RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1120
(883 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 572 bits (1476), Expect = 0.0
Identities = 191/384 (49%), Positives = 277/384 (72%), Gaps = 2/384 (0%)
Query: 30 APGDEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYE 89
+ G+E+ I G++G P+S ++++F + L VD+++DDDRRWK +P+R+GKL +
Sbjct: 1 STGEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKA--GLYGLPRRSGKLKD 58
Query: 90 VNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSES 149
+++FDA+FFGVH KQAHTMDP R++LE TYEA++D GINP SLRG+ TGV++G SE+
Sbjct: 59 LSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSET 118
Query: 150 EKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIR 209
+ + + G+ + GC RAM+ANR+S++ GPS +D+ACSSSL AL++AY++I
Sbjct: 119 SEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIH 178
Query: 210 DGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKS 269
G C AA VGG N+ L P S+QF RLG+LSP+G CK+FD A NGYCRSE V + L K
Sbjct: 179 SGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKK 238
Query: 270 KDAKRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTG 329
A+RVYA +++A TN DG+KEQG+T+PSG +Q++L+ Y V P++ +IEAHGTG
Sbjct: 239 SLARRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTG 298
Query: 330 TKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPN 389
TKVGDP+E+ + C R PLLIGS KSN+GH EPASG+ ++ KV+L++E+G+ PN
Sbjct: 299 TKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPN 358
Query: 390 INFKSPRKDIPSFHNGKIQLESRP 413
++F SP +IP+ +G++Q+ +P
Sbjct: 359 LHFHSPNPEIPALLDGRLQVVDQP 382
Score = 465 bits (1199), Expect = e-150
Identities = 179/469 (38%), Positives = 274/469 (58%), Gaps = 19/469 (4%)
Query: 408 QLESRPLDAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFS 467
Q D ++ + ++I + +RGY +L ++ P RPLWF+ S
Sbjct: 442 QGLRHSQDLAFLSMLNDIAAVPATAMPFRGYAVLG--GERGGPEVQQVPAGERPLWFICS 499
Query: 468 GMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIA 527
GMG+QW GMG LM + F +I + +KP G+ V +++ T+ FD+I++SFV +
Sbjct: 500 GMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLT 559
Query: 528 AIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIR 587
AIQIGL+D+L + + PD I+GHS+GE+ C YADGC + E+ +LAAY+RG E
Sbjct: 560 AIQIGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPP 619
Query: 588 GAMAAVGLGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINV 647
GAMAAVGL +++ + RCPP + ACHNS D+ TISGP+ V +FV +L+ + +FA+ +
Sbjct: 620 GAMAAVGLSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRT 679
Query: 648 ANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWT 707
H+ + I + + V +PKPRS +WLSTS EA W
Sbjct: 680 GGMAFHSY-------------FMEAIAPPLLQ-ELKKVIREPKPRSARWLSTSIPEAQWH 725
Query: 708 THLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVS 767
+ LA+ SSAEY+ NNL+SPVLF+E H+ ++A+ LEIAPH LLQA+L+R L + T +
Sbjct: 726 SSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIP 785
Query: 768 LTQRENANSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTPMISPLVRWEHSEDWY 827
L ++++ +++ + L +G+L+ SG+ + L+P ++FP RGTP+ISPL++W+HS W
Sbjct: 786 LMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWD 845
Query: 828 VTTYRMQEKLKSGERTVVV---SLKDDEMEFVSGHMIDGRNLFPATGYL 873
V + + + ++ H +DGR LFPATGYL
Sbjct: 846 VPAAEDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGRVLFPATGYL 894
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 594 bits (1533), Expect = 0.0
Identities = 190/382 (49%), Positives = 274/382 (71%), Gaps = 2/382 (0%)
Query: 33 DEICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNK 92
+E+ I G++G P+S ++ +F L VD+++ DDRRWK +P+R GKL ++++
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKA--GLYGLPRRMGKLKDLSR 59
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKT 152
FDA+FFGVH KQA+TMDP R++LE TYEA++D GINP SLRG+ TGV++G S++ +
Sbjct: 60 FDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEA 119
Query: 153 WFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGH 212
+ + G+ + GC RAM+ANR+S++ GPS T+D+ACSSSL AL+ AY++IR G
Sbjct: 120 LSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGE 179
Query: 213 CNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDA 272
C+AA VGG N+ L P SLQF +LG+LS DG C+SFD GYCR+EAV + L K A
Sbjct: 180 CSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLA 239
Query: 273 KRVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKV 332
+RVYA +++A TN DG KEQG+T+PSG +Q++L+ Y+ DP++L +IEAHGTGTKV
Sbjct: 240 RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKV 299
Query: 333 GDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
GDP+E+ + N C R PLLIGS KSN+GH EPASGV ++ KV+L++E+G+ PN+++
Sbjct: 300 GDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHY 359
Query: 393 KSPRKDIPSFHNGKIQLESRPL 414
+P +IP+ +G++Q+ RPL
Sbjct: 360 HTPNPEIPALQDGRLQVVDRPL 381
Score = 480 bits (1238), Expect = e-147
Identities = 178/469 (37%), Positives = 271/469 (57%), Gaps = 19/469 (4%)
Query: 408 QLESRPLDAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSSTHYPGDTRPLWFVFS 467
Q D +V + +EI + +RGY + + + PG RP+WF+ S
Sbjct: 440 QGLRHSRDLAFVGMLNEIAAVSPVAMPFRGYAV--LGGEAGSQEVQQVPGSKRPVWFICS 497
Query: 468 GMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIA 527
GMG+QW GMG LM + F +I + LKP G+ V ++ T+ + D+I++SFV +
Sbjct: 498 GMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLT 557
Query: 528 AIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIR 587
+IQI L+D+L +L + PD IIGHS+GE+ C YADGC T E+ +L++Y+RG E +
Sbjct: 558 SIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWRGYCIKEANVLP 617
Query: 588 GAMAAVGLGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTINV 647
GAMAAVGL +++ + RCPP I ACHNS D+ TISGP+ + +F+ +L+ +++F + +
Sbjct: 618 GAMAAVGLSWEECKQRCPPGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRT 677
Query: 648 ANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWT 707
H+ + I + R V PKPRS +WLSTS EA W
Sbjct: 678 GGIAFHSY-------------FMESIAPTL-LRQLRKVILDPKPRSKRWLSTSIPEAQWQ 723
Query: 708 THLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLLQAILRRSLPKTVTNVS 767
LA+ SAEY NNL+SPVLF+E +H+ +A+ +EIAPH LLQA+L+RSL + T +
Sbjct: 724 GSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIP 783
Query: 768 LTQRENANSVLYLLQALGKLYESGVHPHLANLYPKIDFPVSRGTPMISPLVRWEHSEDWY 827
L ++++ +++ + L +G+L+ +GV + L+P ++FP RGTP+ISP ++W+HS+ W
Sbjct: 784 LMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWD 843
Query: 828 VTTYRMQEKLKSGERTVVVS---LKDDEMEFVSGHMIDGRNLFPATGYL 873
V + S V + ++ H IDGR LFP TGYL
Sbjct: 844 VPSAADFPSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYL 892
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 328 bits (842), Expect = 1e-98
Identities = 152/410 (37%), Positives = 213/410 (51%), Gaps = 23/410 (5%)
Query: 3 PAPNSPAPAKL------TSKELALKAGRRLARPAPGDE-ICITGIAGVFP-DSTDVRDFG 54
N KL T EL R E I I G+A FP D F
Sbjct: 2 SGDNGMTEEKLRRYLKRTVTELDSVTARLREVEHRAGEPIAIVGMACRFPGDVDSPESFW 61
Query: 55 EKLNNKVDLISD--DDRRWKLGKEHPEIPQRTGK-LYEVNKFDAAFFGVHFKQAHTMDPM 111
E ++ D I++ DR W P+ R G L FDA FFG+ ++A MDP
Sbjct: 62 EFVSGGGDAIAEAPADRGW-----EPDPDARLGGMLAAAGDFDAGFFGISPREALAMDPQ 116
Query: 112 CRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWFYEKLQINGFGITGCSRA 171
RI+LE ++EA+ AG +P SLRGS TGVF G + ++ G+ TG + +
Sbjct: 117 QRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASS 176
Query: 172 MLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSL 231
+ + RV+Y LG+ GP+ TVD+ACSS L AL A +S+R C A GG + P
Sbjct: 177 VASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFT 236
Query: 232 QFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCD 287
+F G L+ DGRCK F +AA+G+ +E ++ LQ+ A+R V A + + N D
Sbjct: 237 EFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQD 296
Query: 288 GYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCP 347
G G+T PSG QQR++ V ++ ++EAHGTGT++GDP EV AL + +
Sbjct: 297 G-ASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGA 355
Query: 348 GRTT--PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
R PL IGSVKSNIGH++ A+GV V K +LA+ +G +P ++F P
Sbjct: 356 ERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEP 405
Score = 146 bits (371), Expect = 3e-36
Identities = 79/363 (21%), Positives = 142/363 (39%), Gaps = 62/363 (17%)
Query: 464 FVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKPK-GVDVKRIITD---------TN 512
VF G G+QW GM +L+ +FA +I + L P + +++
Sbjct: 555 MVFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARPLDRVDVVQ 614
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQ--TI 570
P +F A+ + L + R+ + P ++GHS GE+ A+ G T+E +
Sbjct: 615 PALF-----------AVMVSLAALWRSHGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKL 663
Query: 571 LAAYYRGLASVETEFIRGAMAAVGLGYKDLRSR---CPPEIEVACHNSPDSSTISGPEEN 627
+A R L + +G MA+ GLG + R + +A N P S ++G
Sbjct: 664 VAVRSRVLRRLGG---QGGMASFGLGTEQAAERIGRFAGALSIASVNGPRSVVVAGESGP 720
Query: 628 VKKFVAELQADNIFARTINV--ANTEKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHV 685
+ + +AE +A+ AR I V A+ H+P + +R + + A +
Sbjct: 721 LDELIAECEAEAHKARRIPVDYAS---HSP-------------QVESLREEL-LTELAGI 763
Query: 686 KFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAIT--L 743
ST+ + T + Y NL V F++ +R + + +
Sbjct: 764 SPVS-AD-VALYSTTTGQPIDTATM----DTAYWYANLREQVRFQDATRQLAEAGFDAFV 817
Query: 744 EIAPHGLLQAILRRSLPKTVTN-----VSLTQRENANSVLYLLQALGKLYESGVHPHLAN 798
E++PH +L + +L + V T R + + ALG+ Y GV +
Sbjct: 818 EVSPHPVLTVGIEATLDSALPADAGACVVGTLRRDRGGLADFHTALGEAYAQGVEVDWSP 877
Query: 799 LYP 801
+
Sbjct: 878 AFA 880
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 323 bits (831), Expect = 5e-97
Identities = 145/406 (35%), Positives = 221/406 (54%), Gaps = 33/406 (8%)
Query: 33 DE-ICITGIAGVFP-DSTDVRDFGEKLNNKVDLISD--DDRRWKLGKEHPEIPQRTGK-- 86
+ I I +A P + E L + +S DR W L + H P G
Sbjct: 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSY 64
Query: 87 ------LYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGV 140
L + FDA FFGV ++A MDP R++LE ++E V +AGI+P SLRG+ TGV
Sbjct: 65 VDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGV 124
Query: 141 FIGACFSESEKTWFYEKL-----QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACS 195
F+G Y + + G+ +TG + A+ + R+SY +G+ GPS +VD+ACS
Sbjct: 125 FLGVAKFG------YGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACS 178
Query: 196 SSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGY 255
SSL AL A +S+R G + A VGG + P V + F+R L+ DGR K+F A+G+
Sbjct: 179 SSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGF 238
Query: 256 CRSEAVCIMYLQKSKDAKR----VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYS 311
SE V ++ L++ +A+R V A V + N DG G++ PSG Q+R++
Sbjct: 239 GFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDG-ASNGLSAPSGPAQRRVIRQALE 297
Query: 312 ECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTT--PLLIGSVKSNIGHSEPAS 369
C ++P ++ +EAHGTGT +GDP E AL + + R PL +GSVKSNIGH++ A+
Sbjct: 298 SCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAA 357
Query: 370 GVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQL--ESRP 413
GV + KV+LA+ NG +P ++ + P + + +G + L ++P
Sbjct: 358 GVTGLLKVVLALRNGELPATLHVEEPTPHVD-WSSGGVALLAGNQP 402
Score = 146 bits (371), Expect = 3e-36
Identities = 85/373 (22%), Positives = 144/373 (38%), Gaps = 64/373 (17%)
Query: 456 PGDTRPLWFVFSGMGSQWDGMGTELMEI-PIFAATIEKLQAVLKPKG----VDVKRIITD 510
D R + F+F G GSQW GMG EL+ P+FA I + P DV R
Sbjct: 528 EVDGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPG 587
Query: 511 ---------TNPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYAD 561
P +F A+ + L ++ R+ + P ++GHS GE+ A+
Sbjct: 588 APGLDRVDVVQPVLF-----------AVMVSLAELWRSYGVEPAAVVGHSQGEIAAAHVA 636
Query: 562 GCFTVEQ--TILAAYYRGLASVETEFIRGAMAAVGLGYKDLRSR---CPPEIEVACHNSP 616
G T+E ++ R + S+ G MAAV LG +R R + VA N P
Sbjct: 637 GALTLEDAAKLVVGRSRLMRSLSG---EGGMAAVALGEAAVRERLRPWQDRLSVAAVNGP 693
Query: 617 DSSTISGPEENVKKFVAELQADNIFARTINV--ANTEKHAPLKQCRAQRPPAPWLTDDIR 674
S +SG ++ F + A+ I R I+V A+ H+P + +R
Sbjct: 694 RSVVVSGEPGALRAFSEDCAAEGIRVRDIDVDYAS---HSP-------------QIERVR 737
Query: 675 ACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSR 734
+ + +P R + ST + + T L A Y NL V F +
Sbjct: 738 EEL-LETTGDIAPRP-AR-VTFHSTVESRSMDGTEL----DARYWYRNLRETVRFADAVT 790
Query: 735 HIQKNAIT--LEIAPHGLLQAILRRSLPKTVTNVSL----TQRENANSVLYLLQALGKLY 788
+ ++ +E++PH ++ + ++ + + + + L+++ +
Sbjct: 791 RLAESGYDAFIEVSPHPVVVQAVEEAVEEADGAEDAVVVGSLHRDGGDLSAFLRSMATAH 850
Query: 789 ESGVHPHLANLYP 801
SGV P
Sbjct: 851 VSGVDIRWDVALP 863
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 136 bits (343), Expect = 1e-32
Identities = 60/415 (14%), Positives = 114/415 (27%), Gaps = 88/415 (21%)
Query: 45 PDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHP-----EIPQRTGKLYEVNKFDAAFFG 99
D D+ + E V L+ +IP ++A +G
Sbjct: 950 GDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIP---------TGWNAKTYG 1000
Query: 100 VHFKQAHTMDPMCRIILEKTYEAVIDAGINP-----KSLRGSKTGVFIGACFS-----ES 149
+ +DP+ +L EA I +GI K + S+ G G+
Sbjct: 1001 ISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRG 1060
Query: 150 EKTWFYEK-------LQ---INGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLY 199
++ LQ IN M A + +GP T AC++S+
Sbjct: 1061 MFKDRFKDEPVQNDILQESFIN---------TMSAWVNMLLISSSGPIKTPVGACATSVE 1111
Query: 200 ALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----------PDGRCKSF 248
+++ ++I G VGG + S +F + S P +
Sbjct: 1112 SVDIGVETILSGKARICIVGGYDDFQEE-GSFEFGNMKATSNTLEEFEHGRTPAEMSRPA 1170
Query: 249 DEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS------ 298
NG+ ++ I + ++ A +Y V A T D G + P+
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKI---GRSVPAPGKGIL 1227
Query: 299 GALQQRLLEDFYSECEVD-------------------PKNLAWIEAHGTGTKVGDPEEVQ 339
++ Y+ ++ L ++ D E
Sbjct: 1228 TTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFL 1287
Query: 340 ALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKS 394
+ + + G+ G+ ++ S
Sbjct: 1288 LERTRE-IHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1341
Score = 92.6 bits (230), Expect = 3e-19
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 17/197 (8%)
Query: 239 LSPDGRCKSFDEAANGYCRSEAVCIMYLQ------KSKDAKRVYA-RVVH-----AKTNC 286
L+ R + + L+ S+D R
Sbjct: 1244 LNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLR 1303
Query: 287 DGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF- 345
++ G + + L + + +L HGT TK D E + +
Sbjct: 1304 AAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMK 1363
Query: 346 CPGRTT--PLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFH 403
GR+ P++ K GH + A+G + + + +GIIP N N + K + F
Sbjct: 1364 HLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFE 1423
Query: 404 NGKIQLESRPLDAEYVR 420
+ S+ L + VR
Sbjct: 1424 Y--VLYPSKTLKTDGVR 1438
Score = 32.2 bits (73), Expect = 0.90
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 22/132 (16%)
Query: 581 VETEFIRGAMAA--VGLGYKDLRSRCPPEIEVACHNSPDSSTISG---PEENVKKFVAEL 635
V T F + MA +GL PE+ C SP + ++G +K+F A+L
Sbjct: 694 VRT-FSQKEMAFNLLGL--------LTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKL 744
Query: 636 QADNIFARTINVANT-EKHAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRST 694
+ + + + A + E K A + +I+ RA+++ P
Sbjct: 745 RKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQP------RANIQLDF-PELK 797
Query: 695 KWLSTSNTEANW 706
+
Sbjct: 798 PYKQVKQIAPAE 809
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 127 bits (323), Expect = 9e-32
Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 26/324 (8%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINP-KSLRGSKTGVFIGA--- 144
+ F K+ +M + + + A+ DAG +S+ + GV G+
Sbjct: 56 PLPGFAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSG 114
Query: 145 --CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
+ T + A VS + + G SAC+S A
Sbjct: 115 SVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQA 174
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGY 255
+ +AY++I G GG P V+ F L S P + FD +G
Sbjct: 175 IGYAYENIAMGKQTLMLAGGAEELSGPAVA-VFDTLYATSTRNDEPHLTPRPFDAKRDGL 233
Query: 256 CRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYS 311
E + L++ + AK ++A +V N DG +T P+ + R ++
Sbjct: 234 VVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH---MTQPTASTMARAMQLALE 290
Query: 312 ECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGV 371
+ ++D +A++ AHGT T GD E QA F G P I S+KS +GH+ A G
Sbjct: 291 DAKLDANAIAYVNAHGTSTDRGDVAESQATARTF--GERMP--ISSLKSYVGHTLGACGA 346
Query: 372 CSVTKVILAMENGIIPPNINFKSP 395
I M+ P +N
Sbjct: 347 LEAWWTIEMMKRNWYAPTLNLTEV 370
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 127 bits (323), Expect = 1e-31
Identities = 72/332 (21%), Positives = 139/332 (41%), Gaps = 31/332 (9%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
E + A ++ MD + + EA +G++P +L ++ GV +G+
Sbjct: 52 EADFDPVAEG-FGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAA 110
Query: 145 ---------CFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACS 195
S+S + W + ++ +++ V++ +G GP V + C+
Sbjct: 111 ATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCT 170
Query: 196 SSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDE 250
S L ++ +A ++I +G + F G + + P V F + + P+ + FD
Sbjct: 171 SGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDG 230
Query: 251 AANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQR 304
+G+ +E + L+ A R++A + T C+ Y +T G
Sbjct: 231 TRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYH---MTGLKADGREMAE 287
Query: 305 LLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIG 363
+ E D ++ +I AHG+GT+ D E A + G + S+KS +G
Sbjct: 288 TIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRAL--GEHARRTPVSSIKSMVG 345
Query: 364 HSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
HS A G + +LA+E+G++PP N ++
Sbjct: 346 HSLGAIGSLEIAACVLALEHGVVPPTANLRTS 377
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 127 bits (321), Expect = 1e-31
Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 24/325 (7%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
E+ FD + + K+A MD + AV D+G+ ++ GV+IG+
Sbjct: 53 ELKDFDVEKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGG 111
Query: 145 -CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
E++ F + +++ F + M + +VS G G + T +AC+++ ++
Sbjct: 112 METFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSI 171
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCR 257
A+K I G +A GG + F LS P+ C+ FD+ +G+
Sbjct: 172 GDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFII 231
Query: 258 SEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFYS 311
E I+ L++ + AK ++YA +V D Y IT P+ G R ++
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYH---ITAPAPNGEGAARAMKMAID 288
Query: 312 ECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIGHSEPASG 370
+ + P + +I AHGT T D E QA++ VF G L I S KS GH+ ASG
Sbjct: 289 DAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVF--GEHAKKLAISSTKSMTGHTLGASG 346
Query: 371 VCSVTKVILAMENGIIPPNINFKSP 395
+L + + II P I+ K+
Sbjct: 347 GIEAIFALLTIRDNIIAPTIHLKNQ 371
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 127 bits (321), Expect = 2e-31
Identities = 84/326 (25%), Positives = 140/326 (42%), Gaps = 25/326 (7%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
EV FDA F + K+A MD C + + +A+ DA + L + GV IG
Sbjct: 56 EVKDFDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGG 114
Query: 145 -CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
E ++T +K + + F I M + + LG GP+ +AC++ A+
Sbjct: 115 LKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAI 174
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYC 256
A++ +++G+ A GG + P FA LS P + FD+ +G+
Sbjct: 175 GDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFV 234
Query: 257 RSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFY 310
E I+ L++ + A ++Y +V CD Y IT P G R +
Sbjct: 235 MGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYH---ITAPVPDGRGATRAIAWAL 291
Query: 311 SECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIGHSEPAS 369
+ + P+ +++I AHGT T D E +A++ G + + S KS GH S
Sbjct: 292 KDSGLKPEMVSYINAHGTSTPANDVTETRAIKQAL--GNHAYNIAVSSTKSMTGHLLGGS 349
Query: 370 GVCSVTKVILAMENGIIPPNINFKSP 395
G ++A+ +PP IN ++P
Sbjct: 350 GGIEAVATVMAIAEDKVPPTINLENP 375
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 127 bits (321), Expect = 2e-31
Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 24/325 (7%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
E+ F+ + K+A MD + + EAV DA ++ + GV+IG+
Sbjct: 77 ELKNFNIEDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGG 135
Query: 145 -CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
E +K +++ F + M +VS LG GP+ +AC++ ++
Sbjct: 136 METFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSI 195
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCR 257
A+K ++ G +A GG + F+ LS + C+ F E +G+
Sbjct: 196 GEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVM 255
Query: 258 SEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFYS 311
E I+ ++ + A+ +YA +V T D Y IT P+ G R ++
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYH---ITAPAPEGEGGSRAMQAAMD 312
Query: 312 ECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIGHSEPASG 370
+ ++PK++ ++ AHGT T VGD EV+A++N F G L + S KS GH A+G
Sbjct: 313 DAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTF--GEAAKHLKVSSTKSMTGHLLGATG 370
Query: 371 VCSVTKVILAMENGIIPPNINFKSP 395
L++++ + P I+ +P
Sbjct: 371 GIEAIFSALSIKDSKVAPTIHAVTP 395
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 126 bits (320), Expect = 2e-31
Identities = 69/326 (21%), Positives = 122/326 (37%), Gaps = 31/326 (9%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
+++ F A + + DP R+ L A+ DA +P+SL GV
Sbjct: 58 QIDDFHAPDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGG 116
Query: 145 -CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
F+ E + + ++ + A+ ++S G+ GPS + + + L AL
Sbjct: 117 FDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDAL 176
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCR 257
HA ++IR G GG + L P+ + G +S PD FDE A GY
Sbjct: 177 GHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGYVP 235
Query: 258 SEAVCIMYLQ-----KSKDAKRVYARVVHAKTNCDGYKEQGITYP-SGALQ--QRLLEDF 309
E I+ L+ +++ Y + + D + +G + + L D
Sbjct: 236 GEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAP---GSGRPAGLERAIRLALND- 291
Query: 310 YSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPAS 369
P+++ + A G G D E +A+ VF + + K+ G
Sbjct: 292 ---AGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREG---VPVTVPKTTTGRLYSGG 345
Query: 370 GVCSVTKVILAMENGIIPPNINFKSP 395
G V ++++ G+I P S
Sbjct: 346 GPLDVVTALMSLREGVIAPTAGVTSV 371
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 126 bits (320), Expect = 2e-31
Identities = 76/327 (23%), Positives = 139/327 (42%), Gaps = 27/327 (8%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
V F+ + K+ MD + + +A+ D+G+ ++ G IG+
Sbjct: 67 LVKDFNCEDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGG 125
Query: 145 --CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
E T +I+ F + M+A ++ G+ GPS ++ +A +S ++
Sbjct: 126 LGLI-EENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHN 184
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGY 255
+ HA + I G + GG P F LS P + +D+ +G+
Sbjct: 185 IGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGF 244
Query: 256 CRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDF 309
+ ++ L++ + AK ++YA +V + D Y +T P GA + +
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYH---MTSPPENGAGAALAMANA 301
Query: 310 YSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIGHSEPA 368
+ ++ + ++ AHGT T GD E QA++ +F G + +L+ S KS GH A
Sbjct: 302 LRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIF--GEAASRVLVSSTKSMTGHLLGA 359
Query: 369 SGVCSVTKVILAMENGIIPPNINFKSP 395
+G ILA+ + +PP IN +P
Sbjct: 360 AGAVESIYSILALRDQAVPPTINLDNP 386
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 126 bits (318), Expect = 4e-31
Identities = 69/341 (20%), Positives = 142/341 (41%), Gaps = 51/341 (14%)
Query: 92 KFDAAFFGVHF--------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGS- 136
+ + H K M +A+ DAG++P++ + +
Sbjct: 38 ELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNP 97
Query: 137 KTGVFIGA------CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSY 188
+ G+ G+ + + + +T + ++ ++ ++G +Y
Sbjct: 98 RVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157
Query: 189 TVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PD 242
++ SAC++S + + +A + I+ G + F GG ++ +F +G LS P+
Sbjct: 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPE 216
Query: 243 GRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS 298
+++D +G+ + ++ +++ + A +YA +V DG + PS
Sbjct: 217 KASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD---MVAPS 273
Query: 299 GALQQR----LLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLL 354
G R + + +D ++ +HGT T VGD +E+ A+ VF G +P
Sbjct: 274 GEGAVRCMKMAMHG--VDTPID-----YLNSHGTSTPVGDVKELAAIREVF--GDKSP-A 323
Query: 355 IGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEEL 364
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 124 bits (313), Expect = 2e-30
Identities = 95/341 (27%), Positives = 149/341 (43%), Gaps = 46/341 (13%)
Query: 92 KFDAAFFGVHF--------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSK 137
+FDA+ V K+ +D + L A+ DAG+ P+ L +
Sbjct: 38 RFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPER 97
Query: 138 TGVFIGA-----CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTV 190
G +G E++ F E+ +I+ F I M + ++ G GPS TV
Sbjct: 98 VGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTV 157
Query: 191 DSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRC 245
+AC++ AL A + I+ G + GG + P FA + LS P+
Sbjct: 158 VTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKAS 217
Query: 246 KSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS--- 298
+ F + +G+ E ++ L+ + AK R+YA +V + D + IT P
Sbjct: 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHH---ITEPHPEG 274
Query: 299 -GALQ--QRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLL 354
GA R L+D + P+ + +I AHGT T VGD EV A++ VF G L+
Sbjct: 275 KGAALAMARALKD----AGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVF--GDHAKRLM 328
Query: 355 IGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
+ S KS IGH A+G + A+ +G+IPP IN + P
Sbjct: 329 VSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDP 369
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 124 bits (313), Expect = 2e-30
Identities = 68/341 (19%), Positives = 133/341 (39%), Gaps = 51/341 (14%)
Query: 92 KFDAAFFGVHF--------------KQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSK 137
++ F + +A+ DAG+ + + +
Sbjct: 59 EYAELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEVSNER 118
Query: 138 TGVFIG---ACFSESEKTWFYEKLQING------FGITGCSRAMLANRVSYWLGVNGPSY 188
TG+ +G + + + G F + + + ++ + + G +Y
Sbjct: 119 TGIIMGSGGPSTRTIVDS--ADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINY 176
Query: 189 TVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PD 242
++ SAC++S + + +AY+ I+ G + F GGC +S+ F +G +S P
Sbjct: 177 SISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWT-LSVLFDAMGAMSSKYNDTPS 235
Query: 243 GRCKSFDEAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS 298
+++D+ +G+ + ++ L+ + A ++Y +V DGY + PS
Sbjct: 236 TASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYD---MVAPS 292
Query: 299 GALQQRL----LEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLL 354
G R L ++D +I H T T GD E++A+ +F G P
Sbjct: 293 GEGAIRCMKMALST--VTSKID-----YINPHATSTPAGDAPEIEAIRQIFGAGDVCP-P 344
Query: 355 IGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
I + KS GHS A+GV +L M+N I + + +
Sbjct: 345 IAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEEL 385
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 122 bits (309), Expect = 4e-30
Identities = 58/361 (16%), Positives = 96/361 (26%), Gaps = 57/361 (15%)
Query: 450 RSSTHYPGDTRPLWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKP--KGVDVKRI 507
R G + +F G + + A
Sbjct: 87 RGLFLVVGGPLRVGLLFPGQAAPVHADR------GALGHLLGDADAGTGSDPDSGVKPAE 140
Query: 508 ITDTN---PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCF 564
DT P + A + + L L P +GHS+GEL G
Sbjct: 141 PVDTAVAQPAII-----------ADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGAL 189
Query: 565 TVEQTILAAYYRGLASVETEFIRGAMAAVGLGYKDLRSRC-PPEIEVACHNSPDSSTISG 623
+ T+ A RG A M ++ R VA N ++G
Sbjct: 190 DADDTLALARARGEAMSAATEAPSGMLSLRADLAAARELAAGTGAVVAVDNGERHVVVAG 249
Query: 624 PEENVKKFVAELQADNIFARTINVANTEKHA---PLKQCRAQRPPAPWLTDDIRACMKAR 680
+ + + I A + V+ HA PL AP + +R
Sbjct: 250 TRPELDRVAEAARHAGIEATPLAVS----HAFHSPLM--------APAA-EALRRAA--- 293
Query: 681 DRAHVKFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNA 740
+ ++ P S W E L PV F E + +
Sbjct: 294 --GRLPWRR-PERPVA---STVTGAWWADED---PVEVLVRQLTGPVRFREALGLLDADL 344
Query: 741 ITLEIAPHGLLQAILRRSLPKTVTNVSLTQRENANSVLYLLQALGKLYESGVHPHLANLY 800
+ +E+ P +L A+ + V + A S + L+ +G +
Sbjct: 345 L-VEVGPGRMLSALAEAAGRTAV-----SLDAGAASAAGMAAGTAALFAAGAVDDATPFF 398
Query: 801 P 801
Sbjct: 399 A 399
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 119 bits (301), Expect = 6e-29
Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 33/328 (10%)
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---- 144
E+ F + K + D L EAV A ++ ++L + GV + +
Sbjct: 72 EIQDFPFDKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGG 130
Query: 145 -CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
E + +EK ++ + M + V+ G NG ++++ACSSS A+
Sbjct: 131 IKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAI 190
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCR 257
A++SI+ G + VGG + P+ F L LS P FD+ NG+
Sbjct: 191 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVM 250
Query: 258 SEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QRLLE 307
E ++ L+ + A+ + A VV CD Y +T P GA++ + LE
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYH---MTSPHPEGQGAIKAIKLALE 307
Query: 308 DFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEP 367
+ E+ P+ +A++ AHGT T + E A+ V G+ + + S KS GH
Sbjct: 308 E----AEISPEQVAYVNAHGTSTPANEKGESGAIVAVL--GKE--VPVSSTKSFTGHLLG 359
Query: 368 ASGVCSVTKVILAMENGIIPPNINFKSP 395
A+G I AM + +P
Sbjct: 360 AAGAVEAIVTIEAMRHNFVPMTAGTSEV 387
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 113 bits (285), Expect = 9e-27
Identities = 91/390 (23%), Positives = 158/390 (40%), Gaps = 50/390 (12%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHP-----EIPQRTGKLY 88
ITGI V P ++L + + + ++ K P +P+ + +
Sbjct: 25 ITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEE-----YKSIPCSVAAYVPRGSDE-- 77
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKS-LRGSKTGVFIGA--- 144
+F+ F V +M + + A+ D+G +P+S TGV IG
Sbjct: 78 --GQFNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMI 134
Query: 145 --CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
F K +++ F + M A +VS + GP++ V +AC++ +A
Sbjct: 135 PLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHA 194
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYC 256
+ +++ I G + GG + C+ P F+R LS P C+ F +G+
Sbjct: 195 VGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRDGFV 254
Query: 257 RSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QRLL 306
E ++ L++ + A R+YA V+ + D IT P GAL+ L
Sbjct: 255 MGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGH---ITAPDPEGEGALRCMAAAL 311
Query: 307 EDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIGHS 365
+D V P+ +++I AH T T +GD E +A++++F L + S K GH
Sbjct: 312 KD----AGVQPEEISYINAHATSTPLGDAAENKAIKHLF--KDHAYALAVSSTKGATGHL 365
Query: 366 EPASGVCSVTKVILAMENGIIPPNINFKSP 395
A+G LA +PP +N
Sbjct: 366 LGAAGAVEAAFTTLACYYQKLPPTLNLDCS 395
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 112 bits (282), Expect = 2e-26
Identities = 89/397 (22%), Positives = 151/397 (38%), Gaps = 49/397 (12%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHPEIPQRTG-------- 85
+TG+ V P V +L + ++ DD + K E ++
Sbjct: 5 VTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAF 64
Query: 86 --KLYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKS-LRGSKTGVFI 142
+FD A + + + + EA+ DA P +TGV I
Sbjct: 65 VPYGSNPGEFDEA----LWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 143 GA-----CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACS 195
G C EK +++ F I M + VS G GP++ +AC+
Sbjct: 121 GGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACA 180
Query: 196 SSLYALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFD 249
+ +++ A + I+ G + GG + F+R LS P + FD
Sbjct: 181 TGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFD 240
Query: 250 EAANGYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GAL 301
+G+ E ++ L++ + AK ++YA + + D + IT P GA+
Sbjct: 241 CDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHH---ITQPPEDGKGAV 297
Query: 302 Q--QRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCP-GRTTPLLIGSV 358
R L + P + ++ AH T T +GD E +A++ VF + L S
Sbjct: 298 LAMTRALRQ----SGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSST 353
Query: 359 KSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
K GH A+G ILA+ +G+ P +N K+P
Sbjct: 354 KGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 390
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 112 bits (282), Expect = 2e-26
Identities = 89/392 (22%), Positives = 150/392 (38%), Gaps = 51/392 (13%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHP-----EIPQRTGKLY 88
+TGI V P ++L + + + DD E +
Sbjct: 28 VTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDI-----AGELSAKVGGTVQDVAED-- 80
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKS-LRGSKTGVFIGA--- 144
FD V K+ MD ++ + EA+ +AG P++ + +T + +
Sbjct: 81 PEGGFDPERS-VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIG 139
Query: 145 --CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
+ +++ F I + A ++S GP +AC++S+ A
Sbjct: 140 GFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQA 199
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQ-FARLGVLS------PDGRCKSFDEAAN 253
+ A + IR G + GG VSL FA LS P + FD +
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDK-VSLGGFAAARALSTGFSEEPVRASRPFDRDRD 258
Query: 254 GYCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--Q 303
G+ E ++ ++ A R A ++ T D Y +T GA++ +
Sbjct: 259 GFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYH---MTAGPDDGSGAMRAMK 315
Query: 304 RLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIG 363
L +V P+ + ++ AH T T VGD E++AL+ VF G I S KS G
Sbjct: 316 LALRM----GDVAPEQVDYVNAHATSTPVGDAGEIEALKTVF--GVGAGPAISSTKSATG 369
Query: 364 HSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
H A+G ILA+ +G++P +N + P
Sbjct: 370 HLLGAAGAIEAAFSILALRDGVLPGTLNLEHP 401
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 111 bits (281), Expect = 2e-26
Identities = 74/387 (19%), Positives = 140/387 (36%), Gaps = 54/387 (13%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKF 93
+T + S D+ + L + + + D+ ++ + G + K
Sbjct: 16 VTAVTATTSISPDIESTWKGLLAGESGIHALEDEF------VTKWDLAVKIGG--HL-KD 66
Query: 94 DAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFS------ 147
+ M + R+ + AG + + V +G +
Sbjct: 67 PVDSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGSPE--VDPDRFAVVVG---TGLGGAE 120
Query: 148 --ESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEH 203
+++ + A + LG T SACSS A+ H
Sbjct: 121 RIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAH 180
Query: 204 AYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRS 258
A++ I G + A GG + F+ + +S P+ + FD+ +G+
Sbjct: 181 AWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFG 240
Query: 259 EAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QRLLED 308
EA +M ++ + AK + AR++ A D + + P+ A + R LE
Sbjct: 241 EAGALMLIETEEHAKARGAKPLARLLGAGITSDAFH---MVAPAADGVRAGRAMTRSLEL 297
Query: 309 FYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPA 368
+ P ++ + AHGT T +GD E A+ + + KS +GHS A
Sbjct: 298 ----AGLSPADIDHVNAHGTATPIGDAAEANAIRVAG--CDQAA--VYAPKSALGHSIGA 349
Query: 369 SGVCSVTKVILAMENGIIPPNINFKSP 395
G +L + +G+IPP +N+++P
Sbjct: 350 VGALESVLTVLTLRDGVIPPTLNYETP 376
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 109 bits (274), Expect = 2e-25
Identities = 82/387 (21%), Positives = 147/387 (37%), Gaps = 52/387 (13%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKF 93
+TGIA +TD + L + + + D E ++P R G +
Sbjct: 32 VTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPF------VEEFDLPVRIGG--HL-LE 82
Query: 94 DAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGA---CFSESE 150
+ + + M + R+ + +AG + ++ V IG E
Sbjct: 83 EFDHQ-LTRIELRRMGYLQRMSTVLSRRLWENAGSPE--VDTNRLMVSIGTGLGSAEELV 139
Query: 151 KTWFYEKLQING------FGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHA 204
+ Y+ ++ G + A V T SAC+S A+ A
Sbjct: 140 FS--YDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARA 197
Query: 205 YKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANGYCRS 258
++ I G +AA GG + FA++ ++ P G C+ FD +G+
Sbjct: 198 WQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFG 257
Query: 259 EAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QRLLED 308
E ++ ++ + AK + AR++ A DG+ + P A R ++
Sbjct: 258 EGGALLLIETEEHAKARGANILARIMGASITSDGFH---MVAPDPNGERAGHAITRAIQL 314
Query: 309 FYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPA 368
+ P ++ + AH TGT+VGD E +A+ N R + + KS +GHS A
Sbjct: 315 ----AGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNR---PAVYAPKSALGHSVGA 367
Query: 369 SGVCSVTKVILAMENGIIPPNINFKSP 395
G +LA+ + +IPP +N +
Sbjct: 368 VGAVESILTVLALRDQVIPPTLNLVNL 394
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 106 bits (268), Expect = 1e-24
Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 52/392 (13%)
Query: 37 ITGIAGVFPDSTDVRDFGEKL---NNKVDLISDDDRRWKLGKEHP-----EIPQRTGKLY 88
ITG+ V P ++ V + ++L + +++ + + IP G
Sbjct: 14 ITGLGLVSPLASGVEETWKRLLAGESGARRVTEFE-----VDDLACQIACRIPVGDGTNG 68
Query: 89 EVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKS-LRGSKTGVFIGA--- 144
F+ + K+ +DP + +A+ DAG +P++ +TGV IG+
Sbjct: 69 T---FNPDLH-MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIG 124
Query: 145 --CFSESEKTWFYEK--LQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYA 200
+K +I+ F I G + + VS + GP+++V +AC++ +A
Sbjct: 125 GIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHA 184
Query: 201 LEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAANG 254
+ A + I G + GG + FA LS P + +DE +G
Sbjct: 185 IGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDG 244
Query: 255 YCRSEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS----GALQ--QR 304
+ E I+ L++ + A ++YA V+ + D + IT P+ GA +
Sbjct: 245 FVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFH---ITAPTESGEGAQRCMVA 301
Query: 305 LLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG-RTTPLLIGSVKSNIG 363
L+ + P + +I AHGT T + D E+ A+E V G + + S KS+IG
Sbjct: 302 ALKR----AGIVPDEIDYINAHGTST-MADTIELGAVERVV--GEAAAKISMSSTKSSIG 354
Query: 364 HSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
H A+G LA+ + I P +N +P
Sbjct: 355 HLLGAAGAAEAVFSTLAIRDNIAPATLNLDNP 386
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 103 bits (258), Expect = 2e-22
Identities = 106/659 (16%), Positives = 188/659 (28%), Gaps = 226/659 (34%)
Query: 291 EQGITYPSG----ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFC 346
E + P+ A Q + E F + A D E E
Sbjct: 17 EHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFA-----------ADDEPTTPAE---- 59
Query: 347 PGRTTPLL---IGSVKSNIGHSEPASGVCSVTKVIL-AMENGIIPPNINFKSPRKDIPSF 402
L+ +G V S + V + L EN + N DI
Sbjct: 60 ------LVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFENCYLEGN--------DI--- 101
Query: 403 HNGKIQLESRPLDAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIRSS---THYPGDT 459
H +L D V+ I + + DKK S+ G+
Sbjct: 102 HALAAKLLQEN-DTTLVKTKELIKN------YITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 460 RPLWFVFSGMGSQ---WDGMGTELMEI-----PIFAATIEKLQAVLK------------- 498
+ L +F G G+ ++ EL ++ + I+ L
Sbjct: 155 Q-LVAIFGGQGNTDDYFE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 499 PKGVDVKRIITDTNPKMFDNILN----SFVGIAAIQIG-LVDILRALNITPDHIIGHSVG 553
+G+++ + + + + L S I IQ+ V + L TP + + G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 554 ELGC----------AYADG--CFT--VEQTILAAYYRGLASVET---------------- 583
G A D F V + I ++ G+ E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 584 --EFIRGAMAAV-GLGYKDLRSRC-------PPE--IEVACHNSPDSSTISGPEENVKKF 631
E + M ++ L + ++ P +E++ N + +SGP
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP------- 382
Query: 632 VAELQADNIFARTINVANTEKHAP--LKQCRA---QRPPAPWLTDDIRACMKARDRAHVK 686
L N+ R AP L Q R +R + +
Sbjct: 383 PQSLYGLNLTLRKA-------KAPSGLDQSRIPFSERKL----------------KFSNR 419
Query: 687 FQP--KPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAITLE 744
F P P + L ++ N L K ++ ++ ++ PV ++ + ++
Sbjct: 420 FLPVASPFHSHLLVPASDLIN--KDLVK-NNVSFNAKDIQIPVYDTFDGSDLRVLSGSI- 475
Query: 745 IAPHGLLQAILRRSLP---KTVTNVSLTQRENANSVLYLLQALGKLYESGVHPHLANLYP 801
++ I+R LP +T T T H+
Sbjct: 476 --SERIVDCIIR--LPVKWETTTQFKAT-------------------------HI----- 501
Query: 802 KIDF-PVSRGTPMISPLVRWEHSEDWYVTTYRMQEKLKSGERTVVVSL----KDDEMEF 855
+DF P G + L T+R ++ +G R +V DD+ F
Sbjct: 502 -LDFGP--GGASGLGVL------------THRNKD--GTGVRVIVAGTLDINPDDDYGF 543
Score = 96.3 bits (239), Expect = 3e-20
Identities = 40/279 (14%), Positives = 84/279 (30%), Gaps = 95/279 (34%)
Query: 470 GSQWDGMGTELMEIPIFAATI-----EKLQAVLKPKGVDVKRIITDTNPK---------- 514
GSQ GMG +L + A + + G + I+ + NP
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY---GFSILDIVIN-NPVNLTIHFGGEK 1680
Query: 515 -----------MFDNILN-------------------SFVG--------------IAAIQ 530
+F+ I++ +F + ++
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 531 IGLVDILRALNITPDHII--GHSVGE---LGCAYADGCFTVEQTILAAYYRGLASVETEF 585
+ L++ + P GHS+GE L + A ++E + +YRG+ ++
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAAL-ASLA-DVMSIESLVEVVFYRGMT-MQVAV 1797
Query: 586 IRG-------AMAAV-------GLGYKDLRSRC-------PPEIEVACHNSPDSST-ISG 623
R M A+ + L+ +E+ +N + +G
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 624 PEENVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQ 662
+ L + I + I++ +K L++
Sbjct: 1858 DLRALDTVTNVL--NFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 58.1 bits (140), Expect = 1e-08
Identities = 67/408 (16%), Positives = 113/408 (27%), Gaps = 171/408 (41%)
Query: 127 GINPKSLRGSKTGVF------IGACFSESEKTW--FYEKLQINGFGITGCSRAMLANRVS 178
G P LR G + A +W F+ R + V
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-----------SVRKAI--TVL 303
Query: 179 YWLGVNG----PSYTVDSACSSSLYALEHAYK------SIRDGHCNA--AFVGGCNLCL- 225
+++GV P+ ++ + +LE+ SI + +V N L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 226 ---HPYVSL-----QFARLGVLSPDGRCKSFDEAANGYCRS-EAVCIMYLQKSKDAKRVY 276
+SL V+S G +S + + L+K+K
Sbjct: 362 AGKQVEISLVNGAKNL----VVS-------------GPPQSLYGLNL-TLRKAK------ 397
Query: 277 ARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPE 336
A + D Q R+ +SE K+
Sbjct: 398 -----APSGLD--------------QSRIP---FSE-----------------RKL---- 414
Query: 337 EVQALENVFCPGRTTPLLIGSVKSNIGHS---EPASGVCSVTKVILAMENGIIPPNINFK 393
N F P +P HS PA + +I ++ N++F
Sbjct: 415 ---KFSNRFLP-VASPF----------HSHLLVPA------SDLINK---DLVKNNVSFN 451
Query: 394 SPRKDIPSFHNGKIQLESRPLDAEYVRLFHEIHSDDIAGHMYRGYTILSANSDKKIR-SS 452
+ IP + D +R + S I+ + L + + +
Sbjct: 452 AKDIQIPVYDTF---------DGSDLR----VLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 453 THY----PGDTRPLWFVFSGMGS----QWDGMGTELMEIPIFAATIEK 492
TH PG SG+G DG G + I A T++
Sbjct: 499 THILDFGPGGA-------SGLGVLTHRNKDGTGVRV----IVAGTLDI 535
Score = 43.1 bits (101), Expect = 4e-04
Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 77/257 (29%)
Query: 664 PPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLS---TSNTE--ANWTTHLAKY--SSA 716
P A + + +++ K P+P T+ E + +++ S
Sbjct: 23 PTASFF-----IASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 717 EYHTNNLLSPVL--FEETSRHIQKNAI------------TLEIAPHGLLQA------ILR 756
+ +L+ L FE + +++ N I T + L++ + +
Sbjct: 77 VGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 757 RSLPKTVTNVSLTQRENANSV-LYLL---QALGKLY--ESGVHPHLANLYPKIDFPVSRG 810
R K + +L + + L + Q Y E L +LY
Sbjct: 135 RPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEE------LRDLY-------QTY 180
Query: 811 TPMISPLVRWEHSEDWYVTTYRMQEKLKSGERTVVVSLKDDEMEFVSG----HMIDGRNL 866
++ L++ E L RT + D E F G ++ +
Sbjct: 181 HVLVGDLIK------------FSAETLSELIRTTL----DAEKVFTQGLNILEWLENPSN 224
Query: 867 FPATGYLATVCNVSEVP 883
P YL + +S P
Sbjct: 225 TPDKDYLLS-IPIS-CP 239
Score = 36.6 bits (84), Expect = 0.051
Identities = 56/401 (13%), Positives = 102/401 (25%), Gaps = 178/401 (44%)
Query: 82 QRTG---KLYEVNK-----FDAAFFGVHFKQA------------------HTMDPMCRII 115
Q G LY+ +K ++ A HFK H + I
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 116 LEK----TYEAVIDAGINPKSLRGSKTGVFIGACFSESE----KTWFYEKLQINGFGITG 167
E +E ++D + + + F + T F Q
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQP------- 1734
Query: 168 CSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHP 227
A+ + ++ L+ K + +A F G H
Sbjct: 1735 ---ALTL--MEK----------------AAFEDLKS--KGLIPA--DATFAG------H- 1762
Query: 228 YVSL-QFARL----GVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHA 282
SL ++A L V+S + + V+ R
Sbjct: 1763 --SLGEYAALASLADVMS-------IESLV--------------------EVVFYR---- 1789
Query: 283 KTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQAL- 341
G+T + L Y ++P +A E +Q +
Sbjct: 1790 ----------GMTMQVAVPRDELGRSNYGMIAINPGRVA---------ASFSQEALQYVV 1830
Query: 342 ENVFCPGRTTPLLIGSVKSNIGHSEPA----SG---VCSVTKVILAMENGIIPPNINFKS 394
E V G+ T L+ E V + L ++ NF
Sbjct: 1831 ERV---GKRTGWLV----------EIVNYNVENQQYVAAGDLRALDTVTNVL----NFIK 1873
Query: 395 PRKDIPSFHNGKIQLESRPLDAEYVRLFHEIHSDDIAGHMY 435
+K I + + L + +++ GH++
Sbjct: 1874 LQK---------IDI---------IELQKSLSLEEVEGHLF 1896
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 95.0 bits (236), Expect = 6e-20
Identities = 63/362 (17%), Positives = 121/362 (33%), Gaps = 53/362 (14%)
Query: 51 RDFGEKLNNKVDL--ISDDDRRWKLGKEHPEI-PQRTGKL-----YEVNK-FDAAFFGVH 101
+F + +KV++ I + + ++ + + + ++ +DA +GV
Sbjct: 1117 EEFKREHGDKVEIFEIPETGQYTVRLRKGATLLIPKALQFDRLVAGQIPTGWDARRYGVP 1176
Query: 102 FKQAHTMDPMCRIILEKTYEAVIDAGINP-----KSLRGSKTGVFIGACFS-----ESEK 151
+DP+ +L EA++ +GI K + S+ G IG+
Sbjct: 1177 EDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMY 1236
Query: 152 TWFYEKLQI-NGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRD 210
Y + M A L GP T AC++++ +L+ Y +I
Sbjct: 1237 KDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQ 1296
Query: 211 GHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----------PDGRCKSFDEAANGYCRSE 259
G VGG + S +FA +G S P + NG+ S+
Sbjct: 1297 GKARVCLVGGFD-DFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQ 1355
Query: 260 AVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS---GALQ---------- 302
+ + ++ A +Y V T D G + P+ G L
Sbjct: 1356 GCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKI---GRSVPAPGQGVLTTAREKSGNFP 1412
Query: 303 QRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVKSNI 362
LL+ Y +++ + I+ + EEV A+++ ++
Sbjct: 1413 SPLLDIKYRRRQLELR-RQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERT 1471
Query: 363 GH 364
H
Sbjct: 1472 EH 1473
Score = 70.0 bits (171), Expect = 3e-12
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 315 VDPKNLAWIEAHGTGTKVGDPEEVQALENVF-CPGRTT--PLLIGSVKSNIGHSEPASGV 371
+ +L HGT T D E + GRT +L K GH + A+G
Sbjct: 1512 LTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGA 1571
Query: 372 CSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPLDAEYVR 420
+ + + GI+P N N + K + F I SR + + ++
Sbjct: 1572 WMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDY--IVYPSRSIKTDGIK 1618
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 84.6 bits (209), Expect = 9e-17
Identities = 57/406 (14%), Positives = 112/406 (27%), Gaps = 70/406 (17%)
Query: 45 PDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHP-----EIPQRTGKLYEVNKFDAAFFG 99
D D+ + E V L+ +IP ++A +G
Sbjct: 1149 GDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIP---------TGWNAKTYG 1199
Query: 100 VHFKQAHTMDPMCRIILEKTYEAVIDAGINP-----KSLRGSKTGVFIGACFS-----ES 149
+ +DP+ +L EA I +GI K + S+ G G+
Sbjct: 1200 ISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRG 1259
Query: 150 EKTWFYEKLQI-NGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSI 208
++ + N M A + +GP T AC++S+ +++ ++I
Sbjct: 1260 MFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETI 1319
Query: 209 RDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----------PDGRCKSFDEAANGYCR 257
G VGG + S +F + S P + NG+
Sbjct: 1320 LSGKARICIVGGYDDFQEE-GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFME 1378
Query: 258 SEAVCIMYLQKSKDAK----RVYARVVHAKTNCDGYKEQGITYPS------GALQQRLLE 307
++ I + ++ A +Y V A T D G + P+ ++
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKI---GRSVPAPGKGILTTAREHHSS 1435
Query: 308 DFYSECEVD-------------------PKNLAWIEAHGTGTKVGDPEEVQALENVFCPG 348
Y+ ++ L ++ D E
Sbjct: 1436 VKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE-IH 1494
Query: 349 RTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKS 394
+ + + G+ G+ ++ S
Sbjct: 1495 NEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1540
Score = 80.4 bits (198), Expect = 2e-15
Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 17/197 (8%)
Query: 239 LSPDGRCKSFDEAANGYCRSEAVCIMYLQ------KSKDAKRVYA-RVVH-----AKTNC 286
L+ R + + L+ S+D R
Sbjct: 1443 LNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLR 1502
Query: 287 DGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVF- 345
++ G + + L + + +L HGT TK D E + +
Sbjct: 1503 AAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMK 1562
Query: 346 --CPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFH 403
P++ K GH + A+G + + + +GIIP N N + K + F
Sbjct: 1563 HLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFE 1622
Query: 404 NGKIQLESRPLDAEYVR 420
+ S+ L + VR
Sbjct: 1623 Y--VLYPSKTLKTDGVR 1637
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 77.2 bits (191), Expect = 2e-15
Identities = 36/194 (18%), Positives = 58/194 (29%), Gaps = 31/194 (15%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
V G G+Q G T+ + +P A + + G+D+ T
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQ 61
Query: 513 PKMFDNILNSFVGIAAIQI----GLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQ 568
P + GI + V TP + GHSVGE+ A G
Sbjct: 62 PLLV------AAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTA 115
Query: 569 TILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCPPE-IEVACHNSPDSSTISG 623
+ RGLA + M+A+ G + + + A N +G
Sbjct: 116 ALSLVRRRGLAMAEAAAVT--ETGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAG 173
Query: 624 PEENVKKFVAELQA 637
E + +
Sbjct: 174 TMEQLAALNEDKPE 187
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 77.7 bits (192), Expect = 3e-15
Identities = 49/196 (25%), Positives = 70/196 (35%), Gaps = 45/196 (22%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
F+F G GSQ GMG L + FA + AVL G ++ + D T
Sbjct: 9 FMFPGQGSQAKGMGGALFD--RFADLTAQADAVL---GYSIRALCVDDPRDELGRTQFTQ 63
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P ++ V TPD + GHS+GE L A GCF E
Sbjct: 64 PALY------VVNALTYYA----KCEDSGETPDFLAGHSLGEFNALLAA---GCFDFETG 110
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEIEVACHNSPDSSTI 621
+ R + + GAMAA+ + + + +A N+P I
Sbjct: 111 LKLVARRAELMSQARD-----GAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVI 165
Query: 622 SGPEENVKKFVAELQA 637
SGP + + A Q
Sbjct: 166 SGPAHEIARAEALFQH 181
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 76.0 bits (188), Expect = 4e-15
Identities = 63/335 (18%), Positives = 108/335 (32%), Gaps = 85/335 (25%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
+ G GSQ +GM + +++P A I +D+ R+ T
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAA---DLDLARLGTTASTEEITDTAVAQ 61
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRAL------NITPDHIIGHSVGELGCAYADGCFTV 566
P + + A + L + GHSVGE+ G
Sbjct: 62 PLIV------AATLLA--------HQELARRCVLAGKDVIVAGHSVGEIAAYAIAGVIAA 107
Query: 567 EQTILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCPPE-IEVACHNSPDSSTI 621
+ + A RG + TE M+AV G ++ SR + A N+
Sbjct: 108 DDAVALAATRGAEMAKACATE--PTGMSAVLGGDETEVLSRLEQLDLVPANRNAAGQIVA 165
Query: 622 SGPEENVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRACMK-AR 680
+G ++K + A R + VA + T M A
Sbjct: 166 AGRLTALEKLAEDPPAKAR-VRALGVA-----------------GAFHT----EFMAPAL 203
Query: 681 DR-----AHVKFQPKPRSTKWLSTSNTEANWTTHLAKYSSAEYHTNNLL----SPVLFEE 731
D A++ P +T SN + +SA + L+ PV ++
Sbjct: 204 DGFAAAAANIATAD-PTATLL---SNRDG------KPVTSAAAAMDTLVSQLTQPVRWDL 253
Query: 732 TSRHIQKNAIT--LEIAPHGLLQAILRRSLPKTVT 764
+ ++++ +T +E P G L I +R L
Sbjct: 254 CTATLREHTVTAIVEFPPAGTLSGIAKRELRGVPA 288
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 74.1 bits (183), Expect = 1e-14
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 46/196 (23%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
++F G GSQ GMG L + F A + VL G ++ + D T
Sbjct: 4 YMFPGQGSQAKGMGRALFD--AFPALTARADGVL---GYSIRALCQDDPDQRLSQTQFTQ 58
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P ++ V + R PD + GHS+GE L A G F E
Sbjct: 59 PALY------VVNALSYL-----KRREEEAPPDFLAGHSLGEFSALFAA---GVFDFETG 104
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCP----PEIEVACHNSPDSSTI 621
+ RG + G MAAV GL + +R +++A NSP I
Sbjct: 105 LALVKKRGELMGDARG-----GGMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVI 159
Query: 622 SGPEENVKKFVAELQA 637
SG ++ + + +A
Sbjct: 160 SGAKDEIARLQVPFEA 175
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 71.8 bits (177), Expect = 1e-13
Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 41/197 (20%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
FVF G GSQ GM ++ + T+++ L G D+ ++I D T
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADELNLTTNTQ 69
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P M A + +A P + GHS+GE L A G
Sbjct: 70 PVML------TAAYACYRA----WQQAGGAQPSIVAGHSLGEYTALVAA---GAIAFRDA 116
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEI-EVACHNSPDSST 620
+ +R A +V G MAA+ GL +R+ C + E N+P
Sbjct: 117 LPLVRFRAQAMQTAVPVG--VGGMAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVV 174
Query: 621 ISGPEENVKKFVAELQA 637
I+G + ++K +
Sbjct: 175 IAGTKAGIEKACEIAKE 191
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 71.4 bits (176), Expect = 2e-13
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 43/198 (21%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
F+F+G G+Q+ GMG E + ++ L G+D++ + + T
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEAL---GIDMEELCFNDPEGLLNKTEFT 62
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQ 568
P + +A + L L + G S+GE L + G E
Sbjct: 63 QPAII------TTNMAILT-----ALDKLGVKSHISCGLSLGEYSALIHS---GAINFED 108
Query: 569 TILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCPP-----EIEVACHNSPDSS 619
+ RG +V G M AV + + + +E A +NSP
Sbjct: 109 GVKLVKKRGKFMQEAVAEG--IGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQI 166
Query: 620 TISGPEENVKKFVAELQA 637
ISG ++K + ++
Sbjct: 167 VISGELVALEKAMEFIKE 184
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 70.2 bits (173), Expect = 4e-13
Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 42/197 (21%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRII---------TD-TN 512
F+F+G G+Q+ GMG + + PI TI++ VL G D++ +I T T
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDLRYLIDTEEDKLNQTRYTQ 62
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P + +A + +L+ PD + G S+GE L + G E
Sbjct: 63 PAIL------ATSVAIYR-----LLQEKGYQPDMVAGLSLGEYSALVAS---GALDFEDA 108
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEI-EVACHNSPDSST 620
+ RG + + G M AV + + C + A +N+P
Sbjct: 109 VALVAKRGAYMEEAAPAD--SGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIV 166
Query: 621 ISGPEENVKKFVAELQA 637
I+G V + V LQ
Sbjct: 167 IAGEVVAVDRAVELLQE 183
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 68.7 bits (169), Expect = 2e-12
Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 36/194 (18%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD----------TN 512
+F G GSQ GMG E + E+ L VD+K+ + + T
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNAL---KVDMKKTLFEENELLKESAYTQ 73
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P ++ V A Q L++ + P +GHS+GE + + G E+
Sbjct: 74 PAIY------LVSYIAYQ--LLNKQANGGLKPVFALGHSLGEVSAVSLS---GALDFEKA 122
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCP--PEIEVACHNSPDSSTISG 623
+ + RG + + +M V G+ + L S C + A N ++G
Sbjct: 123 LKLTHQRGKMMQEACANK--DASMMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAG 180
Query: 624 PEENVKKFVAELQA 637
++++K L+
Sbjct: 181 VKDDLKALEPTLKE 194
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 67.9 bits (167), Expect = 2e-12
Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 48/200 (24%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
+F G G+Q GM +L + L D+ + T
Sbjct: 14 IIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTL---DFDILETMFTDEEGKLGETENT 70
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRAL-NITPDHIIGHSVGE---LGCAYADGCFTVE 567
P + A +L AL N+ PD +GHS+GE L A + E
Sbjct: 71 QPALL------THSSA--------LLAALKNLNPDFTMGHSLGEYSSLVAA---DVLSFE 113
Query: 568 QTILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCPPE------IEVACHNSPD 617
+ RG + T G+MAAV GL + + C IE A N P
Sbjct: 114 DAVKIVRKRGQLMAQAFPTG--VGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPG 171
Query: 618 SSTISGPEENVKKFVAELQA 637
+SG + + + V + ++
Sbjct: 172 QIVVSGHKALIDELVEKGKS 191
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 66.9 bits (164), Expect = 6e-12
Identities = 44/205 (21%), Positives = 65/205 (31%), Gaps = 46/205 (22%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITD-----------TN 512
+F G GSQ GMG L+ P + VL G D+ +
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDLLELSLHGPQETLDRTVHCQ 85
Query: 513 PKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQT 569
P +F +AA++ L + ++ G SVGE L A G +
Sbjct: 86 PAIF------VASLAAVEK-LHHLQPSVIENCVAAAGFSVGEFAALVFA---GAMEFAEG 135
Query: 570 ILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC-------------PPEIEVAC 612
+ A R A + E M +V G C P EV+
Sbjct: 136 LYAVKIRAEAMQEASEAV--PSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSN 193
Query: 613 HNSPDSSTISGPEENVKKFVAELQA 637
+ PD ISG +E ++
Sbjct: 194 YLFPDCRVISGHQEALRFLQKNSSK 218
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 66.4 bits (163), Expect = 7e-12
Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 42/198 (21%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
FVF G GSQ GM EL PI T ++ + L D+ ++ T
Sbjct: 10 FVFPGQGSQHLGMLAELGLQQPIVLETFQQASSAL---AYDLWALVQHGPQERLDQTQFT 66
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQ 568
P + +A + P + GHS+GE L CA G E+
Sbjct: 67 QPALL------TADVAIFRC----WEALGGPKPQVMAGHSLGEYAALVCA---GALKFEE 113
Query: 569 TILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEI-EVACHNSPDSS 619
+ RG +V GAM A+ GL ++ S C ++ + A NS D +
Sbjct: 114 AVKLVEKRGQYMQEAVPVG--EGAMGAIIGLNEAEIESICENAALGQVVQPANLNSTDQT 171
Query: 620 TISGPEENVKKFVAELQA 637
ISG E V + + +
Sbjct: 172 VISGHSEAVDRALNMAKT 189
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 65.6 bits (161), Expect = 1e-11
Identities = 50/202 (24%), Positives = 71/202 (35%), Gaps = 50/202 (24%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
FVF G GSQ GM ++ PI T + A L G D+ + T
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQT 62
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRAL----NITPDHIIGHSVGE---LGCAYADGCF 564
P + +A + R P + GHS+GE L CA G
Sbjct: 63 QPALL------TASVA--------LYRVWQQQGGKAPAMMAGHSLGEYSALVCA---GVI 105
Query: 565 TVEQTILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEI-EVACHNS 615
+ RG +V GAMAA+ GL + C ++ NS
Sbjct: 106 DFADAVRLVEMRGKFMQEAVPEG--TGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNS 163
Query: 616 PDSSTISGPEENVKKFVAELQA 637
P I+G +E V++ A +A
Sbjct: 164 PGQVVIAGHKEAVERAGAACKA 185
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 65.2 bits (160), Expect = 1e-11
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 42/196 (21%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
+F G GS GMG L E P +++ +A L + +++ +
Sbjct: 4 ALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP----GLLKLMWEGPEEALTLTENQ 59
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQ 568
P + G AA + L A P GHS+GE A G +E
Sbjct: 60 QPALL------AAGYAAYRA----FLEAGGKPPALAAGHSLGEWTAHVAA---GTLELED 106
Query: 569 TILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRCPPEIEV---ACHNSPDSSTI 621
+ RG +V GAMAAV L ++++ +E A N+P+ + I
Sbjct: 107 ALRLVRLRGRYMQEAVPVG--EGAMAAVLKLPLEEIQKAL-EGLEGVEIANLNAPEQTVI 163
Query: 622 SGPEENVKKFVAELQA 637
SG + V++ L+
Sbjct: 164 SGRRQAVEEAAERLKE 179
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 65.2 bits (160), Expect = 2e-11
Identities = 50/202 (24%), Positives = 66/202 (32%), Gaps = 50/202 (24%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
FVF G GSQ GM EL E P T + GVD+ + T
Sbjct: 8 FVFPGQGSQSLGMLAELSELHPQIRETFAEASEGA---GVDLWALSQGGPEEMLNRTEYT 64
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRAL----NITPDHIIGHSVGE---LGCAYADGCF 564
P + G+A + R P + GHS+GE L A G
Sbjct: 65 QPALL------AAGVA--------VWRLWTAQRGQRPALLAGHSLGEYTALVAA---GVL 107
Query: 565 TVEQTILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC----PPEI-EVACHNS 615
++ RG + GAMAAV G + C ++ A NS
Sbjct: 108 SLHDGAHLVRLRGQFMQAAAPAG--VGAMAAVLGAEDAVVLEVCAEAAGSQVVVPANFNS 165
Query: 616 PDSSTISGPEENVKKFVAELQA 637
P I G V + +A L
Sbjct: 166 PGQIVIGGDAAAVDRALALLAE 187
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 66.2 bits (161), Expect = 4e-11
Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 68/278 (24%)
Query: 427 SDDIAGHMYRGYTILSANSDKKIRSS--THYPGDTRPLWFVFSGMGSQWDGMGTELMEI- 483
+ ++ + + DKK S+ L +F G G+ D EL ++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLY 177
Query: 484 ----PIFAATIEKLQAVLK-------------PKGVDVKRIITDTNPKMFDNIL----NS 522
+ I+ L +G+++ + + + + L S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 523 FVGIAAIQIGLVDIL-RALNITPD-------HIIGHSVGELGCAYADGCFT-------VE 567
I IQ+ + + L TP GHS G + + V
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 568 QTILAAYYRGLASVET---EFIRGA---------------MAAV-GLGYKDLRSRC---- 604
+ I ++ G+ E + + M ++ L + ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 605 -----PPEIEVACHNSPDSSTISGPEENVKKFVAELQA 637
++E++ N + +SGP +++ L+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Score = 46.6 bits (110), Expect = 4e-05
Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 28/205 (13%)
Query: 462 LWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILN 521
L F G + M K + + K + +
Sbjct: 1717 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1776
Query: 522 SFVGIAAIQIGLVDILRALNITPDHII--GHSVGE---LGCAYADGCFTVEQTILAAYYR 576
+ + ++ + L++ + P GHS+GE L ++E + +YR
Sbjct: 1777 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL--ADVMSIESLVEVVFYR 1834
Query: 577 GLA---SV---ETEFIRGAMAAV-------GLGYKDLRSRCPPE-------IEVACHNSP 616
G+ +V E M A+ + L+ +E+ +N
Sbjct: 1835 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1894
Query: 617 DSST-ISGPEENVKKFVAELQADNI 640
+ +G + L +
Sbjct: 1895 NQQYVAAGDLRALDTVTNVLNFIKL 1919
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 65.8 bits (160), Expect = 5e-11
Identities = 37/245 (15%), Positives = 78/245 (31%), Gaps = 65/245 (26%)
Query: 457 GDTRPLWFVFSGMGSQWDGMGTELMEI-----PIFAATIEKLQAVLKP------------ 499
+ ++ +F G G+ + EL EI I + +L+
Sbjct: 146 ENNVKIYSIFGGQGNIEEYFD-ELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYP 204
Query: 500 KGVDVKRIITDTNPKMFDNIL----NSFVGIAAIQIGLVDI-LRALNITPDHI------- 547
KG+D+ + + + + + L SF I +Q+ I + L P +
Sbjct: 205 KGLDILQWLHNPESQPDTDYLVSAPVSFPLIGLVQLAHYMITCKTLGREPGELLERFSGT 264
Query: 548 IGHSVGELG---CA----YADGCFTVEQTILAAYYRGLASVET----------------- 583
GHS G + A + + ++ + ++ GL S +
Sbjct: 265 TGHSQGIVVAAAIATARTWDEFATAAKRAVELLFWIGLRSQQAYPRTSLAPSTLQDSVEN 324
Query: 584 -EFIRGAMAAV-GLGYKDLRSRC---------PPEIEVACHNSPDSSTISGPEENVKKFV 632
E M ++ L ++ I ++ NS + ++GP ++
Sbjct: 325 GEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFVVTGPPISLYGLN 384
Query: 633 AELQA 637
L+
Sbjct: 385 LRLRK 389
Score = 43.5 bits (102), Expect = 4e-04
Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 40/230 (17%)
Query: 473 WDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSFVGIAAIQIG 532
+ M E + A K + + K + + + + + ++
Sbjct: 1743 YMSMTFETVN----ADGSIKTEKIFKEVDENSTSYTYRSPSGLLSATQFTQPALTLMEKA 1798
Query: 533 LVDILRA--LNITPDHIIGHSVGE---LGCAYADGCFTVEQTILAAYYRGLA---SV--- 581
+ +R+ L GHS+GE L +E + +YRGL +V
Sbjct: 1799 SFEDMRSKGLVQRDSTFAGHSLGEYSALVA--LADVMPIESLVSVVFYRGLTMQVAVERD 1856
Query: 582 ETEFIRGAMAAV-------GLGYKDLRSRCPP-------EIEVACHNSPDSST-ISGPEE 626
E AM AV + L+ +E+ +N + +G
Sbjct: 1857 EQGRSNYAMCAVNPSRISPTFTEQALQYVVENIAEVTGWLLEIVNYNVANMQYVAAGDLR 1916
Query: 627 NVKKFVAELQADNIFARTINVANTEKHAPLKQCRAQRPPAPWLTDDIRAC 676
+ L + + + I++ A + Q + L + I+ C
Sbjct: 1917 ALDTLANVL--NILKMQKIDIQ-----ALM-QSMSLEDVRAHLVEIIQEC 1958
Score = 33.5 bits (76), Expect = 0.42
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 434 MYRGYTILSANSDKKIRSSTHYPG----DTRPLWFVFSGMGSQWDGMGTELMEI-PIFAA 488
M G I+ ++ K + G + +VF+G GSQ GMG +L P+
Sbjct: 1640 MIAGRKIIKVDARNKDTDESVLQGEAEVEQPVTAYVFTGQGSQEQGMGMDLYATSPVAKE 1699
Query: 489 TIEKLQAVLKPK-GVDVKRIITDTNPKMFDNILNSFVG 525
++ + G + I+ + NPK G
Sbjct: 1700 VWDRADKHFRENYGFSIIDIVKN-NPKELTVHFGGPRG 1736
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 63.3 bits (155), Expect = 8e-11
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 39/198 (19%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITD-----------T 511
F F G GSQ GMG L E E++ L + II +
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDAL---SEKLSDIIFEGPADVLTLTANA 65
Query: 512 NPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGE---LGCAYADGCFTVEQ 568
P + V +A I++ + + + + GHS+GE L A G F++
Sbjct: 66 QPALM------AVSMAVIRV-MEQLGLNVEKKVKFVAGHSLGEYSALCAA---GTFSLTD 115
Query: 569 TILAAYYRGLA---SVETEFIRGAMAAV-GLGYKDLRSRC-----PPEIEVACHNSPDSS 619
T RG A +V G+MAA+ GL KD+ C ++A N
Sbjct: 116 TARLLRIRGNAMQAAVAVG--EGSMAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQI 173
Query: 620 TISGPEENVKKFVAELQA 637
ISG + V+ V
Sbjct: 174 VISGEAKAVETAVEVASQ 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 3e-09
Identities = 100/679 (14%), Positives = 177/679 (26%), Gaps = 247/679 (36%)
Query: 268 KSKDAKRV--YARVVHAKTNCD-----GYKEQGITYPSGAL---QQRLLEDFYSECEVDP 317
+ D K V + + +K D G L Q+ +++ F E V
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLR 88
Query: 318 KNLAWI-EAHGTGTK---------------------------VGDPEEVQALENVFCPGR 349
N ++ T + V + L R
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 350 TTPLLI-----GSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNI-NFKSPRKDIPSFH 403
++ GS K+ + A VC KV M+ I N+ N SP +
Sbjct: 149 PAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---- 199
Query: 404 NGKIQLESRPLDAEYVRLFHEIHSDDIAGHMYRGYTILSANSDK-KIR---SSTHYPGDT 459
L+ L ++I + + + L +S + ++R S Y
Sbjct: 200 ---EMLQK---------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--- 244
Query: 460 RPLWFVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDV--KRIITDTNPKMFD 517
L L VL +V + F+
Sbjct: 245 NCL-----------------L---------------VLL----NVQNAKAW-----NAFN 263
Query: 518 N---ILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAYADGCFTVEQT--ILA 572
IL + + D L A T + HS+ T ++ +L
Sbjct: 264 LSCKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMT----------LTPDEVKSLLL 308
Query: 573 AYYRGLASVETEFIRGAMAAVGLGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFV 632
Y + +DL P E +P +S +
Sbjct: 309 KY------------------LDCRPQDL----PRE---VLTTNP--RRLSI--------I 333
Query: 633 AELQADNIFARTINVA--NTEKHAP-LKQCRAQRPPAPWLTDDIRACMKA----RDRAHV 685
AE D + A N N +K ++ P + R
Sbjct: 334 AESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRLSVFPP--SA 385
Query: 686 KFQPKPRSTKWL-STSNTEANWTTHLAKYSSAEYHTNNLLS--PVLFEETSRHIQKNAIT 742
S W + L KYS E P ++ E ++
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---- 441
Query: 743 LEIAPHGLLQAILRRSLPKTVTNVSLTQRENANSVLYLLQALGKLYESGVHPHLAN---- 798
E A H + + ++PKT + L Y +G + HL N
Sbjct: 442 -EYALHRSI--VDHYNIPKTFDSDDLIPPYLDQ---YFYSHIG--H------HLKNIEHP 487
Query: 799 ----LYPKI--DFPVSRGTPMISPLVRWEHSEDWYVTTYRMQEKLK--SGERTVVVSLKD 850
L+ + DF R+ +++K++ S S+ +
Sbjct: 488 ERMTLFRMVFLDF-------------RF------------LEQKIRHDSTAWNASGSILN 522
Query: 851 D--EMEFVSGHMIDGRNLF 867
+++F ++ D +
Sbjct: 523 TLQQLKFYKPYICDNDPKY 541
Score = 52.5 bits (125), Expect = 5e-07
Identities = 62/392 (15%), Positives = 122/392 (31%), Gaps = 107/392 (27%)
Query: 535 DILRALNITP---DHIIGHSVGELGCAYADGCFTVEQTILAAYYRGLASVETEFIRGAMA 591
D+ +++ ++ DHII G +Q + F+ +
Sbjct: 40 DMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQK--------FVEEVLR 88
Query: 592 AVGLGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQADN-IFARTINVANT 650
YK L S I+ P S + L DN +FA+ NV+
Sbjct: 89 I---NYKFLMSP----IKTEQ-RQP-----SMMTRMYIEQRDRLYNDNQVFAK-YNVSRL 134
Query: 651 EKHAPLKQCRAQRPPAPWLT-DDIRACMK-------ARDRAHVKFQPK-PRSTKWLSTSN 701
+ + L+Q + PA + D + K K Q K WL+ N
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---KVQCKMDFKIFWLNLKN 191
Query: 702 TE---------ANWTTHLAK-YSSAEYHTNNLLSPVLFEETSRHIQKNAITLEIAPHGLL 751
+ ++S H++N+ + + + + + + LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAEL-RRLLKSKPYENCLL 248
Query: 752 QAILR---------------RSLPKTVT--NVSLTQRENANSVLYLLQALGKLYESGVHP 794
+L + L +T +T +A + ++ +L +
Sbjct: 249 --VLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPD 301
Query: 795 HLANLYPKI------DFP--VSRGTP----MISPLV-----RWEHSEDW-YVTTYRMQEK 836
+ +L K D P V P +I+ + W++ W +V ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTI 358
Query: 837 LKSGERTVVVSLKDDEMEFVSGHMIDGRNLFP 868
++S + L+ E M D ++FP
Sbjct: 359 IESS----LNVLEPAEYR----KMFDRLSVFP 382
Score = 51.0 bits (121), Expect = 2e-06
Identities = 64/503 (12%), Positives = 125/503 (24%), Gaps = 144/503 (28%)
Query: 16 KELALKAGRRLARPAPGDEICITGIAG----VFPDSTDVRDFG--EKLNNKV-------- 61
L L+ RPA + I G+ G + K++ K+
Sbjct: 136 PYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNC 192
Query: 62 -----------DLISDDDRRWKLGKEHPE-IPQRTGKLYEVNKFDAAFFGVHFKQA---- 105
L+ D W +H I R + + ++
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVL 250
Query: 106 ---------HTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEK----- 151
+ + C+I+L ++ V D + S + + E
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLL 308
Query: 152 TWF--------YEKLQINGFGITGCSRAML---ANRVSYWLGVNGPSYTVDSACSSSLYA 200
+ E L N ++ + + W VN + + SSL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVN--CDKLTTIIESSLNV 365
Query: 201 LE-----HAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSPDGRCKSFDEAANGY 255
LE + + + F ++ P L ++ D N
Sbjct: 366 LEPAEYRKMFDRL------SVFPPSAHI---PT-----ILLSLIWFDVIKSDVMVVVNKL 411
Query: 256 CR---------SEAVCIMYLQKSKDAKRVYARVVHAK------------------TNCDG 288
+ + I + K +H D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 289 YKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPG 348
Y I + ++ + +D ++E K+ G
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFLEQ-----KI-----RHDSTAWNASG 518
Query: 349 RTTPLL--IGSVKSNIGHSEPASG--VCSVTKVILAMENGIIPPNINFKSPRKDIPSFHN 404
L + K I ++P V ++ + +E +I S D+
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI------CSKYTDL----- 567
Query: 405 GKIQLESRPLDAEYVRLFHEIHS 427
+++ L AE +F E H
Sbjct: 568 --LRIA---LMAEDEAIFEEAHK 585
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 39.2 bits (92), Expect = 0.005
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
A V LG+ G ++ ++ ACSS+ + L+ A + G +A +
Sbjct: 157 AIEVQNALGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLM 201
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 35.9 bits (82), Expect = 0.050
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 834 QEKLKSGERTVVVS---LKDDEMEFVSGHMIDGRNLFPATGYL 873
+E K T+VV + D GH++DG L + Y
Sbjct: 14 EETTKPLGATLVVETDISRKDVNGLARGHLVDGIPLCTPSFYA 56
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 35.1 bits (82), Expect = 0.088
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGV 238
P+ T++ C S L ++ A + I G + VGG N+ + PY+ + AR G
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYL-VPSARYGA 137
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 34.7 bits (81), Expect = 0.12
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGV 238
PSYTV+ C S L +++ A +SI G + GG N+ PY+ + AR G
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYI-VPTARFGS 135
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 34.4 bits (80), Expect = 0.15
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGVLSPDGR 244
TV+ C S L A+ A ++I G G ++ PY + G + +
Sbjct: 81 AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYA-VPKPERGFPTGNLV 139
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 34.4 bits (80), Expect = 0.15
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 174 ANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A V G+ +Y + + C +YAL A+ + G G
Sbjct: 90 AALVQARFGLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVG 136
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 34.3 bits (80), Expect = 0.16
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGV 238
YT+ CSS + A+ A I+ G GG + PY L+ R G
Sbjct: 83 TGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYA-LKQHRWGQ 135
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium; 1.79A {Legionella pneumophila subsp}
Length = 265
Score = 32.6 bits (75), Expect = 0.46
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 620 TISGPEENVKKFVAELQADNIFAR-TINVANTEKHA 654
+G E + F L++D+ FA K+
Sbjct: 59 GFAGNREQMNVFYDYLRSDSRFADLHFKETYDNKNP 94
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 32.5 bits (75), Expect = 0.67
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
+ TV C SS+ AL A ++I G+ + VGG
Sbjct: 86 AAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 32.1 bits (74), Expect = 0.73
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
P+ TV+ C SS+ AL A + I G VGG
Sbjct: 83 PAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGG 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.0
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 21/45 (46%)
Query: 489 TIEKLQAVLK---PKGVDVKRIITDTNPKMFDNILNSFVGIAAIQ 530
++KLQA LK D+ P + + A ++
Sbjct: 21 ALKKLQASLKLYAD----------DSAPAL---AIK-----ATME 47
Score = 29.5 bits (65), Expect = 2.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 781 LQALGKLYESGVHPHLA 797
LQA KLY P LA
Sbjct: 25 LQASLKLYADDSAPALA 41
Score = 28.8 bits (63), Expect = 4.8
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 22/49 (44%)
Query: 444 NSDKKIRSSTH-YPGDTRPLWFVFSGMGSQWDGMGTELMEIPIFAATIE 491
+ KK+++S Y D+ P + I AT+E
Sbjct: 20 QALKKLQASLKLYADDSAP--------------------ALAI-KATME 47
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 31.1 bits (71), Expect = 1.4
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 533 LVDILRALNITPDHIIGHSVG-----ELGCAYADGCFTVEQTILAAYYRGLASVETEFIR 587
L IL + G+S+G + IL + G+ + R
Sbjct: 73 LDRILDKYKDKSITLFGYSMGGRVALYYAINGHIP---ISNLILESTSPGIKEEANQLER 129
Query: 588 GAMAA 592
+
Sbjct: 130 RLVDD 134
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 31.1 bits (70), Expect = 1.4
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
++ I + HS+G
Sbjct: 100 ILMIFEHFKFQSYLLCVHSIG 120
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 31.3 bits (72), Expect = 1.4
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
P ++ CSS L A+ I+ G + G
Sbjct: 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 31.4 bits (72), Expect = 1.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
TV+ CSS L A+ +I+ G + G
Sbjct: 110 AVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 144
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 31.3 bits (72), Expect = 1.5
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
AN + LG S +ACS +Y++ A + ++ G + V G
Sbjct: 91 ANMLQERLGTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVG 138
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 30.9 bits (71), Expect = 1.8
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGV 238
++ ++ C S L A+ + I G + GG ++ + P+ R GV
Sbjct: 81 TAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH--CAHLRGGV 132
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 30.6 bits (70), Expect = 2.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A +V +G ++ + +ACS +YAL A K + G V G
Sbjct: 92 ACQVQGAIGATEAFAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIG 139
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 30.6 bits (70), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
P TV+ CSS L A+ IR+G + G
Sbjct: 109 PLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACG 143
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 30.5 bits (69), Expect = 2.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
L +LR L + ++G S+G
Sbjct: 136 LAPVLRELAPGAEFVVGMSLG 156
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR
biosynthesis; 2.00A {Streptococcus mutans}
Length = 238
Score = 30.1 bits (68), Expect = 2.7
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 38/106 (35%)
Query: 496 VLKPKGVDVKRIITD----TNPKMFDNILNSF-------------VGIAAIQIGL----- 533
L+ DV + + KM + NS VG+AA Q+ +
Sbjct: 60 TLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRII 119
Query: 534 -VDILRALNITPD---------------HIIGHSVGELGCAYADGC 563
V I + + II HSV + A +GC
Sbjct: 120 AVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGC 165
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 30.3 bits (69), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
+ +IL AL++ IIGHSV
Sbjct: 88 VEEILVALDLVNVSIIGHSVS 108
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 30.2 bits (69), Expect = 2.8
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A RV+ LG V ++ + +A + +Y L I G ++A + G
Sbjct: 91 APRVAARLGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVG 138
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 30.1 bits (69), Expect = 3.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A V L ++ + +ACS +YAL+ A I+ G V G
Sbjct: 90 ACLVQAQLKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIG 137
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 29.9 bits (68), Expect = 3.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
++D+ AL++ +GHSVG
Sbjct: 80 VLDVCEALDLKETVFVGHSVG 100
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 29.9 bits (68), Expect = 3.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
L L A I ++GH++G
Sbjct: 72 LHQALVAAGIEHYAVVGHALG 92
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 29.1 bits (65), Expect = 4.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 768 LTQRENANSVLYLLQALGKLYES-GVHPHLANLYPKIDF 805
+ + +N V+Y + AL + P L + F
Sbjct: 96 IYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSF 134
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 29.4 bits (67), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A +V L + S+ + +AC+ +YAL A + IR G A V G
Sbjct: 98 ACQVQGLLNIDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIG 145
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 102
Score = 27.9 bits (62), Expect = 4.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 594 GLGYKDLRSRCPPEIEVACHNSPDSSTISGPEENVKKFVAELQA 637
G + + P ++ + D T+ GP E+V +++
Sbjct: 46 GQNLAKITQQMP-KVHIEFTEGEDKITLEGPTEDVSVAQEQIEG 88
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 29.2 bits (66), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
L+D+ L I H+IG S+G
Sbjct: 124 LLDVFDNLGIEKSHMIGLSLG 144
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 29.4 bits (67), Expect = 5.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 186 PSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGC-NLCLHPYVSLQFARLGV 238
P+++ C S L A+ A +SI G + GG N+ P+ L + R GV
Sbjct: 84 PAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH--LAYLRTGV 135
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 28.9 bits (65), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
LVD L AL I IGHS+G
Sbjct: 71 LVDTLDALQIDKATFIGHSMG 91
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 29.3 bits (66), Expect = 6.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
+ ++R L ++GHS+G
Sbjct: 124 IAGLIRTLARGHAILVGHSLG 144
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 29.1 bits (66), Expect = 6.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
++ ++ L I + G S+G
Sbjct: 82 VLGLMDTLKIARANFCGLSMG 102
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli}
PDB: 3fi1_A
Length = 388
Score = 29.1 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 787 LYESGVHPHLANLYPKIDFPVSRGTPMISPLVRWEHS 823
+ +SGVH LA + P+ + SP R EH
Sbjct: 219 VLKSGVHATLAGVIVGFFIPL-KEKHGRSPAKRLEHV 254
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 29.1 bits (66), Expect = 6.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
++++L AL + H +G S+G
Sbjct: 83 VLELLDALEVRRAHFLGLSLG 103
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A
{Helicobacter pylori} PDB: 3c5q_A*
Length = 425
Score = 29.0 bits (66), Expect = 6.5
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 21/71 (29%)
Query: 497 LKPKGVDVKRI---ITDTNP--KMFDNILNSFVGIAAIQIGLVDILRALNITPDHI-IGH 550
L+P V I + D P + + + L AL I +G
Sbjct: 197 LEPVSVHF-HIGSQLLDLEPIIEASQKVAK-----------IAKSLIALGIDLRFFDVG- 243
Query: 551 SVGELGCAYAD 561
G +G +Y +
Sbjct: 244 --GGIGVSYEN 252
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 28.8 bits (64), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 768 LTQRENANSVLYLLQALGKLYES-GVHPHLANLYPKIDF 805
+ + +N V+Y + AL + P L + F
Sbjct: 140 IYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSF 178
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 28.9 bits (64), Expect = 6.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 368 ASGVCSVT-----KVILAMENGIIPPNINFKSPRKDIPSF 402
+GV VT ++I + P + F +P +P
Sbjct: 168 IAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 207
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 28.7 bits (64), Expect = 7.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
L ++ AL + P +I S+
Sbjct: 93 LAAVVDALELGPPVVISPSLS 113
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 29.0 bits (64), Expect = 7.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
+ IL+ LN + +G G
Sbjct: 101 IPCILQYLNFSTIIGVGVGAG 121
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 29.0 bits (66), Expect = 7.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 174 ANRVSYWLG-VNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGG 220
A ++ LG P++ V +AC+ YAL A + ++ G A V G
Sbjct: 91 ACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVG 138
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct
genomics, riken spring-8 center; 1.99A {Aquifex
aeolicus}
Length = 420
Score = 29.0 bits (66), Expect = 8.0
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 497 LKPKGVDVKRI---ITDTNPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHI-IGHSV 552
L+ G+ I I D +P + + L + L ++ IG
Sbjct: 196 LEIVGIHC-HIGSQILDISP---------YREAVEKVVSLYESLTQKGFDIKYLDIG--- 242
Query: 553 GELGCAYADG 562
G LG Y
Sbjct: 243 GGLGIKYKPE 252
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center
for structural genomics of infectious diseases, CSGI;
1.80A {Vibrio cholerae}
Length = 441
Score = 29.0 bits (66), Expect = 8.0
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 497 LKPKGVDVKRI---ITDTNP--KMFDNILNSFVGIAAIQIGLVDILRALNITPDHI-IGH 550
L G+D I +T P D +L L+D L+A I H+ +G
Sbjct: 216 LDVHGIDC-HIGSQLTALAPFIDATDRLLA-----------LIDSLKAEGIHIRHLDVG- 262
Query: 551 SVGELGCAYAD 561
G LG Y D
Sbjct: 263 --GGLGVVYRD 271
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 28.9 bits (65), Expect = 8.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 533 LVDILRALNITPDHIIGHSVG 553
L +L I IG S+G
Sbjct: 87 LEALLAQEGIERFVAIGTSLG 107
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 28.6 bits (65), Expect = 8.5
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 174 ANRVSYWLGV-NGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFV 218
A V+ LG + + + + YAL A IR G V
Sbjct: 101 APMVAASLGAKGILGFDLSAGAAGFGYALGAAADMIRGGGAATMLV 146
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis}
PDB: 2os1_A* 3g6n_A 3cmd_A
Length = 188
Score = 28.4 bits (64), Expect = 9.0
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 33/101 (32%)
Query: 496 VLKPKGVDVKRIITDTNPK----MFDNILNSF-------------VGIAAIQIGL----- 533
L+ +V IT+ + + M + NS VG+AA Q+ +
Sbjct: 14 TLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRII 73
Query: 534 -VDILRALNITPDH----------IIGHSVGELGCAYADGC 563
V + I+ HSV ++ +GC
Sbjct: 74 AVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGC 114
>2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A
{Clostridium botulinum}
Length = 444
Score = 28.6 bits (63), Expect = 10.0
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 501 GVDVKRIITDTNPKMFDNILNSFVGIAAIQIGLVDILRALNITPDHIIGHSVGELGCAY- 559
G+DV+ I ++ + L + IA L +N T ++ + +
Sbjct: 283 GLDVEIIPQIERSQLREKALGHYKDIA-------KRLNNINKTIPSSWISNIDKYKKIFS 335
Query: 560 --------ADGCFTVEQTILAAYYRGLASVETEF 585
G F V + Y L +V +E
Sbjct: 336 EKYNFDKDNTGNFVVNIDKFNSLYSDLTNVMSEV 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,935,008
Number of extensions: 878503
Number of successful extensions: 2449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2285
Number of HSP's successfully gapped: 133
Length of query: 883
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 781
Effective length of database: 3,853,851
Effective search space: 3009857631
Effective search space used: 3009857631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)