RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1120
(883 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 171 bits (433), Expect = 9e-49
Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 21/252 (8%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TG+ + P F + + R +P R
Sbjct: 4 VVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFD-----ASALPVRIAAEV----DV 54
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
+ K+ +D + L A+ DAG+ P+ L + G +G E
Sbjct: 55 DPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEA 114
Query: 155 YEKL-------QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
++ +I+ F I M + ++ G GPS TV +AC++ AL A +
Sbjct: 115 QSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRM 174
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVC 262
I+ G + GG + P FA + LS P+ + F + +G+ E
Sbjct: 175 IQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAG 234
Query: 263 IMYLQKSKDAKR 274
++ L+ + AK+
Sbjct: 235 VLVLEAYEHAKK 246
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 152 bits (384), Expect = 4e-42
Identities = 45/252 (17%), Positives = 91/252 (36%), Gaps = 20/252 (7%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TG+ + P V + L IS D + K + K
Sbjct: 4 VVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDH--------FDTSAYATKFAGLVKDF 55
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
+ K+ MD + + +A+ D+G+ ++ G IG+
Sbjct: 56 NCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEE 115
Query: 155 YEKL-------QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
+I+ F + M+A ++ G+ GPS ++ +A +S ++ + HA +
Sbjct: 116 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARI 175
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVC 262
I G + GG P F LS P + +D+ +G+ +
Sbjct: 176 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 235
Query: 263 IMYLQKSKDAKR 274
++ L++ + AK+
Sbjct: 236 MLVLEEYEHAKK 247
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 145 bits (365), Expect = 1e-39
Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 20/252 (7%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TG+ + P ++D+ + L + I R + + K
Sbjct: 4 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFD--------ASDQACRFGGEVKDF 55
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
A + K+A MD C + + +A+ DA + L + GV IG +
Sbjct: 56 DATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLED 115
Query: 155 YEKL-------QINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
+ + + + F I M + + LG GP+ +AC++ A+ A++
Sbjct: 116 QQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRL 175
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS-----PDGRCKSFDEAANGYCRSEAVC 262
+++G+ A GG + P FA LS P + FD+ +G+ E
Sbjct: 176 VQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 235
Query: 263 IMYLQKSKDAKR 274
I+ L++ + A
Sbjct: 236 ILILEELESALA 247
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 145 bits (365), Expect = 2e-39
Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ +TG P +F L I + + + ++
Sbjct: 11 VVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV- 69
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
K + D L EAV A ++ ++L + GV + + ++
Sbjct: 70 -------KKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIED 122
Query: 155 YEKLQ-------INGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKS 207
+ + M + V+ G NG ++++ACSSS A+ A++S
Sbjct: 123 QVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRS 182
Query: 208 IRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS----PDGRCKSFDEAANGYCRSEAVCI 263
I+ G + VGG + P+ F L LS P FD+ NG+ E +
Sbjct: 183 IKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGM 242
Query: 264 MYLQKSKDAKR 274
+ L+ + A++
Sbjct: 243 LVLESLEHAEK 253
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 114 bits (285), Expect = 8e-29
Identities = 44/266 (16%), Positives = 87/266 (32%), Gaps = 23/266 (8%)
Query: 37 ITGIAGVFPDSTDVRDFGEKLNNKVDLISD-DDRRWKLGKEHPEIPQRTGKLY------- 88
+TG+ V P V +L + I K+ E T
Sbjct: 5 VTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAF 64
Query: 89 -----EVNKFDAAFFGVHFKQAHTMDPMCRI----ILEKTYEAVIDAGINPKSLRGSKTG 139
+FD A + A+ + + + + + +
Sbjct: 65 VPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGI 124
Query: 140 VFIGACFSESEKTWFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLY 199
I ++ +++ F I M + VS G GP++ +AC++ +
Sbjct: 125 GSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAH 184
Query: 200 ALEHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLS------PDGRCKSFDEAAN 253
++ A + I+ G + GG + F+R LS P + FD +
Sbjct: 185 SIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRD 244
Query: 254 GYCRSEAVCIMYLQKSKDAKRVYARV 279
G+ E ++ L++ + AKR A++
Sbjct: 245 GFVIGEGSGVIVLEEYEHAKRRGAKI 270
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 104 bits (259), Expect = 2e-25
Identities = 35/252 (13%), Positives = 87/252 (34%), Gaps = 13/252 (5%)
Query: 37 ITGIAGVFPDSTDVRDFGEKLNNKVDLIS----DDDRRWKLGKEHPEIPQRTGKLYEVNK 92
ITG+ V + ++ L I+ D + TG +
Sbjct: 6 ITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVV 65
Query: 93 FDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKT 152
+ ++ + + + Y+ G+ S GS GA +
Sbjct: 66 RFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRG 125
Query: 153 WFYEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGH 212
+ + +T + ++ ++ ++G +Y++ SAC++S + + +A + I+ G
Sbjct: 126 L----KAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 181
Query: 213 CNAAFVGGCNLCLHPYVSLQFA-----RLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQ 267
+ F GG A +P+ +++D +G+ + ++ ++
Sbjct: 182 QDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVE 241
Query: 268 KSKDAKRVYARV 279
+ + A A +
Sbjct: 242 ELEHALARGAHI 253
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 101 bits (253), Expect = 3e-25
Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 7/182 (3%)
Query: 241 PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYAR---VVHAKTNCDGYKEQGITYP 297
P+ + FD +G+ +E + L+ A AR +
Sbjct: 3 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA 62
Query: 298 SGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGS 357
G + E D ++ +I AHG+GT+ D E A + + S
Sbjct: 63 DGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGE-HARRTPVSS 121
Query: 358 VKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIPSFHNGKIQLESRPLDAE 417
+KS +GHS A G + +LA+E+G++PP N ++ P + LE+R
Sbjct: 122 IKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSD---PECDLDYVPLEARERKLR 178
Query: 418 YV 419
V
Sbjct: 179 SV 180
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 102 bits (254), Expect = 3e-25
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 21/220 (9%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ ITG+ P R F E L + FD
Sbjct: 3 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQV--------AAEADFD 54
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
G ++ MD + + EA +G++P +L ++ GV +G+ + +
Sbjct: 55 PVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLER 114
Query: 155 YEKLQ-------------INGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYAL 201
L ++ +++ V++ +G GP V + C+S L ++
Sbjct: 115 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 174
Query: 202 EHAYKSIRDGHCNAAFVGGCNLCLHPYVSLQFARLGVLSP 241
+A ++I +G + F G + + P V F + +
Sbjct: 175 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTA 214
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 94.5 bits (234), Expect = 5e-23
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 274 RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVG 333
++YA +V + D Y +GA + + + ++ + ++ AHGT T G
Sbjct: 1 KIYAELVGFGMSSDAYH-MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAG 59
Query: 334 DPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
D E QA++ +F + L+ S KS GH A+G ILA+ + +PP IN
Sbjct: 60 DKAEAQAVKTIFGEAASRV-LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLD 118
Query: 394 SPRKDIPSFHN 404
+P +
Sbjct: 119 NPDEGCDLDFV 129
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 93.3 bits (231), Expect = 1e-22
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
Query: 274 RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVG 333
++Y +V CD Y P G R + + + P+ +++I AHGT T
Sbjct: 1 KIYGEMVGYAMTCDAYH-ITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPAN 59
Query: 334 DPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
D E +A++ + + S KS GH SG ++A+ +PP IN +
Sbjct: 60 DVTETRAIKQALGN-HAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLE 118
Query: 394 SPRKDIPSFHNGKIQLESRPLDAEYV 419
+P + + +SR L +
Sbjct: 119 NPDPECDLDYV---PGQSRALIVDVA 141
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 90.2 bits (223), Expect = 1e-21
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 276 YARVVHAKTNCDGYKEQGITYPS--GALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVG 333
YA + + D + IT P G + + + P + ++ AH T T +G
Sbjct: 1 YAELCGYGMSGDAH---HITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIG 57
Query: 334 DPEEVQALENVF-CPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINF 392
D E +A++ VF + L S K GH A+G ILA+ +G+ P +N
Sbjct: 58 DAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNV 117
Query: 393 KSPRKDIP 400
K+P
Sbjct: 118 KNPDPIFD 125
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 89.8 bits (222), Expect = 2e-21
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 274 RVYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVG 333
R+YA +V + D + +P G + + + P+ + +I AHGT T VG
Sbjct: 1 RIYAELVGFGRSADAHH-ITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVG 59
Query: 334 DPEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFK 393
D EV A++ VF L++ S KS IGH A+G + A+ +G+IPP IN +
Sbjct: 60 DRAEVLAIKRVFGD-HAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLE 118
Query: 394 SPRKDIPSFH 403
P ++
Sbjct: 119 DPDPELDLDF 128
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 85.9 bits (211), Expect = 1e-19
Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 2/206 (0%)
Query: 35 ICITGIAGVFPDSTDVRDFGEKLNNKVDLISDDDRRWKLGKEHPEIPQRTGKLYEVNKFD 94
+ ITG+ V P+ + + + + + R + + + + + + +
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTR-FDVSRYPATLAGQIDDFHAPDHIP 60
Query: 95 AAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRGSKTGVFIGACFSESEKTWF 154
L+ + + E K W
Sbjct: 61 GRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWS 120
Query: 155 YEKLQINGFGITGCSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCN 214
++ + A+ ++S G+ GPS + + + L AL HA ++IR G
Sbjct: 121 EGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TP 179
Query: 215 AAFVGGCNLCLHPYVSLQFARLGVLS 240
GG + L P+ + G +S
Sbjct: 180 LVVSGGVDSALDPWGWVSQIASGRIS 205
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 81.4 bits (200), Expect = 1e-18
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 276 YARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDP 335
YA +V DG + PSG R ++ + ++ +HGT T VGD
Sbjct: 1 YAEIVGYGATSDGA---DMVAPSGEGAVRCMKMAMHGVDTPID---YLNSHGTSTPVGDV 54
Query: 336 EEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSP 395
+E+ A+ VF I + K+ GHS A+GV +L +E+G I P+IN +
Sbjct: 55 KELAAIREVFGD---KSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEEL 111
Query: 396 RKDIPSFHNGKIQLESRPLDAEYV 419
+ + I E+ + V
Sbjct: 112 DEQAAGLN---IVTETTDRELTTV 132
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 80.3 bits (197), Expect = 3e-17
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 464 FVFSGMGSQWDGMGTELMEIPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNSF 523
V G G+Q G T+ + +P A + + G+D+ T + + +
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQ 61
Query: 524 VGIAAIQIGLVDILRA---------LNITPDHIIGHSVGELGCAYADGCFT 565
+ A I L TP + GHSVGE+ A G
Sbjct: 62 PLLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLD 112
Score = 37.2 bits (85), Expect = 0.006
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 706 WTTHLAKYSSAEYHTNNLLSPVLFEETSRHIQKNAIT--LEIAPHGLLQAILRRSLPKTV 763
+ + + +PV ++ ++ +T +E+ P G L + +R+LP
Sbjct: 173 GRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVK 232
Query: 764 TNVSLTQRENANSVLYLL 781
T ++L ++ ++ L+
Sbjct: 233 T-LALKTPDDLDAARELV 249
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 75.4 bits (184), Expect = 5e-16
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 4/161 (2%)
Query: 241 PDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAK-TNCDGYKEQGITYPSG 299
PD FDE A GY E I+ L+ S A+ + + C +
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRP 61
Query: 300 ALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQALENVFCPGRTTPLLIGSVK 359
A +R + ++ P+++ + A G G D E +A+ VF K
Sbjct: 62 AGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPV---TVPK 118
Query: 360 SNIGHSEPASGVCSVTKVILAMENGIIPPNINFKSPRKDIP 400
+ G G V ++++ G+I P S ++
Sbjct: 119 TTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYG 159
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 73.7 bits (180), Expect = 4e-15
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 464 FVFSGMGSQWDGMGTELME-IPIFAATIEKLQAVLKPKGVDVKRIITDTNPKMFDNILNS 522
FVF G GSQ GM ++ PI T + A L G D+ + + + +
Sbjct: 4 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQT 60
Query: 523 FVGIAAIQIGLVDILRAL-NITPDHIIGHSVGELGCAYADGCFTVEQTILAAYYRG 577
+ + L + + P + GHS+GE G + RG
Sbjct: 61 QPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRG 116
Score = 41.7 bits (97), Expect = 2e-04
Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 7/128 (5%)
Query: 653 HAPLKQCRAQRPPAPWLTDDIRACMKARDRAHVKFQPKPRSTKWLSTSNTEANWTTHLAK 712
K + P P ++ K + ++ + + +
Sbjct: 113 EMRGKFMQEAVPEVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIR 172
Query: 713 YSSAEYHTNNLLSPVLFEETSRHIQKNAIT--LEIAPHGLLQAILRRSLPKTVTNVSLTQ 770
+ L +PV + ++ ++ + E+ P +L + +R + T+T +L +
Sbjct: 173 ----DALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVD-TLTASALNE 227
Query: 771 RENANSVL 778
+ L
Sbjct: 228 PSAMAAAL 235
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 66.7 bits (162), Expect = 2e-13
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 275 VYARVVHAKTNCDGYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGD 334
+ A VV CD Y +P G + ++ E E+ P+ +A++ AHGT T +
Sbjct: 2 ILAEVVGYGNTCDAYH-MTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANE 60
Query: 335 PEEVQALENVFCPGRTTPLLIGSVKSNIGHSEPASGVCSVTKVILAMENGIIPPNINFKS 394
E A+ V G+ P + S KS GH A+G I AM + +P
Sbjct: 61 KGESGAIVAVL--GKEVP--VSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSE 116
Query: 395 PRKDIP 400
I
Sbjct: 117 VSDYIE 122
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 46.7 bits (111), Expect = 1e-07
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 588 GAMAAV-GLGYKDLRSRCP-PEIEVACHNSPDSSTISGPEENVKKFVAELQADNIFAR 643
M+A+ G + + + A N +G E + +
Sbjct: 2 TGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVV 59
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 39.1 bits (91), Expect = 1e-04
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 588 GAMAAV-GLGYKDLRSRCP-----PEIEVACHNSPDSSTISGPEENVKKFVAELQADNI 640
GAMAA+ GL + C + NSP I+G +E V++ A +A
Sbjct: 3 GAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGA 61
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific
adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 29.8 bits (67), Expect = 0.24
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 765 NVSLTQRENANSVLYLLQALGKLYESGVHPHLANLYPK 802
N+ LT+ + N+VL ++ G +Y G P + +L K
Sbjct: 28 NIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDK 65
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.7 bits (59), Expect = 4.5
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 339 QALENVFCPGRTTP------LLIGSVKSNIGHSEP----ASGVCSVT-----KVILAMEN 383
+A+E PGR+ + + S S ++ +GV VT ++I
Sbjct: 31 KAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 90
Query: 384 GIIPPNINFKSPRKDIP 400
+ P + F +P +P
Sbjct: 91 DLFPTDFKFDTPVDKLP 107
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.0 bits (62), Expect = 5.3
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 84 TGKLYEVNKFDAAFFGVHFKQAHTMDPMCRIILEKTYEAVIDAGINPKSLRG 135
T + A F V +D + ++ EAV++A I + + G
Sbjct: 289 TANQRPMQHRSAPFLDVEMVNDEPLDTVYLAAVDSVEEAVVNAMIAAEDMGG 340
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus
[TaxId: 146786]}
Length = 131
Score = 26.9 bits (58), Expect = 6.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 664 PPAPWLTD-DIRACMKARDRAHVKFQPKPRSTKW 696
P LT+ D+ A H+ +PK KW
Sbjct: 102 PKMRNLTEKDLVAIA-----GHILVEPKILGDKW 130
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 27.7 bits (61), Expect = 6.4
Identities = 21/174 (12%), Positives = 44/174 (25%), Gaps = 25/174 (14%)
Query: 168 CSRAMLANRVSYWLGVNGPSYTVDSACSSSLYALEHAYKSIRDGHCNAAFVGGCNLCLHP 227
+ ++ + + + + + G + P
Sbjct: 89 QVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP 148
Query: 228 YVSLQFARLGVLSPDGRCKSFDEAANGYCRSEAVCIMYLQKSKDAKRVYARVVHAKTNCD 287
++ P G F A G ++E +L+K K D
Sbjct: 149 -------QVYKCDPAGYYCGFKATAAGVKQTE--STSFLEK------------KVKKKFD 187
Query: 288 GYKEQGITYPSGALQQRLLEDFYSECEVDPKNLAWIEAHGTGTKVGDPEEVQAL 341
EQ + L L DF E++ + + ++ E+ A
Sbjct: 188 WTFEQTVETAITCLSTVLSIDFKPS-EIE---VGVVTVENPKFRILTEAEIDAH 237
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 27.5 bits (60), Expect = 7.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 608 IEVACHNSPDSSTISGPEENVKKFVAELQADNIFARTIN 646
+A + + G +KF ELQ + I+
Sbjct: 321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFF 359
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus
[TaxId: 274]}
Length = 87
Score = 25.9 bits (57), Expect = 7.4
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 608 IEVACHNSPDSS---TISGPEENVKKFVAELQADNIFAR 643
+ N PD GP+E ++ F+ L+ AR
Sbjct: 29 LSGYAENLPDGRVEVVAEGPKEALELFLHHLKQGPRLAR 67
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein
BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 157
Score = 27.0 bits (59), Expect = 7.6
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 810 GTPMISPLVRWEHSEDWYVTTYRMQEKLKSGERTVVVS 847
G P + P+ ++ Y+ + K++ +R V
Sbjct: 31 GNPYVVPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVC 68
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 27.5 bits (60), Expect = 8.5
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 60 KVDLISDDD-RRWKLGKEHPEIPQRTGKLYE 89
KV LI D +++ K HP R L
Sbjct: 2 KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLR 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,396,212
Number of extensions: 165740
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 35
Length of query: 883
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 790
Effective length of database: 1,130,706
Effective search space: 893257740
Effective search space used: 893257740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)