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHA 204
S+ + + +I+ + TG SRA LANR+SY+ + GPS TVD+ACSSSL AL A
Sbjct: 121 SSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHLA 180
Query: 205 YKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIM 264
+S+R G C+ A VGG NL L P + + F++ G+LSPDGRC+ FD A+GY R E V ++
Sbjct: 181 CQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVV 240
Query: 265 YLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNL 320
L++ DA R +YA + + N DG +GIT PSG Q L+ Y+ VDP ++
Sbjct: 241 VLKRLSDALRDGDRIYAVIRGSAVNQDGRT-KGITAPSGEAQAALIRRAYARAGVDPSDI 299
Query: 321 AWIEAHGTGTKVGDPEEVQALENVFCPGR--TTPLLIGSVKSNIGHSEPASGVCSVTKVI 378
++EAHGTGT +GDP EV+AL VF R PLLIGSVKSNIGH E A+G+ + KV+
Sbjct: 300 DYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVV 359
Query: 379 LAMENGIIPPNINFKSPRKDIPSFH-NGKIQLESRP 413
LA+E+G+IPPN++F++P I ++ E+RP
Sbjct: 360 LALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARP 395
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 312 bits (802), Expect = 1e-99
Identities = 133/384 (34%), Positives = 179/384 (46%), Gaps = 126/384 (32%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
I I G++ FP + D +F W L L +V+ FD
Sbjct: 1 IAIVGMSCRFPGADDPEEF-----------------WDLLLA---------GLDDVDLFD 34
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
AAFFG+ ++A MDP R++LE +EA+ DAGI+P+SLRGS+TGVF+G S+
Sbjct: 35 AAFFGISPREAEAMDPQQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGVSSSD------ 88
Query: 155 YEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCN 214
Y S TVD+ACSSSL AL A +S+R G C+
Sbjct: 89 Y-------------------------------SVTVDTACSSSLVALHLACQSLRSGECD 117
Query: 215 AAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR 274
A GG NL L P + +R G+LSPDGRCK+FD +A+GY R E V ++ L++ DA R
Sbjct: 118 MALAGGVNLILSPDTFVGLSRAGMLSPDGRCKTFDASADGYVRGEGVGVVVLKRLSDALR 177
Query: 275 ----VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGT 330
+ A + + N DG GIT PSG Q
Sbjct: 178 DGDPILAVIRGSAVNQDGRSN-GITAPSGPAQ---------------------------- 208
Query: 331 KVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNI 390
LLIGSVKSNIGH E A+GV + KV+LA+++G+IPP +
Sbjct: 209 ----------------------LLIGSVKSNIGHLEAAAGVAGLIKVVLALKHGVIPPTL 246
Query: 391 NFKSPRKDIPSFHNGKIQLESRPL 414
+F++P N I LE PL
Sbjct: 247 HFETP--------NPHIDLEESPL 262
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 333 bits (855), Expect = 3e-99
Identities = 156/399 (39%), Positives = 224/399 (56%), Gaps = 23/399 (5%)
Query: 30 APGDEICITGIAGVFPDSTDVRDFGEKLNNKVDLISD-DDRRWKL--------GKEHPEI 80
+ I I G+A FP + +F + L D I++ RW +
Sbjct: 1 QLIEPIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSY 60
Query: 81 PQRTGKLYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGV 140
+ G L +V+ FDA FFG+ ++A MDP R++LE +EA+ DAGI P SLRGS TGV
Sbjct: 61 SRWGGFLDDVDDFDALFFGISPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLRGSATGV 120
Query: 141 FIGACFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
F GA ++ + + ITG S ++ A R+SY LG++GPS TVD+ACSSSL A
Sbjct: 121 FAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSGPSVTVDTACSSSLVA 180
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEA 260
+ A +S+R G C+ A GG NL L P S F+ G+LSPDGRCK+FD A+GY R E
Sbjct: 181 VHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEG 240
Query: 261 VCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVD 316
++ L++ DA+ R+YA + + N DG G+T P+ Q ++ + ++ +D
Sbjct: 241 AGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSN-GLTAPNLEAQADVIREALADAGID 299
Query: 317 PKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR-TTPLLIGSVKSNIGHSEPASGVCSVT 375
P + ++EAHGTGT +GDP E AL V+ G P IGSVKSNIGH E A+G+ +
Sbjct: 300 PATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLI 359
Query: 376 KVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPL 414
K LA+++G IPP ++F +P N +I +S P
Sbjct: 360 KTALALKHGYIPPTLHFDTP--------NPEIDFDSSPF 390
Score = 138 bits (349), Expect = 3e-33
Identities = 102/435 (23%), Positives = 172/435 (39%), Gaps = 50/435 (11%)
Query: 463 WFVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKPK-GVDVKRIITDTNPKMFDNIL 520
FVF G GSQW GMG EL + P+FA+ + L+A+L G + +I + ++I
Sbjct: 528 VFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESID 587
Query: 521 NSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQ--TILAAYYRGL 578
+ + A+ + L + R+ + P +IGHS+GEL A A G ++E ++A R +
Sbjct: 588 FAQPALFAVSVALAALWRSWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLM 647
Query: 579 ASVETEFIRGAMAAVGLGYKD----LRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAE 634
+ E GAM AV L L + P++ +A NSP I+G E + +A
Sbjct: 648 QQLAGE---GAMLAVELSLLAEVQELLALGRPQVPLAAVNSPQQVVIAGDPEAIAALIAR 704
Query: 635 LQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRST 694
LQA + AR + V+ HA P + PR
Sbjct: 705 LQAQGVRARRLAVS----HAF--HSPLMDPILDEFAAALA-------------DLAPRPP 745
Query: 695 KWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNA--ITLEIAPHGLLQ 752
+ SN + A+Y +L PV F + + +E+ P +L
Sbjct: 746 QIPLISNVTGDLAG--EPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLT 803
Query: 753 AILRRSLPKTVTNVSLTQRENANSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTP 812
++++L + T R +A +L L AL +L+ +GV + L D G
Sbjct: 804 ESIKQTLRDAI-LSIATLRRDAPELLSFLAALAQLFVAGVAVDWSPLVYGPD-----GRL 857
Query: 813 MISPLVRWEHSEDW----------YVTTYRMQEKLKSGERTVVVSLKDDEMEFVSGHMID 862
+ P ++ W + + + SGE + SL + +++ H +
Sbjct: 858 VELPTYPFQRQRFWLDPEALGVASHPLLGAVLGRPSSGEVVLQGSLDLLAVPWLADHDVR 917
Query: 863 GRNLFPATGYLATVC 877
P Y+
Sbjct: 918 NVAALPGAAYVELAL 932
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 234 bits (599), Expect = 4e-71
Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 10/246 (4%)
Query: 33 DEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNK 92
+ + ITG+ FP +F E L D I + G P + G++Y
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLS-GLYPP--SRVAGEIY-GFD 57
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSK-TGVFIGACFSESEK 151
FDAAFFG+ ++A MDP R+ LE +EA+ DAG++P SLRGS TGVF+G+ + +
Sbjct: 58 FDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAE 117
Query: 152 TWFYEK----LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
+ +++ + ++ A R+SY LG+ GPS TVD+ACSSSL AL A +S
Sbjct: 118 LQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSLVALHAAVRS 177
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLG-VLSPDGRCKSFDEAANGYCRSEAVCIMYL 266
IR G C+ A GG L P F+ G +LSPDG CK+FD A+G+ R E V + L
Sbjct: 178 IRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVRGEGVGAVLL 237
Query: 267 QKSKDA 272
++ +A
Sbjct: 238 KELSEA 243
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 209 bits (534), Expect = 6e-61
Identities = 101/342 (29%), Positives = 157/342 (45%), Gaps = 33/342 (9%)
Query: 463 WFVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPK-GVDVKRIITDTNPKMFDNIL 520
FVFSG GSQW GMG +L++ P+FAA I + KP+ G V ++ + + + +
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60
Query: 521 NSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLAS 580
+ A+QI L +LR+ +TP ++GHS+GE+ A G ++E+ L R
Sbjct: 61 VVQPALFAMQIALAALLRSYGVTPAAVVGHSLGEIAAAVVAGALSLEEAALVVALRSRLM 120
Query: 581 VETEFIRGAMAAVGLGYKDLRS--RCPPEIEVACHNSPDSSTISGPEENVKKFVAELQAD 638
+ G MAAVGL +++ R P + VA NSP S ++GP+E + +FV ++A
Sbjct: 121 RQLA-GPGGMAAVGLPAEEVEQLARWPDRVVVAIVNSPRSVVVAGPQEALDEFVERVEAR 179
Query: 639 NIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLS 698
+ AR I V + H+P Q A DI PR + +
Sbjct: 180 GVRARVIAV-DYASHSP--QVEAIGDALALALADIAP-------------RTPRVPFYST 223
Query: 699 TSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHI--QKNAITLEIAPHGLLQAILR 756
TS + + L AEY NL +PV F E Q + +E++PH +L A +
Sbjct: 224 TS-GDPSDQREL----DAEYWYRNLRNPVRFAEAVLAAAEQGYLVFVEVSPHPVLLAAVE 278
Query: 757 RSL----PKTVTNVSLTQRENANSVLYLLQALGKLYESGVHP 794
+L K T V R + ++ L AL + +GV
Sbjct: 279 ETLKSADGKDATLVGTLIR-DQGDLVTFLYALAVAHLTGVAV 319
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 196 bits (501), Expect = 2e-56
Identities = 91/316 (28%), Positives = 139/316 (43%), Gaps = 48/316 (15%)
Query: 465 VFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKG----VDVKRIITDTNPKMFDNI 519
VF+G GSQW GMG EL E P+F +++ A L+P +DV +
Sbjct: 1 VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGAASL--LDT 58
Query: 520 LNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLA 579
+ + A+Q+ L +LR+ + PD ++GHS GE+ AY G ++E RG
Sbjct: 59 EVAQPALFAVQVALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSLEDAARLVAARGRL 118
Query: 580 SVETEFIRGAMAAVGLGYKDLRSRC---PPEIEVACHNSPDSSTISGPEENVKKFVAELQ 636
GAM AVGL +++ P + VA NSP S +SG E+ V + A L+
Sbjct: 119 MQALP-GGGAMLAVGLSEEEVEPLLAGVPDRVSVAAVNSPSSVVLSGDEDAVDELAARLE 177
Query: 637 ADNIFARTINVANTEKHA-------PLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQP 689
A+ IFAR + V HA P+ D+ RA + A + +P
Sbjct: 178 AEGIFARRLKV----DHAFHSPHMEPIL-------------DEFRAAL-----AGLTPRP 215
Query: 690 KPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNA---ITLEIA 746
PR ++ST A+ A+Y NL PV F + R + + LE+
Sbjct: 216 -PR-IPFVST--VTGTLIDG-AELDDADYWVRNLREPVRFADAVRALLAEGGVTVFLEVG 270
Query: 747 PHGLLQAILRRSLPKT 762
PH +L ++++L
Sbjct: 271 PHPVLTGPIKQTLAAA 286
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 174 bits (444), Expect = 1e-47
Identities = 99/365 (27%), Positives = 162/365 (44%), Gaps = 48/365 (13%)
Query: 92 KFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS 136
+FDA+ F K+ MD + L EA+ DAG++P+ L
Sbjct: 37 RFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAEEALADAGLDPEELDPE 96
Query: 137 KTGVFIG---ACFSESEKTW--FYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYT 189
+ GV IG + E+ + EK +++ F + M A +V+ LG+ GP+YT
Sbjct: 97 RIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYT 156
Query: 190 VDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGR 244
V +AC+S +A+ A + IR G + GG + P FA L LS P+
Sbjct: 157 VSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKA 216
Query: 245 CKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS-- 298
+ FD+ +G+ E ++ L+ + AK ++YA ++ + D Y IT P
Sbjct: 217 SRPFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYH---ITAPDPD 273
Query: 299 --GALQ--QRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLL 354
GA + + L D + P+++ +I AHGT T + D E +A++ VF +
Sbjct: 274 GEGAARAMRAALAD----AGLSPEDIDYINAHGTSTPLNDAAESKAIKRVF-GEHAKKVP 328
Query: 355 IGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPL 414
+ S KS GH A+G +LA+ +G++PP IN + P P + E+R
Sbjct: 329 VSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEP---DPECDLDYVPNEAREA 385
Query: 415 DAEYV 419
Y
Sbjct: 386 PIRYA 390
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 157 bits (400), Expect = 4e-45
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 276 YARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDP 335
YA + + N DG G+T P+G Q R + ++ +DP+++ ++EAHGTGT +GDP
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 336 EEVQALENVFCPG-RTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
E +AL+ VF PG + PL +GSVKSNIGH E A+GV + K +LA+ +G+IPP +N
Sbjct: 61 IEAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 119
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 159 bits (405), Expect = 2e-42
Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 33/320 (10%)
Query: 108 MDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFS--ESEKTWFYEKLQING--- 162
MD ++ + EA+ DAG++ + + GV IG+ E + L
Sbjct: 68 MDRFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKR 127
Query: 163 ----FGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
+ A V+ G+ GP+YT +AC++ +A+ A + IR G +
Sbjct: 128 ISPFLVPKMLPN-LAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGKADVVIA 186
Query: 219 GGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK 273
GG + P F + LS P+ + FD+ +G+ E + L++ + A
Sbjct: 187 GGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGALVLEELEHAL 246
Query: 274 ----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QRLLEDFYSECEVDPKNLAWI 323
++YA +V T D Y IT P+ GA++ + L D + P+++ +I
Sbjct: 247 ARGAKIYAEIVGYGTTSDAYH---ITAPAPDGEGAIRAMRAALAD----AGLTPEDIDYI 299
Query: 324 EAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMEN 383
AHGT T D E A++ VF L + S KS GH+ A+G +LA+ +
Sbjct: 300 NAHGTSTPANDKAESLAIKRVF-GEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALRD 358
Query: 384 GIIPPNINFKSPRKDIPSFH 403
GIIPP IN +P +
Sbjct: 359 GIIPPTINLDNPDPEAADLD 378
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 139 bits (352), Expect = 3e-36
Identities = 66/282 (23%), Positives = 131/282 (46%), Gaps = 10/282 (3%)
Query: 116 LEKTYEAVIDAGINPKSLRGSKTGVFIGAC--FSESEKTWFYEKLQINGFGITGCSRAML 173
E A+ DAG++ + + GV +G + + + +T
Sbjct: 16 FEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGA 75
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQF 233
+ +++ LG++GP+Y V +AC+ SL+AL A ++++G + GG P
Sbjct: 76 SGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFD 135
Query: 234 ARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGY 289
A + +P+ ++FD AA+G+ + + +++ + A +YA +V DG
Sbjct: 136 AMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGA 195
Query: 290 KEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR 349
G PS R ++ + + ++ ++ AHGTGT +GD +E++ L + F
Sbjct: 196 GM-GAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD-- 252
Query: 350 TTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNIN 391
+ + K+ G+ A+ V +V + +L +E+G IPP+I+
Sbjct: 253 -KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIH 293
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 136 bits (343), Expect = 2e-34
Identities = 98/406 (24%), Positives = 158/406 (38%), Gaps = 54/406 (13%)
Query: 37 ITGIAGVFPDST---DVRDFGEKLNN------KVDLISDDDRRWKLGKEHPEIPQRTGKL 87
ITGI V P +V +F E L V + R G
Sbjct: 5 ITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRFDRGVAG------------- 51
Query: 88 YEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGIN-PKSLRGSKTGVFIGACF 146
++ D G K+ +D + L T EA+ DAGI P + S+ GV +G+
Sbjct: 52 -QIPTGD--IPGWDAKRTGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGM 108
Query: 147 SESEKTWFYEKLQINGFGITGCSRAMLANRV------SYWLGVNGPSYTVDSACSSSLYA 200
KL + ML+ L +GP T AC+++L A
Sbjct: 109 GGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEA 168
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGY 255
L+ A ++IR G + VGG FA +G LS P+ + FDE +G+
Sbjct: 169 LDLAVEAIRSGKADIVVVGGVED-PLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGF 227
Query: 256 CRSEAVCIMYLQKSKDA----KRVYARVVHAKTNCDGYKEQGITYPSGAL---QQRLLED 308
+E ++ L++++ A +Y RV + DG + + + + L
Sbjct: 228 VEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAG-RSVPAGGKGIARAIRTAL-- 284
Query: 309 FYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPA 368
++ + +L I AHGT T D E +A+ V PL + + K+ GHS+ A
Sbjct: 285 --AKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVA-GALGAPLPVTAQKALFGHSKGA 341
Query: 369 SGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPL 414
+G + + ++E+G+IPP N D+ + SR L
Sbjct: 342 AGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLS---VVGLSRDL 384
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 129 bits (325), Expect = 7e-32
Identities = 80/362 (22%), Positives = 144/362 (39%), Gaps = 36/362 (9%)
Query: 62 DLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYE 121
L + L +P + EV++ + F F + E
Sbjct: 32 FLPDCIPEQKALENLVAAMPCQIAA--EVDQSE--FDPSDFAPTKRESRATHFAMAAARE 87
Query: 122 AVIDAGINPKS-LRGSKTGVFIG-----ACFSESEKTWFYEK--LQINGFGITGCSRAML 173
A+ DA ++ S + GV IG E YEK +++ + I M
Sbjct: 88 ALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMA 147
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQF 233
A V+ + GPS + +AC++ + + A++ I+ G + GG + P F
Sbjct: 148 AGLVAIKHKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGF 207
Query: 234 ARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAK 283
+R+ L P + FD+ G+ E I+ L++ + A R +YA +
Sbjct: 208 SRMRALCTKYNDDPQRASRPFDKDRAGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYG 267
Query: 284 TNCDGYKEQGITYPS-------GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPE 336
++ D + IT P ++ L + ++ ++ ++ AH T T +GD
Sbjct: 268 SSSDAHH---ITAPHPDGRGARRCMENALKDG----ANININDVDYVNAHATSTPIGDKI 320
Query: 337 EVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPR 396
E++A++ VF L + S K +GH A+G IL++ IIPP IN ++P
Sbjct: 321 ELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPD 380
Query: 397 KD 398
+
Sbjct: 381 AE 382
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 122 bits (310), Expect = 7e-30
Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 39/338 (11%)
Query: 92 KFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS 136
+FDA+ V K+A MD + L EAV D+G++ +
Sbjct: 37 RFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEEDAE 96
Query: 137 KTGVFIGA-----CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYT 189
+ GV IG+ E + EK +++ F I M A ++S G GP++
Sbjct: 97 RVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHA 156
Query: 190 VDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGR 244
V +AC++ +A+ A++ I+ G + GG + P FA + LS P+
Sbjct: 157 VVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKA 216
Query: 245 CKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS-- 298
+ FD+ +G+ E ++ L++ + AK ++YA +V + D Y IT P+
Sbjct: 217 SRPFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYH---ITAPAPE 273
Query: 299 GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTP-LLIGS 357
G R + + ++P+++ +I AHGT T +GD E +A++ VF G L + S
Sbjct: 274 GEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVF--GDHAYKLAVSS 331
Query: 358 VKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
KS GH A+G +LA+ +GI+PP IN +P
Sbjct: 332 TKSMTGHLLGAAGAIEAIFTVLALRDGIVPPTINLDNP 369
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 123 bits (311), Expect = 1e-28
Identities = 104/426 (24%), Positives = 174/426 (40%), Gaps = 57/426 (13%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISD-DDRRWKLGKEHPEIPQRTGKLY----- 88
I I G+A +F +S + F + + K+D I+D W + K Y
Sbjct: 9 IAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGG 68
Query: 89 ---EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGAC 145
EV+ F+ FG+ D + L E + DAG+ P K G+ +G
Sbjct: 69 FLPEVD-FNPMEFGLPPNILELTDISQLLSLVVAKEVLNDAGL-PDGYDRDKIGITLGVG 126
Query: 146 FSESEKTWFYEKLQ-------INGFGITGCSRAML------------------------A 174
+ + + +LQ G+ ML +
Sbjct: 127 GGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVIS 186
Query: 175 NRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFA 234
R++ + G + VD+AC+ SL A+ A + +G GG P++ + F+
Sbjct: 187 GRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFS 246
Query: 235 RLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYK 290
+ + + + FD + G E + +M L++ +DA+R +YA + + DG K
Sbjct: 247 KTPAFTTNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDG-K 305
Query: 291 EQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-- 348
+ I P Q + L+ Y + P IEAHGTGT GD E L +VF
Sbjct: 306 FKSIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDND 365
Query: 349 RTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQ 408
+ + +GSVKS IGH++ +G + K +LA+ + ++PP IN P N K+
Sbjct: 366 QKQHIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQP--------NPKLD 417
Query: 409 LESRPL 414
+E+ P
Sbjct: 418 IENSPF 423
Score = 55.0 bits (132), Expect = 2e-07
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 24/221 (10%)
Query: 465 VFSGMGSQWDGMGTELM-EIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFD------ 517
+F+G GSQ+ MG EL P + +V G + P +F+
Sbjct: 584 LFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIP-VFNDESRKA 642
Query: 518 ------NILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTIL 571
N ++ I + +G + D GHS GEL A G + + ++
Sbjct: 643 QEEALTNTQHAQSAIGTLSMGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMM 702
Query: 572 AAYYRG--LASVETEFIRGAMAAVGLGYK---DLRSRCPPEIE---VACHNSPDSSTISG 623
A+ RG +A+ E G M AV L + + C + E +A +NSP I+G
Sbjct: 703 LAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQLVIAG 762
Query: 624 PEENVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRP 664
++ L+ A + V+ H PL AQ+P
Sbjct: 763 VSTQIQIAAKALKEKGFKAIPLPVSGA-FHTPL-VAHAQKP 801
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 113 bits (284), Expect = 2e-26
Identities = 104/427 (24%), Positives = 170/427 (39%), Gaps = 73/427 (17%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKL---NNKVDLISDD---DRRWKLGKEHPEIPQRTGKLY 88
I +TG+ V P V F ++L + + ++D D K+G + P++ + +
Sbjct: 6 IVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGF 65
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS-KTGVFIGACFS 147
+ +++ K MD + EA+ AG +P +L +T IG+
Sbjct: 66 DPDRYLDP------KDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGS--- 116
Query: 148 ESEKTWFYEKLQINGFGI------TGCSRA---------------MLANRVSYWLGVNGP 186
+ GF T SR M A VS G GP
Sbjct: 117 -----------GVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGP 165
Query: 187 SYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQ-FARLGVLS----- 240
+AC++ + A+ A + IR G + A GG + VSL FA LS
Sbjct: 166 LGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDR-VSLAGFAAARALSTRFND 224
Query: 241 -PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVHAKTNCDGYKEQGIT 295
P+ + FD +G+ E I+ ++ + A A +V T+ D Y +T
Sbjct: 225 APEQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYH---MT 281
Query: 296 YP----SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTT 351
GA +R + + + P+ + + AH T T VGD EV A++ VF G +
Sbjct: 282 AGPEDGEGA--RRAMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVF--GHVS 337
Query: 352 PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLES 411
L + S KS GH A+G ILA+ + I PP +N ++P + ++
Sbjct: 338 GLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLD--VVANKA 395
Query: 412 RPLDAEY 418
RP+D +Y
Sbjct: 396 RPMDMDY 402
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 110 bits (278), Expect = 8e-26
Identities = 88/339 (25%), Positives = 143/339 (42%), Gaps = 41/339 (12%)
Query: 92 KFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS 136
FD + V K+A MD + + +AV DAG+
Sbjct: 38 HFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEENAD 97
Query: 137 KTGVFIGAC---FSESEKTWFYEKLQING------FGITGCSRAMLANRVSYWLGVNGPS 187
+ GV IG+ E+ + L G F + M A VS G GP+
Sbjct: 98 RIGVIIGSGIGGLETIEEQ--HITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPN 155
Query: 188 YTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PD 242
+++ +AC++ +A+ A + I G + GG + P FA LS P+
Sbjct: 156 HSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPE 215
Query: 243 GRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS 298
+ FD+ +G+ E I+ L++ + AK ++YA VV D Y +T P+
Sbjct: 216 RASRPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYH---MTAPA 272
Query: 299 --GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIG 356
G R ++ + ++P+++ +I AHGT T GD E QA++ VF + +
Sbjct: 273 PDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYK-VAVS 331
Query: 357 SVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
S KS GH A+G +LA+ + +IPP IN +P
Sbjct: 332 STKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNP 370
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 100 bits (252), Expect = 1e-22
Identities = 89/343 (25%), Positives = 135/343 (39%), Gaps = 45/343 (13%)
Query: 103 KQAHTMDPMCRIILEKTYEAVIDAG-INPKSLRGSKTGVFIGACFSESEKTWFYEKLQIN 161
K+ +M + + + A+ DAG + L + G+ A S + T I
Sbjct: 65 KKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMGI---AYGSSTGST-----DPIG 116
Query: 162 GFG---ITGCSRAMLAN------------RVSYWLGVNGPSYTVDSACSSSLYALEHAYK 206
FG + G + A V + G+ G SAC+S + +AY+
Sbjct: 117 AFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYE 176
Query: 207 SIRDGHCNAAFVGGCN-LCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEA 260
+I+ G+ GG LC P + F L S P+ + FD +G E
Sbjct: 177 AIKYGYQTVMLAGGAEELC--PTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGEG 234
Query: 261 VCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVD 316
+ L++ + AK +YA +V TN DG +T P Q +E + +
Sbjct: 235 AGTLVLEELEHAKARGATIYAEIVGFGTNSDGAH---VTQPQAETMQIAMELALKDAGLA 291
Query: 317 PKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTK 376
P+++ ++ AHGT T GD E QA VF G P I S+KS GH+ A G
Sbjct: 292 PEDIGYVNAHGTATDRGDIAESQATAAVF--GARMP--ISSLKSYFGHTLGACGALEAWM 347
Query: 377 VILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPLDAEYV 419
I M G P +N + I E+R +D EYV
Sbjct: 348 SIEMMNEGWFAPTLNLTQVDPACGALD--YIMGEAREIDTEYV 388
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 100 bits (251), Expect = 2e-22
Identities = 96/350 (27%), Positives = 148/350 (42%), Gaps = 63/350 (18%)
Query: 93 FDAAFFGVH-------FKQAHTMDP-----MCRII---LEKTYEAVIDAGINPKSLRGSK 137
FDA+ F V F MDP R I L+ EA+ DAG P+ L +
Sbjct: 39 FDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLPEELDAER 98
Query: 138 TGVFIGA--------------CFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGV 183
GV + CF + + +I+ F I ML +S G+
Sbjct: 99 FGVSSASGIGGLPNIEKNSIICFEKGPR-------KISPFFIPSALVNMLGGFISIEHGL 151
Query: 184 NGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS--- 240
GP+ + +AC++ +A+ A K+I G + V G + P FA + LS
Sbjct: 152 KGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRN 211
Query: 241 --PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQG- 293
P + FD+ +G+ E + L++ + AK ++YA ++ G+ E G
Sbjct: 212 DDPKKASRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEII-------GFGESGD 264
Query: 294 ---ITYPS--GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG 348
IT P+ G L R ++ +PK + +I AHGT T D E AL+ +F
Sbjct: 265 ANHITSPAPEGPL--RAMKAALEMAG-NPK-IDYINAHGTSTPYNDKNETAALKELFGSK 320
Query: 349 RTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKD 398
P + S K IGH A+G I+AM +GI+PP IN ++P +
Sbjct: 321 EKVPP-VSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPE 369
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 99.3 bits (247), Expect = 2e-21
Identities = 91/348 (26%), Positives = 150/348 (43%), Gaps = 44/348 (12%)
Query: 89 EVNKFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINP--- 130
E+ +FD + F K + MD +L +A+ D GI
Sbjct: 162 EIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVM 221
Query: 131 KSLRGSKTGVFIGAC------FSESEKTWFYEKLQINGFGI----TGCSRAMLANRVSYW 180
K L +K GV IG+ F+++ + ++N F + T AMLA
Sbjct: 222 KELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMD---- 277
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS 240
LG GP+Y++ +AC++S + + +A I G + GG + + P F LS
Sbjct: 278 LGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALS 337
Query: 241 -----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKE 291
P + +D +G+ E ++ L++ + AK+ +YA + CD Y
Sbjct: 338 QRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAY-H 396
Query: 292 QGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTT 351
+P GA +E ++ V +++ +I AH T TK GD +E QAL + C G+
Sbjct: 397 MTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQAL--MRCFGQNP 454
Query: 352 PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDI 399
L + S KS IGH A+G + A+ G + PNIN ++P +
Sbjct: 455 ELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGV 502
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 94.3 bits (234), Expect = 3e-20
Identities = 81/342 (23%), Positives = 142/342 (41%), Gaps = 42/342 (12%)
Query: 90 VNKFDAAFFGVHF---------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLR 134
+ FD F F K A MD + + +A+ D+G+
Sbjct: 38 IEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGIQALDDSGLEVTEEN 97
Query: 135 GSKTGVFIGACFS-----ESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPS 187
+ GV IG+ E+ EK +++ F + M+A +S G+ GP+
Sbjct: 98 AHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPN 157
Query: 188 YTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PD 242
+ +AC++ L+ + HA + I G +A GG P F LS P
Sbjct: 158 IAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQ 217
Query: 243 GRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS 298
+ +D+ +G+ + +M L++ + AK ++YA +V + D Y +T PS
Sbjct: 218 KASRPWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYH---MTSPS 274
Query: 299 -----GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPL 353
GAL +E + V + + ++ AHGT T GD E++ ++ + +
Sbjct: 275 EDGSGGALA---MEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQV 331
Query: 354 LIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
L+ S KS GH A+G ++++ + I+PP IN P
Sbjct: 332 LVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDP 373
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 87.9 bits (218), Expect = 3e-19
Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 37/241 (15%)
Query: 153 WFYEKLQING--FGITGCSRAM--LANRVSYWLGVN-GPSYTVDSACSSSLYALEHAYKS 207
K I G G TG S A +++Y LG++ GP+Y+V+ AC++ L AL A +
Sbjct: 22 AGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQ 81
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQ 267
+++G + GG + F D AA SE
Sbjct: 82 VQNGKADIVLAGGSEEFV-------FG--------------DGAAAAVVESEE------H 114
Query: 268 KSKDAKRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHG 327
+ A +V DG + SG R + P ++ ++EAHG
Sbjct: 115 ALRRGAHPQAEIVSTAATFDGASM--VPAVSGEGLARAARKALEGAGLTPSDIDYVEAHG 172
Query: 328 TGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIP 387
TGT +GD E+ + + + GH A+G+ + +++L +E+ IP
Sbjct: 173 TGTPIGDAVELALGLDPDGVR---SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIP 229
Query: 388 P 388
P
Sbjct: 230 P 230
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 88.1 bits (219), Expect = 7e-19
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 13/184 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
FVF G GSQ GMG +L E P T ++ L G D+ ++ + + + N+
Sbjct: 6 FVFPGQGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEGPEEELNLTQNT 62
Query: 523 FVGIAAIQIGLVDILRA--LNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLAS 580
+ + + +L L + PD + GHS+GE A G + E + RG
Sbjct: 63 QPALLLVSLAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLM 122
Query: 581 VE-TEFIRGAMAAV-GLGYKDLRSRC-----PPEIEVACHNSPDSSTISGPEENVKKFVA 633
E G MAAV GL + + C +E+A +NSP ISG +E ++K
Sbjct: 123 QEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEKAAE 182
Query: 634 ELQA 637
L+
Sbjct: 183 ILKE 186
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 88.6 bits (220), Expect = 2e-18
Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 44/297 (14%)
Query: 121 EAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGIT------------GC 168
+A+ DAG++ + + +TG+ G+ S + Q+
Sbjct: 81 QAIADAGLSEEQVSNPRTGLIAGSG-GGSTRN------QVEAADAMRGPRGPKRVGPYAV 133
Query: 169 SRAMLANRVS----YWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLC 224
++AM A+ VS + G +Y++ SAC++S + + +A + I+ G + F GG
Sbjct: 134 TKAM-ASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE- 191
Query: 225 LHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----R 274
L +S F +G LS P+ +++D +G+ + ++ +++ + A +
Sbjct: 192 LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAK 251
Query: 275 VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGD 334
+YA +V DGY + PSG R ++ + VD + +I HGT T VGD
Sbjct: 252 IYAEIVGYGATSDGYD---MVAPSGEGAVRCMQMALA--TVDTP-IDYINTHGTSTPVGD 305
Query: 335 PEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNIN 391
+E+ A+ VF G +P I + KS GHS A+GV +L ME+G I P+ N
Sbjct: 306 VKELGAIREVF--GDKSP-AISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSAN 359
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 88.2 bits (219), Expect = 3e-18
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 27/239 (11%)
Query: 184 NGPSYTVD-------------SACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVS 230
NGP+ V SAC+S A+ A++ I G + A GG +
Sbjct: 148 NGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPI 207
Query: 231 LQFARLG-VLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVV 280
FA++ V+S P G C+ FD+ +G+ E +M ++ + AK + AR++
Sbjct: 208 AGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIM 267
Query: 281 HAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
A DG+ P+G + + P ++ + AH TGT VGD E +A
Sbjct: 268 GASITSDGFHMVA-PDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKA 326
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDI 399
+ N R + + KS +GHS A G +LA+ +G+IPP +N ++ +I
Sbjct: 327 INNALGGHRPA---VYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEI 382
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 83.3 bits (206), Expect = 1e-16
Identities = 84/328 (25%), Positives = 138/328 (42%), Gaps = 55/328 (16%)
Query: 121 EAVIDAGINP-KSLRGSKTGVFIG---ACFSE--------SEKT------WFYEKLQING 162
EA+ DA P + +TGV IG ++ EK +F ++ IN
Sbjct: 103 EALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILIN- 161
Query: 163 FGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCN 222
M A VS G GP++ +AC++ +++ A++ I+ G + GG
Sbjct: 162 ---------MAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTE 212
Query: 223 LCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR-- 274
+ F+R LS P + FD +G+ E ++ L++ + AKR
Sbjct: 213 SSIDALSIAGFSRSRALSTKFNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRG 272
Query: 275 --VYARVVHAKTNCDGYKEQGITYPS----GAL--QQRLLEDFYSECEVDPKNLAWIEAH 326
+YA V + D + IT P GA+ R L+ + + P + ++ AH
Sbjct: 273 AKIYAEVRGYGMSGDAHH---ITQPHEDGRGAVLAMTRALQ----QSGLHPNQVDYVNAH 325
Query: 327 GTGTKVGDPEEVQALENVFCPGRTT-PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGI 385
T T +GD E +A++ VF T+ L S K GH A+G +LA+ +GI
Sbjct: 326 ATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGI 385
Query: 386 IPPNINFKSPRKDIPSFHNGKIQLESRP 413
PP +N + P P F +G + L +
Sbjct: 386 APPTLNLERPD---PIFDDGFVPLTASK 410
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 80.5 bits (199), Expect = 5e-16
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS 240
+G GP +AC++ L+A+ + I+ G C G + P F ++G L+
Sbjct: 133 IGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA 192
Query: 241 PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITY 296
G FD G E I+ L+ ++ A+ ++Y +++ CD Y ++
Sbjct: 193 KTG-AYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYH---MSA 248
Query: 297 PSG-------ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR 349
P A+QQ L + + P+++ +I AHGT T++ D E ++ +F
Sbjct: 249 PEPDGKSAIAAIQQCL-----ARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPHR- 302
Query: 350 TTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
+ + S K GH+ ASG V +LA+ + +PP + + P
Sbjct: 303 ---VAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEP 345
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 80.7 bits (200), Expect = 6e-16
Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 28/238 (11%)
Query: 173 LANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCN-LCLHPYVSL 231
LA+ + +LG++GP+YT+ +ACSSS A + + G C+AA VGG + LC L
Sbjct: 139 LADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCRLT---L 195
Query: 232 Q-FARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAKTNCDGYK 290
F L LSP C+ F +G EA L++ DA ++ + D +
Sbjct: 196 NGFNSLESLSP-QPCRPFSANRDGINIGEAAAFFLLEREDDAA---VALLGVGESSDAHH 251
Query: 291 EQGIT--YPSG-----ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALEN 343
++ +P G A+QQ L ++ + P ++ +I HGT T + D E +A+
Sbjct: 252 ---MSAPHPEGLGAILAMQQAL-----ADAGLAPADIGYINLHGTATPLNDAMESRAVAA 303
Query: 344 VFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPS 401
VF G P S K GH+ A+G LA+ +G+ P N P +P
Sbjct: 304 VF--GDGVPC--SSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPP 357
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 79.7 bits (197), Expect = 1e-15
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 18/226 (7%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS 240
G+ G +TV A +S A+ A + ++ G +A G + L + LG +
Sbjct: 154 FGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMG 213
Query: 241 -------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGY 289
P+ C+ FD+ +G+ EA + L+ ++ A+R YA+++ D
Sbjct: 214 SDRFADEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDAN 273
Query: 290 KEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGR 349
+ PS + R++ + P+++ ++ HGTG+ +GD E+ AL F G
Sbjct: 274 RG---PDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAAL---FASGL 327
Query: 350 TTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
I + KS GH A+G+ + +L M G + P+ N P
Sbjct: 328 AHAW-INATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEP 372
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 75.5 bits (185), Expect = 2e-14
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 15/235 (6%)
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
+ A VS GP +AC++ + A+ A + IR+ + A GG +
Sbjct: 69 LAAGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLA 128
Query: 232 QFARLGVLS------PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA----KRVYARVVH 281
FA LS P+ + FD A +G+ E ++ +++ + A + A +V
Sbjct: 129 GFAAARALSTHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVG 188
Query: 282 AKTNCDGYK-EQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQA 340
T+ D Y G GA R ++ + + P+ + + AH T T VGD E+ A
Sbjct: 189 YGTSADAYHMTSGAEDGDGAY--RAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINA 246
Query: 341 LENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
++++F G + L I S KS GH A+G +LA+ + I+P +N ++P
Sbjct: 247 IKHLF--GESNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENP 299
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 72.4 bits (178), Expect = 4e-13
Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 13/237 (5%)
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQF 233
A+R++ G G ++ +AC+S A++ ++IR G + A + + ++F
Sbjct: 155 ADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRF 214
Query: 234 ARLGVLS-----PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAKTNCDG 288
+ L LS P+ K F + +G+ +E + L+ + A A+++ C G
Sbjct: 215 SLLSALSTQNDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGC-G 273
Query: 289 YKEQGI----TYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENV 344
K + P G+ + ++ + P+ + +I AHGT T D E L V
Sbjct: 274 EKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAV 333
Query: 345 FCPG-RTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIP 400
F G R + + S KS IGH+ A+G +L ++ G +PP IN+ +P IP
Sbjct: 334 F--GERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIP 388
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine.
Length = 399
Score = 61.6 bits (150), Expect = 6e-10
Identities = 77/325 (23%), Positives = 113/325 (34%), Gaps = 59/325 (18%)
Query: 109 DPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFI-----GACFSESEK------------ 151
D M R+ L A+ DAG++P +L GV G F + E
Sbjct: 69 DRMTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVS 128
Query: 152 -----TWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYK 206
WFY A+ ++S G+ GPS V + + L AL A +
Sbjct: 129 AYQSFAWFY---------------AVNTGQISIRHGMRGPSGVVVAEQAGGLDALAQARR 173
Query: 207 SIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCRSEAVC 262
+R G GG + L P+ + G LS P FD AA GY E
Sbjct: 174 LVRRGTP-LVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAGYVPGEGGA 232
Query: 263 IMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPK 318
I+ L+ + A+ RVY + D G R + ++ + P+
Sbjct: 233 ILVLEDAAAARERGARVYGEIAGYAATFDPPPGSG----RPPGLARAIRLALADAGLTPE 288
Query: 319 NLAWIEAHGTGTKVGDPEEVQALENVFCPGR---TTPLLIGSVKSNIGHSEPASGVCSVT 375
++ + A G D E AL VF P T P K+ G V
Sbjct: 289 DVDVVFADAAGVPELDRAEAAALAAVFGPRGVPVTAP------KTMTGRLYAGGAPLDVA 342
Query: 376 KVILAMENGIIPPNINFKSPRKDIP 400
+LA+ +G+IPP +N
Sbjct: 343 TALLALRDGVIPPTVNVTDVPPAYG 367
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 60.9 bits (148), Expect = 7e-10
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
+VF G GSQ GMG +L E PI ++ L G D+K++ + + + +
Sbjct: 5 YVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEAL---GYDLKKLCQEGPAEELNKTQYT 61
Query: 523 FVGIAAIQIGLVDILR-ALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRG---- 577
+ + L L+ + PD GHS+GE A G E + RG
Sbjct: 62 QPALYVVSAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQ 121
Query: 578 LASVETEFIRGAMAAV-GLGYKDLRSRCP----PEIEVACHNSPDSSTISGPEENVKK 630
A E GAMAAV GL + L C ++++A NSP ISG ++ V+
Sbjct: 122 EAVPEGG---GAMAAVIGLDEEQLAQACEEATENDVDLANFNSPGQVVISGTKDGVEA 176
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 55.4 bits (134), Expect = 4e-08
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 14/179 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDN-ILNS 522
+F G GSQ GM EL + P AA + + VL G+D + + D +
Sbjct: 3 LLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPREL--DDAEALASTRSAQL 57
Query: 523 FVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGL---A 579
+ A + L AL P + G+SVGE A G T + + R
Sbjct: 58 CILAA--GVAAWRALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQ 115
Query: 580 SVETEFIRGAMAAVGLGYKDLRSRCPP-EIEVACHNSPDSSTISGPEENVKKFVAELQA 637
+V + G +A +GL + + + +A N+PD I+G ++ +A
Sbjct: 116 AVPGGY--GMLAVLGLDLAAVEALIAKHGVYLAIINAPDQVVIAGSRAALRAVAELARA 172
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 42.6 bits (101), Expect = 7e-04
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 24/108 (22%)
Query: 114 IILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGITGCSRAML 173
+ E A+ DAG+ P + V +G ++
Sbjct: 19 LAAEAARAALDDAGLEPADI----DAVVVGNAAGGR-------------------FQSFP 55
Query: 174 ANRVSYWLGVNG-PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
++ +LG+ G P+ V++A +S A+ A +I G + V G
Sbjct: 56 GALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVG 103
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 40.7 bits (96), Expect = 0.003
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 120 YEAVIDAGI--NPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGITGCSRAMLANRV 177
A+IDAG+ P + + I C ++ + Q A+ A
Sbjct: 31 GAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQA----------ALAAG-- 78
Query: 178 SYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
L + P+ TV+ AC+S L A+ A ++I G + GG
Sbjct: 79 ---LPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGG 118
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 39.9 bits (94), Expect = 0.004
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 174 ANRVSYWLGVNG-PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLC 224
A V LG+ G P++ + +ACS LYAL A IR G V G
Sbjct: 92 ACLVQARLGLGGAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETL 143
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 40.2 bits (95), Expect = 0.004
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
L + P+ TV+ C S L A+ A +SI G + GG
Sbjct: 71 LPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGG 110
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 39.9 bits (94), Expect = 0.005
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC 221
L + P+YTV+ C+S L A+ A + IR G + GG
Sbjct: 70 LPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGV 110
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 36.4 bits (85), Expect = 0.064
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 114 IILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGITGCSRAML 173
+ +E EA+ DAGI+ K + G F E +
Sbjct: 25 LAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQE---------------------HI 63
Query: 174 ANRVSYWLGVNG-PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A ++ + G+ P+ V++AC+S AL AY ++ G + G
Sbjct: 64 AALIADYAGLAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAG 111
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 35.2 bits (81), Expect = 0.12
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLG 237
P+ T++ C S L AL A ++IR G GG N+ L PYV L AR G
Sbjct: 80 PAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYV-LPGARTG 131
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family. This family
are hydrolase enzymes.
Length = 173
Score = 33.5 bits (77), Expect = 0.20
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 532 GLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASV 581
L +ILR L I D ++ L D C V T A+ RG V
Sbjct: 101 DLDEILRELGI--DTLV------LAGVATDVC--VLSTARDAFDRGYEVV 140
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 33.5 bits (77), Expect = 0.53
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
P++TV C+S + AL+ A +I G + GG
Sbjct: 81 PAWTVQRNCASGMQALDSAAANIALGRADLVLAGG 115
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 32.6 bits (75), Expect = 0.62
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGV 238
P+ T++ C S L A+ A ++IR G + GG + L +R+G
Sbjct: 78 PAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSNAPYVLPASRVGA 130
>gnl|CDD|236037 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 372
Score = 32.9 bits (76), Expect = 0.72
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
LG+ G ++ ++ ACSS+ + ++ A +IR G V
Sbjct: 142 LGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLV 179
>gnl|CDD|192556 pfam10363, DUF2435, Protein of unknown function (DUF2435). This is
a conserved region of approximately 400 residues which
is found only in eukaryotes. It is associated with HEAT
domains pfam02985 in all members. The function is not
known.
Length = 93
Score = 30.2 bits (69), Expect = 0.89
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 748 HGLL---QAILRRSLP----KTVTNVSLTQRENANSVLYL-----LQALGKLYESGVHPH 795
HGL + + ++S P V + L+Q ++ +S +YL L AL + V P
Sbjct: 23 HGLYLLRRLVEKKSEPVIDLPKVLTLFLSQLKDEDSFVYLNAIKGLAALAERDPDTVLPT 82
Query: 796 LANLYPKID 804
L Y
Sbjct: 83 LLEEYADKS 91
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 32.6 bits (74), Expect = 0.92
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 139 GVFIGACFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSL 198
G F+G FS + G +G S A+L P+ V+ AC+S
Sbjct: 78 GNFLGELFSSQGHL---GPAAVGSLGQSGASNALL----------YKPAMRVEGACASGG 124
Query: 199 YALEHAYKSIRDGHCNAAFVGG 220
A++ A++++ G + A V G
Sbjct: 125 LAVQSAWEALLAGTSDIALVVG 146
>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
Length = 343
Score = 32.4 bits (74), Expect = 0.93
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
F+F G G+Q GMG E E+P A +K +L G D+ + + + D+ + S
Sbjct: 42 FLFPGQGAQAVGMGKEAAEVPAAKALFDKASEIL---GYDLLDVCVNGPKEKLDSTVVSQ 98
Query: 524 VGIAAIQIGLVDILRALNITPDHI------IGHSVGELGCAYADGCFTVEQTILAAYYRG 577
I + V+ LRA + I G S+GE G + E + RG
Sbjct: 99 PAIYVASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRG 158
Query: 578 LA 579
A
Sbjct: 159 EA 160
>gnl|CDD|206227 pfam14057, GGGtGRT, GGGtGRT protein. This family of proteins is
functionally uncharacterized. This family of proteins is
found in bacteria and archaea. Proteins in this family
are approximately 330 amino acids in length and contain
many highly conserved residues including a GGGtGRT
motif.
Length = 328
Score = 32.4 bits (74), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 488 ATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQI 531
A++E+ V KGVD I+ +T P F+N ++ AAI I
Sbjct: 22 ASLEEANEVCLSKGVDPYAIVRETQPIAFENACWAYTLGAAIAI 65
>gnl|CDD|236675 PRK10369, PRK10369, heme lyase subunit NrfE; Provisional.
Length = 571
Score = 32.5 bits (74), Expect = 1.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 795 HLANLYPKIDFPVSRGTPMISPLVRWEHSEDWYVTTYRMQEK 836
+ L P+ F +R M+ P +RW DWY M EK
Sbjct: 491 RIGELTPERRFYEARRQQMMEPGIRWNGIHDWYAV---MGEK 529
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 31.6 bits (72), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 525 GIAAIQIGLVDILRALNITPDHIIGHSVGEL 555
IA + ++ +L AL I H +GH++G L
Sbjct: 61 SIAHMADDVLQLLDALGIERFHFVGHALGGL 91
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 31.9 bits (73), Expect = 1.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 375 TKVILAMENGIIPPNI--NFKSPRKDIPSFHNGKIQLESRPLDAEYVRLFHEI 425
K IL + + +I P + FK P P KI + + P D++YV +FH +
Sbjct: 329 DKEILGIRDKVIHPKVASRFKIPLTQQP-----KIHIYTAPWDSDYVFIFHCV 376
>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase;
Provisional.
Length = 314
Score = 31.4 bits (72), Expect = 2.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 620 TISGPEENVKKFVAELQADNIFART-INVANTEKHA 654
T+SG E + ++A L+AD FA ++ + HA
Sbjct: 48 TVSGTIEQTEAYMAWLKADPRFADIRFKISEDDGHA 83
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 30.8 bits (70), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 303 QRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF 345
+ E +E E + + L ++A G G+ VG P E A+ENV
Sbjct: 202 EPEKETVAAEKEFEGRRLYIVKAEGPGSTVGRPGE--AVENVV 242
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 30.5 bits (69), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 310 YSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF 345
Y+E E++ + L ++A G G+ VG E A+E V
Sbjct: 221 YAEKELEGRKLYIVKAEGPGSTVGRLGE--AVEEVV 254
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to
Z1214 protein of Escherichia coli. Patatin-like
phospholipase similar to Z1214 protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins and some representatives from
eukaryotes and archaea. The patatin protein accounts for
up to 40% of the total soluble protein in potato tubers.
Patatin is a storage protein, but it also has the
enzymatic activity of a lipid acyl hydrolase, catalyzing
the cleavage of fatty acids from membrane lipids.
Members of this family have also been found in
vertebrates.
Length = 215
Score = 30.0 bits (68), Expect = 3.9
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 528 AIQIGLVDILRALNITPDHIIGHSVGEL-GCAYADGCFTVEQTILAAYYRGLASVETEFI 586
A Q G++ L I PD I G S+G + G A G + L +R L S E F+
Sbjct: 11 AYQAGVLKALAEAGIEPDIISGTSIGAINGALIAGGDPEAVER-LEKLWREL-SREDVFL 68
Query: 587 RGAMAAVGLGYKDLRSRCPPEIEV 610
RG + + LR +
Sbjct: 69 RGLLDRALD-FDTLRLLAILFAGL 91
>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely
expressed in pathogenic bacteria, that protect cells
against toxicity from reactive oxygen species by
reducing and detoxifying hydroperoxides. The protein was
named BCP based on its electrophoretic mobility before
its function was known. BCP shows substrate selectivity
toward fatty acid hydroperoxides rather than hydrogen
peroxide or alkyl hydroperoxides. BCP contains the
peroxidatic cysteine but appears not to possess a
resolving cysteine (some sequences, not all, contain a
second cysteine but its role is still unknown). Unlike
other PRXs, BCP exists as a monomer. The plant homolog
of BCP is PRX Q, which is expressed only in leaves and
is cellularly localized in the chloroplasts and the
guard cells of stomata. Also included in this subfamily
is the fungal nuclear protein, Dot5p (for disrupter of
telomere silencing protein 5), which functions as an
alkyl-hydroperoxide reductase during post-diauxic
growth.
Length = 140
Score = 29.4 bits (67), Expect = 4.0
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 40 IAGVFPDSTD-VRDFGEKLNNKVDLISDDDRR-------WKLGKEHPEIPQRT 84
+ GV PDS + F EK L+SD D + W K+ +R+
Sbjct: 60 VIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERS 112
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 30.5 bits (69), Expect = 4.2
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 27/108 (25%)
Query: 113 RIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGITGCSRAM 172
++EKT GI P+ + I C + + W Y G +
Sbjct: 41 NRLIEKT-------GIKPEEI-----DDIITGCALQVGENWLY-----------GGRHPI 77
Query: 173 LANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
R+ Y N P+ VD C+SSL + I G + GG
Sbjct: 78 FLARLPY----NIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGG 121
>gnl|CDD|222462 pfam13934, ELYS, Nuclear pore complex assembly. ELYS (embryonic
large molecule derived from yolk sac) is conserved from
fungi such Aspergillus nidulans and Schizosaccharomyces
pombe to human. It is important for the assembly of the
nuclear pore complex.
Length = 225
Score = 29.5 bits (67), Expect = 5.8
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 108 MDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQ 159
D + R +LE+ E V++A + I SE E+ + L+
Sbjct: 166 SDELRRPLLEQLVEHVLEAIPRAGRAK-----ELISLPLSEEEEELLEDLLR 212
>gnl|CDD|129451 TIGR00353, nrfE, c-type cytochrome biogenesis protein CcmF. The
product of this gene is required for the biogenesis of
C-type cytochromes. This gene is thought to have eleven
transmembrane helices. Disruption of this gene in
Paracoccus denitrificans, encoding a putative
transporter, results in formation of an unstable
apocytochrome c and deficiency in siderophore production
[Energy metabolism, Electron transport].
Length = 576
Score = 30.2 bits (68), Expect = 6.2
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 797 ANLYPKIDFPVSRGTPMISPLVRWEHSEDWYVTTYRMQEKLKSGERTV 844
A L P+ F R M + + D Y M EKL G
Sbjct: 500 AELTPERRFYEVRRMQMTEAAIDGGGTRDLYAV---MGEKLGPGRWAF 544
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 29.8 bits (68), Expect = 6.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 174 ANRVSYWLGV-NGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
A V LG N ++ +++ACS LY L A IR G V
Sbjct: 90 ACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLV 135
>gnl|CDD|132725 cd06528, RNAP_A'', A'' subunit of Archaeal RNA Polymerase (RNAP).
Archaeal RNA polymerase (RNAP), like bacterial RNAP, is
a large multi-subunit complex responsible for the
synthesis of all RNAs in the cell. The relative
positioning of the RNAP core is highly conserved between
archaeal RNAP and the three classes of eukaryotic RNAPs.
In archaea, the largest subunit is split into two
polypeptides, A' and A'', which are encoded by separate
genes in an operon. Sequence alignments reveal that the
archaeal A'' subunit corresponds to the C-terminal
one-third of the RNAPII largest subunit (Rpb1). In
subunit A'', several loops in the jaw domain are
shorter. The RNAPII Rpb1 interacts with the
second-largest subunit (Rpb2) to form the DNA entry and
RNA exit channels in addition to the catalytic center of
RNA synthesis.
Length = 363
Score = 29.5 bits (67), Expect = 7.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 493 LQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAA 528
L+AVLK +GVD R T+ N + +L GI A
Sbjct: 229 LKAVLKVEGVDPTRTTTN-NIHEIEEVL----GIEA 259
>gnl|CDD|235577 PRK05718, PRK05718,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 212
Score = 29.1 bits (66), Expect = 8.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 327 GTGTKVGDPEEVQALEN-----VFCPGRTTPLLIGSVKSNIGHSEPA-SGVCSVTKVILA 380
G GT V +PE++ + PG T PLL + + I P GV + ++++L
Sbjct: 70 GAGT-VLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPI----PLIPGVSTPSELMLG 124
Query: 381 MENGI 385
ME G+
Sbjct: 125 MELGL 129
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 29.6 bits (67), Expect = 8.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 181 LGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
+ V+ +Y+V AC++S A+ + +SI G + GG
Sbjct: 78 MNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGG 117
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 29.5 bits (66), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
+ TV+ C SS+ AL A ++I G + VGG
Sbjct: 81 AAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGG 115
>gnl|CDD|183656 PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed.
Length = 222
Score = 28.9 bits (65), Expect = 8.8
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 519 ILNSFVGIAAIQIGLVDILRA-------LNITPDHIIGHSVGELGCAYADGCFTVEQTIL 571
I F G+ AI+ G D L LNI + +IG + +D IL
Sbjct: 113 IYTVFQGLLAIEAG-ADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSD------SKIL 165
Query: 572 AAYYRGLASVETEFIRGAMAA 592
AA ++ +A V F GA A
Sbjct: 166 AASFKNVAQVNKAFALGAQAV 186
>gnl|CDD|140258 PTZ00231, PTZ00231, variable surface protein Vir17; Provisional.
Length = 385
Score = 29.5 bits (66), Expect = 8.8
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 411 SRPLDAEYVRLFHEIHSD---DIAGHMYRGYTILSANSDKKIRSSTHY 455
L +Y+R +E ++ +I + GYT L+A + + Y
Sbjct: 26 CYELTLDYLRSINETDNEALKNIGCSLESGYTFLTARDGETLTDLCKY 73
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase
domain containing protein 6, protein 7, and fungal NTE1.
Patatin-like phospholipase domain containing protein 6
(PNPLA6) and protein 7 (PNPLA7) are included in this
family. PNPLA6 is commonly known as Neuropathy Target
Esterase (NTE). NTE has at least two functional domains:
the N-terminal domain putatively regulatory domain and
the C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. PNPLA7 is an insulin-regulated
phospholipase that is homologus to Neuropathy Target
Esterase (NTE or PNPLA6) and is also known as
NTE-related esterase (NRE). Human NRE is predominantly
expressed in prostate, white adipose, and pancreatic
tissue. NRE hydrolyzes sn-1 esters in
lysophosphatidylcholine and lysophosphatidic acid, but
shows no lipase activity with substrates like
triacylglycerols (TG), cholesteryl esters, retinyl
esters (RE), phosphatidylcholine (PC), or
monoacylglycerol (MG). This family includes subfamily of
PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.
Length = 175
Score = 28.7 bits (65), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 525 GIAAIQIGLVDILRAL---NITPDHIIGHSVGEL-GCAYADG 562
G+A IG +L+AL I D + G S G + G YA G
Sbjct: 12 GLA--HIG---VLKALEEAGIPIDIVSGTSAGAIVGALYAAG 48
>gnl|CDD|233081 TIGR00667, aat, leucyl/phenylalanyl-tRNA--protein transferase. The
N-terminal residue controls the biological half-life of
many proteins via the N-end rule pathway. This enzyme
transfers a Leu or Phe to the amino end of certain
proteins to enable degradation [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 185
Score = 28.7 bits (64), Expect = 9.2
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 615 SPDSSTISGPEE-NVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDI 673
SPD + PE ++ + + + + ++N A + ++ C + RP W++D++
Sbjct: 29 SPDPRAVLWPESLHIARSMKRFLKRSPYRVSVNYAFGQV---IEGCASDRPEGTWISDEL 85
Query: 674 R 674
Sbjct: 86 V 86
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 28.5 bits (64), Expect = 9.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 533 LVDILRALNITPDHIIGHSVGELGCAYA 560
L +L AL + P ++GHS LG A A
Sbjct: 55 LAALLDALGLGPVVLVGHS---LGGAVA 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,453,945
Number of extensions: 4509472
Number of successful extensions: 4031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3923
Number of HSP's successfully gapped: 87
Length of query: 883
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 778
Effective length of database: 6,280,432
Effective search space: 4886176096
Effective search space used: 4886176096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.7 bits)