BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11202
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DI37|UBCP1_DANRE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Danio rerio
GN=ublcp1 PE=2 SV=1
Length = 318
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/317 (59%), Positives = 244/317 (76%), Gaps = 1/317 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
S+++IIKW +EY +LS+ +TVL+LKQ I TGV PERQKLL LK GK D+ KL
Sbjct: 2 SVSVIIKWGGQEYSINTLSEEDTVLDLKQSIKSLTGVLPERQKLLGLKLKGKPADDNVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
D K+M+MG+ E+S+++ P + ++V+DFDIEE+ +EN++ LAKI +R
Sbjct: 62 GDLKLKPNTKIMMMGTREESLEDVLAPPPENDDVVNDFDIEEEVTEVENREENLAKIARR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
++DY+++ LN PRPGK+LLVLDIDYTLFDH+S AE G+ELMRP+LHEFLTSAY+++DI I
Sbjct: 122 VKDYKVEELNPPRPGKRLLVLDIDYTLFDHKSCAETGHELMRPFLHEFLTSAYEDFDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWI+ KMK LGVT NPNYKI F +D +AMI+VH PK GVVEVKPLGVIWGK+
Sbjct: 182 WSATSMKWIDAKMKELGVTDNPNYKITFMLDSAAMITVHTPKRGVVEVKPLGVIWGKYSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
YN NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D +
Sbjct: 242 FYNRKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNREKDKELYKLSQYLKEIAKLDDFS 301
Query: 303 ALNHRNWEKYLHAKHKE 319
LNH++WE+YL K +
Sbjct: 302 GLNHKHWERYLSKKQNQ 318
>sp|Q641F1|UBCP1_XENLA Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
laevis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/317 (58%), Positives = 242/317 (76%), Gaps = 1/317 (0%)
Query: 4 SLNLIIKWNSKEYKTS-LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L+LIIKW +E+ S LS+ +TVL+LK + TGV PER KLL LK+ GK +D KL
Sbjct: 2 TLSLIIKWGGQEFPLSALSEEDTVLDLKHSLKSLTGVLPERMKLLGLKYKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S++E P D E+V+DFDI+E+ V +EN++ LAKI +R
Sbjct: 62 GVLRLKPNTKIMMMGTREESLEEMMAPPPDNDEVVNDFDIDEEVVEVENREENLAKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
++DY++++LN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFL+SAY++YDI I
Sbjct: 122 VKDYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGQELMRPYLHEFLSSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGVT N NYKI F +D +AMI+VH P+ G+V+VKPLGVIWGK+
Sbjct: 182 WSATSMKWIEAKMKELGVTTNANYKITFMLDSAAMITVHTPRRGLVDVKPLGVIWGKYGE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++DL+
Sbjct: 242 FYSKNNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLSQYLKEIAQLDDLS 301
Query: 303 ALNHRNWEKYLHAKHKE 319
LNH++WE+YL K +
Sbjct: 302 ELNHKHWERYLAKKQGQ 318
>sp|Q28EX9|UBCP1_XENTR Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
tropicalis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/315 (60%), Positives = 241/315 (76%), Gaps = 1/315 (0%)
Query: 4 SLNLIIKWNSKEYKTS-LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L+LIIKW +E+ S LS+ +TVL+LK + TGV PER KLL LK+ GK +D KL
Sbjct: 2 TLSLIIKWGGQEFPLSALSEEDTVLDLKHSLKSLTGVLPERMKLLGLKYKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S++E P + E+V+DFDIEE+ V +EN++ LAKI +R
Sbjct: 62 GVLKLKPNTKIMMMGTREESLEEMMAPPPENDEVVNDFDIEEEVVEVENREENLAKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
++DY+I+ILN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKDYKIEILNPPREGKKLLVLDVDYTLFDHRSCAETGQELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+V+VKPLGVIWGK+
Sbjct: 182 WSATSMKWIEAKMKELGVSTNSNYKITFMLDSAAMITVHTPRRGLVDVKPLGVIWGKYGE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
YN NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++DL+
Sbjct: 242 FYNKNNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLSQYLKEIAQLDDLS 301
Query: 303 ALNHRNWEKYLHAKH 317
LNH++WE+YL K
Sbjct: 302 ELNHKHWERYLVKKQ 316
>sp|Q5ZJJ8|UBCP1_CHICK Ubiquitin-like domain-containing CTD phosphatase 1 OS=Gallus gallus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/317 (59%), Positives = 241/317 (76%), Gaps = 1/317 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
SL+LIIKW +EY TSLS+ +TVL+LKQ + TGV PERQKLL LK GK DD KL
Sbjct: 2 SLSLIIKWGGQEYTITSLSEEDTVLDLKQSLKGLTGVLPERQKLLGLKMKGKPADDDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++++DFDIEE+ V +EN++ L KI +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVINDFDIEEEVVEVENREENLLKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y+++ILN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D
Sbjct: 242 YYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKHKE 319
LNH++WE+YL K +
Sbjct: 302 ELNHKHWERYLSKKQGQ 318
>sp|Q5FWT7|UBCP1_RAT Ubiquitin-like domain-containing CTD phosphatase 1 OS=Rattus
norvegicus GN=Ublcp1 PE=2 SV=1
Length = 318
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/315 (58%), Positives = 238/315 (75%), Gaps = 1/315 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
SL +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D KL
Sbjct: 2 SLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++++DFDIE++ V +EN++ L KI +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLCPPPDNDDVINDFDIEDEVVEVENREENLLKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y++++LN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKH 317
LNH+ WE+YL K
Sbjct: 302 ELNHKYWERYLSKKQ 316
>sp|Q8BGR9|UBCP1_MOUSE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Mus musculus
GN=Ublcp1 PE=1 SV=1
Length = 318
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/315 (57%), Positives = 238/315 (75%), Gaps = 1/315 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D KL
Sbjct: 2 ALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++++DFDIE++ V +EN++ L K+ +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLCPPPDNDDVINDFDIEDEVVEVENREENLLKVSRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y++++LN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKH 317
LNH+ WE+YL K
Sbjct: 302 ELNHKYWERYLSKKQ 316
>sp|Q8WVY7|UBCP1_HUMAN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Homo sapiens
GN=UBLCP1 PE=1 SV=2
Length = 318
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/315 (58%), Positives = 238/315 (75%), Gaps = 1/315 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D KL
Sbjct: 2 ALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++V+DFDIE++ V +EN++ L KI +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y+++ILN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKH 317
LNH+ WE+YL K
Sbjct: 302 DLNHKYWERYLSKKQ 316
>sp|Q2KJD7|UBCP1_BOVIN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Bos taurus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/315 (58%), Positives = 238/315 (75%), Gaps = 1/315 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D KL
Sbjct: 2 ALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++V+DFDIE++ V +EN++ L KI +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y+++ILN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+EL +L +YL EIA ++D
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKH 317
LNH+ WE+YL K
Sbjct: 302 DLNHKYWERYLSKKQ 316
>sp|Q5R4C4|UBCP1_PONAB Ubiquitin-like domain-containing CTD phosphatase 1 OS=Pongo abelii
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 352 bits (902), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/317 (57%), Positives = 238/317 (75%), Gaps = 1/317 (0%)
Query: 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+L +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D KL
Sbjct: 2 ALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 61
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKR 122
K+M+MG+ E+S+++ P D ++V+DFDIE++ V +EN++ L KI +R
Sbjct: 62 GALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRR 121
Query: 123 IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
+++Y+++ILN PR GKKLLVLD+DYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI I
Sbjct: 122 VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 183 WSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS 242
WSAT MKWIE KMK LGV+ N NYKI F +D +AMI+VH P+ G+++VKPLGVIWGKF
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 243 LYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLT 302
Y+ NTIMFDDI RNFLMNP+NGL+IRPF +AHLNR D+ L +L +YL EIA ++D
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKGLLKLTQYLKEIAKLDDFL 301
Query: 303 ALNHRNWEKYLHAKHKE 319
LNH+ WE+YL K +
Sbjct: 302 GLNHKYWERYLSKKQGQ 318
>sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis
thaliana GN=At4g06599 PE=2 SV=1
Length = 340
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/321 (48%), Positives = 213/321 (66%), Gaps = 4/321 (1%)
Query: 3 DSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ L L +KWN KEY + ++V ELK+ I T V P+RQKLL K K+ D L
Sbjct: 22 EELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSLLL 81
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDI-EEDQVAIENKDIYLAKIDK 121
+ + K+ ++G++E I + PEIVDDF++ +E+ V +++K++ K+ +
Sbjct: 82 SSISFKPSLKMTMIGTVEDDIIVDQAES---PEIVDDFELGKEEAVDVKDKEVNKQKLRR 138
Query: 122 RIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIA 181
RI Y+I++ R GKKLLVLDIDYTLFDHRS AE +LMRPYLHEFLT+AY YDI
Sbjct: 139 RIDQYKINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIM 198
Query: 182 IWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFP 241
IWSAT MKW+E KM LGV NPNYK+ +D+ AMI+V G+ + KPLG+IW P
Sbjct: 199 IWSATSMKWVELKMTELGVLNNPNYKVTALLDHLAMITVQSDTRGIFDCKPLGLIWALLP 258
Query: 242 SLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDL 301
YNP NTIMFDD+RRNF+MNP+NGL I+PFR+AH NR +D+EL +L +YL IA + DL
Sbjct: 259 EFYNPGNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDTDQELVKLTQYLLTIAELSDL 318
Query: 302 TALNHRNWEKYLHAKHKERKR 322
++L+H WE + K R++
Sbjct: 319 SSLHHSRWESFSQDNVKRRRQ 339
>sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1271.03c PE=4 SV=1
Length = 244
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 127 QIDILNEPRPGKKLLVLDIDYTLFDHRSAA---EQGYE-----LMRPYLHEFLTSAYKNY 178
Q N +KL++LD++ TL A + YE + RP LH FL + N+
Sbjct: 12 QASSCNGATDNRKLVILDLNGTLLCRALAVRSEKSVYEASRNPIPRPGLHNFLKYIFANF 71
Query: 179 DIAIWSATGMKWIEEKMKLLGVTVNPNYK---IAFYVDYSAMISVHLPKYGVVEVKPLGV 235
+ ++S++ ++ +L +N K IA + ++ H V K L
Sbjct: 72 SVMVFSSSKPHNVQA---MLSAIMNEEQKKALIACWTRVDMKLTKHQFDRKVQTYKNLDT 128
Query: 236 IWGKF-------PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF-REAHLNRGSDRELKR 287
+W K P ++ NTI+ DD + +P N + + F ++H N D EL
Sbjct: 129 VWEKIHHDSTGKPVSWSQYNTIIVDDSKTKCAAHPYNHIAVSDFVAKSHSNIPKDIELAC 188
Query: 288 LGRYLDEIATVEDLT 302
+ RYL + +V +++
Sbjct: 189 VIRYLKHLKSVPNVS 203
>sp|Q91FG9|VF355_IIV6 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 6 GN=IIV6-355R PE=3 SV=1
Length = 182
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 150 FDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIA 209
FD ++ + RPYL FL +KN+++ IW+A + ++ + +P+ KI
Sbjct: 34 FDFKNMEDYYLICGRPYLQPFLDYLFKNFNVHIWTAASKGYASFIIEEFILKKDPSRKIN 93
Query: 210 FYV-DYSAMIS--VHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNG 266
+ D+ +S V+ + +++ L IW ++ NT + DD+ +N
Sbjct: 94 LVLFDHHCRVSKRVYKKEKASKKLEMLWTIWK--LQEFDKENTFIIDDLEEVKESQVKNC 151
Query: 267 LRIRPFREAHLNRGSDRELKRLGRYLD 293
++PF + D+EL RL L+
Sbjct: 152 FSVKPFFFMENDSEYDQELMRLKDVLN 178
>sp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105
OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1
Length = 374
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 1 MGDS-LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD 59
M DS + L +K+ K S+S TV +LK ++ T V P QKL+ GK+ +
Sbjct: 8 MADSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVET 64
Query: 60 TKLADTNATDGFKLMVMGS--LEQS----IQEASTKPLDIPEIVDDFDIEEDQVAIE 110
+ L ++ G KLM+M S L Q ++EAS +P+ + D D + V ++
Sbjct: 65 STLKQSDVGSGAKLMLMASQGLHQGEGPILKEASIRPISRTVVSDKVDQRKPSVLVD 121
>sp|Q78JW9|UBFD1_MOUSE Ubiquitin domain-containing protein UBFD1 OS=Mus musculus GN=Ubfd1
PE=1 SV=2
Length = 368
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++L I WN ++ + +T ELKQ+I TG+ P QK++ + G +P D T L +
Sbjct: 145 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVPEDKT-LRE 200
Query: 65 TNATDGFKLMVMGS 78
T G K+MV+GS
Sbjct: 201 IKVTSGAKIMVVGS 214
>sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1 OS=Homo sapiens GN=UBFD1
PE=1 SV=2
Length = 309
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++L I WN ++ +T ELKQ+I TG+ P QK++ + G +P D T L +
Sbjct: 86 VDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVPEDKT-LRE 141
Query: 65 TNATDGFKLMVMGS 78
T G K+MV+GS
Sbjct: 142 IKVTSGAKIMVVGS 155
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 138 KKLLVLDIDYTLF-----------DHRSAAEQGYELMR----------PYLHEFLTSAYK 176
KKL++LD+D TL S A++ + +R P+L EFL +K
Sbjct: 6 KKLILLDLDNTLICAEDLDTVKDKKRLSQAQKQFRTVRMEDYYDIFERPHLQEFLDYLFK 65
Query: 177 NYDIAIWSATGMKW----IEEKMKLLGVTVNPNYKI-AFYVDYSAMISVHLPKYGVVEVK 231
N+ + +W+A+ + I+ + V P+ KI F + +S KY K
Sbjct: 66 NFKVGVWTASSKDYAIFVIKNFITAPQNKVKPDRKIEIFLCSHHCNVS---KKYFKGISK 122
Query: 232 PLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRY 291
L ++ ++ + + + + DD+ + P N + ++PF N +D EL ++ +
Sbjct: 123 DLKLVTDQW-KIIDLSQVKLVDDLEKLANHQPENVIHVKPFFYDEPNSKNDTELLKVQKT 181
Query: 292 LD 293
L+
Sbjct: 182 LE 183
>sp|Q84WC6|UBP7_ARATH Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana
GN=UBP7 PE=1 SV=1
Length = 477
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 5 LNLIIKWNSKEYKT-SLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLA 63
L + +KW K +++ + S K ++ +GV PERQK++ G + DD +
Sbjct: 2 LTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMV---KGGLLKDDADWS 58
Query: 64 DTNATDGFKLMVMGSLEQSIQEASTKPL---DIPE 95
+G KLM+MG+ ++ ++ P+ D+PE
Sbjct: 59 TLGLKNGQKLMMMGTADEIVKAPEKGPVFMEDLPE 93
>sp|Q949Y0|UBP6_ARATH Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana
GN=UBP6 PE=1 SV=1
Length = 482
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 29 LKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQSIQEAST 88
K ++ TGV PERQK++ G + DD A DG KLM+MG+ ++ I +A
Sbjct: 27 FKAQLYDLTGVPPERQKIMV---KGGLLKDDGDWAAIGVKDGQKLMMMGTADE-IVKAPE 82
Query: 89 KPL----DIPE 95
K + D+PE
Sbjct: 83 KAIVFAEDLPE 93
>sp|Q10169|DSK2_SCHPO Deubiquitination-protection protein dph1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dph1 PE=4 SV=1
Length = 354
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+++L IK N ++Y ++ ++VL LK+ I + ERQ+L+ +AG++ D+ L
Sbjct: 3 NISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLI---YAGRVLKDEESL 59
Query: 63 ADTNATDGFKLMVMGSLEQSIQEAST 88
DG + ++ +L Q+ A+T
Sbjct: 60 KTYKIQDGHSIHLVKTLGQNPAAAAT 85
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 4 SLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLA 63
SLN+ IK +++ +++ +TVL+ K+ I K G+ Q+L+ ++GKI DD +
Sbjct: 2 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKDDQTVE 58
Query: 64 DTNATDGFKLMVMGS 78
+ DG + ++ S
Sbjct: 59 SYHIQDGHSVHLVKS 73
>sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes
GN=USP14 PE=3 SV=2
Length = 493
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 NLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ +KW ++++ L+ + K ++ TGV P RQK+ + G + DD +
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKV--MVKGGTLKDDD--WGN 60
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVA 108
+G L++MGS + +E S K + + D+ E+Q+A
Sbjct: 61 IKIKNGMTLLMMGSADALPEEPSAKTVFVE------DMTEEQLA 98
>sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14
PE=1 SV=3
Length = 494
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 NLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ +KW ++++ L+ + K ++ TGV P RQK+ + G + DD +
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKV--MVKGGTLKDDD--WGN 60
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVA 108
+G L++MGS + +E S K + + D+ E+Q+A
Sbjct: 61 IKIKNGMTLLMMGSADALPEEPSAKTVFVE------DMTEEQLA 98
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 25/177 (14%)
Query: 158 QGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAM 217
Q Y +RP+L FL+ K ++I I++A+ + + +L N + + + ++
Sbjct: 100 QVYVRLRPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKN-HIRHRLFREHCVC 158
Query: 218 ISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHL 277
+ +G VK L ++ G+ +P+ T++ D+ ++F NG+ I E+
Sbjct: 159 V------FGNY-VKDLTIL-GR-----DPSKTMILDNAVQSFAYQLDNGIPI----ESWF 201
Query: 278 NRGSDRELKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERG 334
+ +D EL +L +L+ I T+ R+ + L K++ R ++++++ G
Sbjct: 202 HDRNDTELLKLCSFLEAIPTLG-------RDVREILRHKYRLRDHIPFYSIIHQQEG 251
>sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14
PE=1 SV=3
Length = 493
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 6 NLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ +KW ++++ L+ + K ++ TGV P RQK+ + G + DD +
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKV--MVKGGTLKDDD--WGN 60
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIE 110
+G +++MGS + +E S K + V+D E+ A+E
Sbjct: 61 IKMKNGMTVLMMGSADALPEEPSAKTV----FVEDMTEEQLATAME 102
>sp|Q92353|UBP6_SCHPO Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp6 PE=1 SV=2
Length = 468
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 7 LIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTN 66
+ I+W K+Y + + T LK ++ T V PERQK+ + G++ DD L
Sbjct: 5 IAIRWQGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKV--IVKGGQL-KDDVLLGSVG 61
Query: 67 ATDGFKLMVMGS 78
L++MG+
Sbjct: 62 IKPNATLLMMGT 73
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 59/234 (25%)
Query: 93 IPEIVDDFD----IEEDQVAIENKDIYLAKIDKRIQDYQIDILNEPRPGKKLLVLDIDYT 148
IP +DF ++ DQ D L ++Q++Q KK L+LD+D T
Sbjct: 190 IPTTEEDFSDLTHLQPDQYHAPGYDTLLPP---KLQEFQ---------QKKCLILDLDET 237
Query: 149 L----FDHRSAAE------------QGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIE 192
L F + +A+ Y + RP + EFL + Y++ +++A+ ++
Sbjct: 238 LVHSSFKYMHSADFVLPVEIDDQVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYAN 297
Query: 193 EKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMF 252
+ T++PN I + A + Y +K L I + TI+
Sbjct: 298 PLLD----TLDPNGTIHHRLFREACYN-----YEGNYIKNLSQIGRPL------SETIIL 342
Query: 253 DDIRRNFLMNPRNGLRIRP-FREAHLNRGSDRELKRLGRYLDEIATVEDLTALN 305
D+ +++ +P++ + I F + H D EL LD I +EDL++ N
Sbjct: 343 DNSPASYIFHPQHAVPISSWFSDTH-----DNEL------LDIIPLLEDLSSGN 385
>sp|Q0IIF7|UBP14_BOVIN Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14
PE=2 SV=3
Length = 494
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 NLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ +KW ++++ L+ + K ++ TGV P RQK++ G + DD +
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV--KGGTLKDDD--WGN 60
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVA 108
+G +++MGS + +E S K + + D+ E+Q+A
Sbjct: 61 IKMKNGMTVLMMGSADALPEEPSAKTVFVE------DMTEEQLA 98
>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2
Length = 1971
Score = 33.9 bits (76), Expect = 2.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 46 LLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDD 99
LL+L HAGK+ T+L ++ V +Q ++ A+ PLD+P IV +
Sbjct: 1288 LLDLGHAGKVGVSCTRLRRLRNKTAHQIKVQHFHQQLLRNAAWAPLDLPSIVSE 1341
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 41/180 (22%)
Query: 141 LVLDIDYTLFDHRSAAE-----------------QGYELMRPYLHEFLTSAYKNYDIAIW 183
LVLD+D TL H S Q + RP+ EFL +++ I+
Sbjct: 393 LVLDLDETLV-HCSTEPLEQPHLTFPVFFNNTEYQVFAKKRPFFEEFLHKVSDIFEVIIF 451
Query: 184 SATGMKWIEEKMKLLGVTVNPNYKIAF--YVDYSAMISVHLPKYGVVEVKPLGVIWGKFP 241
+A+ + KLL + ++PN KI + Y D + + +K L V+
Sbjct: 452 TASQEVYAN---KLLNM-IDPNNKIKYRLYRDSCVYVDGNY-------LKDLSVLGRDLK 500
Query: 242 SLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDL 301
+ ++ D+ ++F NG+ I E+ +D+EL +L +L+ + VED+
Sbjct: 501 QV------VIIDNSPQSFGFQVDNGIPI----ESWFEDENDKELLQLVPFLESLTNVEDV 550
>sp|B5DFC8|EIF3C_RAT Eukaryotic translation initiation factor 3 subunit C OS=Rattus
norvegicus GN=Eif3c PE=2 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 285 LKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERGGEEEGEEEED 344
++R+ RYL+E T E++ + R + LH +K +A +R + E + E ++ E+
Sbjct: 481 IERVQRYLEEKGTTEEICQIYLR---RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN 537
Query: 345 EGEGSEI 351
EGE S +
Sbjct: 538 EGEDSAV 544
>sp|Q043V9|RNZ_LACGA Ribonuclease Z OS=Lactobacillus gasseri (strain ATCC 33323 / DSM
20243) GN=rnz PE=3 SV=1
Length = 309
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 69 DGFKLMVMG--SLEQSIQ---EASTKPLDIPEIVDDFDIEEDQVAIENK--DIYLAKIDK 121
DG L + G +EQ +Q + S + P + ++ED + EN +Y A++D
Sbjct: 84 DGGPLTIYGPAGIEQFVQTSLKVSRTRVSYP--IKYVVLKEDGLIFENNLFAVYTARLDH 141
Query: 122 RIQDYQIDILNEPRPGKKLL 141
R+ + ++ +PRPG+ L+
Sbjct: 142 RVPSFGFRVVEKPRPGELLM 161
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 137 GKKLLVLDIDYTLFDHRS-----------------AAEQGYELMRPYLHEFLTSAYKNYD 179
G K LVLD+D TL H S Q Y + RP++ +FL + + ++
Sbjct: 135 GLKTLVLDLDETLV-HSSFKPVHNPDFIVPVEIEGTIHQVYVVKRPFVDDFLRAIAEKFE 193
Query: 180 IAIWSATGMKWIEEKMKLL 198
I +++A+ K+ + + L
Sbjct: 194 IVVFTASLAKYADPVLDFL 212
>sp|Q8R1B4|EIF3C_MOUSE Eukaryotic translation initiation factor 3 subunit C OS=Mus
musculus GN=Eif3c PE=1 SV=1
Length = 911
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 285 LKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERGGEEEGEEEED 344
++R+ RYL+E T E++ + R + LH +K +A +R + E + E ++ E+
Sbjct: 481 IERVQRYLEEKGTTEEICQIYLR---RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN 537
Query: 345 EGEGSEI 351
EGE S +
Sbjct: 538 EGEDSAV 544
>sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus
GN=USP14 PE=1 SV=3
Length = 493
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 6 NLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ +KW +++ L+ + K ++ TGV P RQ++ + G + DD +
Sbjct: 5 SVTVKWGKEKFGGVELNTDEPPMVFKAQLFALTGVQPARQRV--MVKGGTLKDDD--WGN 60
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVA 108
+G +++MGS + +E S K + + D+ E+Q+A
Sbjct: 61 IKIKNGMTILMMGSADALPEEPSAKTVFVE------DMTEEQLA 98
>sp|Q74JN5|RNZ_LACJO Ribonuclease Z OS=Lactobacillus johnsonii (strain CNCM I-12250 /
La1 / NCC 533) GN=rnz PE=3 SV=1
Length = 309
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 69 DGFKLMVMG--SLEQSIQEA---STKPLDIPEIVDDFDIEEDQVAIENK--DIYLAKIDK 121
DG L + G +EQ +Q + S + P + ++ED + EN +Y A++D
Sbjct: 84 DGGPLTIYGPAGIEQFVQTSLRVSKTRVSYP--IKYVVLKEDGLIFENDIFAVYTARLDH 141
Query: 122 RIQDYQIDILNEPRPGKKLL 141
R+ + ++ +PRPG+ L+
Sbjct: 142 RVPSFGFRVVEKPRPGELLM 161
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 20 LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79
L SNT+LE K ++ + + KL+ ++GK+ D +++ DG +++ M S
Sbjct: 18 LEPSNTILETKTKLAQSISCEESQIKLI---YSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74
Query: 80 EQSIQEASTKPLDIPE 95
++S + T+P PE
Sbjct: 75 KKSTKTKVTEPPIAPE 90
>sp|Q3SYW6|EIF3C_BOVIN Eukaryotic translation initiation factor 3 subunit C OS=Bos taurus
GN=EIF3C PE=2 SV=1
Length = 912
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 285 LKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERGGEEEGEEEED 344
++R+ RYL+E T E++ + R + LH +K +A +R + E + E ++ E+
Sbjct: 482 IERVQRYLEEKGTTEEVCRIYLR---RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN 538
Query: 345 EGEGSEI 351
EGE S +
Sbjct: 539 EGEDSAV 545
>sp|A4IH17|BAG6_XENTR Large proline-rich protein bag6 OS=Xenopus tropicalis GN=Bag6
PE=2 SV=1
Length = 1129
Score = 32.3 bits (72), Expect = 5.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 25 TVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
TV E K I G++PE+Q+L+ + G++ +D KL + N DG
Sbjct: 22 TVKEFKTHISSDVGISPEKQRLI---YQGRVLQEDKKLKEYN-VDG 63
>sp|Q2RL30|CLPX_MOOTA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpX PE=3 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 21/135 (15%)
Query: 89 KPLDIPEIVDDFDIEEDQ------VAIENK----DIYLAKIDKRIQDYQIDILNEPRPGK 138
KP +I EI+D + I +DQ VA+ N ++ + D +Q I +L GK
Sbjct: 63 KPKEIREILDQYVISQDQAKKALAVAVYNHYKRINLGMKMDDVELQKSNIIMLGPTGSGK 122
Query: 139 KLL------VLDIDYTLFDHRSAAEQGY--ELMRPYLHEFLTSAYKNYDIAIWSATGMKW 190
LL +L++ + + D S E GY E + L + + +A +YD+ + G+ +
Sbjct: 123 TLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA--DYDVE-KAEKGIVY 179
Query: 191 IEEKMKLLGVTVNPN 205
I+E K+ + NP+
Sbjct: 180 IDEIDKIARKSENPS 194
>sp|B8CY75|TIG_HALOH Trigger factor OS=Halothermothrix orenii (strain H 168 / OCM 544 /
DSM 9562) GN=tig PE=3 SV=1
Length = 429
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 69 DGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVA 108
D F ++V + ++++Q A +P+D PEI DF IEE++ A
Sbjct: 66 DAFDILVPPAYQEAVQAAEIEPIDRPEIT-DFYIEENKPA 104
>sp|Q1IG17|LPTD_PSEE4 LPS-assembly protein LptD OS=Pseudomonas entomophila (strain L48)
GN=lptD PE=3 SV=1
Length = 944
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
NL +++ Y ++K ++E + L ++ LN + SDD KL
Sbjct: 340 FNLAPNYDATLYPRYMAKRGMLMEGEFRYLTKSSEGQFGGAYLNDE------SDDRKLQT 393
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDF---DIEEDQVAIENKDI------- 114
+ + MV + + E +D +I D F D+E DQ+ +E +D
Sbjct: 394 DYKKE--RWMVNWQHKGGLDERLMTEVDYTDISDPFYFQDLETDQIGVEKRDFVNQQGAL 451
Query: 115 ------YLAKIDKRIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYE 161
Y A+++ + Y++ +++ P KL + + TL H S + GYE
Sbjct: 452 NYRGDNYTARLN--VHAYEMATISQITPYDKLPQVTFNGTLPFHPSGLDFGYE 502
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 45/201 (22%)
Query: 138 KKLLVLDIDYTLFDH------RSAAEQGYEL----------------MRPYLHEFLTSAY 175
KK LV+D+D TL S + QG+ + RPY FLT
Sbjct: 251 KKKLVIDLDETLIHSASRSTTHSNSSQGHLVEVKFGLSGIRTLYFIHKRPYCDLFLTKVS 310
Query: 176 KNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGV 235
K YD+ I++A+ ++ + + L + ++ +Y + + GV +K L +
Sbjct: 311 KWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVL------RDGVGYIKDLSI 364
Query: 236 I-------WGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRL 288
+ G SL + I+ D+ ++ MN N +++ E ++ +D +L L
Sbjct: 365 VKDSEENGKGSSSSL---DDVIIIDNSPVSYAMNVDNAIQV----EGWISDPTDTDLLNL 417
Query: 289 GRYLDEI---ATVEDLTALNH 306
+L+ + V ++ AL H
Sbjct: 418 LPFLEAMRYSTDVRNILALKH 438
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 49/192 (25%)
Query: 132 NEPRPGKKLLVLDIDYTLFDH-----RSA-----------AEQGYELMRPYLHEFLTSAY 175
+E GKK L+LD+D TL RSA Y + RP + EFL
Sbjct: 251 DESTKGKKCLILDLDETLVHSSFKYLRSADFVLSVEIDDQVHNVYVIKRPGVEEFLERVG 310
Query: 176 KNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKI---AFYVDYSAMISVHLPKYGVVEVKP 232
K +++ +++A+ ++ + + +L ++++ A Y +Y +L + G +P
Sbjct: 311 KLFEVVVFTASVSRYGDPLLDILDTDKVIHHRLFREACY-NYEGNYIKNLSQIG----RP 365
Query: 233 LGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRP-FREAHLNRGSDRELKRLGRY 291
L I I+ D+ +++ +P++ + I F + H D EL
Sbjct: 366 LSDI-------------IILDNSPASYIFHPQHAIPISSWFSDTH-----DNEL------ 401
Query: 292 LDEIATVEDLTA 303
LD I +EDL+
Sbjct: 402 LDIIPLLEDLSV 413
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,620,998
Number of Sequences: 539616
Number of extensions: 6344590
Number of successful extensions: 34131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 33869
Number of HSP's gapped (non-prelim): 270
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)