Query psy11202
Match_columns 360
No_of_seqs 337 out of 2180
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:45:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02245 HAD_IIID1 HAD-superf 100.0 6E-53 1.3E-57 380.3 17.4 195 118-312 1-195 (195)
2 KOG1605|consensus 100.0 2.1E-34 4.5E-39 269.1 8.1 163 130-310 81-261 (262)
3 TIGR02251 HIF-SF_euk Dullard-l 100.0 1E-31 2.2E-36 236.9 15.3 145 138-300 1-162 (162)
4 PF03031 NIF: NLI interacting 100.0 1.6E-31 3.5E-36 233.8 11.5 147 139-302 1-159 (159)
5 KOG2832|consensus 99.9 3.3E-27 7.2E-32 225.0 15.3 181 127-328 177-361 (393)
6 KOG1872|consensus 99.9 5.1E-28 1.1E-32 237.0 -0.1 266 4-319 3-275 (473)
7 TIGR02250 FCP1_euk FCP1-like p 99.9 4E-24 8.7E-29 187.3 11.7 124 135-274 3-155 (156)
8 smart00577 CPDc catalytic doma 99.9 4.4E-21 9.6E-26 166.4 13.3 125 137-275 1-144 (148)
9 cd01813 UBP_N UBP ubiquitin pr 99.9 2.3E-21 4.9E-26 149.0 8.4 74 5-78 1-74 (74)
10 COG5190 FCP1 TFIIF-interacting 99.8 4.7E-19 1E-23 173.6 7.5 153 134-305 208-378 (390)
11 cd01812 BAG1_N Ubiquitin-like 99.6 4.2E-16 9E-21 118.2 8.0 70 5-77 1-70 (71)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 3.3E-14 7.1E-19 108.9 7.9 70 4-76 1-71 (73)
13 cd01807 GDX_N ubiquitin-like d 99.5 7.4E-14 1.6E-18 107.1 7.0 72 5-79 1-73 (74)
14 cd01804 midnolin_N Ubiquitin-l 99.5 1.7E-13 3.7E-18 106.3 8.0 73 5-81 2-75 (78)
15 cd01805 RAD23_N Ubiquitin-like 99.5 1.6E-13 3.4E-18 105.8 7.1 71 6-79 2-75 (77)
16 cd01792 ISG15_repeat1 ISG15 ub 99.4 2.7E-13 5.9E-18 105.6 7.9 72 5-79 3-77 (80)
17 cd01809 Scythe_N Ubiquitin-lik 99.4 3.6E-13 7.8E-18 102.1 7.1 69 5-76 1-70 (72)
18 PF00240 ubiquitin: Ubiquitin 99.4 6.2E-13 1.3E-17 100.2 6.8 65 12-79 4-68 (69)
19 cd01793 Fubi Fubi ubiquitin-li 99.4 6E-13 1.3E-17 102.1 6.7 69 6-78 2-70 (74)
20 cd01794 DC_UbP_C dendritic cel 99.4 5.2E-13 1.1E-17 101.5 6.3 66 8-76 2-68 (70)
21 cd01800 SF3a120_C Ubiquitin-li 99.4 6.1E-13 1.3E-17 102.6 6.3 67 10-79 4-70 (76)
22 cd01797 NIRF_N amino-terminal 99.4 1.2E-12 2.6E-17 101.6 6.8 72 6-80 2-76 (78)
23 cd01810 ISG15_repeat2 ISG15 ub 99.4 1.1E-12 2.4E-17 100.6 6.2 68 7-77 1-69 (74)
24 cd01798 parkin_N amino-termina 99.4 1.6E-12 3.5E-17 98.5 6.4 67 8-77 2-69 (70)
25 cd01806 Nedd8 Nebb8-like ubiq 99.3 4E-12 8.6E-17 97.4 7.3 71 5-78 1-72 (76)
26 cd01808 hPLIC_N Ubiquitin-like 99.3 2.9E-12 6.2E-17 97.4 6.4 69 5-76 1-69 (71)
27 cd01802 AN1_N ubiquitin-like d 99.3 4.1E-12 8.9E-17 103.7 7.5 71 4-77 27-98 (103)
28 cd01796 DDI1_N DNA damage indu 99.3 3.3E-12 7.2E-17 97.2 6.2 61 12-75 8-69 (71)
29 cd01803 Ubiquitin Ubiquitin. U 99.3 4.7E-12 1E-16 97.0 6.9 71 5-78 1-72 (76)
30 KOG0323|consensus 99.3 6.1E-12 1.3E-16 130.1 9.5 121 139-275 147-299 (635)
31 PTZ00044 ubiquitin; Provisiona 99.3 5.6E-12 1.2E-16 96.9 7.1 69 6-77 2-71 (76)
32 cd01790 Herp_N Homocysteine-re 99.3 5.4E-12 1.2E-16 97.7 6.6 70 5-77 2-78 (79)
33 smart00213 UBQ Ubiquitin homol 99.3 6.6E-12 1.4E-16 92.5 6.1 64 5-71 1-64 (64)
34 cd01769 UBL Ubiquitin-like dom 99.2 7.9E-11 1.7E-15 87.9 7.2 66 9-77 2-68 (69)
35 TIGR00601 rad23 UV excision re 99.1 6.2E-11 1.3E-15 117.3 7.1 74 5-81 1-78 (378)
36 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 2.8E-10 6E-15 87.1 5.1 54 21-77 18-74 (75)
37 KOG0010|consensus 99.0 5.8E-10 1.3E-14 111.2 6.4 74 4-80 15-88 (493)
38 KOG0011|consensus 99.0 9.5E-10 2.1E-14 104.6 6.2 74 5-81 1-77 (340)
39 KOG0005|consensus 98.9 1.1E-09 2.4E-14 78.6 4.6 68 6-76 2-70 (70)
40 cd01799 Hoil1_N Ubiquitin-like 98.9 2.1E-09 4.5E-14 82.8 6.3 60 12-75 11-72 (75)
41 cd01789 Alp11_N Ubiquitin-like 98.9 1.1E-08 2.4E-13 80.4 9.1 71 5-77 2-80 (84)
42 TIGR01685 MDP-1 magnesium-depe 98.9 6.2E-09 1.4E-13 92.8 7.7 126 138-274 2-158 (174)
43 cd01795 USP48_C USP ubiquitin- 98.8 5.7E-09 1.2E-13 83.0 6.0 60 15-77 16-76 (107)
44 cd01763 Sumo Small ubiquitin-r 98.8 2E-08 4.4E-13 79.4 8.2 71 4-77 11-82 (87)
45 PF14560 Ubiquitin_2: Ubiquiti 98.8 2E-08 4.3E-13 79.4 7.1 74 4-77 1-82 (87)
46 TIGR01681 HAD-SF-IIIC HAD-supe 98.6 4.5E-08 9.7E-13 82.8 4.3 61 139-199 1-68 (128)
47 KOG0003|consensus 98.6 1.9E-08 4.2E-13 80.7 1.9 69 6-77 3-71 (128)
48 PF11976 Rad60-SLD: Ubiquitin- 98.5 2.8E-07 6.1E-12 69.8 6.6 69 5-76 1-71 (72)
49 cd01801 Tsc13_N Ubiquitin-like 98.5 2.7E-07 5.8E-12 71.3 6.3 69 6-75 2-74 (77)
50 cd01814 NTGP5 Ubiquitin-like N 98.5 1.2E-07 2.7E-12 77.5 3.8 73 4-79 4-91 (113)
51 PLN03243 haloacid dehalogenase 98.4 3.5E-07 7.6E-12 86.7 6.3 99 161-274 108-210 (260)
52 PF11543 UN_NPL4: Nuclear pore 98.4 7.2E-07 1.6E-11 69.5 6.9 75 1-75 1-77 (80)
53 KOG0004|consensus 98.4 2.2E-07 4.9E-12 79.7 3.5 67 7-76 3-70 (156)
54 TIGR01662 HAD-SF-IIIA HAD-supe 98.4 9.3E-07 2E-11 74.5 7.0 112 139-269 1-127 (132)
55 PRK14988 GMP/IMP nucleotidase; 98.3 1.1E-06 2.3E-11 81.4 7.1 92 162-268 93-188 (224)
56 PRK13288 pyrophosphatase PpaX; 98.3 6.2E-07 1.4E-11 81.7 5.5 95 161-271 81-180 (214)
57 PLN02575 haloacid dehalogenase 98.3 6.9E-07 1.5E-11 88.8 6.1 97 162-273 216-316 (381)
58 PLN02560 enoyl-CoA reductase 98.3 1.7E-06 3.7E-11 83.9 7.4 70 6-75 2-80 (308)
59 TIGR01656 Histidinol-ppas hist 98.3 2.2E-06 4.7E-11 74.0 7.4 119 139-269 1-141 (147)
60 TIGR01684 viral_ppase viral ph 98.3 1.8E-06 3.9E-11 82.5 7.4 64 136-204 124-189 (301)
61 TIGR02253 CTE7 HAD superfamily 98.3 1.1E-06 2.5E-11 80.0 5.8 96 162-272 94-194 (221)
62 PRK11587 putative phosphatase; 98.3 1.6E-06 3.4E-11 79.5 6.3 97 161-273 82-182 (218)
63 PLN02770 haloacid dehalogenase 98.3 1E-06 2.2E-11 82.6 5.1 98 161-273 107-208 (248)
64 PRK13226 phosphoglycolate phos 98.2 1.3E-06 2.9E-11 80.8 5.5 97 161-272 94-194 (229)
65 cd01788 ElonginB Ubiquitin-lik 98.2 5.6E-06 1.2E-10 67.7 8.3 61 5-68 3-63 (119)
66 TIGR01449 PGP_bact 2-phosphogl 98.2 1.2E-06 2.6E-11 79.4 5.0 97 161-273 84-185 (213)
67 PF12689 Acid_PPase: Acid Phos 98.2 1.5E-06 3.2E-11 77.2 5.1 64 138-201 3-86 (169)
68 COG4996 Predicted phosphatase 98.2 3E-06 6.5E-11 71.3 6.6 123 140-272 2-145 (164)
69 PRK10725 fructose-1-P/6-phosph 98.2 9.2E-07 2E-11 78.6 3.7 92 164-272 90-185 (188)
70 TIGR01993 Pyr-5-nucltdase pyri 98.2 1.8E-06 3.9E-11 76.8 5.5 92 163-269 85-181 (184)
71 TIGR01454 AHBA_synth_RP 3-amin 98.2 1.3E-06 2.9E-11 79.0 4.7 97 161-272 74-174 (205)
72 COG0637 Predicted phosphatase/ 98.2 1E-06 2.2E-11 81.5 3.9 100 160-274 84-187 (221)
73 cd01427 HAD_like Haloacid deha 98.2 2.8E-06 6.1E-11 69.8 5.4 64 140-203 1-66 (139)
74 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 2.4E-06 5.3E-11 75.1 5.2 92 161-268 84-179 (183)
75 TIGR01428 HAD_type_II 2-haloal 98.2 1.7E-06 3.7E-11 77.8 4.3 94 162-270 92-189 (198)
76 TIGR03351 PhnX-like phosphonat 98.2 2.4E-06 5.1E-11 78.1 5.0 93 162-269 87-186 (220)
77 PHA03398 viral phosphatase sup 98.2 4.9E-06 1.1E-10 79.6 7.3 63 136-203 126-190 (303)
78 TIGR02009 PGMB-YQAB-SF beta-ph 98.1 1.9E-06 4.2E-11 76.2 4.1 91 161-269 87-182 (185)
79 PF13419 HAD_2: Haloacid dehal 98.1 9.9E-07 2.1E-11 76.1 1.9 94 159-268 74-172 (176)
80 TIGR00213 GmhB_yaeD D,D-heptos 98.1 7.6E-06 1.6E-10 72.7 7.4 123 139-269 2-146 (176)
81 PRK09449 dUMP phosphatase; Pro 98.1 7.5E-06 1.6E-10 75.0 7.6 95 162-270 95-193 (224)
82 PRK13223 phosphoglycolate phos 98.1 5.2E-06 1.1E-10 79.1 6.1 92 162-269 101-197 (272)
83 PRK13225 phosphoglycolate phos 98.1 4.2E-06 9.1E-11 79.9 4.9 94 162-272 142-238 (273)
84 PRK10826 2-deoxyglucose-6-phos 98.1 5.2E-06 1.1E-10 76.1 5.2 98 162-274 92-193 (222)
85 TIGR02254 YjjG/YfnB HAD superf 98.0 6.6E-06 1.4E-10 74.9 5.7 97 161-272 96-197 (224)
86 PRK10563 6-phosphogluconate ph 98.0 4.5E-06 9.7E-11 76.4 4.3 95 161-272 87-185 (221)
87 PRK08942 D,D-heptose 1,7-bisph 98.0 2.4E-05 5.2E-10 69.7 8.5 121 138-270 3-144 (181)
88 KOG3109|consensus 98.0 2.3E-05 5E-10 71.5 8.2 122 161-291 99-223 (244)
89 TIGR00338 serB phosphoserine p 98.0 1.5E-05 3.2E-10 72.8 7.1 107 161-272 84-193 (219)
90 TIGR01664 DNA-3'-Pase DNA 3'-p 98.0 2.2E-05 4.8E-10 69.4 7.3 67 134-200 9-93 (166)
91 TIGR01422 phosphonatase phosph 98.0 9.2E-06 2E-10 76.1 5.2 97 162-273 99-201 (253)
92 PHA02597 30.2 hypothetical pro 98.0 4.3E-06 9.3E-11 75.2 2.8 101 161-274 73-175 (197)
93 PRK13222 phosphoglycolate phos 98.0 1.2E-05 2.6E-10 73.4 5.7 94 161-270 92-190 (226)
94 PLN02940 riboflavin kinase 98.0 7.4E-06 1.6E-10 81.9 4.6 96 162-272 93-193 (382)
95 TIGR01686 FkbH FkbH-like domai 97.9 1.4E-05 3.1E-10 77.9 6.3 109 136-261 1-118 (320)
96 cd00196 UBQ Ubiquitin-like pro 97.9 2.9E-05 6.3E-10 54.5 6.3 63 12-77 6-68 (69)
97 TIGR01990 bPGM beta-phosphoglu 97.9 1.1E-05 2.5E-10 71.2 4.0 92 162-270 87-182 (185)
98 PLN02954 phosphoserine phospha 97.9 3.9E-05 8.5E-10 70.2 7.3 104 161-268 83-191 (224)
99 TIGR01261 hisB_Nterm histidino 97.9 3.4E-05 7.3E-10 68.0 6.5 124 139-274 2-148 (161)
100 PRK06698 bifunctional 5'-methy 97.8 1.6E-05 3.5E-10 81.2 4.9 96 162-272 330-426 (459)
101 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.8 2.6E-05 5.6E-10 69.8 5.2 104 161-269 79-186 (201)
102 PRK13478 phosphonoacetaldehyde 97.8 3.2E-05 6.9E-10 73.2 6.1 97 162-273 101-203 (267)
103 TIGR01489 DKMTPPase-SF 2,3-dik 97.8 4E-05 8.6E-10 67.7 6.3 101 161-266 71-182 (188)
104 TIGR02247 HAD-1A3-hyp Epoxide 97.8 2.9E-05 6.2E-10 70.5 4.9 98 161-273 93-196 (211)
105 KOG0001|consensus 97.8 0.00011 2.5E-09 54.1 7.3 67 11-80 7-73 (75)
106 KOG4248|consensus 97.8 2.9E-05 6.4E-10 83.6 5.3 70 4-77 2-72 (1143)
107 COG1011 Predicted hydrolase (H 97.8 5.7E-05 1.2E-09 68.9 6.6 93 161-268 98-194 (229)
108 PRK09456 ?-D-glucose-1-phospha 97.7 3E-05 6.6E-10 70.0 4.2 97 162-273 84-185 (199)
109 PRK06769 hypothetical protein; 97.7 4.6E-05 9.9E-10 67.7 5.2 123 137-273 3-137 (173)
110 PRK09552 mtnX 2-hydroxy-3-keto 97.7 0.00012 2.6E-09 67.2 7.9 100 160-267 72-181 (219)
111 PHA02530 pseT polynucleotide k 97.7 6.8E-05 1.5E-09 71.9 6.2 147 117-272 134-295 (300)
112 TIGR02252 DREG-2 REG-2-like, H 97.6 0.00013 2.9E-09 65.6 7.2 89 163-268 106-200 (203)
113 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 0.0001 2.2E-09 63.3 5.8 80 162-260 64-148 (154)
114 PF13881 Rad60-SLD_2: Ubiquiti 97.6 0.00023 5.1E-09 58.8 7.1 66 4-72 2-76 (111)
115 TIGR01548 HAD-SF-IA-hyp1 haloa 97.6 0.00028 6E-09 63.5 8.4 78 166-260 110-192 (197)
116 PLN02919 haloacid dehalogenase 97.5 0.00022 4.7E-09 80.0 7.7 96 163-273 162-262 (1057)
117 PRK13582 thrH phosphoserine ph 97.5 0.00016 3.4E-09 65.2 5.3 98 162-269 68-167 (205)
118 TIGR01663 PNK-3'Pase polynucle 97.4 0.00033 7.1E-09 72.7 7.3 107 133-256 163-294 (526)
119 PF05152 DUF705: Protein of un 97.4 0.00048 1E-08 65.4 7.4 63 137-203 121-184 (297)
120 TIGR01672 AphA HAD superfamily 97.4 0.0004 8.7E-09 65.0 6.6 114 140-272 65-210 (237)
121 COG0546 Gph Predicted phosphat 97.3 0.0003 6.6E-09 64.7 5.5 93 162-270 89-186 (220)
122 TIGR01668 YqeG_hyp_ppase HAD s 97.3 0.00037 7.9E-09 61.7 5.5 107 136-272 23-135 (170)
123 PRK11133 serB phosphoserine ph 97.3 0.00023 5E-09 69.6 4.3 135 131-270 103-288 (322)
124 PF08817 YukD: WXG100 protein 97.3 0.00049 1.1E-08 53.2 5.1 72 4-75 2-78 (79)
125 PRK05446 imidazole glycerol-ph 97.2 0.0011 2.3E-08 65.7 8.1 123 137-271 1-146 (354)
126 PRK10748 flavin mononucleotide 97.2 0.00031 6.7E-09 65.4 3.9 86 165-270 116-205 (238)
127 TIGR01493 HAD-SF-IA-v2 Haloaci 97.2 0.00012 2.6E-09 64.3 0.5 77 163-260 91-170 (175)
128 PTZ00445 p36-lilke protein; Pr 97.1 0.00078 1.7E-08 61.6 4.9 130 137-274 42-206 (219)
129 COG0560 SerB Phosphoserine pho 97.0 0.00091 2E-08 61.6 4.8 99 161-266 76-180 (212)
130 PRK08238 hypothetical protein; 96.9 0.002 4.4E-08 66.3 6.7 64 137-200 9-111 (479)
131 TIGR02137 HSK-PSP phosphoserin 96.9 0.0012 2.6E-08 60.3 4.5 41 161-201 67-107 (203)
132 TIGR01670 YrbI-phosphatas 3-de 96.9 0.0024 5.2E-08 55.6 6.1 108 139-269 2-115 (154)
133 TIGR01488 HAD-SF-IB Haloacid D 96.8 0.0023 5.1E-08 55.9 5.7 41 161-201 72-113 (177)
134 KOG4495|consensus 96.8 0.0022 4.9E-08 50.9 4.7 63 5-68 3-65 (110)
135 KOG3493|consensus 96.7 0.0011 2.3E-08 48.8 2.2 67 6-75 3-70 (73)
136 cd01811 OASL_repeat1 2'-5' oli 96.7 0.0083 1.8E-07 45.6 6.8 71 5-79 1-77 (80)
137 KOG0006|consensus 96.6 0.0022 4.8E-08 61.3 4.3 59 15-76 15-75 (446)
138 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.0043 9.3E-08 59.1 6.1 67 135-201 72-161 (266)
139 TIGR01689 EcbF-BcbF capsule bi 96.5 0.0063 1.4E-07 51.5 5.8 52 139-192 2-55 (126)
140 COG0561 Cof Predicted hydrolas 96.5 0.0079 1.7E-07 56.5 7.1 59 137-202 2-61 (264)
141 PRK11590 hypothetical protein; 96.4 0.0053 1.1E-07 56.1 5.2 39 162-200 95-135 (211)
142 PRK00192 mannosyl-3-phosphogly 96.4 0.0082 1.8E-07 56.9 6.6 57 138-201 4-61 (273)
143 PRK10513 sugar phosphate phosp 96.2 0.014 3E-07 54.9 7.4 58 138-202 3-61 (270)
144 PF11470 TUG-UBL1: GLUT4 regul 96.2 0.0087 1.9E-07 44.7 4.7 65 8-75 1-65 (65)
145 PF08645 PNK3P: Polynucleotide 96.2 0.0073 1.6E-07 53.0 4.9 103 139-257 1-129 (159)
146 COG5417 Uncharacterized small 96.2 0.029 6.3E-07 42.6 7.1 72 1-75 1-80 (81)
147 KOG3206|consensus 96.1 0.017 3.6E-07 52.4 6.6 77 5-83 2-86 (234)
148 TIGR01490 HAD-SF-IB-hyp1 HAD-s 96.0 0.0088 1.9E-07 53.6 4.4 40 162-201 87-127 (202)
149 PF13344 Hydrolase_6: Haloacid 96.0 0.013 2.7E-07 47.5 4.9 54 141-202 1-58 (101)
150 KOG2914|consensus 95.9 0.011 2.3E-07 54.9 4.6 102 159-273 89-196 (222)
151 TIGR02463 MPGP_rel mannosyl-3- 95.9 0.027 5.8E-07 51.4 7.2 55 140-201 1-56 (221)
152 smart00775 LNS2 LNS2 domain. T 95.8 0.021 4.5E-07 50.0 6.0 58 140-197 1-66 (157)
153 PRK11009 aphA acid phosphatase 95.8 0.036 7.9E-07 51.9 7.9 113 138-269 63-207 (237)
154 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.7 0.024 5.3E-07 52.8 6.5 58 137-202 7-67 (242)
155 TIGR01487 SPP-like sucrose-pho 95.7 0.026 5.7E-07 51.3 6.4 56 139-201 2-58 (215)
156 TIGR03333 salvage_mtnX 2-hydro 95.7 0.018 3.9E-07 52.6 5.2 41 160-200 68-109 (214)
157 PRK01158 phosphoglycolate phos 95.6 0.031 6.6E-07 51.1 6.5 57 138-201 3-60 (230)
158 TIGR01544 HAD-SF-IE haloacid d 95.6 0.061 1.3E-06 51.5 8.6 111 159-273 118-242 (277)
159 TIGR01545 YfhB_g-proteo haloac 95.5 0.023 4.9E-07 52.1 5.4 39 162-200 94-134 (210)
160 TIGR02461 osmo_MPG_phos mannos 95.5 0.029 6.3E-07 51.9 6.2 54 140-201 1-55 (225)
161 PRK09484 3-deoxy-D-manno-octul 95.5 0.018 3.9E-07 51.5 4.4 111 137-270 20-136 (183)
162 PF08282 Hydrolase_3: haloacid 95.5 0.031 6.8E-07 50.8 6.1 54 141-201 1-55 (254)
163 COG4502 5'(3')-deoxyribonucleo 95.4 0.032 7E-07 47.9 5.3 38 161-198 67-106 (180)
164 PRK03669 mannosyl-3-phosphogly 95.4 0.035 7.7E-07 52.5 6.4 58 137-201 6-64 (271)
165 PLN02779 haloacid dehalogenase 95.4 0.026 5.6E-07 54.2 5.4 99 162-273 144-246 (286)
166 PRK10530 pyridoxal phosphate ( 95.4 0.044 9.5E-07 51.4 6.8 57 138-201 3-60 (272)
167 TIGR00099 Cof-subfamily Cof su 95.2 0.041 8.9E-07 51.4 5.9 55 140-201 1-56 (256)
168 PRK15126 thiamin pyrimidine py 95.2 0.05 1.1E-06 51.4 6.5 57 138-201 2-59 (272)
169 COG3882 FkbH Predicted enzyme 95.1 0.081 1.8E-06 53.9 8.1 123 135-272 219-354 (574)
170 PRK10976 putative hydrolase; P 95.1 0.046 9.9E-07 51.3 6.2 57 138-201 2-59 (266)
171 PRK12702 mannosyl-3-phosphogly 95.1 0.053 1.2E-06 52.3 6.5 57 138-201 1-58 (302)
172 PF10302 DUF2407: DUF2407 ubiq 95.1 0.043 9.4E-07 44.3 5.0 47 16-65 14-64 (97)
173 TIGR01486 HAD-SF-IIB-MPGP mann 94.9 0.052 1.1E-06 50.8 5.9 55 140-201 1-56 (256)
174 PF06888 Put_Phosphatase: Puta 94.9 0.058 1.3E-06 50.4 6.0 43 160-202 69-114 (234)
175 PLN02645 phosphoglycolate phos 94.7 0.1 2.2E-06 50.7 7.4 57 138-202 28-88 (311)
176 COG5190 FCP1 TFIIF-interacting 94.6 0.035 7.6E-07 55.4 4.0 119 137-271 25-172 (390)
177 PF00789 UBX: UBX domain; Int 94.6 0.24 5.3E-06 38.0 8.0 71 4-75 6-80 (82)
178 KOG1639|consensus 94.6 0.066 1.4E-06 49.9 5.4 69 6-75 2-76 (297)
179 PRK10187 trehalose-6-phosphate 94.5 0.067 1.5E-06 50.8 5.5 60 137-198 13-74 (266)
180 smart00166 UBX Domain present 94.3 0.36 7.9E-06 37.1 8.4 71 4-75 4-78 (80)
181 PLN02811 hydrolase 94.3 0.057 1.2E-06 49.4 4.4 98 162-272 78-183 (220)
182 TIGR02726 phenyl_P_delta pheny 94.2 0.071 1.5E-06 47.3 4.7 114 137-272 6-124 (169)
183 TIGR01691 enolase-ppase 2,3-di 94.2 0.065 1.4E-06 49.6 4.6 95 161-272 94-195 (220)
184 PF06941 NT5C: 5' nucleotidase 94.2 0.034 7.4E-07 49.9 2.7 84 161-275 72-164 (191)
185 TIGR01484 HAD-SF-IIB HAD-super 94.1 0.1 2.2E-06 46.8 5.7 53 140-198 1-54 (204)
186 PRK10444 UMP phosphatase; Prov 94.0 0.098 2.1E-06 49.2 5.6 52 139-198 2-54 (248)
187 TIGR01482 SPP-subfamily Sucros 94.0 0.11 2.4E-06 47.1 5.8 53 141-200 1-54 (225)
188 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.0 0.17 3.6E-06 47.8 7.1 59 139-201 2-64 (257)
189 TIGR01485 SPP_plant-cyano sucr 93.9 0.11 2.5E-06 48.4 5.8 60 138-201 1-61 (249)
190 KOG1769|consensus 93.9 0.42 9.2E-06 38.5 8.0 73 4-79 20-93 (99)
191 COG2179 Predicted hydrolase of 93.9 0.17 3.7E-06 44.7 6.3 107 136-273 26-141 (175)
192 PF09419 PGP_phosphatase: Mito 93.8 0.15 3.2E-06 45.3 5.9 60 135-200 38-107 (168)
193 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.6 0.24 5.2E-06 46.4 7.4 56 139-202 2-61 (249)
194 PTZ00174 phosphomannomutase; P 93.6 0.15 3.3E-06 47.6 6.0 53 137-196 4-57 (247)
195 PLN02887 hydrolase family prot 93.5 0.16 3.5E-06 53.6 6.5 59 136-201 306-365 (580)
196 TIGR01675 plant-AP plant acid 93.3 0.19 4.1E-06 46.9 6.0 66 133-198 72-157 (229)
197 PRK06437 hypothetical protein; 93.3 0.35 7.6E-06 36.1 6.4 61 1-76 1-61 (67)
198 TIGR01452 PGP_euk phosphoglyco 93.2 0.31 6.8E-06 46.4 7.5 58 138-203 2-63 (279)
199 PRK14502 bifunctional mannosyl 93.0 0.22 4.8E-06 53.2 6.7 58 136-200 414-472 (694)
200 COG2503 Predicted secreted aci 92.8 0.13 2.8E-06 48.0 4.1 48 130-177 71-137 (274)
201 TIGR01456 CECR5 HAD-superfamil 92.8 0.23 5E-06 48.4 6.1 54 140-201 2-64 (321)
202 KOG0013|consensus 92.1 0.25 5.4E-06 45.0 4.9 63 12-77 155-217 (231)
203 PF11019 DUF2608: Protein of u 92.1 0.45 9.7E-06 45.0 6.9 62 137-198 19-118 (252)
204 cd01772 SAKS1_UBX SAKS1-like U 91.8 1.2 2.5E-05 34.3 7.8 70 4-75 4-77 (79)
205 cd06406 PB1_P67 A PB1 domain i 91.8 0.81 1.7E-05 35.6 6.7 42 5-47 3-44 (80)
206 cd01767 UBX UBX (ubiquitin reg 91.6 1.5 3.3E-05 33.3 8.2 68 4-73 2-73 (77)
207 COG0241 HisB Histidinol phosph 91.2 0.33 7.1E-06 43.6 4.7 119 138-267 5-143 (181)
208 PLN02423 phosphomannomutase 91.2 0.52 1.1E-05 44.2 6.3 48 137-191 6-53 (245)
209 COG1877 OtsB Trehalose-6-phosp 90.8 0.48 1E-05 45.2 5.7 64 131-196 11-76 (266)
210 KOG3120|consensus 90.6 0.56 1.2E-05 43.4 5.5 65 136-200 11-124 (256)
211 smart00666 PB1 PB1 domain. Pho 90.1 1.1 2.4E-05 34.1 6.3 43 5-47 2-44 (81)
212 PLN02151 trehalose-phosphatase 90.1 0.39 8.5E-06 47.6 4.5 61 134-196 94-154 (354)
213 cd01773 Faf1_like1_UBX Faf1 ik 90.0 2.6 5.6E-05 32.9 8.1 69 5-75 6-78 (82)
214 TIGR01460 HAD-SF-IIA Haloacid 89.4 0.55 1.2E-05 43.6 4.7 53 141-201 1-58 (236)
215 cd01770 p47_UBX p47-like ubiqu 89.2 3.2 6.9E-05 32.0 8.1 67 4-71 4-73 (79)
216 cd01774 Faf1_like2_UBX Faf1 ik 88.9 3.8 8.2E-05 32.1 8.4 71 3-75 3-82 (85)
217 COG0647 NagD Predicted sugar p 88.5 0.84 1.8E-05 43.6 5.4 54 137-198 7-61 (269)
218 PF05116 S6PP: Sucrose-6F-phos 88.4 0.43 9.4E-06 44.8 3.3 62 138-207 2-64 (247)
219 PLN03017 trehalose-phosphatase 88.1 0.68 1.5E-05 46.1 4.6 60 134-195 107-166 (366)
220 PF03767 Acid_phosphat_B: HAD 88.1 0.29 6.2E-06 45.6 1.9 65 136-200 70-157 (229)
221 PRK08364 sulfur carrier protei 87.9 2.5 5.3E-05 31.7 6.6 58 7-76 5-64 (70)
222 cd01771 Faf1_UBX Faf1 UBX doma 87.4 5.8 0.00013 30.7 8.6 70 4-75 4-77 (80)
223 PF00564 PB1: PB1 domain; Int 86.9 2.6 5.6E-05 32.2 6.4 44 4-47 1-45 (84)
224 TIGR02471 sucr_syn_bact_C sucr 86.8 0.77 1.7E-05 42.3 4.0 54 140-201 1-54 (236)
225 PF13019 Telomere_Sde2: Telome 86.7 2.6 5.7E-05 37.1 6.9 63 5-68 1-70 (162)
226 TIGR00685 T6PP trehalose-phosp 86.4 0.58 1.3E-05 43.6 2.9 49 137-187 2-52 (244)
227 PF12754 Blt1: Cell-cycle cont 86.2 0.22 4.8E-06 48.0 0.0 75 4-81 78-184 (309)
228 PRK14501 putative bifunctional 86.2 1 2.2E-05 49.0 5.0 60 136-197 490-551 (726)
229 PF08235 LNS2: LNS2 (Lipin/Ned 86.1 1.7 3.7E-05 38.1 5.5 59 140-198 1-64 (157)
230 TIGR01680 Veg_Stor_Prot vegeta 85.9 1.6 3.5E-05 41.7 5.6 63 136-198 99-182 (275)
231 cd06407 PB1_NLP A PB1 domain i 85.3 2.3 5.1E-05 33.1 5.4 36 5-40 1-36 (82)
232 PLN02580 trehalose-phosphatase 85.2 1.6 3.5E-05 43.8 5.5 61 134-196 115-175 (384)
233 KOG3085|consensus 84.8 1.4 3.1E-05 41.3 4.6 88 169-272 120-212 (237)
234 COG3769 Predicted hydrolase (H 84.8 3.4 7.4E-05 38.4 6.9 59 136-202 5-64 (274)
235 cd06396 PB1_NBR1 The PB1 domai 83.8 4.4 9.4E-05 31.6 6.2 41 5-45 1-43 (81)
236 cd06408 PB1_NoxR The PB1 domai 83.1 4.8 0.0001 31.7 6.3 36 5-40 3-38 (86)
237 COG4359 Uncharacterized conser 81.7 3.2 6.9E-05 37.5 5.3 40 160-199 71-111 (220)
238 PF15044 CLU_N: Mitochondrial 81.3 2.7 5.9E-05 32.2 4.2 54 20-76 1-56 (76)
239 PRK06488 sulfur carrier protei 80.9 5.4 0.00012 29.2 5.6 58 8-76 2-59 (65)
240 PF05822 UMPH-1: Pyrimidine 5' 80.8 9.1 0.0002 36.1 8.4 109 159-273 87-210 (246)
241 cd05992 PB1 The PB1 domain is 80.8 4.3 9.3E-05 30.7 5.3 37 5-41 1-38 (81)
242 TIGR01511 ATPase-IB1_Cu copper 79.5 3.7 8E-05 43.3 6.0 106 136-269 383-489 (562)
243 PLN02779 haloacid dehalogenase 78.4 1.1 2.4E-05 42.9 1.6 17 137-153 39-55 (286)
244 PLN02382 probable sucrose-phos 78.0 5 0.00011 40.7 6.2 58 137-201 8-69 (413)
245 KOG1615|consensus 77.6 5.2 0.00011 36.5 5.4 42 161-202 87-129 (227)
246 KOG4583|consensus 77.5 1.4 3E-05 43.0 1.8 60 3-65 8-72 (391)
247 cd00754 MoaD Ubiquitin domain 77.0 9 0.0002 28.8 6.0 55 14-76 16-74 (80)
248 KOG4250|consensus 76.7 20 0.00043 38.7 10.1 42 11-55 322-363 (732)
249 TIGR02958 sec_mycoba_snm4 secr 75.9 16 0.00035 37.5 9.2 72 5-77 3-79 (452)
250 PLN02205 alpha,alpha-trehalose 73.4 5.7 0.00012 44.1 5.5 55 137-195 595-651 (854)
251 KOG2982|consensus 72.8 5.6 0.00012 38.8 4.6 58 18-75 352-414 (418)
252 TIGR02244 HAD-IG-Ncltidse HAD 72.4 6.1 0.00013 39.1 4.9 40 159-198 181-221 (343)
253 cd06398 PB1_Joka2 The PB1 doma 71.7 15 0.00033 29.1 6.2 43 5-47 1-48 (91)
254 PF14836 Ubiquitin_3: Ubiquiti 71.7 15 0.00033 29.0 6.1 60 15-75 15-77 (88)
255 PRK05659 sulfur carrier protei 70.8 16 0.00036 26.5 5.9 59 8-76 2-60 (66)
256 PLN03063 alpha,alpha-trehalose 70.6 7.9 0.00017 42.7 5.8 60 137-196 506-568 (797)
257 TIGR01683 thiS thiamine biosyn 70.2 13 0.00028 27.1 5.2 56 11-76 3-58 (64)
258 cd00565 ThiS ThiaminS ubiquiti 69.6 12 0.00026 27.3 4.9 58 9-76 2-59 (65)
259 PF02358 Trehalose_PPase: Treh 69.5 5.6 0.00012 36.6 3.8 50 142-193 1-52 (235)
260 PF12710 HAD: haloacid dehalog 69.0 6.8 0.00015 34.1 4.1 38 165-202 92-130 (192)
261 KOG0012|consensus 68.6 10 0.00022 37.5 5.4 76 4-82 2-80 (380)
262 cd06397 PB1_UP1 Uncharacterize 67.5 14 0.00029 28.8 4.8 38 6-43 2-39 (82)
263 KOG2134|consensus 67.2 8.3 0.00018 38.6 4.6 58 130-187 67-130 (422)
264 PLN02177 glycerol-3-phosphate 66.1 8.1 0.00018 40.2 4.5 23 179-201 124-147 (497)
265 PRK05863 sulfur carrier protei 65.5 25 0.00054 25.8 5.9 58 8-76 2-59 (65)
266 PLN03064 alpha,alpha-trehalose 65.0 12 0.00027 41.8 5.9 62 137-198 590-660 (934)
267 PF00702 Hydrolase: haloacid d 64.4 9.6 0.00021 33.6 4.2 56 141-200 110-166 (215)
268 TIGR01525 ATPase-IB_hvy heavy 63.6 14 0.0003 38.9 5.8 107 136-269 362-470 (556)
269 PRK06083 sulfur carrier protei 63.2 29 0.00062 27.1 6.1 62 5-76 17-78 (84)
270 COG1778 Low specificity phosph 61.6 14 0.00031 32.5 4.5 63 137-201 7-75 (170)
271 PRK07440 hypothetical protein; 61.5 37 0.00081 25.4 6.3 64 1-76 1-64 (70)
272 PRK01777 hypothetical protein; 59.6 55 0.0012 26.2 7.3 66 1-78 1-76 (95)
273 PLN02799 Molybdopterin synthas 59.5 26 0.00056 26.7 5.3 64 5-76 2-76 (82)
274 cd01775 CYR1_RA Ubiquitin doma 58.9 21 0.00045 28.8 4.6 72 6-78 4-87 (97)
275 TIGR01687 moaD_arch MoaD famil 57.4 48 0.001 25.5 6.6 56 14-76 16-82 (88)
276 PRK07696 sulfur carrier protei 55.6 38 0.00083 25.0 5.4 59 8-76 2-61 (67)
277 COG2104 ThiS Sulfur transfer p 55.4 52 0.0011 24.6 6.1 60 7-76 3-62 (68)
278 cd06404 PB1_aPKC PB1 domain is 54.8 35 0.00076 26.7 5.2 37 5-41 1-37 (83)
279 PRK08053 sulfur carrier protei 54.5 50 0.0011 24.2 5.9 59 8-76 2-60 (66)
280 TIGR01682 moaD molybdopterin c 54.0 55 0.0012 24.7 6.3 53 16-76 18-74 (80)
281 PF14453 ThiS-like: ThiS-like 53.8 52 0.0011 23.9 5.6 53 8-76 2-54 (57)
282 KOG4549|consensus 53.7 60 0.0013 27.7 6.7 64 137-200 4-84 (144)
283 COG0089 RplW Ribosomal protein 53.2 29 0.00062 27.9 4.6 36 13-48 21-56 (94)
284 PRK06944 sulfur carrier protei 52.5 65 0.0014 23.1 6.2 58 8-76 2-59 (65)
285 cd06411 PB1_p51 The PB1 domain 49.8 40 0.00088 26.1 4.8 33 15-47 8-40 (78)
286 cd06409 PB1_MUG70 The MUG70 pr 49.6 32 0.0007 27.1 4.3 37 7-43 3-40 (86)
287 PF00276 Ribosomal_L23: Riboso 48.0 25 0.00054 27.8 3.5 39 14-54 21-59 (91)
288 TIGR01512 ATPase-IB2_Cd heavy 47.1 37 0.00081 35.5 5.7 88 160-270 360-449 (536)
289 KOG4842|consensus 44.8 6.3 0.00014 37.2 -0.4 67 5-76 4-70 (278)
290 PRK05738 rplW 50S ribosomal pr 44.7 34 0.00073 27.2 3.8 36 13-48 20-55 (92)
291 PF02017 CIDE-N: CIDE-N domain 44.6 1.2E+02 0.0027 23.4 6.7 62 12-79 12-73 (78)
292 COG4850 Uncharacterized conser 44.6 65 0.0014 31.8 6.4 132 137-275 160-316 (373)
293 PF02597 ThiS: ThiS family; I 44.5 41 0.00089 24.8 4.2 57 15-76 13-71 (77)
294 cd01615 CIDE_N CIDE_N domain, 44.1 1.3E+02 0.0028 23.3 6.8 63 12-80 12-74 (78)
295 PF08484 Methyltransf_14: C-me 43.7 1.4E+02 0.003 26.1 7.9 46 165-215 55-101 (160)
296 COG5227 SMT3 Ubiquitin-like pr 42.6 70 0.0015 25.5 5.1 66 5-73 25-91 (103)
297 PRK14548 50S ribosomal protein 42.1 40 0.00087 26.4 3.8 35 13-47 21-55 (84)
298 PF14533 USP7_C2: Ubiquitin-sp 40.9 23 0.00049 32.5 2.6 43 5-47 19-68 (213)
299 CHL00030 rpl23 ribosomal prote 40.9 60 0.0013 25.9 4.7 36 13-48 19-54 (93)
300 TIGR03636 L23_arch archaeal ri 40.5 58 0.0013 25.1 4.4 34 14-47 15-48 (77)
301 KOG2689|consensus 39.9 70 0.0015 30.6 5.7 70 5-75 211-284 (290)
302 PF12710 HAD: haloacid dehalog 39.1 14 0.00031 32.0 1.0 13 141-153 1-13 (192)
303 PF10790 DUF2604: Protein of U 38.9 99 0.0021 23.1 5.1 66 11-78 3-71 (76)
304 COG4555 NatA ABC-type Na+ tran 38.7 43 0.00092 31.1 3.9 40 159-198 164-203 (245)
305 PTZ00380 microtubule-associate 35.9 40 0.00087 28.3 3.1 44 19-65 46-89 (121)
306 PF00702 Hydrolase: haloacid d 34.8 20 0.00044 31.5 1.3 15 139-153 2-16 (215)
307 cd06410 PB1_UP2 Uncharacterize 34.6 91 0.002 25.0 4.9 34 9-42 17-51 (97)
308 KOG0007|consensus 34.6 17 0.00037 35.8 0.9 48 10-60 289-337 (341)
309 cd06536 CIDE_N_ICAD CIDE_N dom 34.5 1E+02 0.0023 23.9 5.0 55 119-188 23-77 (80)
310 COG3700 AphA Acid phosphatase 34.0 35 0.00076 30.8 2.6 72 139-216 64-141 (237)
311 KOG2561|consensus 33.9 13 0.00029 37.9 -0.1 69 5-76 38-109 (568)
312 PRK10671 copA copper exporting 33.7 85 0.0018 34.8 6.1 106 137-269 629-735 (834)
313 PRK11840 bifunctional sulfur c 33.5 98 0.0021 30.5 5.8 59 8-76 2-60 (326)
314 PRK08453 fliD flagellar cappin 33.2 62 0.0013 35.0 4.7 33 5-37 129-161 (673)
315 KOG2961|consensus 33.0 60 0.0013 28.6 3.8 47 137-186 42-88 (190)
316 cd06539 CIDE_N_A CIDE_N domain 32.8 71 0.0015 24.7 3.7 34 138-186 40-73 (78)
317 PF04126 Cyclophil_like: Cyclo 32.7 47 0.001 27.6 3.1 29 5-33 1-29 (120)
318 PF09379 FERM_N: FERM N-termin 32.3 71 0.0015 23.8 3.8 38 12-51 5-42 (80)
319 PF14533 USP7_C2: Ubiquitin-sp 32.0 46 0.001 30.5 3.2 30 13-42 132-161 (213)
320 PF02192 PI3K_p85B: PI3-kinase 31.7 57 0.0012 25.2 3.1 22 16-37 2-23 (78)
321 cd06539 CIDE_N_A CIDE_N domain 31.7 2.5E+02 0.0053 21.8 6.8 61 12-78 12-72 (78)
322 KOG2086|consensus 31.5 1.1E+02 0.0024 30.6 5.9 65 5-70 306-373 (380)
323 PF10209 DUF2340: Uncharacteri 30.4 1.4E+02 0.0031 25.1 5.5 37 11-47 11-60 (122)
324 PRK13552 frdB fumarate reducta 28.6 1.2E+02 0.0026 28.4 5.4 37 1-37 1-47 (239)
325 PLN02499 glycerol-3-phosphate 28.5 41 0.00089 35.0 2.4 22 179-200 110-132 (498)
326 PF14451 Ub-Mut7C: Mut7-C ubiq 28.4 1E+02 0.0023 23.8 4.1 55 11-76 20-74 (81)
327 smart00144 PI3K_rbd PI3-kinase 27.5 1.7E+02 0.0038 23.7 5.5 33 4-36 17-51 (108)
328 smart00266 CAD Domains present 27.5 2.8E+02 0.0062 21.2 6.7 61 11-77 9-69 (74)
329 KOG4361|consensus 27.2 27 0.00058 34.6 0.7 74 4-80 61-140 (344)
330 COG5083 SMP2 Uncharacterized p 26.3 56 0.0012 33.5 2.8 57 135-191 372-433 (580)
331 PF00794 PI3K_rbd: PI3-kinase 26.3 2.2E+02 0.0047 22.7 5.9 33 4-36 16-50 (106)
332 smart00295 B41 Band 4.1 homolo 26.3 1.7E+02 0.0036 25.6 5.8 44 4-49 3-47 (207)
333 PRK12280 rplW 50S ribosomal pr 26.1 1.3E+02 0.0028 26.4 4.8 36 13-48 22-57 (158)
334 PF03633 Glyco_hydro_65C: Glyc 25.7 1.2E+02 0.0027 21.0 3.8 20 4-23 9-28 (54)
335 PRK09908 xanthine dehydrogenas 25.5 1.2E+02 0.0026 26.7 4.4 35 4-39 6-40 (159)
336 cd05484 retropepsin_like_LTR_2 25.0 1.1E+02 0.0023 23.6 3.7 47 6-54 2-51 (91)
337 PRK11130 moaD molybdopterin sy 24.1 3.2E+02 0.0069 20.6 6.4 15 23-37 25-39 (81)
338 smart00143 PI3K_p85B PI3-kinas 24.0 90 0.0019 24.1 3.0 22 16-37 2-23 (78)
339 PF08783 DWNN: DWNN domain; I 24.0 96 0.0021 23.7 3.1 30 10-39 6-36 (74)
340 KOG4572|consensus 23.9 1.5E+02 0.0033 32.8 5.6 61 12-76 3-68 (1424)
341 PRK11033 zntA zinc/cadmium/mer 23.4 1.8E+02 0.0038 32.0 6.2 61 137-201 547-608 (741)
342 PF14732 UAE_UbL: Ubiquitin/SU 22.5 1.7E+02 0.0037 22.8 4.4 56 18-76 2-67 (87)
343 cd06538 CIDE_N_FSP27 CIDE_N do 22.0 3.8E+02 0.0083 20.8 6.4 63 12-81 12-74 (79)
344 KOG2044|consensus 21.0 2.2E+02 0.0048 31.4 6.1 91 265-356 56-165 (931)
345 TIGR01691 enolase-ppase 2,3-di 20.7 31 0.00068 31.8 -0.2 35 139-173 2-36 (220)
346 KOG3040|consensus 20.6 2.7E+02 0.0059 26.0 5.8 53 138-198 7-60 (262)
347 cd01764 Urm1 Urm1-like ubuitin 20.5 3.7E+02 0.0081 21.2 6.1 31 15-47 18-50 (94)
348 PF02991 Atg8: Autophagy prote 20.5 1.3E+02 0.0029 24.4 3.5 45 19-65 38-82 (104)
No 1
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=6e-53 Score=380.26 Aligned_cols=195 Identities=67% Similarity=1.172 Sum_probs=184.2
Q ss_pred HhhHHhhhhccccCCCCCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHH
Q psy11202 118 KIDKRIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKL 197 (360)
Q Consensus 118 kl~~ri~~y~i~i~~~~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~ 197 (360)
|+++++++|.+++++||+++||||||||||||+|+.+...++++.+||||++||++|+++|+|+||||+++.||+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~ 80 (195)
T TIGR02245 1 KLLRRIEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTE 80 (195)
T ss_pred ChhHHHHhcCccccCCCCCCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHH
Confidence 57899999999999999999999999999999998777778899999999999999999999999999999999999999
Q ss_pred hCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcC
Q psy11202 198 LGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHL 277 (360)
Q Consensus 198 L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~ 277 (360)
|++..++.+++.++||+.+|+++++...|..++|||+.+|+++++.|+++|||||||+|.+|.+||+|||+|+||.+++.
T Consensus 81 l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~ 160 (195)
T TIGR02245 81 LGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHA 160 (195)
T ss_pred hcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCC
Confidence 99988899999999999999988877778777999999999888767999999999999999999999999999998766
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCchhchhhhhhh
Q psy11202 278 NRGSDRELKRLGRYLDEIATVEDLTALNHRNWEKY 312 (360)
Q Consensus 278 ~~~~D~~L~~L~~~L~~la~~~DVr~~~~~~w~~~ 312 (360)
++.+|++|..|++||+.||.++|||+++|++|++|
T Consensus 161 ~~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~~~ 195 (195)
T TIGR02245 161 NRGTDQELLKLTQYLKTIAELEDFSSLDHKEWERY 195 (195)
T ss_pred CCcccHHHHHHHHHHHHHhcCcccchhhhcccccC
Confidence 77899999999999999999999999999999986
No 2
>KOG1605|consensus
Probab=100.00 E-value=2.1e-34 Score=269.13 Aligned_cols=163 Identities=25% Similarity=0.382 Sum_probs=139.8
Q ss_pred cCCCCCCCCceEEeecccceeecCC------C------------cccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHH
Q psy11202 130 ILNEPRPGKKLLVLDIDYTLFDHRS------A------------AEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWI 191 (360)
Q Consensus 130 i~~~~~~~kk~LVLDLD~TLv~~~~------~------------~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya 191 (360)
....+..+||+|||||||||+|+.. . ....++.+|||+++||..+.++|+++||||+...||
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYA 160 (262)
T ss_pred CcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3445577999999999999999983 1 123689999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecc
Q psy11202 192 EEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRP 271 (360)
Q Consensus 192 ~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~ 271 (360)
.++++.|+.. ...+...+.|++|... .+.|+|||+.+++++ +|||||||+|.+|.+||+|||+|++
T Consensus 161 ~~v~D~LD~~---~~i~~~RlyR~~C~~~-----~g~yvKdls~~~~dL------~~viIiDNsP~sy~~~p~NgIpI~s 226 (262)
T KOG1605|consen 161 DPLLDILDPD---RKIISHRLYRDSCTLK-----DGNYVKDLSVLGRDL------SKVIIVDNSPQSYRLQPENGIPIKS 226 (262)
T ss_pred HHHHHHccCC---CCeeeeeecccceEeE-----CCcEEEEcceeccCc------ccEEEEcCChHHhccCccCCCcccc
Confidence 9999999431 2345566678877642 346899999998765 8999999999999999999999999
Q ss_pred cccCcCCCCCchHHHHHHHHHHhccCCCCCchhchhhhh
Q psy11202 272 FREAHLNRGSDRELKRLGRYLDEIATVEDLTALNHRNWE 310 (360)
Q Consensus 272 f~~~~~~~~~D~~L~~L~~~L~~la~~~DVr~~~~~~w~ 310 (360)
|.. +..|+||++|++||++|+.++|||++.++.|.
T Consensus 227 w~~----d~~D~eLL~LlpfLe~L~~~~Dvr~~l~~~~~ 261 (262)
T KOG1605|consen 227 WFD----DPTDTELLKLLPFLEALAFVDDVRPILARRFG 261 (262)
T ss_pred ccc----CCChHHHHHHHHHHHHhcccccHHHHHHHhhc
Confidence 986 57799999999999999999999999998875
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.98 E-value=1e-31 Score=236.86 Aligned_cols=145 Identities=24% Similarity=0.337 Sum_probs=125.9
Q ss_pred CceEEeecccceeecCCCc-----------------ccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAA-----------------EQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~-----------------~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~ 200 (360)
|++||||||+||+|+.... ..+++++|||+.+||++|+++|+|+||||+++.||+++++.|++
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 6899999999999987532 13578999999999999999999999999999999999999965
Q ss_pred CCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcCCCC
Q psy11202 201 TVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRG 280 (360)
Q Consensus 201 ~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~ 280 (360)
.. ..+.+++.++.|... ++.++|+|+.+|++. ++||||||++..|..+|+|||+|.+|.| +.
T Consensus 81 ~~---~~f~~~l~r~~~~~~-----~~~~~K~L~~l~~~~------~~vIiVDD~~~~~~~~~~NgI~i~~f~~----~~ 142 (162)
T TIGR02251 81 GG---KVISRRLYRESCVFT-----NGKYVKDLSLVGKDL------SKVIIIDNSPYSYSLQPDNAIPIKSWFG----DP 142 (162)
T ss_pred CC---CEEeEEEEccccEEe-----CCCEEeEchhcCCCh------hhEEEEeCChhhhccCccCEeecCCCCC----CC
Confidence 42 246677888887642 223899999998654 8999999999999999999999999986 57
Q ss_pred CchHHHHHHHHHHhccCCCC
Q psy11202 281 SDRELKRLGRYLDEIATVED 300 (360)
Q Consensus 281 ~D~~L~~L~~~L~~la~~~D 300 (360)
+|++|..|++||+.|+.++|
T Consensus 143 ~D~~L~~l~~~L~~l~~~~~ 162 (162)
T TIGR02251 143 NDTELLNLIPFLEGLRFEDD 162 (162)
T ss_pred CHHHHHHHHHHHHHHhccCC
Confidence 89999999999999999876
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.97 E-value=1.6e-31 Score=233.83 Aligned_cols=147 Identities=30% Similarity=0.450 Sum_probs=111.6
Q ss_pred ceEEeecccceeecCCCc------------ccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCc
Q psy11202 139 KLLVLDIDYTLFDHRSAA------------EQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNY 206 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~------------~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~ 206 (360)
|+|||||||||+|+.... ..+++++|||+++||++|+++|+|+|||++++.||+.+++.|+.. ..
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~---~~ 77 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPN---GK 77 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTT---TS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhh---cc
Confidence 689999999999987642 246799999999999999999999999999999999999999643 22
Q ss_pred eEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcCCCCCchHHH
Q psy11202 207 KIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELK 286 (360)
Q Consensus 207 ~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~ 286 (360)
.+..+|.+++|... .| .++|||+.++++ +++||+|||++.+|..+|+|+|+|++|.+.. .+|++|.
T Consensus 78 ~~~~~~~r~~~~~~----~~-~~~KdL~~l~~~------~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~---~~D~~L~ 143 (159)
T PF03031_consen 78 LFSRRLYRDDCTFD----KG-SYIKDLSKLGRD------LDNVVIVDDSPRKWALQPDNGIPVPPFFGDT---PNDRELL 143 (159)
T ss_dssp SEEEEEEGGGSEEE----TT-EEE--GGGSSS-------GGGEEEEES-GGGGTTSGGGEEE----SSCH---TT--HHH
T ss_pred cccccccccccccc----cc-ccccchHHHhhc------cccEEEEeCCHHHeeccCCceEEeccccCCC---cchhHHH
Confidence 45677788877521 23 347999999654 4899999999999999999999999998631 6899999
Q ss_pred HHHHHHHhccCCCCCc
Q psy11202 287 RLGRYLDEIATVEDLT 302 (360)
Q Consensus 287 ~L~~~L~~la~~~DVr 302 (360)
.|++||+.|++++|||
T Consensus 144 ~l~~~L~~l~~~~Dvr 159 (159)
T PF03031_consen 144 RLLPFLEELAKEDDVR 159 (159)
T ss_dssp HHHHHHHHHHTHS-CH
T ss_pred HHHHHHHHhCcccCCC
Confidence 9999999999999997
No 5
>KOG2832|consensus
Probab=99.95 E-value=3.3e-27 Score=225.04 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=148.8
Q ss_pred cccc-CCCCCCCCceEEeecccceeecCCCccc-ceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCC
Q psy11202 127 QIDI-LNEPRPGKKLLVLDIDYTLFDHRSAAEQ-GYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNP 204 (360)
Q Consensus 127 ~i~i-~~~~~~~kk~LVLDLD~TLv~~~~~~~~-~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~ 204 (360)
.++. .||....+++|||+|.++|||..|+..+ +.+.+|||++.||..|+++|||||||+....|+.++++.| +|
T Consensus 177 LPdpl~pPy~Qp~yTLVleledvLVhpdws~~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d~l----DP 252 (393)
T KOG2832|consen 177 LPDPLPPPYEQPPYTLVLELEDVLVHPDWSYKTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLDAL----DP 252 (393)
T ss_pred CCCCCCCcccCCCceEEEEeeeeEeccchhhhcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhHhhc----CC
Confidence 3444 3344447899999999999999887544 5799999999999999999999999999999999999999 45
Q ss_pred CceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcCCCCCchH
Q psy11202 205 NYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRE 284 (360)
Q Consensus 205 ~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~ 284 (360)
...|.+.+.++++.+ .+++++|||+.|.|++ +++|+||-.+..+.+||+|.|.+.+|.| +.+|+.
T Consensus 253 ~g~IsYkLfr~~t~y-----~~G~HvKdls~LNRdl------~kVivVd~d~~~~~l~P~N~l~l~~W~G----n~dDt~ 317 (393)
T KOG2832|consen 253 KGYISYKLFRGATKY-----EEGHHVKDLSKLNRDL------QKVIVVDFDANSYKLQPENMLPLEPWSG----NDDDTS 317 (393)
T ss_pred cceEEEEEecCcccc-----cCccchhhhhhhcccc------ceeEEEEccccccccCcccccccCcCCC----Ccccch
Confidence 567888777777533 3457899999999887 8899999999999999999999999987 578999
Q ss_pred HHHHHHHHHhcc--CCCCCchhchhhhhhhhhhhHHHHHHHHHHHH
Q psy11202 285 LKRLGRYLDEIA--TVEDLTALNHRNWEKYLHAKHKERKRARRRAM 328 (360)
Q Consensus 285 L~~L~~~L~~la--~~~DVr~~~~~~w~~~~~~~~~~~~~~~~~~~ 328 (360)
|++|+.||+.|+ +++|||++.+. |+.+..... ++++.|++.+
T Consensus 318 L~dL~~FL~~ia~~~~eDvR~vL~~-y~~~~D~~~-~F~~rqk~l~ 361 (393)
T KOG2832|consen 318 LFDLLAFLEYIAQQQVEDVRPVLQS-YSQEKDPAK-EFRDRQKKLQ 361 (393)
T ss_pred hhhHHHHHHHHHHccHHHHHHHHHH-hccccCHHH-HHHHHHHHHH
Confidence 999999999999 78999999865 554444433 3444444444
No 6
>KOG1872|consensus
Probab=99.93 E-value=5.1e-28 Score=236.99 Aligned_cols=266 Identities=15% Similarity=0.012 Sum_probs=197.1
Q ss_pred eEEEEEEECCeEEEEE-eCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCcch
Q psy11202 4 SLNLIIKWNSKEYKTS-LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQS 82 (360)
Q Consensus 4 ~i~i~vk~~g~~~~i~-v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~~~ 82 (360)
+++|.|||+|+.|+++ +++++|+.+||++|+.+|||||+|||++ +||++++|+..+..++||||.++|||||+++.
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~---vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~ 79 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVM---VKGGLAKDDVDWGALQIKPNETLMMMGTAEAG 79 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEE---EecccccccccccccccCCCCEEEeecccccc
Confidence 6789999999999988 9999999999999999999999999999 99999999999999999999999999999984
Q ss_pred hhhccCCCCCccccccccchhhh------hhhhhhhhhhHHHhhHHhhhhccccCCCCCCCCceEEeecccceeecCCCc
Q psy11202 83 IQEASTKPLDIPEIVDDFDIEED------QVAIENKDIYLAKIDKRIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAA 156 (360)
Q Consensus 83 i~~~~~~~~~~~~~~~d~~~~~~------~~~l~n~~~~l~kl~~ri~~y~i~i~~~~~~~kk~LVLDLD~TLv~~~~~~ 156 (360)
+ .+|...+.|++|+.++++ ++++.|++ |.-.+++++.-|...+..|++..++.+++|-|+|+.++
T Consensus 80 ~----e~p~~~~~~~ed~~e~~~~~~~~lp~gl~nlg-NtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a---- 150 (473)
T KOG1872|consen 80 L----EPPSLPPTFIEDSAEQFASAALPLPVGLPNLG-NTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERR---- 150 (473)
T ss_pred c----cCcccCCcchhhhhHHHHHhhccCCccccchh-HHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhh----
Confidence 3 456666778888865433 36777777 45555667777888888888899999999999999984
Q ss_pred ccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhh
Q psy11202 157 EQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVI 236 (360)
Q Consensus 157 ~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l 236 (360)
.+..+.+||++++|++. .-|.++||+++..++....++.+ ......++..+-++...|..++....+.
T Consensus 151 ~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~-~~g~~~qqda~ec~~~~m~~l~~~~~~~--------- 218 (473)
T KOG1872|consen 151 RRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWV-EYGIYMQQDAAECWMEEPGMLTEALTVA--------- 218 (473)
T ss_pred hhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHh-hhhhHHHHHHhHhHHHhhhheecccccc---------
Confidence 45778899999999999 99999999999999999988876 4333344444433333333332211111
Q ss_pred cccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcCCCCCchHHHHHHHHHHhccCCCCCchhchhhhhhhhhhh
Q psy11202 237 WGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIATVEDLTALNHRNWEKYLHAK 316 (360)
Q Consensus 237 ~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~~~L~~la~~~DVr~~~~~~w~~~~~~~ 316 (360)
++..+..+++|....+.+++ +......+.....+..++|..+.|..|+.+...+
T Consensus 219 -------~~~~~~~~~~d~~f~~~~~~-------------------t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k 272 (473)
T KOG1872|consen 219 -------TEAPCLEAEAAAGFGAEFST-------------------TMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMR 272 (473)
T ss_pred -------ccccchhHHHHHhhcccccc-------------------ceeeccCcccccccccccccccceEEeeeechhh
Confidence 11112223333322222222 1111122233344558999999999999998877
Q ss_pred HHH
Q psy11202 317 HKE 319 (360)
Q Consensus 317 ~~~ 319 (360)
...
T Consensus 273 ~Gl 275 (473)
T KOG1872|consen 273 FGL 275 (473)
T ss_pred hhh
Confidence 654
No 7
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.91 E-value=4e-24 Score=187.28 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=100.3
Q ss_pred CCCCceEEeecccceeecCCCc----------------------------ccceeecCccHHHHHHHHhcCCeEEEEcCC
Q psy11202 135 RPGKKLLVLDIDYTLFDHRSAA----------------------------EQGYELMRPYLHEFLTSAYKNYDIAIWSAT 186 (360)
Q Consensus 135 ~~~kk~LVLDLD~TLv~~~~~~----------------------------~~~~~~~RP~l~eFL~~l~~~yeivIwTas 186 (360)
+.+|++||||||+||+|+.... ...++..|||+.+||+.+++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 3589999999999999986421 013577899999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCC-CCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCC
Q psy11202 187 GMKWIEEKMKLLGVTVN-PNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRN 265 (360)
Q Consensus 187 ~~~ya~~il~~L~~~~~-~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~N 265 (360)
+..||+.+++.|++... +. ..++.++.|. +.++|||+.++. .+.+++|||||++.+|..||+|
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~---~ri~~rd~~~--------~~~~KdL~~i~~-----~d~~~vvivDd~~~~~~~~~~N 146 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFG---DRIISRDESG--------SPHTKSLLRLFP-----ADESMVVIIDDREDVWPWHKRN 146 (156)
T ss_pred cHHHHHHHHHHhCcCCCeec---cEEEEeccCC--------CCccccHHHHcC-----CCcccEEEEeCCHHHhhcCccC
Confidence 99999999999976532 11 2334566553 357899977753 2448899999999999999999
Q ss_pred eeEeccccc
Q psy11202 266 GLRIRPFRE 274 (360)
Q Consensus 266 gi~I~~f~~ 274 (360)
+|+|.||.+
T Consensus 147 ~i~i~~~~~ 155 (156)
T TIGR02250 147 LIQIEPYNY 155 (156)
T ss_pred EEEeCCccc
Confidence 999999975
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.86 E-value=4.4e-21 Score=166.45 Aligned_cols=125 Identities=26% Similarity=0.308 Sum_probs=102.6
Q ss_pred CCceEEeecccceeecCC--Cc-----------------ccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRS--AA-----------------EQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKL 197 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~--~~-----------------~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~ 197 (360)
+|++|||||||||+|+.. .. ....+..|||+.+||++|.++|+++|||++...|++.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 589999999999999842 10 12466889999999999999999999999999999999999
Q ss_pred hCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccC
Q psy11202 198 LGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREA 275 (360)
Q Consensus 198 L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~ 275 (360)
+++.. +.+.+++.++.|... +..+.|+|+.++. ++++||+|||++..+.++|.|||.|+||.+.
T Consensus 81 l~~~~---~~f~~i~~~~d~~~~-----KP~~~k~l~~l~~------~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~ 144 (148)
T smart00577 81 LDPKK---YFGYRRLFRDECVFV-----KGKYVKDLSLLGR------DLSNVIIIDDSPDSWPFHPENLIPIKPWFGD 144 (148)
T ss_pred hCcCC---CEeeeEEECcccccc-----CCeEeecHHHcCC------ChhcEEEEECCHHHhhcCccCEEEecCcCCC
Confidence 97643 234566777665421 2238899999974 4589999999999999999999999999874
No 9
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.85 E-value=2.3e-21 Score=149.03 Aligned_cols=74 Identities=45% Similarity=0.672 Sum_probs=70.6
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
|+|+|||+|++|+|++++++||++||++|++.|||||++||||+++++|++++|+.+|++++|++|++||||||
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 57999999999999999999999999999999999999999996555899999999999999999999999997
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.77 E-value=4.7e-19 Score=173.65 Aligned_cols=153 Identities=22% Similarity=0.335 Sum_probs=127.9
Q ss_pred CCCCCceEEeecccceeecCCC----------------cccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHH
Q psy11202 134 PRPGKKLLVLDIDYTLFDHRSA----------------AEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKL 197 (360)
Q Consensus 134 ~~~~kk~LVLDLD~TLv~~~~~----------------~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~ 197 (360)
+...+++|++|||+||+|+... ...+++.+||+|++|+..+++.|++++||++...|++++++.
T Consensus 208 ~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~ 287 (390)
T COG5190 208 STSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDI 287 (390)
T ss_pred CCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHh
Confidence 4458899999999999998641 124688999999999999999999999999999999999999
Q ss_pred hCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcC
Q psy11202 198 LGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHL 277 (360)
Q Consensus 198 L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~ 277 (360)
|+-.. .+...+.+.+|.. ..|. |+|||..+++.+ ..||+||++|..+.++|+|+|+|++|..
T Consensus 288 l~~~k----~~~~~lfr~sc~~----~~G~-~ikDis~i~r~l------~~viiId~~p~SY~~~p~~~i~i~~W~~--- 349 (390)
T COG5190 288 LDSDK----VFSHRLFRESCVS----YLGV-YIKDISKIGRSL------DKVIIIDNSPASYEFHPENAIPIEKWIS--- 349 (390)
T ss_pred ccccc----eeehhhhccccee----ccCc-hhhhHHhhccCC------CceEEeeCChhhhhhCccceeccCcccc---
Confidence 84332 3333344555542 3355 999999998776 7899999999999999999999999975
Q ss_pred CCCCchHHHHHHHHHHhccC--CCCCchhc
Q psy11202 278 NRGSDRELKRLGRYLDEIAT--VEDLTALN 305 (360)
Q Consensus 278 ~~~~D~~L~~L~~~L~~la~--~~DVr~~~ 305 (360)
+..|++|..|+++|+.|+. +.||+...
T Consensus 350 -d~~d~el~~ll~~le~L~~~~~~d~~~~l 378 (390)
T COG5190 350 -DEHDDELLNLLPFLEDLPDRDLKDVSSIL 378 (390)
T ss_pred -cccchhhhhhcccccccccccchhhhhhh
Confidence 4789999999999999996 89998865
No 11
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.65 E-value=4.2e-16 Score=118.18 Aligned_cols=70 Identities=30% Similarity=0.431 Sum_probs=68.0
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
|+|+|||+|+.+++++++++||.+||++|++.||+||++|+|+ ++|+.+.|+.+|+++|+++|++|+|||
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLI---FKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEe---eCCcccCccCcHHHcCCCCCCEEEEec
Confidence 5799999999999999999999999999999999999999999 999999999999999999999999998
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.52 E-value=3.3e-14 Score=108.93 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=65.8
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|.|+|+. .|+++.+++++++||++||++|++..|+||++|||+ ++|++++|+.+|+++||++|++|+|-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi---~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK---KWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---eCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 47888997 589999999999999999999999999999999999 99999999999999999999999874
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.48 E-value=7.4e-14 Score=107.08 Aligned_cols=72 Identities=28% Similarity=0.366 Sum_probs=66.5
Q ss_pred EEEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 5 LNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 5 i~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
|.|.|| ..|+++.++|++++||++||++|++.+|+|++.|+|+ |+|+.+.|+.+|+++||++|++|+|+..+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~---~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL---FKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE---ECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 357778 4788999999999999999999999999999999999 99999999999999999999999988643
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.47 E-value=1.7e-13 Score=106.27 Aligned_cols=73 Identities=33% Similarity=0.389 Sum_probs=67.3
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCcc
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQ 81 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~~ 81 (360)
|+|+||. +|+.++|++++++||++||++|++.+|+|+++|+|+ |+|+.+.|+ +|+++||++|++|+||-+.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~---~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~ 75 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL---HRETRLSSG-KLQDLGLGDGSKLTLVPTVEA 75 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE---ECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence 6788886 588899999999999999999999999999999999 999999999 899999999999999876543
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.46 E-value=1.6e-13 Score=105.78 Aligned_cols=71 Identities=32% Similarity=0.471 Sum_probs=66.0
Q ss_pred EEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCC--CccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 6 NLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGV--NPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 6 ~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgV--p~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
.|.|+ ++|+.+.+++++++||.+||++|++.+|+ |+++|+|+ |+|+.|.|+.+|+++|+++|++|+++.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~---~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI---YSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE---ECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 46777 47889999999999999999999999999 99999999 99999999999999999999999998764
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.45 E-value=2.7e-13 Score=105.62 Aligned_cols=72 Identities=29% Similarity=0.384 Sum_probs=66.8
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeee--eccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKL--LNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKL--lgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
|.|+||- +|+++.+++++++||++||++|++.+|+|+++|+| + ++|+.+.|+.+|+++|+++|++|.|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~---~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHL---DSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEec---cCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7788885 68999999999999999999999999999999999 7 89999999999999999999999988654
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.43 E-value=3.6e-13 Score=102.09 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=64.9
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|+|.||+ .|+.+++++++++||++||++|++.+|+||++|+|+ |+|+++.|+.+|+++|+++|++|+|+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI---YSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 4688887 578899999999999999999999999999999999 99999999999999999999999886
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.40 E-value=6.2e-13 Score=100.19 Aligned_cols=65 Identities=32% Similarity=0.514 Sum_probs=62.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
.|+.|++++++++||.+||++|++.+|+|++.|+|+ |+|+.+.|+.+|+++||++|++|+|+..+
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~---~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI---YNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE---ETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceee---eeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 588999999999999999999999999999999999 99999999999999999999999998764
No 19
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.40 E-value=6e-13 Score=102.08 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=63.6
Q ss_pred EEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 6 NLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 6 ~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
.|.||- +++++++|++++||++||++|++.+|||++.|+|+ |+|+.+.|+.+|++++++++++|.|+..
T Consensus 2 qi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li---~~Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 2 QLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL---LAGVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred EEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE---ECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 467776 47899999999999999999999999999999999 9999999999999999999999988743
No 20
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.40 E-value=5.2e-13 Score=101.46 Aligned_cols=66 Identities=29% Similarity=0.493 Sum_probs=62.2
Q ss_pred EEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+||. +|+++++++++++||++||++|++..|+|++.|+|+ |+|++|+|+.+|+++++++|.+|.||
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li---~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF---FSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE---ECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4563 688999999999999999999999999999999999 99999999999999999999999987
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.39 E-value=6.1e-13 Score=102.63 Aligned_cols=67 Identities=28% Similarity=0.279 Sum_probs=63.2
Q ss_pred EECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 10 KWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 10 k~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
|-+|+++++++++++||++||++|++.||||+++|+|+ |+|+.++|+.+|++++|.+|++|+|+...
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ---YEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 34799999999999999999999999999999999999 99999999999999999999999998654
No 22
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.37 E-value=1.2e-12 Score=101.55 Aligned_cols=72 Identities=26% Similarity=0.291 Sum_probs=64.5
Q ss_pred EEEEEE-CCeE-EEEE-eCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCc
Q psy11202 6 NLIIKW-NSKE-YKTS-LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 6 ~i~vk~-~g~~-~~i~-v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~ 80 (360)
.|.||. .|++ +.++ ++++.||++||++|++.+|||++.|||+ |+|+.++|+.+|+++||++|++|.||-..+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi---~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLF---YRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE---eCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 477775 5665 6896 8999999999999999999999999999 999999999999999999999999986544
No 23
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.36 E-value=1.1e-12 Score=100.59 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=63.2
Q ss_pred EEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 7 LIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 7 i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
|.|| +.|+++++++++++||++||++|++.+|+|+++|+|+ |+|+.|.|+.+|+++||++|++|.|+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS---FEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE---ECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 3566 4788999999999999999999999999999999999 999999999999999999999998864
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.35 E-value=1.6e-12 Score=98.54 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=62.9
Q ss_pred EEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 8 IIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 8 ~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.|| ..|+++.+++++++||++||++|++.+|+|++.|+|+ |+|+.+.|+.+|+++||++|++++|+.
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li---~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI---FAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE---ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 456 4788999999999999999999999999999999999 999999999999999999999999874
No 25
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.33 E-value=4e-12 Score=97.36 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=65.6
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
|.|.|+. .|+++.++++++.||++||++|++.+|+||++|+|+ |.|+.+.|+.+|+++++++|++|+|+-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~---~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE---ECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 3578885 688999999999999999999999999999999999 9999999999999999999999998754
No 26
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.33 E-value=2.9e-12 Score=97.44 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=62.5
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
++|+||...+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|.|+.+|+++|+++|++|.|+
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li---~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLI---FAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEE---ECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 3577886433568999999999999999999999999999999 99999999999999999999999886
No 27
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.32 E-value=4.1e-12 Score=103.73 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=67.1
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.|.|.||. +|+++.++|++++||++||++|++..|+|++.|||+ |+|+.|+|+.+|++++|++|++|.|+-
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi---~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI---WNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---ECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 58899996 788999999999999999999999999999999999 999999999999999999999998864
No 28
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.31 E-value=3.3e-12 Score=97.23 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCc-cccccccCCCCCEEEE
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD-TKLADTNATDGFKLMV 75 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~-~~L~~~~l~~g~~i~l 75 (360)
+|+++.+++++++||++||++|++.+|||++.|+|+ |+|+.+.|+ .+|+++|+++|++|+|
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li---~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLI---YNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE---ECCeEccCCcccHHHcCCCCCCEEEE
Confidence 688899999999999999999999999999999999 999999987 5899999999999875
No 29
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.31 E-value=4.7e-12 Score=96.95 Aligned_cols=71 Identities=25% Similarity=0.411 Sum_probs=65.5
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
|.|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.+.|+.+|+++++++|++|+++-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE---ECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 3578885 688899999999999999999999999999999999 9999999999999999999999998754
No 30
>KOG0323|consensus
Probab=99.30 E-value=6.1e-12 Score=130.14 Aligned_cols=121 Identities=23% Similarity=0.310 Sum_probs=94.0
Q ss_pred ceEEeecccceeecCCC-------------cc------------------cceeecCccHHHHHHHHhcCCeEEEEcCCc
Q psy11202 139 KLLVLDIDYTLFDHRSA-------------AE------------------QGYELMRPYLHEFLTSAYKNYDIAIWSATG 187 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~-------------~~------------------~~~~~~RP~l~eFL~~l~~~yeivIwTas~ 187 (360)
..||+|||.||+|+... .+ .++++.||++++||+++.+.|++.|||.++
T Consensus 147 L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~ 226 (635)
T KOG0323|consen 147 LHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGT 226 (635)
T ss_pred ceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccc
Confidence 58999999999987531 11 268899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-CCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCe
Q psy11202 188 MKWIEEKMKLLGVTVN-PNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNG 266 (360)
Q Consensus 188 ~~ya~~il~~L~~~~~-~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ng 266 (360)
..||..|++.|++... +.-||.+ |+ ..+..-.+||..++- -+.+++|||||.+..|-.++.|.
T Consensus 227 R~YA~~i~~liDP~~~lF~dRIis---rd--------e~~~~kt~dL~~~~p-----~g~smvvIIDDr~dVW~~~~~nL 290 (635)
T KOG0323|consen 227 RDYALEIAKLIDPEGKYFGDRIIS---RD--------ESPFFKTLDLVLLFP-----CGDSMVVIIDDRSDVWPDHKRNL 290 (635)
T ss_pred hHHHHHHHHHhCCCCccccceEEE---ec--------CCCcccccccccCCC-----CCCccEEEEeCccccccCCCcce
Confidence 9999999999965432 2223322 22 223334567766642 34678999999999999999999
Q ss_pred eEecccccC
Q psy11202 267 LRIRPFREA 275 (360)
Q Consensus 267 i~I~~f~~~ 275 (360)
|.|.+|.+.
T Consensus 291 I~i~~y~yF 299 (635)
T KOG0323|consen 291 IQIAPYPYF 299 (635)
T ss_pred EEeeeeecc
Confidence 999999774
No 31
>PTZ00044 ubiquitin; Provisional
Probab=99.30 E-value=5.6e-12 Score=96.86 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=64.8
Q ss_pred EEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 6 NLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 6 ~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.|.||. .|++++++++++.||++||++|++.+|+|++.|+|+ |+|+.+.|+.+|+++++++|++|+|+-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI---YSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE---ECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 477885 889999999999999999999999999999999999 999999999999999999999998874
No 32
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.30 E-value=5.4e-12 Score=97.70 Aligned_cols=70 Identities=27% Similarity=0.232 Sum_probs=61.3
Q ss_pred EEEEEEE-CCeEEE--EEeCCCCCHHHHHHHHHHHhC--CCccCeeeeccccCCCCCCCcccccccc--CCCCCEEEEEc
Q psy11202 5 LNLIIKW-NSKEYK--TSLSKSNTVLELKQEILKQTG--VNPERQKLLNLKHAGKIPSDDTKLADTN--ATDGFKLMVMG 77 (360)
Q Consensus 5 i~i~vk~-~g~~~~--i~v~~~~Tv~~LK~~I~~~tg--Vp~~rQKLlgl~~kgk~l~D~~~L~~~~--l~~g~~i~l~g 77 (360)
|+|+||. ++++++ |++++++||++||++|++..+ .||++|||| |+||+|+|+.+|++++ +.+|.+|+|+-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI---y~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI---YSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE---EcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 7899997 677744 555899999999999999885 458999999 9999999999999995 99999999874
No 33
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.28 E-value=6.6e-12 Score=92.46 Aligned_cols=64 Identities=38% Similarity=0.496 Sum_probs=60.0
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCC
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGF 71 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~ 71 (360)
|.|.|++.++.+.+++++++||++||++|++.+|+|+++|+|+ ++|+.+.|+.+|+++|+++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~---~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLI---YKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCEECCCCCCHHHcCCcCCC
Confidence 4689999877899999999999999999999999999999999 999999999999999999885
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.17 E-value=7.9e-11 Score=87.86 Aligned_cols=66 Identities=39% Similarity=0.564 Sum_probs=61.9
Q ss_pred EEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 9 IKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 9 vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
|++ .|+.+.+++++++||.+||++|++.+|+|+++|+|+ ++|+.+.|+.+|+++++++|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~---~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI---YAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 565 488899999999999999999999999999999999 999999999999999999999999886
No 35
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=6.2e-11 Score=117.30 Aligned_cols=74 Identities=30% Similarity=0.406 Sum_probs=68.5
Q ss_pred EEEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhC---CCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCc
Q psy11202 5 LNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTG---VNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 5 i~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tg---Vp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~ 80 (360)
|+|+|| ..|++|.|+|++++||.+||++|++.+| +|+++|||+ |+||+|+|+.+|++++|++|++|++|.+..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI---y~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI---YSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE---ECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 468888 5889999999999999999999999999 999999999 999999999999999999999999887765
Q ss_pred c
Q psy11202 81 Q 81 (360)
Q Consensus 81 ~ 81 (360)
.
T Consensus 78 k 78 (378)
T TIGR00601 78 K 78 (378)
T ss_pred C
Confidence 4
No 36
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.04 E-value=2.8e-10 Score=87.06 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHhC--CC-ccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 21 SKSNTVLELKQEILKQTG--VN-PERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 21 ~~~~Tv~~LK~~I~~~tg--Vp-~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
+.++||.+||++|++.+| ++ +++|||+ |+|+.|+|+.+|+++||++|++|+|+-
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLI---y~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLI---HCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEE---eCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 346899999999999974 75 9999999 999999999999999999999999873
No 37
>KOG0010|consensus
Probab=98.99 E-value=5.8e-10 Score=111.17 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=70.0
Q ss_pred eEEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCc
Q psy11202 4 SLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 4 ~i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~ 80 (360)
.|+|+||..+.+|+|.|+.++||.+||+.|...+++++++|+|| |.||+|+|+.+|..+||++|.+|+||-...
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI---faGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI---YAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee---ecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 48999999988999999999999999999999999999999999 999999999999999999999999885443
No 38
>KOG0011|consensus
Probab=98.95 E-value=9.5e-10 Score=104.64 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=70.3
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhC--CCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCcc
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTG--VNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQ 81 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tg--Vp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~~ 81 (360)
|+|+||. .+++|+|++.++.||.++|.+|+..+| .|++.|||| |.||+|+|++++.++++++++.|.+|.|...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLI---y~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLI---YSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheee---ecceeccCCcchhhhccccCceEEEEEecCc
Confidence 4689995 888999999999999999999999999 999999999 9999999999999999999999999999885
No 39
>KOG0005|consensus
Probab=98.94 E-value=1.1e-09 Score=78.59 Aligned_cols=68 Identities=26% Similarity=0.413 Sum_probs=63.1
Q ss_pred EEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 6 NLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 6 ~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
.|+||. .|+.++|+++++++|..+|+.+++.-||||..|+|+ |.||.+.|+.+-..+++.-|+.++++
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli---~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhh---hccccccccccHHHhhhccceeEeeC
Confidence 477885 788999999999999999999999999999999999 99999999999999999999988764
No 40
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.93 E-value=2.1e-09 Score=82.77 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=53.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCC-CCccccccccCC-CCCEEEE
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIP-SDDTKLADTNAT-DGFKLMV 75 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l-~D~~~L~~~~l~-~g~~i~l 75 (360)
+|.++.++++++.||++||++|++.+|+||++|+|. .|+.+ +|+.+|+++|++ +|++++|
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL~----~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWV----IGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE----cCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 567789999999999999999999999999999984 67666 466899999999 8898876
No 41
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.88 E-value=1.1e-08 Score=80.40 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=57.6
Q ss_pred EEEEEEEC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCC------CCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWN--SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGK------IPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~--g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk------~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
++|.|++. ....+..++++.||.+||++|+..||+||+.|+|.- +.|+ +.+|+.+|+.+|+++|..|+++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l--~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQL--FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEE--EcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 56666665 333455599999999999999999999999999941 5555 3467789999999999999987
Q ss_pred c
Q psy11202 77 G 77 (360)
Q Consensus 77 g 77 (360)
=
T Consensus 80 D 80 (84)
T cd01789 80 D 80 (84)
T ss_pred e
Confidence 4
No 42
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.86 E-value=6.2e-09 Score=92.84 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=89.4
Q ss_pred CceEEeecccceeecCCC-------------------cccceeecCccHHHHHHHHhc-CCeEEEEcCC-cHHHHHHHHH
Q psy11202 138 KKLLVLDIDYTLFDHRSA-------------------AEQGYELMRPYLHEFLTSAYK-NYDIAIWSAT-GMKWIEEKMK 196 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~-------------------~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas-~~~ya~~il~ 196 (360)
.+++|||||+||+.+... .....+..+||+.++|++|.+ ++.++|-|++ ...++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 468999999999976431 123467889999999999986 8999999998 9999999999
Q ss_pred HhCCC-CCCCce----EEEEEecCCceeecccccCcceeeechhhcccCC-----CCCCCCcEEEEeCCchhhccCCCCe
Q psy11202 197 LLGVT-VNPNYK----IAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFP-----SLYNPTNTIMFDDIRRNFLMNPRNG 266 (360)
Q Consensus 197 ~L~~~-~~~~~~----i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~-----~~~~~~ntIivDD~~~~~~~~p~Ng 266 (360)
.+++. ....+. +..++..+ .. ..-|+...++...- + .++++||+|||++..+.....+|
T Consensus 82 ~~~l~~~~~~~~~~~~Fd~iv~~~--------~~--~~~kp~~~i~~~~~~~~~~g-l~p~e~l~VgDs~~di~aA~~aG 150 (174)
T TIGR01685 82 TFEITYAGKTVPMHSLFDDRIEIY--------KP--NKAKQLEMILQKVNKVDPSV-LKPAQILFFDDRTDNVREVWGYG 150 (174)
T ss_pred hCCcCCCCCcccHHHhceeeeecc--------CC--chHHHHHHHHHHhhhcccCC-CCHHHeEEEcChhHhHHHHHHhC
Confidence 99874 111111 11111111 11 12455555554321 2 67899999999999999999999
Q ss_pred eEeccccc
Q psy11202 267 LRIRPFRE 274 (360)
Q Consensus 267 i~I~~f~~ 274 (360)
+.+.-+..
T Consensus 151 i~~i~v~~ 158 (174)
T TIGR01685 151 VTSCYCPS 158 (174)
T ss_pred CEEEEcCC
Confidence 98876643
No 43
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.84 E-value=5.7e-09 Score=83.04 Aligned_cols=60 Identities=30% Similarity=0.323 Sum_probs=54.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCc-cccccccCCCCCEEEEEc
Q psy11202 15 EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD-TKLADTNATDGFKLMVMG 77 (360)
Q Consensus 15 ~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~-~~L~~~~l~~g~~i~l~g 77 (360)
...++|++++||.+||.+|....+|+|..|||+ +.|+.|.|+ .+|+++||.+|+.|+|.-
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~---~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLS---IDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceee---ecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 467889999999999999999999999999999 789877765 799999999999999884
No 44
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.81 E-value=2e-08 Score=79.41 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=66.1
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.|+|.|+. .|+...+.|.+++|+..||.++++..|+|+++|+|+ |.|+.+.++.++.++++.+|++|.++.
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~---f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFL---FDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEE---ECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 48888886 488889999999999999999999999999999999 999999999999999999999998764
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.78 E-value=2e-08 Score=79.39 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=58.8
Q ss_pred eEEEEEEECCe---EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccc-cCC----CCCCCccccccccCCCCCEEEE
Q psy11202 4 SLNLIIKWNSK---EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLK-HAG----KIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~~g~---~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~-~kg----k~l~D~~~L~~~~l~~g~~i~l 75 (360)
+|+|.|.+... ..+..++.+.||++||.+|+..||+||+.|+|.... -.+ ....|..+|+.+|+++|..|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 47889998766 788999999999999999999999999999998210 112 1345678999999999999998
Q ss_pred Ec
Q psy11202 76 MG 77 (360)
Q Consensus 76 ~g 77 (360)
+=
T Consensus 81 ~D 82 (87)
T PF14560_consen 81 VD 82 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 46
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.59 E-value=4.5e-08 Score=82.84 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=48.8
Q ss_pred ceEEeecccceeecCCCccccee-----ecCccHHHHHHHHhc-CCeEEEEcCC-cHHHHHHHHHHhC
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYE-----LMRPYLHEFLTSAYK-NYDIAIWSAT-GMKWIEEKMKLLG 199 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~-----~~RP~l~eFL~~l~~-~yeivIwTas-~~~ya~~il~~L~ 199 (360)
+++|+||||||++.......... ...||+.++|+.+.+ ++.++|.|++ ...++..+++.++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 58999999999987321000000 467999999999986 8999999999 8999999999876
No 47
>KOG0003|consensus
Probab=98.59 E-value=1.9e-08 Score=80.68 Aligned_cols=69 Identities=26% Similarity=0.373 Sum_probs=64.3
Q ss_pred EEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 6 NLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 6 ~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.|.+...|++..+++.++.||..+|+.|....|+||+.|.|+ |.|+++.|..+++++|+...++|+++-
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~---~~~k~LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHH---hcccccccCCcccccCccchhhhhhhH
Confidence 356668999999999999999999999999999999999999 999999999999999999999998763
No 48
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.52 E-value=2.8e-07 Score=69.81 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=61.8
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCc-cCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNP-ERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~-~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|+|+|+. +|+.+.+.|.++.|+..|++.+++..|+|+ +..+|+ |.|+.+.++.+++++|+.+|+.|-++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~---fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI---FDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE---ETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE---ECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5788887 467888999999999999999999999999 999999 99999999999999999999999765
No 49
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.51 E-value=2.7e-07 Score=71.25 Aligned_cols=69 Identities=30% Similarity=0.345 Sum_probs=56.3
Q ss_pred EEEEEECC-eEEE-EEe-CCCCCHHHHHHHHHHHhC-CCccCeeeeccccCCCCCCCccccccccCCCCCEEEE
Q psy11202 6 NLIIKWNS-KEYK-TSL-SKSNTVLELKQEILKQTG-VNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 6 ~i~vk~~g-~~~~-i~v-~~~~Tv~~LK~~I~~~tg-Vp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
.|.++..+ +.+. +++ ++++||.+||.+|++..+ ++++||+|. +.++|+.+.|+.+|+++|+++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~-~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLR-LEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEE-eCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 46666666 5543 443 588999999999999986 589999996 337999999999999999999999875
No 50
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.47 E-value=1.2e-07 Score=77.53 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=56.4
Q ss_pred eEEEEEEEC-C-eEEEEEeCCCCCHHHHHHHHHHH-----hCCC--ccCeeeeccccCCCCCCCcccccccc------CC
Q psy11202 4 SLNLIIKWN-S-KEYKTSLSKSNTVLELKQEILKQ-----TGVN--PERQKLLNLKHAGKIPSDDTKLADTN------AT 68 (360)
Q Consensus 4 ~i~i~vk~~-g-~~~~i~v~~~~Tv~~LK~~I~~~-----tgVp--~~rQKLlgl~~kgk~l~D~~~L~~~~------l~ 68 (360)
.+.|++... | ..-+..+++++||++||++|++. .|+| ++.|||| |+||+|.|+.+|++++ +.
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI---ysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI---SAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE---eCCeecCCCCcHHHhCCcccccCC
Confidence 456666643 3 33457788999999999999944 4566 9999999 9999999999999999 44
Q ss_pred CCCEEEEEccC
Q psy11202 69 DGFKLMVMGSL 79 (360)
Q Consensus 69 ~g~~i~l~gs~ 79 (360)
...+|+|+--+
T Consensus 81 ~~~TmHvvlr~ 91 (113)
T cd01814 81 GVITMHVVVQP 91 (113)
T ss_pred CceEEEEEecC
Confidence 45677766433
No 51
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.43 E-value=3.5e-07 Score=86.69 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
+...||+.++|+.|.. +|.++|-|+++..++..+++.+|+..++.. ++..+. .+ ..|+-..++..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~----ii~~~d--------~~--~~KP~Pe~~~~ 173 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSV----VLAAED--------VY--RGKPDPEMFMY 173 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcE----EEeccc--------CC--CCCCCHHHHHH
Confidence 3458999999999986 799999999999999999999987665432 222221 11 13554444411
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEeccccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFRE 274 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~ 274 (360)
..+ .++++||+|+|+...+......|+.+..+.+
T Consensus 174 a~~~l~-~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 174 AAERLG-FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred HHHHhC-CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 113 5679999999999999999999987766643
No 52
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.43 E-value=7.2e-07 Score=69.48 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=45.3
Q ss_pred CCceEEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCC--CCccccccccCCCCCEEEE
Q psy11202 1 MGDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIP--SDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 1 m~~~i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l--~D~~~L~~~~l~~g~~i~l 75 (360)
|...|-|+|......+.|++++++|+.+|+++|++.+++|+..|.|.--.-....+ .+..+|+++||+-|+-|.|
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 77789999999999999999999999999999999999999999885111111223 4568999999999998875
No 53
>KOG0004|consensus
Probab=98.39 E-value=2.2e-07 Score=79.74 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=61.9
Q ss_pred EEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 7 LIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 7 i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|.|++ -+++...++.+++||..+|++|+...||||+.|+|+ |.|+.|.|..+|++++|+..++|.|+
T Consensus 3 ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrli---fag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 3 IFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred cchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhh---hhhcccccCCccccccccccceEEEE
Confidence 67776 456788899999999999999999999999999999 99999999999999999999999876
No 54
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.38 E-value=9.3e-07 Score=74.47 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=76.4
Q ss_pred ceEEeecccceeecCCCccc-ceeecCccHHHHHHHHhc-CCeEEEEcCCc--------HHHHHHHHHHhCCCCCCCceE
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQ-GYELMRPYLHEFLTSAYK-NYDIAIWSATG--------MKWIEEKMKLLGVTVNPNYKI 208 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~-~~~~~RP~l~eFL~~l~~-~yeivIwTas~--------~~ya~~il~~L~~~~~~~~~i 208 (360)
++|+||+||||++....... ......|++.++|++|.+ +|.++|-|.+. ..++..+++.+++.. .
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~----~- 75 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPI----D- 75 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCE----E-
Confidence 57999999999963211111 245778999999999986 79999999999 889999999987631 1
Q ss_pred EEEEecCCceeecccccCcceeeechhhc----ccCCCCCCCCcEEEEeC-CchhhccCCCCeeEe
Q psy11202 209 AFYVDYSAMISVHLPKYGVVEVKPLGVIW----GKFPSLYNPTNTIMFDD-IRRNFLMNPRNGLRI 269 (360)
Q Consensus 209 ~~vl~~~~~~~~~~~~~g~~~~KdL~~l~----~~~~~~~~~~ntIivDD-~~~~~~~~p~Ngi~I 269 (360)
+.+... + ..|+-..++ +.+.+ .+++++++|+| +...+.....+|+..
T Consensus 76 -~~~~~~----------~--~~KP~~~~~~~~~~~~~~-~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 76 -VLYACP----------H--CRKPKPGMFLEALKRFNE-IDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred -EEEECC----------C--CCCCChHHHHHHHHHcCC-CChhheEEEcCCCcccHHHHHHCCCeE
Confidence 111110 1 124433333 22212 57799999999 688777777777653
No 55
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.34 E-value=1.1e-06 Score=81.40 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=68.3
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
...||+.++|+.+.+ +|.++|-|+++..++..+++.+|+..++...+ + . ...+. .|+-+.++..
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv-~---s--------~~~~~--~KP~p~~~~~~ 158 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLL-S---T--------HTFGY--PKEDQRLWQAV 158 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEE-E---e--------eeCCC--CCCCHHHHHHH
Confidence 357999999999987 89999999999999999999998766543221 1 1 11221 4665544421
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeE
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLR 268 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~ 268 (360)
..+ .++++|++|+|++..+.....+|+.
T Consensus 159 ~~~~~-~~p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 159 AEHTG-LKAERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred HHHcC-CChHHEEEEcCCHHHHHHHHHcCCe
Confidence 113 5679999999999999888888986
No 56
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.34 E-value=6.2e-07 Score=81.72 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=68.3
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc--
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW-- 237 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~-- 237 (360)
+...||+.++|+.+.+ ++.++|-|++...++..+++.+|+..++. +++..+.+ + ..|+-...+
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~----~i~~~~~~--------~--~~Kp~p~~~~~ 146 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFD----VVITLDDV--------E--HAKPDPEPVLK 146 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhcee----EEEecCcC--------C--CCCCCcHHHHH
Confidence 3467999999999986 89999999999999999999998865432 33332221 1 123323222
Q ss_pred --ccCCCCCCCCcEEEEeCCchhhccCCCCeeEecc
Q psy11202 238 --GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRP 271 (360)
Q Consensus 238 --~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~ 271 (360)
+.+ + .+++++++|+|++.-+.+...+|++...
T Consensus 147 ~~~~~-~-~~~~~~~~iGDs~~Di~aa~~aG~~~i~ 180 (214)
T PRK13288 147 ALELL-G-AKPEEALMVGDNHHDILAGKNAGTKTAG 180 (214)
T ss_pred HHHHc-C-CCHHHEEEECCCHHHHHHHHHCCCeEEE
Confidence 222 2 4679999999999999888888987543
No 57
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.34 E-value=6.9e-07 Score=88.79 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
...||+.+||++|.+ ++.++|-|++...+++.+++.+|+..++. +++..+. .+ ..|+-..++..
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd----~Iv~sdd--------v~--~~KP~Peifl~A 281 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFS----VIVAAED--------VY--RGKPDPEMFIYA 281 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHce----EEEecCc--------CC--CCCCCHHHHHHH
Confidence 457999999999987 89999999999999999999998876543 2222221 11 13555544421
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ .++++||+|+|++..+......|+....+.
T Consensus 282 ~~~lg-l~Peecl~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 282 AQLLN-FIPERCIVFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred HHHcC-CCcccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 123 567999999999999998888998777664
No 58
>PLN02560 enoyl-CoA reductase
Probab=98.29 E-value=1.7e-06 Score=83.85 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=56.0
Q ss_pred EEEEEE-CCeEE---EEEeCCCCCHHHHHHHHHHHhCC-CccCeeeecc----ccCCCCCCCccccccccCCCCCEEEE
Q psy11202 6 NLIIKW-NSKEY---KTSLSKSNTVLELKQEILKQTGV-NPERQKLLNL----KHAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 6 ~i~vk~-~g~~~---~i~v~~~~Tv~~LK~~I~~~tgV-p~~rQKLlgl----~~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
+|+|+- +|+.+ +|++++++||++||.+|++..++ +++||+|+-. +-+|+.++|+.+|+++|+++|++|++
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 355554 35665 79999999999999999999987 8999999811 01244788889999999999999875
No 59
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.29 E-value=2.2e-06 Score=74.01 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=78.8
Q ss_pred ceEEeecccceeecCCCcc---cceeecCccHHHHHHHHhc-CCeEEEEcCCcH---------------HHHHHHHHHhC
Q psy11202 139 KLLVLDIDYTLFDHRSAAE---QGYELMRPYLHEFLTSAYK-NYDIAIWSATGM---------------KWIEEKMKLLG 199 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~---~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~---------------~ya~~il~~L~ 199 (360)
++|+||+||||++..+..+ .......|++.++|++|.+ +|.++|-|+... ..+..+++.++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 5799999999998875222 1235678999999999986 899999999873 56777888876
Q ss_pred CCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC---CCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 200 VTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF---PSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 200 ~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
+.. ...+ .... . .....+ ..|+-..+|... -+ .+++++|+|+|+..-+......|+..
T Consensus 81 l~~----~~~~--~~~~-~--~~~~~~--~~KP~~~~~~~~~~~~~-~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 81 VAV----DGVL--FCPH-H--PADNCS--CRKPKPGLILEALKRLG-VDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred Cce----eEEE--ECCC-C--CCCCCC--CCCCCHHHHHHHHHHcC-CChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 531 1111 1100 0 001111 236666565321 13 67899999999988887777777654
No 60
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.28 E-value=1.8e-06 Score=82.50 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=55.8
Q ss_pred CCCceEEeecccceeecCCCcccceeecC-ccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCC
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMR-PYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNP 204 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~R-P~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~ 204 (360)
+.++++|+||||||+... ..+..| |++.++|++|.+ ++.++|||++...++...++.+|+..++
T Consensus 124 ~~~kvIvFDLDgTLi~~~-----~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDE-----EPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCC-----CccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 367799999999999653 345678 999999999998 7999999999999999999999987554
No 61
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.28 E-value=1.1e-06 Score=80.05 Aligned_cols=96 Identities=19% Similarity=0.132 Sum_probs=66.8
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
...|++.+||++|.+ ++.++|.|++...++..+++.+|+..++...+ .. ...| ..|+-..++..
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~----~~--------~~~~--~~KP~~~~~~~~ 159 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVI----TS--------EEEG--VEKPHPKIFYAA 159 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEE----Ee--------ccCC--CCCCCHHHHHHH
Confidence 568999999999987 69999999999999999999998765543221 11 1122 24554444421
Q ss_pred --CCCCCCCCcEEEEeCCc-hhhccCCCCeeEeccc
Q psy11202 240 --FPSLYNPTNTIMFDDIR-RNFLMNPRNGLRIRPF 272 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~-~~~~~~p~Ngi~I~~f 272 (360)
.-+ .+++++|+|.|++ ..+......|+...-+
T Consensus 160 ~~~~~-~~~~~~~~igDs~~~di~~A~~aG~~~i~~ 194 (221)
T TIGR02253 160 LKRLG-VKPEEAVMVGDRLDKDIKGAKNLGMKTVWI 194 (221)
T ss_pred HHHcC-CChhhEEEECCChHHHHHHHHHCCCEEEEE
Confidence 113 5678999999998 5666666777665433
No 62
>PRK11587 putative phosphatase; Provisional
Probab=98.26 E-value=1.6e-06 Score=79.50 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=67.9
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
+...||+.+||++|.+ ++.++|-|+++..++..+++..++. .+. .++..+. .+ ..|+-+..+..
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~-~~~----~i~~~~~--------~~--~~KP~p~~~~~ 146 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP-APE----VFVTAER--------VK--RGKPEPDAYLL 146 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC-Ccc----EEEEHHH--------hc--CCCCCcHHHHH
Confidence 3458999999999986 8999999999999998888887652 221 2222211 11 13554444421
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
.-+ .+++++|+|+|++.........|+...-+.
T Consensus 147 ~~~~~g-~~p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 147 GAQLLG-LAPQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred HHHHcC-CCcccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 112 567999999999999988888898766664
No 63
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.26 E-value=1e-06 Score=82.61 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=70.3
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
+...||+.++|++|.+ +|.++|-|+++..+++.+++.+|+..++... +..+. .+ ..|+-..++..
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~i----v~~~~--------~~--~~KP~p~~~~~ 172 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAV----IIGSE--------CE--HAKPHPDPYLK 172 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEE----EecCc--------CC--CCCCChHHHHH
Confidence 3457899999999976 8999999999999999999999887655432 22221 11 13554433311
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ .+++++|+|+|++.-......+|++..-+.
T Consensus 173 a~~~~~-~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 173 ALEVLK-VSKDHTFVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred HHHHhC-CChhHEEEEcCCHHHHHHHHHCCCEEEEEe
Confidence 112 467999999999999988888998766553
No 64
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.24 E-value=1.3e-06 Score=80.77 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=68.2
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
....||+.++|+.|.+ ++.++|-|+++..++..+++.+++..++.+ +...+. .+ ..|+-+.++..
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~----i~~~~~--------~~--~~KP~p~~~~~ 159 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAV----LIGGDT--------LA--ERKPHPLPLLV 159 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccE----EEecCc--------CC--CCCCCHHHHHH
Confidence 4568999999999987 799999999999999999999987554321 212111 11 13554444321
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
..+ .+++++++|+|++....+....|+.....
T Consensus 160 ~~~~l~-~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 160 AAERIG-VAPTDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred HHHHhC-CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 112 56799999999998888877788775433
No 65
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.24 E-value=5.6e-06 Score=67.69 Aligned_cols=61 Identities=28% Similarity=0.321 Sum_probs=55.9
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCC
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNAT 68 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~ 68 (360)
+=|.|+.++-+|-++..+++||.+||+.|+..+.+||+.|+|+ ..+.++.|+.+|+++|+.
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~---kd~qvLeD~kTL~d~g~t 63 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY---KDDQLLDDGKTLGDCGFT 63 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee---cCceeecccccHHHcCcc
Confidence 5678888898999999999999999999999999999999998 466789999999999993
No 66
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.24 E-value=1.2e-06 Score=79.36 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=69.9
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc--
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW-- 237 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~-- 237 (360)
....||+.++|+.+.+ ++.++|-|+++..+++.+++.+|+..++.. +...+ ..+ ..|+-+.++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~----~~~~~--------~~~--~~Kp~p~~~~~ 149 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSV----LIGGD--------SLA--QRKPHPDPLLL 149 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcE----EEecC--------CCC--CCCCChHHHHH
Confidence 4578999999999986 799999999999999999999988655432 22211 111 134433332
Q ss_pred --ccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 238 --GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 238 --~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ + .+++++++|+|++..+.+....|++...+.
T Consensus 150 ~~~~~-~-~~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 150 AAERL-G-VAPQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred HHHHc-C-CChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 122 2 456899999999999988888898876553
No 67
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.23 E-value=1.5e-06 Score=77.19 Aligned_cols=64 Identities=30% Similarity=0.431 Sum_probs=43.8
Q ss_pred CceEEeecccceeecCCC------------------cccceeecCccHHHHHHHHhc-CCeEEEEcCC-cHHHHHHHHHH
Q psy11202 138 KKLLVLDIDYTLFDHRSA------------------AEQGYELMRPYLHEFLTSAYK-NYDIAIWSAT-GMKWIEEKMKL 197 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~------------------~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas-~~~ya~~il~~ 197 (360)
++++|||||+||+.+.-. +....+..-|++.+.|..|.. +..|+|-|.+ .+++|..+|+.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~ 82 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL 82 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh
Confidence 589999999999975321 123467889999999999997 9999999965 68899999999
Q ss_pred hCCC
Q psy11202 198 LGVT 201 (360)
Q Consensus 198 L~~~ 201 (360)
|++.
T Consensus 83 l~i~ 86 (169)
T PF12689_consen 83 LEID 86 (169)
T ss_dssp TT-C
T ss_pred cCCC
Confidence 9886
No 68
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.23 E-value=3e-06 Score=71.26 Aligned_cols=123 Identities=20% Similarity=0.146 Sum_probs=84.7
Q ss_pred eEEeecccceeecCC-----------------CcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRS-----------------AAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~-----------------~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++|||+|+||+++-. +.....+..+|++.+||.++.. +|-+..+|-.-+.-|-.+|.+|++.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~ 81 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL 81 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh
Confidence 589999999998642 1123578999999999999998 8999999999999999999999887
Q ss_pred CCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhh---ccCCCCeeEeccc
Q psy11202 202 VNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNF---LMNPRNGLRIRPF 272 (360)
Q Consensus 202 ~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~---~~~p~Ngi~I~~f 272 (360)
.++.|.+.- . .+..+....|=|..|....-+...|.++|.+||....+ ..+-+|.=.+..|
T Consensus 82 ~yFhy~Vie---P-------hP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~ 145 (164)
T COG4996 82 QYFHYIVIE---P-------HPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMW 145 (164)
T ss_pred hhEEEEEec---C-------CChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEee
Confidence 765543221 1 12222233344455543322235678999999987655 3345555545555
No 69
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.22 E-value=9.2e-07 Score=78.63 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred CccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc----cc
Q psy11202 164 RPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW----GK 239 (360)
Q Consensus 164 RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~----~~ 239 (360)
-|+ .++|.++.+.+.++|-|+++..+++.+++.+++..++. +++..+. .+ ..|+-+.++ +.
T Consensus 90 ~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd----~i~~~~~--------~~--~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 90 LPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFD----AVVAADD--------VQ--HHKPAPDTFLRCAQL 154 (188)
T ss_pred ccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHce----EEEehhh--------cc--CCCCChHHHHHHHHH
Confidence 455 47888888779999999999999999999998765543 2222221 11 246655444 22
Q ss_pred CCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 240 FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 240 ~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
+ + .++++||+|+|++..+.....+|++....
T Consensus 155 ~-~-~~~~~~l~igDs~~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 155 M-G-VQPTQCVVFEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred c-C-CCHHHeEEEeccHhhHHHHHHCCCEEEee
Confidence 2 2 46789999999999998888888875443
No 70
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.22 E-value=1.8e-06 Score=76.79 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=64.4
Q ss_pred cCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCc--ceeeechhhcccC
Q psy11202 163 MRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGV--VEVKPLGVIWGKF 240 (360)
Q Consensus 163 ~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~--~~~KdL~~l~~~~ 240 (360)
..|++.++|+.|. +.++|.|+++..++..+++.+|+..++...+.. + ..+. ...|+-+.+|...
T Consensus 85 ~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~----~--------~~~~~~~~~KP~p~~~~~~ 150 (184)
T TIGR01993 85 PDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCF----D--------TANPDYLLPKPSPQAYEKA 150 (184)
T ss_pred CCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEe----e--------cccCccCCCCCCHHHHHHH
Confidence 4688999999997 789999999999999999999886654432211 1 1111 0136655555211
Q ss_pred ---CCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 241 ---PSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 241 ---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
-+ .+++++++|+|++.........|++.
T Consensus 151 ~~~~~-~~~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 151 LREAG-VDPERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HHHhC-CCccceEEEeCCHHHHHHHHHcCCEE
Confidence 12 56799999999998887777777753
No 71
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.21 E-value=1.3e-06 Score=78.99 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=69.1
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
+...|++.++|++|.+ ++.++|.|+++..++..+++.+|+..++. +++..+. .+ ..|+-..++..
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~----~i~~~~~--------~~--~~KP~~~~~~~ 139 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFD----HVIGSDE--------VP--RPKPAPDIVRE 139 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhhee----eEEecCc--------CC--CCCCChHHHHH
Confidence 4568999999999986 89999999999999999999998765433 2222211 11 13444444321
Q ss_pred C---CCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 240 F---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 240 ~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
. .+ .++++||+|+|++..+.....+|+...-.
T Consensus 140 ~~~~~~-~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 140 ALRLLD-VPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred HHHHcC-CChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 1 12 46799999999998888888889875543
No 72
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.21 E-value=1e-06 Score=81.48 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=77.0
Q ss_pred eeecCccHHHHHHHHhcC-CeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc
Q psy11202 160 YELMRPYLHEFLTSAYKN-YDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG 238 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~~~-yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~ 238 (360)
.+...||+.+||+.|... .-+++-|+++...+..++..+|+..++...+ +.+. . ...|+-+.+|-
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v----~~~d--------v--~~~KP~Pd~yL 149 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIV----TADD--------V--ARGKPAPDIYL 149 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhc----cHHH--------H--hcCCCCCHHHH
Confidence 357799999999999984 9999999999999999999999877654332 2211 1 11377666661
Q ss_pred ---cCCCCCCCCcEEEEeCCchhhccCCCCeeEeccccc
Q psy11202 239 ---KFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFRE 274 (360)
Q Consensus 239 ---~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~ 274 (360)
...+ .+|.+||+|+|++........-|+.+.-+.+
T Consensus 150 ~Aa~~Lg-v~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 150 LAAERLG-VDPEECVVVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred HHHHHcC-CChHHeEEEecchhHHHHHHHCCCEEEEecC
Confidence 2223 6889999999999999988888988888865
No 73
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.17 E-value=2.8e-06 Score=69.77 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred eEEeecccceeecCCCcc-cceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAE-QGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVN 203 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~-~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~ 203 (360)
++|||+||||+....... ......+|++.+||+.+.+ ++.++|.|++...++..+++.+++...
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~ 66 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDY 66 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchh
Confidence 589999999998754221 1346789999999999998 599999999999999999999877433
No 74
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.17 E-value=2.4e-06 Score=75.06 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=63.7
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
+...|++.+||+.+.+ +|.++|.|++...+ ..++..+|+..++.+.+.. ...+ ..|+-..+|..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~------------~~~~--~~KP~~~~~~~ 148 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFS------------GDVG--RGKPDPDIYLL 148 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEc------------CCCC--CCCCCHHHHHH
Confidence 4568999999999987 89999999999999 7666668776554432211 1112 24554444421
Q ss_pred C---CCCCCCCcEEEEeCCchhhccCCCCeeE
Q psy11202 240 F---PSLYNPTNTIMFDDIRRNFLMNPRNGLR 268 (360)
Q Consensus 240 ~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~ 268 (360)
. .+ .+++++|+|||++.........|+.
T Consensus 149 ~~~~~~-~~~~~~~~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 149 ALKKLG-LKPEECLFVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred HHHHcC-CCcceEEEEcCCHHHHHHHHHcCCE
Confidence 1 12 5679999999999888777677764
No 75
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.17 E-value=1.7e-06 Score=77.81 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=68.6
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF 240 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~ 240 (360)
...|++.++|+++.+ +|.++|-|+++..++..+++.+|+..++.. ++.. ...|. .|+-..+|...
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~----i~~s--------~~~~~--~KP~~~~~~~~ 157 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDA----VLSA--------DAVRA--YKPAPQVYQLA 157 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhhe----eEeh--------hhcCC--CCCCHHHHHHH
Confidence 457999999999998 699999999999999999999987544332 2211 22232 46666665321
Q ss_pred ---CCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 241 ---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 241 ---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
-+ .+++++++|+|++..+......|+...
T Consensus 158 ~~~~~-~~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 158 LEALG-VPPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred HHHhC-CChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 12 567999999999988877777887643
No 76
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.15 E-value=2.4e-06 Score=78.08 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=66.6
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC--CCCCceEEEEEecCCceeecccccCcceeeechhhcc
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT--VNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG 238 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~--~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~ 238 (360)
...||+.+||+++.+ +|.++|-|++...++..+++.+++. .++. ++...+ ..+ ..|+-+.++.
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~----~i~~~~--------~~~--~~KP~p~~~~ 152 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD----AVVCPS--------DVA--AGRPAPDLIL 152 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC----EEEcCC--------cCC--CCCCCHHHHH
Confidence 578999999999975 8999999999999999999999876 4433 222211 111 2355454442
Q ss_pred cC---CCCCC-CCcEEEEeCCchhhccCCCCeeEe
Q psy11202 239 KF---PSLYN-PTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 239 ~~---~~~~~-~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
.. .+ .. ++++|+|+|++.........|+.+
T Consensus 153 ~a~~~~~-~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 153 RAMELTG-VQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred HHHHHcC-CCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 11 12 33 589999999999888888888875
No 77
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.15 E-value=4.9e-06 Score=79.63 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=55.5
Q ss_pred CCCceEEeecccceeecCCCcccceeecC-ccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCC
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMR-PYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVN 203 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~R-P~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~ 203 (360)
+.++++|+||||||+... ..+..| |++.++|++|.+ ++.++|||+++..++..+++.+|+..+
T Consensus 126 ~~~~~i~~D~D~TL~~~~-----~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~y 190 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE-----EPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGY 190 (303)
T ss_pred eeccEEEEecCCCccCCC-----CccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcc
Confidence 467899999999999753 356678 999999999998 899999999999999999999988644
No 78
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.15 E-value=1.9e-06 Score=76.18 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=63.7
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc--
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW-- 237 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~-- 237 (360)
....||+.+||+.+.+ ++.++|-|++ .+++.+++.+++..++.+.+ ..+ ..+ ..|+-+.++
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~----~~~--------~~~--~~kp~~~~~~~ 150 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIV----DAD--------EVK--EGKPHPETFLL 150 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEee----ehh--------hCC--CCCCChHHHHH
Confidence 4578999999999987 7999999988 88999999998865544322 111 111 134433332
Q ss_pred --ccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 238 --GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 238 --~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
..+ + .+++++|+|+|+.........+|++.
T Consensus 151 ~~~~~-~-~~~~~~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 151 AAELL-G-VSPNECVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred HHHHc-C-CCHHHeEEEeCcHhhHHHHHHCCCeE
Confidence 111 2 56799999999999888877777754
No 79
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.13 E-value=9.9e-07 Score=76.12 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=67.4
Q ss_pred ceeecCccHHHHHHHHh-cCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc
Q psy11202 159 GYELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW 237 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~ 237 (360)
......|++.+||..+. .++.++|.|.++..++..+++.+|+...+.. +.+ .+ ..+. .|+=..++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~-i~~---~~--------~~~~--~Kp~~~~~ 139 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDE-IIS---SD--------DVGS--RKPDPDAY 139 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSE-EEE---GG--------GSSS--STTSHHHH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccccccccccc-ccc---cc--------hhhh--hhhHHHHH
Confidence 46788999999999999 6999999999999999999999988755442 211 11 1221 34433333
Q ss_pred ----ccCCCCCCCCcEEEEeCCchhhccCCCCeeE
Q psy11202 238 ----GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLR 268 (360)
Q Consensus 238 ----~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~ 268 (360)
+.+ + .+++++|+|||++..+......|+.
T Consensus 140 ~~~~~~~-~-~~p~~~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 140 RRALEKL-G-IPPEEILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp HHHHHHH-T-SSGGGEEEEESSHHHHHHHHHTTSE
T ss_pred HHHHHHc-C-CCcceEEEEeCCHHHHHHHHHcCCe
Confidence 122 2 4679999999999888766666654
No 80
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.12 E-value=7.6e-06 Score=72.71 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=76.6
Q ss_pred ceEEeecccceeecCC-CcccceeecCccHHHHHHHHhc-CCeEEEEcCCcH---------------HHHHHHHHHhCCC
Q psy11202 139 KLLVLDIDYTLFDHRS-AAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGM---------------KWIEEKMKLLGVT 201 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~-~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~---------------~ya~~il~~L~~~ 201 (360)
+.|.||+||||+.... ......+..-||+.++|.+|.+ +|.++|.|+++. .|+..++..+++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD 81 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999994322 1122355667999999999987 799999999984 4555666665443
Q ss_pred CCCCceEEEEEecCCceeeccccc--Ccceeeechhhccc---CCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 202 VNPNYKIAFYVDYSAMISVHLPKY--GVVEVKPLGVIWGK---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 202 ~~~~~~i~~vl~~~~~~~~~~~~~--g~~~~KdL~~l~~~---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
....+.| ... ....... .....|+-..++.. ..+ .+++++++|+|++........+|+..
T Consensus 82 --~~~i~~~----~~~-~~~~~~~~~~~~~~KP~p~~~~~a~~~~~-~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 82 --LDGIYYC----PHH-PEGVEEFRQVCDCRKPKPGMLLQARKELH-IDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred --ccEEEEC----CCC-CcccccccCCCCCCCCCHHHHHHHHHHcC-cChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 1111111 000 0000000 01124665555421 113 57799999999999988888888753
No 81
>PRK09449 dUMP phosphatase; Provisional
Probab=98.12 E-value=7.5e-06 Score=74.96 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=65.9
Q ss_pred ecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC-
Q psy11202 162 LMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF- 240 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~- 240 (360)
...||+.++|++|.+.|.++|-|++...++..+++.+|+..++...+ .. ...+ ..|+-..++...
T Consensus 95 ~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~----~~--------~~~~--~~KP~p~~~~~~~ 160 (224)
T PRK09449 95 TPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRDYFDLLV----IS--------EQVG--VAKPDVAIFDYAL 160 (224)
T ss_pred ccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEE----EE--------CccC--CCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999998865543322 11 1122 146655555211
Q ss_pred --CCCCCCCcEEEEeCCch-hhccCCCCeeEec
Q psy11202 241 --PSLYNPTNTIMFDDIRR-NFLMNPRNGLRIR 270 (360)
Q Consensus 241 --~~~~~~~ntIivDD~~~-~~~~~p~Ngi~I~ 270 (360)
.+..+++++++|+|++. ........|+...
T Consensus 161 ~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i 193 (224)
T PRK09449 161 EQMGNPDRSRVLMVGDNLHSDILGGINAGIDTC 193 (224)
T ss_pred HHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEE
Confidence 11013478999999984 7777777776543
No 82
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.09 E-value=5.2e-06 Score=79.07 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=65.5
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc---
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW--- 237 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~--- 237 (360)
..+|++.++|+.+.+ ++.++|.|+++..++..+++.+++..+.. ++...+. .+ ..|+-...+
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~----~i~~~d~--------~~--~~Kp~p~~~~~~ 166 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFR----WIIGGDT--------LP--QKKPDPAALLFV 166 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCe----EEEecCC--------CC--CCCCCcHHHHHH
Confidence 458999999999986 89999999999999999999987754432 2222221 11 123332222
Q ss_pred -ccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 238 -GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 238 -~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
+.+ + .++++||+|+|+.....+...+|+..
T Consensus 167 ~~~~-g-~~~~~~l~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 167 MKMA-G-VPPSQSLFVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred HHHh-C-CChhHEEEECCCHHHHHHHHHCCCeE
Confidence 222 2 56799999999999988888888754
No 83
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.06 E-value=4.2e-06 Score=79.89 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=65.3
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeee--chhhcc
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKP--LGVIWG 238 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~Kd--L~~l~~ 238 (360)
..-||+.++|+.|.. ++.++|-|+++..+++.+++.+|+..++. ++...+. .. -|. +..+-.
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~----~vi~~~~--------~~---~k~~~~~~~l~ 206 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFS----VVQAGTP--------IL---SKRRALSQLVA 206 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheE----EEEecCC--------CC---CCHHHHHHHHH
Confidence 346999999999986 79999999999999999999998765432 2222111 00 021 111111
Q ss_pred cCCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 239 KFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 239 ~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
.+ + .++++|++|+|++.........|+.....
T Consensus 207 ~~-~-~~p~~~l~IGDs~~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 207 RE-G-WQPAAVMYVGDETRDVEAARQVGLIAVAV 238 (273)
T ss_pred Hh-C-cChhHEEEECCCHHHHHHHHHCCCeEEEE
Confidence 22 2 45689999999999888888888875443
No 84
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.05 E-value=5.2e-06 Score=76.14 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=70.2
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF 240 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~ 240 (360)
...||+.++|..+.+ +|.++|.|++...+++.+++.+++..++.. ++..+. .+ ..|+-+.++...
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~----~~~~~~--------~~--~~Kp~~~~~~~~ 157 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDA----LASAEK--------LP--YSKPHPEVYLNC 157 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccE----EEEccc--------CC--CCCCCHHHHHHH
Confidence 457899999999986 899999999999999999999987665432 222211 11 134433333211
Q ss_pred ---CCCCCCCcEEEEeCCchhhccCCCCeeEeccccc
Q psy11202 241 ---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFRE 274 (360)
Q Consensus 241 ---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~ 274 (360)
.+ .++++|++|+|++.........|++..-+..
T Consensus 158 ~~~~~-~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 158 AAKLG-VDPLTCVALEDSFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred HHHcC-CCHHHeEEEcCChhhHHHHHHcCCEEEEecC
Confidence 13 5679999999999988888888987655543
No 85
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.05 E-value=6.6e-06 Score=74.88 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=67.9
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc--
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG-- 238 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~-- 238 (360)
...+|++.++|+++.+.+.++|-|++...++..+++.+++...+.+ ++..+ ..+ ..|+=..++.
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~----i~~~~--------~~~--~~KP~~~~~~~~ 161 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDD----IFVSE--------DAG--IQKPDKEIFNYA 161 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCE----EEEcC--------ccC--CCCCCHHHHHHH
Confidence 3568999999999998899999999999999999999988665432 22221 111 1354443332
Q ss_pred --cCCCCCCCCcEEEEeCCc-hhhccCCCCeeEeccc
Q psy11202 239 --KFPSLYNPTNTIMFDDIR-RNFLMNPRNGLRIRPF 272 (360)
Q Consensus 239 --~~~~~~~~~ntIivDD~~-~~~~~~p~Ngi~I~~f 272 (360)
.+++ .+++++|+|+|++ ..+.....+|+...-+
T Consensus 162 ~~~~~~-~~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 162 LERMPK-FSKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred HHHhcC-CCchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 2213 5789999999998 5777777777654333
No 86
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.03 E-value=4.5e-06 Score=76.39 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=67.5
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc--
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG-- 238 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~-- 238 (360)
....||+.++|+.+ .+.++|-|++...+++.+++.+++..++...+. .. ...+. .|+-..++.
T Consensus 87 ~~~~~gv~~~L~~L--~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~---~~--------~~~~~--~KP~p~~~~~a 151 (221)
T PRK10563 87 LEPIAGANALLESI--TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLF---SG--------YDIQR--WKPDPALMFHA 151 (221)
T ss_pred CCcCCCHHHHHHHc--CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEe---eH--------HhcCC--CCCChHHHHHH
Confidence 35678999999999 499999999999999999999988655421111 11 11221 355554442
Q ss_pred --cCCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 239 --KFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 239 --~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
++ + .++++||+|+|++.........|+.+.-+
T Consensus 152 ~~~~-~-~~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 152 AEAM-N-VNVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred HHHc-C-CCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 22 2 45789999999999988888888876544
No 87
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.01 E-value=2.4e-05 Score=69.69 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=78.1
Q ss_pred CceEEeecccceeecCCCcc--cceeecCccHHHHHHHHhc-CCeEEEEcCCcH---------------HHHHHHHHHhC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAE--QGYELMRPYLHEFLTSAYK-NYDIAIWSATGM---------------KWIEEKMKLLG 199 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~--~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~---------------~ya~~il~~L~ 199 (360)
.|.|+||+||||+....... .......||+.++|++|.+ +|.++|-|+++. .++..+++.+|
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 58899999999986542211 1246678999999999998 799999998863 45556666665
Q ss_pred CCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC---CCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 200 VTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 200 ~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
+. +..++..... ..... ...|+-..++... .+ .+++++++|+|++.........|+.+.
T Consensus 83 ~~------f~~i~~~~~~---~~~~~--~~~KP~p~~~~~~~~~l~-~~~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 83 GR------LDGIYYCPHH---PEDGC--DCRKPKPGMLLSIAERLN-IDLAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred Cc------cceEEECCCC---CCCCC--cCCCCCHHHHHHHHHHcC-CChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 41 1112111100 00111 2256666555221 12 567999999999998888878887543
No 88
>KOG3109|consensus
Probab=98.00 E-value=2.3e-05 Score=71.47 Aligned_cols=122 Identities=25% Similarity=0.234 Sum_probs=80.7
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
+..=|-|++||-.|.+.+ .+|||.+....|..+|+.||+..=+...++|-..+ +-......|+...-+..
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~n--------p~~~~~vcKP~~~afE~a 169 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLN--------PIEKTVVCKPSEEAFEKA 169 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHhccceeEeeccC--------CCCCceeecCCHHHHHHH
Confidence 556677999999998877 89999999999999999999976666555552111 11123457888876631
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeEecccccCcCCCCCchHHHHHHHH
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRY 291 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~~~ 291 (360)
..+.-++.||++||||.++......=|+.-.=--.++.....|..|......
T Consensus 170 ~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~~~~d~~l~~ih~~ 223 (244)
T KOG3109|consen 170 MKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHKIKGVDYALEQIHNN 223 (244)
T ss_pred HHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeecccchHHHHHHhhch
Confidence 2343458999999999999988766665422111111112345666554444
No 89
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.00 E-value=1.5e-05 Score=72.76 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=65.6
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeec--hhhc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPL--GVIW 237 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL--~~l~ 237 (360)
...+|++.+||+.+.+ ++.++|-|++...++..+++.+++.......+ ..+................-|.- ..+-
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRL--EVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEE--EEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 4579999999999987 89999999999999999999998754221111 11111100000000000001211 1111
Q ss_pred ccCCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 238 GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 238 ~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
+.+ + .++++|++|+|++....+....|+.| .|
T Consensus 162 ~~~-~-~~~~~~i~iGDs~~Di~aa~~ag~~i-~~ 193 (219)
T TIGR00338 162 RKE-G-ISPENTVAVGDGANDLSMIKAAGLGI-AF 193 (219)
T ss_pred HHc-C-CCHHHEEEEECCHHHHHHHHhCCCeE-Ee
Confidence 122 2 56789999999998888777777766 45
No 90
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.97 E-value=2.2e-05 Score=69.45 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=50.7
Q ss_pred CCCCCceEEeecccceeecCCCc-c--cc--eeecCccHHHHHHHHhc-CCeEEEEcCCcHH------------HHHHHH
Q psy11202 134 PRPGKKLLVLDIDYTLFDHRSAA-E--QG--YELMRPYLHEFLTSAYK-NYDIAIWSATGMK------------WIEEKM 195 (360)
Q Consensus 134 ~~~~kk~LVLDLD~TLv~~~~~~-~--~~--~~~~RP~l~eFL~~l~~-~yeivIwTas~~~------------ya~~il 195 (360)
|.+..++++||+||||+...+.. + .. +...-|++.+.|+.|.+ +|.++|-|+.+.. +++.++
T Consensus 9 ~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l 88 (166)
T TIGR01664 9 PKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL 88 (166)
T ss_pred CCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH
Confidence 44567899999999999764311 1 11 12245999999999976 9999999997763 678889
Q ss_pred HHhCC
Q psy11202 196 KLLGV 200 (360)
Q Consensus 196 ~~L~~ 200 (360)
+.+|+
T Consensus 89 ~~~gl 93 (166)
T TIGR01664 89 EKLKV 93 (166)
T ss_pred HHcCC
Confidence 98876
No 91
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.97 E-value=9.2e-06 Score=76.07 Aligned_cols=97 Identities=7% Similarity=-0.029 Sum_probs=69.2
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc--
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG-- 238 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~-- 238 (360)
...||+.++|++|.+ ++.++|-|+++..+++.+++.+|+..++ +.+++..+. .+ ..|+-+.++.
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f---~d~ii~~~~--------~~--~~KP~p~~~~~a 165 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYR---PDYNVTTDD--------VP--AGRPAPWMALKN 165 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCC---CceEEcccc--------CC--CCCCCHHHHHHH
Confidence 347899999999987 7999999999999999999999876553 122222221 11 1355444431
Q ss_pred --cCCCCC-CCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 239 --KFPSLY-NPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 239 --~~~~~~-~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
.+ + . ++++||+|.|++.-+.....+|+....+.
T Consensus 166 ~~~l-~-~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~ 201 (253)
T TIGR01422 166 AIEL-G-VYDVAACVKVGDTVPDIEEGRNAGMWTVGLI 201 (253)
T ss_pred HHHc-C-CCCchheEEECCcHHHHHHHHHCCCeEEEEe
Confidence 11 2 3 36899999999999988888898766553
No 92
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.96 E-value=4.3e-06 Score=75.19 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=62.6
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF 240 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~ 240 (360)
+...||+.++|+.|.+.+.+++-|+++......+++.+++.......+..++..+. . . -|+ .++...
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~-------~-~---~kp--~~~~~a 139 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH-------D-E---SKE--KLFIKA 139 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc-------C-c---ccH--HHHHHH
Confidence 45799999999999987777777776666665577777665433222233322221 0 0 121 122100
Q ss_pred CCCCCCCcEEEEeCCchhhccCCCC--eeEeccccc
Q psy11202 241 PSLYNPTNTIMFDDIRRNFLMNPRN--GLRIRPFRE 274 (360)
Q Consensus 241 ~~~~~~~ntIivDD~~~~~~~~p~N--gi~I~~f~~ 274 (360)
...++++.+|+|||+.........+ |+...-+..
T Consensus 140 ~~~~~~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~ 175 (197)
T PHA02597 140 KEKYGDRVVCFVDDLAHNLDAAHEALSQLPVIHMLR 175 (197)
T ss_pred HHHhCCCcEEEeCCCHHHHHHHHHHHcCCcEEEecc
Confidence 0002357799999999999888888 988776643
No 93
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.96 E-value=1.2e-05 Score=73.37 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=65.9
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechh----
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGV---- 235 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~---- 235 (360)
...+||+.+||+.+.+ ++.++|.|++...++..+++.+++...+. +++..+. .+ ..|+-..
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~----~~~~~~~--------~~--~~kp~~~~~~~ 157 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFS----VVIGGDS--------LP--NKKPDPAPLLL 157 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCcc----EEEcCCC--------CC--CCCcChHHHHH
Confidence 5578999999999986 89999999999999999999998754322 2222221 11 1233222
Q ss_pred hcccCCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 236 IWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 236 l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
+...+ + .+++++|+|+|++..+.+....|+...
T Consensus 158 ~~~~~-~-~~~~~~i~igD~~~Di~~a~~~g~~~i 190 (226)
T PRK13222 158 ACEKL-G-LDPEEMLFVGDSRNDIQAARAAGCPSV 190 (226)
T ss_pred HHHHc-C-CChhheEEECCCHHHHHHHHHCCCcEE
Confidence 21222 2 467899999999988888777777533
No 94
>PLN02940 riboflavin kinase
Probab=97.96 E-value=7.4e-06 Score=81.89 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=68.0
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHH-HhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMK-LLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~-~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
...||+.++|++|.+ ++.++|-|+++..++..+++ .+++..++.. ++..+. .+ ..|+-+.++..
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~----ii~~d~--------v~--~~KP~p~~~~~ 158 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSV----IVGGDE--------VE--KGKPSPDIFLE 158 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCE----EEehhh--------cC--CCCCCHHHHHH
Confidence 457999999999976 79999999999999999987 5666554432 222221 11 24665555421
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
..+ .++++||+|+|++.........|+...-.
T Consensus 159 a~~~lg-v~p~~~l~VGDs~~Di~aA~~aGi~~I~v 193 (382)
T PLN02940 159 AAKRLN-VEPSNCLVIEDSLPGVMAGKAAGMEVIAV 193 (382)
T ss_pred HHHHcC-CChhHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 112 56799999999999988888888775444
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.95 E-value=1.4e-05 Score=77.87 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCceEEeecccceeecC--CCc-ccc-eeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHH----hCCCCCCCc
Q psy11202 136 PGKKLLVLDIDYTLFDHR--SAA-EQG-YELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKL----LGVTVNPNY 206 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~--~~~-~~~-~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~----L~~~~~~~~ 206 (360)
|.+|+||+|||+||+... ... ... .....|++.++|..+.+ ++.++|-|+....++..+++. +++..++.+
T Consensus 1 ~~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~ 80 (320)
T TIGR01686 1 PALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDA 80 (320)
T ss_pred CCeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeE
Confidence 468999999999999643 111 111 11246899999999987 899999999999999999998 655443221
Q ss_pred eEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhcc
Q psy11202 207 KIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLM 261 (360)
Q Consensus 207 ~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~ 261 (360)
.... |. ++ -..+..+-..+ + .+++.+|+|||++.....
T Consensus 81 ~~~~-~~---------pk-----~~~i~~~~~~l-~-i~~~~~vfidD~~~d~~~ 118 (320)
T TIGR01686 81 RSIN-WG---------PK-----SESLRKIAKKL-N-LGTDSFLFIDDNPAERAN 118 (320)
T ss_pred EEEe-cC---------ch-----HHHHHHHHHHh-C-CCcCcEEEECCCHHHHHH
Confidence 1000 00 10 11111111111 1 456899999999887654
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.94 E-value=2.9e-05 Score=54.47 Aligned_cols=63 Identities=33% Similarity=0.512 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
++....+.++++.|+.+||.+|.+.+|+++.+|+|. +.|..+.+...+..+++.+|+.|.++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLL---VNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEE---ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 477778899999999999999999999999999999 888888887777788999999998763
No 97
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.88 E-value=1.1e-05 Score=71.21 Aligned_cols=92 Identities=21% Similarity=0.141 Sum_probs=62.2
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
...|++.++|++|.+ ++.++|-|++. .+..+++.+++..++.+. +..+ ..+ ..|+-+.++..
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~----~~~~--------~~~--~~kp~p~~~~~~ 150 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAI----VDPA--------EIK--KGKPDPEIFLAA 150 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEE----Eehh--------hcC--CCCCChHHHHHH
Confidence 457999999999986 79999998763 467789998876554332 2211 111 13555544421
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
..+ .+++++|+|+|++..+.....+|++..
T Consensus 151 ~~~~~-~~~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 151 AEGLG-VSPSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred HHHcC-CCHHHeEEEecCHHHHHHHHHcCCEEE
Confidence 112 567999999999998888888887643
No 98
>PLN02954 phosphoserine phosphatase
Probab=97.86 E-value=3.9e-05 Score=70.19 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=61.3
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecC-Cceeeccccc-Ccceeeech--h
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYS-AMISVHLPKY-GVVEVKPLG--V 235 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~-~~~~~~~~~~-g~~~~KdL~--~ 235 (360)
...+||+.++|+.+.+ ++.++|-|++...+++.+++.+|+.....+-.....+.+ .++....... ....-|+.. .
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 3467999999999977 799999999999999999999987531111000111211 1111100000 000123321 1
Q ss_pred hcccCCCCCCCCcEEEEeCCchhhccCCCCeeE
Q psy11202 236 IWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLR 268 (360)
Q Consensus 236 l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~ 268 (360)
+-.. ++.+++|+|-|+..-..+...+|+.
T Consensus 163 ~~~~----~~~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKK----HGYKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHH----cCCCceEEEeCCHHHHHhhhcCCCC
Confidence 1111 2347899999999988886554444
No 99
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.86 E-value=3.4e-05 Score=67.96 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=85.0
Q ss_pred ceEEeecccceeecCCCc----ccceeecCccHHHHHHHHhc-CCeEEEEcCC---------------cHHHHHHHHHHh
Q psy11202 139 KLLVLDIDYTLFDHRSAA----EQGYELMRPYLHEFLTSAYK-NYDIAIWSAT---------------GMKWIEEKMKLL 198 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~----~~~~~~~RP~l~eFL~~l~~-~yeivIwTas---------------~~~ya~~il~~L 198 (360)
|.+.||.||||++..+.. ....+..-|++.++|++|.+ +|.++|-|+. ...++..+++.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 689999999999854311 11356778999999999987 7999999996 367889999998
Q ss_pred CCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc---CCCCCCCCcEEEEeCCchhhccCCCCeeEeccccc
Q psy11202 199 GVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFRE 274 (360)
Q Consensus 199 ~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~ 274 (360)
|+. +.. .+.... + .+... ...|+-..++.. ..+ .+++++++|.|+..-......+|+...-+..
T Consensus 82 gl~--fd~---ii~~~~--~--~~~~~--~~~KP~~~~~~~~~~~~~-~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 82 GII--FDD---VLICPH--F--PDDNC--DCRKPKIKLLEPYLKKNL-IDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCc--eeE---EEECCC--C--CCCCC--CCCCCCHHHHHHHHHHcC-CCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 774 111 111100 0 00111 124666655522 123 5678999999999888888889998777754
No 100
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.84 E-value=1.6e-05 Score=81.23 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=66.8
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF 240 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~ 240 (360)
...||+.++|+++.+ ++.++|-|+++..++..+++.+++..++.+.+ ..+. ... .-|+- ++...
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~----~~d~--------v~~-~~kP~--~~~~a 394 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETF----SIEQ--------INS-LNKSD--LVKSI 394 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeE----ecCC--------CCC-CCCcH--HHHHH
Confidence 457999999999986 89999999999999999999998866554322 2111 000 01332 11110
Q ss_pred CCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 241 PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 241 ~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
...++++++|+|.|++.-+......|+...-+
T Consensus 395 l~~l~~~~~v~VGDs~~Di~aAk~AG~~~I~v 426 (459)
T PRK06698 395 LNKYDIKEAAVVGDRLSDINAAKDNGLIAIGC 426 (459)
T ss_pred HHhcCcceEEEEeCCHHHHHHHHHCCCeEEEE
Confidence 11156689999999999998888888765433
No 101
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.82 E-value=2.6e-05 Score=69.76 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=62.1
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecc-cccCcceee--echhh
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHL-PKYGVVEVK--PLGVI 236 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~-~~~g~~~~K--dL~~l 236 (360)
+..+|++.++|+.+.+ ++.++|-|++...+++.+++.+|+..... ..+..+......... ...+ ..-| -+..+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~g~~~p~~~~~~~-~~~k~~~~~~~ 155 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYS--NELVFDEKGFIQPDGIVRVT-FDNKGEAVERL 155 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEE--EEEEEcCCCeEecceeeEEc-cccHHHHHHHH
Confidence 3458999999999986 89999999999999999999998642111 111111111111000 0000 0011 11111
Q ss_pred cccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 237 WGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 237 ~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
-..+ + .+++++++|.|+.....+....|+.+
T Consensus 156 ~~~~-~-~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 156 KREL-N-PSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HHHh-C-CCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 1111 2 35689999999998777766677754
No 102
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.82 E-value=3.2e-05 Score=73.18 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=67.1
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc--
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG-- 238 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~-- 238 (360)
..-||+.++|+.|.+ ++.++|-|+++...+..+++.+++..... .+++..+. .+ ..|+-+.++.
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~---d~i~~~~~--------~~--~~KP~p~~~~~a 167 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRP---DHVVTTDD--------VP--AGRPYPWMALKN 167 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCc---eEEEcCCc--------CC--CCCCChHHHHHH
Confidence 347899999999976 89999999999999999999887654321 12222211 11 1355444431
Q ss_pred --cCCCCC-CCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 239 --KFPSLY-NPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 239 --~~~~~~-~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
.+ + . ++++||+|+|++..+......|+...-+.
T Consensus 168 ~~~l-~-~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 168 AIEL-G-VYDVAACVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred HHHc-C-CCCCcceEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 11 2 2 24889999999999988888898765553
No 103
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.81 E-value=4e-05 Score=67.69 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=61.8
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE--EEecCCceeec--------ccccCcce
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAF--YVDYSAMISVH--------LPKYGVVE 229 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~--vl~~~~~~~~~--------~~~~g~~~ 229 (360)
...+|++.++|+.+.+ ++.++|-|++...+++.+++.+++...+...+.. +++...+.... +...| .
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g--~ 148 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG--C 148 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCC--C
Confidence 5679999999999987 7999999999999999999998775443222211 11111111110 11112 1
Q ss_pred eeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCe
Q psy11202 230 VKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNG 266 (360)
Q Consensus 230 ~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ng 266 (360)
.| ..+...+...+ ++++|+|+|+...+.+.....
T Consensus 149 ~K--~~~~~~~~~~~-~~~~i~iGD~~~D~~aa~~~d 182 (188)
T TIGR01489 149 CK--GKVIHKLSEPK-YQHIIYIGDGVTDVCPAKLSD 182 (188)
T ss_pred CH--HHHHHHHHhhc-CceEEEECCCcchhchHhcCC
Confidence 34 22322221102 588999999988876664443
No 104
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.78 E-value=2.9e-05 Score=70.52 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=62.5
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHH--HHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKW--IEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW 237 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~y--a~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~ 237 (360)
+...|++.++|+.|.+ +|.++|.|++...+ +...+..+++...+.+. +.. ...+ ..|+-..++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v----~~s--------~~~~--~~KP~p~~~ 158 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAV----VES--------CLEG--LRKPDPRIY 158 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEE----EEe--------eecC--CCCCCHHHH
Confidence 3468999999999986 79999999987654 32223333333333221 111 1111 246655554
Q ss_pred cc---CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 238 GK---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 238 ~~---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
.. .-+ .++++||+|||++..+......|+...-+.
T Consensus 159 ~~~~~~~g-~~~~~~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 159 QLMLERLG-VAPEECVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred HHHHHHcC-CCHHHeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 21 112 467999999999999988888898776663
No 105
>KOG0001|consensus
Probab=97.77 E-value=0.00011 Score=54.08 Aligned_cols=67 Identities=30% Similarity=0.411 Sum_probs=61.9
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCc
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~ 80 (360)
..|+.+.+++.+..++..+|.+|+...|+|+..|.+. ++|+.+.|+.++.+++|..+.++.|..+..
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~---~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLI---FGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEE---ECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 6788899999999999999999999999999999998 899999999999999999999998876543
No 106
>KOG4248|consensus
Probab=97.76 E-value=2.9e-05 Score=83.61 Aligned_cols=70 Identities=24% Similarity=0.407 Sum_probs=64.6
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
..+|+||. ..++.++.|....||.+||..|.+.++|+.+.|+|| |.|++|.|+.++.+++| +|++|+|+-
T Consensus 2 e~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i---~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 2 EPNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLI---YQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred CcceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceee---ecceeeccchhhhhccC-CCeEEEeec
Confidence 35688886 677889999999999999999999999999999999 99999999999999999 999999874
No 107
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.76 E-value=5.7e-05 Score=68.92 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=69.3
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF 240 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~ 240 (360)
...-|.+.++|+.+...|.++|.|.+...++..++..+|+..+++..+. . ...| ..|+-..+|...
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~----s--------~~~g--~~KP~~~~f~~~ 163 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLLDYFDAVFI----S--------EDVG--VAKPDPEIFEYA 163 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCChhhhheEEE----e--------cccc--cCCCCcHHHHHH
Confidence 4667889999999988899999999999999999999997655443221 1 2334 478888887422
Q ss_pred ---CCCCCCCcEEEEeCCchhh-ccCCCCeeE
Q psy11202 241 ---PSLYNPTNTIMFDDIRRNF-LMNPRNGLR 268 (360)
Q Consensus 241 ---~~~~~~~ntIivDD~~~~~-~~~p~Ngi~ 268 (360)
.+ .+++++++|||+..+- .....-|+.
T Consensus 164 ~~~~g-~~p~~~l~VgD~~~~di~gA~~~G~~ 194 (229)
T COG1011 164 LEKLG-VPPEEALFVGDSLENDILGARALGMK 194 (229)
T ss_pred HHHcC-CCcceEEEECCChhhhhHHHHhcCcE
Confidence 22 4578999999999988 555555554
No 108
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.73 E-value=3e-05 Score=69.97 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=66.2
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh-CCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL-GVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L-~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~ 239 (360)
..+|++.++|+.+.+ +|.++|-|++....+...+... ++..++. .++.. ...|. .|+-..++..
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd----~v~~s--------~~~~~--~KP~p~~~~~ 149 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD----HIYLS--------QDLGM--RKPEARIYQH 149 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC----EEEEe--------cccCC--CCCCHHHHHH
Confidence 468999999999986 8999999999988776655432 2222221 11111 12222 4666666631
Q ss_pred ---CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 ---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 ---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ .++++|++|||++..+......|+...-+.
T Consensus 150 ~~~~~~-~~p~~~l~vgD~~~di~aA~~aG~~~i~~~ 185 (199)
T PRK09456 150 VLQAEG-FSAADAVFFDDNADNIEAANALGITSILVT 185 (199)
T ss_pred HHHHcC-CChhHeEEeCCCHHHHHHHHHcCCEEEEec
Confidence 113 567999999999999888888999876664
No 109
>PRK06769 hypothetical protein; Validated
Probab=97.72 E-value=4.6e-05 Score=67.73 Aligned_cols=123 Identities=12% Similarity=0.029 Sum_probs=76.4
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHH--------HHHHHHHHhCCCCCCCce
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMK--------WIEEKMKLLGVTVNPNYK 207 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~--------ya~~il~~L~~~~~~~~~ 207 (360)
+-+.|.||+||||.-.....+...+..-|++.++|++|.+ +|.++|-|+++.. .+...++.+|+.. .
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~----~ 78 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDD----I 78 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCE----E
Confidence 5578999999999744321222345668999999999987 8999999988641 2333354444321 1
Q ss_pred EEEEEecCCceeecccccCcceeeechhhcccC---CCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 208 IAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 208 i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
+.+... ...+....|+-..++... .+ .++++||+|+|++.........|+...-+.
T Consensus 79 ~~~~~~---------~~~~~~~~KP~p~~~~~~~~~l~-~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~ 137 (173)
T PRK06769 79 YLCPHK---------HGDGCECRKPSTGMLLQAAEKHG-LDLTQCAVIGDRWTDIVAAAKVNATTILVR 137 (173)
T ss_pred EECcCC---------CCCCCCCCCCCHHHHHHHHHHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 111000 000112246655454211 12 467999999999998888888887766553
No 110
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.71 E-value=0.00012 Score=67.24 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=61.2
Q ss_pred eeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEE--EEEecCCceeeccccc-C------cce
Q psy11202 160 YELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIA--FYVDYSAMISVHLPKY-G------VVE 229 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~--~vl~~~~~~~~~~~~~-g------~~~ 229 (360)
.+..+||+.+||+++.+ ++.++|-|++...|++++++.+ +... ..++ ..++.+. +....+.. . ...
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~--~i~~n~~~~~~~~-~~~~kp~p~~~~~~~~~~~ 147 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKE--QIYCNGSDFSGEY-ITITWPHPCDEHCQNHCGC 147 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcC--cEEEeEEEecCCe-eEEeccCCccccccccCCC
Confidence 35679999999999986 7999999999999999999997 5331 1111 1112111 11100000 0 000
Q ss_pred eeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCee
Q psy11202 230 VKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGL 267 (360)
Q Consensus 230 ~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi 267 (360)
.|. ..+. .+ + ..+.+||+|.|+..-..+....|+
T Consensus 148 ~K~-~~l~-~~-~-~~~~~~i~iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 148 CKP-SLIR-KL-S-DTNDFHIVIGDSITDLEAAKQADK 181 (219)
T ss_pred chH-HHHH-Hh-c-cCCCCEEEEeCCHHHHHHHHHCCc
Confidence 122 1121 11 1 345789999999988877767777
No 111
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.69 E-value=6.8e-05 Score=71.92 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHhhHHhhhhcc---ccCCCCCCCCceEEeecccceeecCCCc-----ccceeecCccHHHHHHHHhc-CCeEEEEcCCc
Q psy11202 117 AKIDKRIQDYQI---DILNEPRPGKKLLVLDIDYTLFDHRSAA-----EQGYELMRPYLHEFLTSAYK-NYDIAIWSATG 187 (360)
Q Consensus 117 ~kl~~ri~~y~i---~i~~~~~~~kk~LVLDLD~TLv~~~~~~-----~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~ 187 (360)
...-+|++.|.. +++.+...+++.+++|+||||....... ........|++.++|+.+.+ ++.++|.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 134 RSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred HHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 444466666643 4555555567899999999999754311 01234679999999999987 79999999999
Q ss_pred HHHHHHHHHHhCCCC-CCCceEEEEEecCCceeecccccCcceeeechhhcc----cCCCCC-CCCcEEEEeCCchhhcc
Q psy11202 188 MKWIEEKMKLLGVTV-NPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG----KFPSLY-NPTNTIMFDDIRRNFLM 261 (360)
Q Consensus 188 ~~ya~~il~~L~~~~-~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~----~~~~~~-~~~ntIivDD~~~~~~~ 261 (360)
..+++.+++.|+... ++. .+...+.+...- ...+. -|+-..++. .+ . . +++.+++|||++.-..+
T Consensus 214 ~~~~~~~l~~l~~~~~~f~----~i~~~~~~~~~~-~~~~~--~kp~p~~~~~~l~~~-~-~~~~~~~~~vgD~~~d~~~ 284 (300)
T PHA02530 214 GVCEEDTVEWLRQTDIWFD----DLIGRPPDMHFQ-REQGD--KRPDDVVKEEIFWEK-I-APKYDVLLAVDDRDQVVDM 284 (300)
T ss_pred hhhHHHHHHHHHHcCCchh----hhhCCcchhhhc-ccCCC--CCCcHHHHHHHHHHH-h-ccCceEEEEEcCcHHHHHH
Confidence 999999999997754 221 111111000000 00011 133332221 11 1 2 34889999999999999
Q ss_pred CCCCeeEeccc
Q psy11202 262 NPRNGLRIRPF 272 (360)
Q Consensus 262 ~p~Ngi~I~~f 272 (360)
...+|+.+...
T Consensus 285 a~~~Gi~~i~v 295 (300)
T PHA02530 285 WRRIGLECWQV 295 (300)
T ss_pred HHHhCCeEEEe
Confidence 99999886655
No 112
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.65 E-value=0.00013 Score=65.64 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=58.8
Q ss_pred cCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcc---
Q psy11202 163 MRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWG--- 238 (360)
Q Consensus 163 ~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~--- 238 (360)
.-|++.++|++|.+ +|.++|-|++... +..+++.+|+..++... +.. ...+ ..|+-+.++.
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i----~~s--------~~~~--~~KP~~~~~~~~~ 170 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFV----VTS--------YEVG--AEKPDPKIFQEAL 170 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceE----Eee--------cccC--CCCCCHHHHHHHH
Confidence 46899999999986 7999999998765 57888888775544321 111 1122 2465554442
Q ss_pred -cCCCCCCCCcEEEEeCCc-hhhccCCCCeeE
Q psy11202 239 -KFPSLYNPTNTIMFDDIR-RNFLMNPRNGLR 268 (360)
Q Consensus 239 -~~~~~~~~~ntIivDD~~-~~~~~~p~Ngi~ 268 (360)
.+ + .+++++|+|+|++ ..+......|+.
T Consensus 171 ~~~-~-~~~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 171 ERA-G-ISPEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHc-C-CChhHEEEECCCchHHHHHHHHcCCe
Confidence 22 3 5789999999997 455555555553
No 113
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.62 E-value=0.0001 Score=63.30 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=53.1
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc---
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW--- 237 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~--- 237 (360)
...||+.++|+.+.+ ++.++|.|++....+..+++.+ +..++. .+...+. .+ .|+-+..+
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~----~i~~~~~--------~~---~Kp~~~~~~~~ 127 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFD----LILGSDE--------FG---AKPEPEIFLAA 127 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCc----EEEecCC--------CC---CCcCHHHHHHH
Confidence 346999999999965 8999999999999999999986 333322 1211221 11 24433333
Q ss_pred -ccCCCCCCCCcEEEEeCCchhhc
Q psy11202 238 -GKFPSLYNPTNTIMFDDIRRNFL 260 (360)
Q Consensus 238 -~~~~~~~~~~ntIivDD~~~~~~ 260 (360)
+.+ + .++ +|++|.|++....
T Consensus 128 ~~~~-~-~~~-~~l~iGDs~~Di~ 148 (154)
T TIGR01549 128 LESL-G-LPP-EVLHVGDNLNDIE 148 (154)
T ss_pred HHHc-C-CCC-CEEEEeCCHHHHH
Confidence 222 3 456 8999999976544
No 114
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.59 E-value=0.00023 Score=58.83 Aligned_cols=66 Identities=26% Similarity=0.357 Sum_probs=49.9
Q ss_pred eEEEEEEE-CCe-EEEEEeCCCCCHHHHHHHHHHHh-------CCCccCeeeeccccCCCCCCCccccccccCCCCCE
Q psy11202 4 SLNLIIKW-NSK-EYKTSLSKSNTVLELKQEILKQT-------GVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFK 72 (360)
Q Consensus 4 ~i~i~vk~-~g~-~~~i~v~~~~Tv~~LK~~I~~~t-------gVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~ 72 (360)
.|+|++.. .|. .-++.+++++||++||+.|...- -..++..||| +.|++|.|+.+|+++++..|..
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI---~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLI---YAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE---ETTEEE-SSSBTGGGT--TTSE
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEE---eCCeecCCcCcHHHhCCCCCCC
Confidence 46676665 566 67889999999999999998642 2467789999 9999999999999999988774
No 115
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.59 E-value=0.00028 Score=63.50 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=53.1
Q ss_pred cHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc----ccC
Q psy11202 166 YLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW----GKF 240 (360)
Q Consensus 166 ~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~----~~~ 240 (360)
+..++|+.+.+ ++.++|-|++...+++.+++.+|+..++... +..+. . .. |+-+.++ +.+
T Consensus 110 ~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~----~~~~~--------~--~~-KP~p~~~~~~~~~~ 174 (197)
T TIGR01548 110 TPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQ----IWMED--------C--PP-KPNPEPLILAAKAL 174 (197)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEE----EeecC--------C--CC-CcCHHHHHHHHHHh
Confidence 34899999986 7999999999999999999999886554322 22111 0 11 4433332 122
Q ss_pred CCCCCCCcEEEEeCCchhhc
Q psy11202 241 PSLYNPTNTIMFDDIRRNFL 260 (360)
Q Consensus 241 ~~~~~~~ntIivDD~~~~~~ 260 (360)
+ .++++||+|+|++....
T Consensus 175 -~-~~~~~~i~vGD~~~Di~ 192 (197)
T TIGR01548 175 -G-VEACHAAMVGDTVDDII 192 (197)
T ss_pred -C-cCcccEEEEeCCHHHHH
Confidence 2 46789999999986543
No 116
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.00022 Score=80.00 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred cCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC-CCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 163 MRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT-VNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 163 ~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~-~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
.-||+.+||++|.+ +|.++|-|++...+++.+++.+++. .++.. ++..+. .+ ..|+-+.++..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~----iv~~~~--------~~--~~KP~Pe~~~~a 227 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA----IVSADA--------FE--NLKPAPDIFLAA 227 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE----EEECcc--------cc--cCCCCHHHHHHH
Confidence 37999999999986 8999999999999999999999874 33332 222211 11 24665555521
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ .+++++|+|+|++..+......|++..-+.
T Consensus 228 ~~~lg-v~p~e~v~IgDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 228 AKILG-VPTSECVVIEDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred HHHcC-cCcccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 112 467999999999999888888887765553
No 117
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.48 E-value=0.00016 Score=65.18 Aligned_cols=98 Identities=19% Similarity=0.078 Sum_probs=59.4
Q ss_pred ecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceee--echhhccc
Q psy11202 162 LMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVK--PLGVIWGK 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~K--dL~~l~~~ 239 (360)
..+||+.+||+.+.+.+.++|-|++...+++.+++.+|+....... +.++.+..+.- .. ......| -+.. |..
T Consensus 68 ~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~--~~~~~~~~i~~-~~-~~~p~~k~~~l~~-~~~ 142 (205)
T PRK13582 68 DPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPTLFCHS--LEVDEDGMITG-YD-LRQPDGKRQAVKA-LKS 142 (205)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCchhhcce--EEECCCCeEEC-cc-ccccchHHHHHHH-HHH
Confidence 3479999999999987999999999999999999999875332211 11121111110 00 0000111 0111 111
Q ss_pred CCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 240 FPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 240 ~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
.+.++++|-|+..-+.+...+|+.|
T Consensus 143 -----~~~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 143 -----LGYRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred -----hCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 2368999999998765555555544
No 118
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.42 E-value=0.00033 Score=72.67 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=74.2
Q ss_pred CCCCCCceEEeecccceeecCCC---ccc--ceeecCccHHHHHHHHhc-CCeEEEEcCCcH------------HHHHHH
Q psy11202 133 EPRPGKKLLVLDIDYTLFDHRSA---AEQ--GYELMRPYLHEFLTSAYK-NYDIAIWSATGM------------KWIEEK 194 (360)
Q Consensus 133 ~~~~~kk~LVLDLD~TLv~~~~~---~~~--~~~~~RP~l~eFL~~l~~-~yeivIwTas~~------------~ya~~i 194 (360)
...+..|++.||+||||+...+. ... -+.+.-|++.+.|..|.+ +|.|+|+|+.+. .+++.+
T Consensus 163 ~~~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~i 242 (526)
T TIGR01663 163 GVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAI 242 (526)
T ss_pred CcCccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHH
Confidence 44567799999999999976431 111 233457999999999987 899999999777 568899
Q ss_pred HHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc----CC---CCCCCCcEEEEeCCc
Q psy11202 195 MKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK----FP---SLYNPTNTIMFDDIR 256 (360)
Q Consensus 195 l~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~----~~---~~~~~~ntIivDD~~ 256 (360)
++.+|+. +.+++..+. ..+-|+-.-.|.. +. + .+++++++|-|..
T Consensus 243 L~~lgip------fdviia~~~----------~~~RKP~pGm~~~a~~~~~~~~~-Id~~~S~~VGDaa 294 (526)
T TIGR01663 243 VAKLGVP------FQVFIAIGA----------GFYRKPLTGMWDHLKEEANDGTE-IQEDDCFFVGDAA 294 (526)
T ss_pred HHHcCCc------eEEEEeCCC----------CCCCCCCHHHHHHHHHhcCcccC-CCHHHeEEeCCcc
Confidence 9998763 223222221 1245666666532 21 2 4678999999986
No 119
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.39 E-value=0.00048 Score=65.36 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVN 203 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~ 203 (360)
.+-++|+|||.|||..... -...=|.+-+.|.++.+ ++-+++||.++.+++..-|+++++...
T Consensus 121 ~phVIVfDlD~TLItd~~~----v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~ 184 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGD----VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGY 184 (297)
T ss_pred CCcEEEEECCCcccccCCc----cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccc
Confidence 4569999999999965321 12335889999999998 678999999999999999999987643
No 120
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.37 E-value=0.0004 Score=65.02 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=73.9
Q ss_pred eEEeecccceeecCCC---c-----c---------c--------ceeecCcc--HHHHHHHHhc-CCeEEEEcCC----c
Q psy11202 140 LLVLDIDYTLFDHRSA---A-----E---------Q--------GYELMRPY--LHEFLTSAYK-NYDIAIWSAT----G 187 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~---~-----~---------~--------~~~~~RP~--l~eFL~~l~~-~yeivIwTas----~ 187 (360)
.++|||||||+++... . . . ......|+ +.+||+++.+ ++.++|-|+. .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 8999999999998651 0 0 0 11122555 9999999987 8999999998 6
Q ss_pred HHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCee
Q psy11202 188 MKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGL 267 (360)
Q Consensus 188 ~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi 267 (360)
..+++.+++.+|+...+ ..++..+. .+. .|+-...|..- + .-+|+|-|+..-+.....+|+
T Consensus 145 ~~~a~~ll~~lGi~~~f----~~i~~~d~--------~~~--~Kp~~~~~l~~---~--~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 145 DTVSKTLAKNFHIPAMN----PVIFAGDK--------PGQ--YQYTKTQWIQD---K--NIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred HHHHHHHHHHhCCchhe----eEEECCCC--------CCC--CCCCHHHHHHh---C--CCeEEEeCCHHHHHHHHHCCC
Confidence 67999999999885422 23333221 000 12211112111 1 338999999998887777887
Q ss_pred Eeccc
Q psy11202 268 RIRPF 272 (360)
Q Consensus 268 ~I~~f 272 (360)
.....
T Consensus 206 ~~I~V 210 (237)
T TIGR01672 206 RGIRI 210 (237)
T ss_pred CEEEE
Confidence 74444
No 121
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.34 E-value=0.0003 Score=64.72 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=65.7
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeech----hh
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLG----VI 236 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~----~l 236 (360)
..-|++.+.|..+.. +|.++|-|+.+...++.+++.+|+..++...+. .+. . ..-|+-+ .+
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g----~~~-------~---~~~KP~P~~l~~~ 154 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVG----GDD-------V---PPPKPDPEPLLLL 154 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEc----CCC-------C---CCCCcCHHHHHHH
Confidence 467999999999987 899999999999999999999998776543221 111 0 1123222 11
Q ss_pred cccCCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 237 WGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 237 ~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
-..+ + .+++++|+|=|+..-..+...+|+...
T Consensus 155 ~~~~-~-~~~~~~l~VGDs~~Di~aA~~Ag~~~v 186 (220)
T COG0546 155 LEKL-G-LDPEEALMVGDSLNDILAAKAAGVPAV 186 (220)
T ss_pred HHHh-C-CChhheEEECCCHHHHHHHHHcCCCEE
Confidence 1222 1 234699999999999998888886533
No 122
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.32 E-value=0.00037 Score=61.73 Aligned_cols=107 Identities=22% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCc-HHHHHHHHHHhCCCCCCCceEEEEEe
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATG-MKWIEEKMKLLGVTVNPNYKIAFYVD 213 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~-~~ya~~il~~L~~~~~~~~~i~~vl~ 213 (360)
.+-+.+|+|+||||..... ...-|++.++|++|.+ ++.++|.|+++ ...+..+++.+++.. + .
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-------~--~ 87 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-------L--P 87 (170)
T ss_pred CCCCEEEEecCCccccCCC------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-------E--c
Confidence 4778999999999996532 2346999999999987 69999999998 677777777665321 0 0
Q ss_pred cCCceeecccccCcceeeechhhccc---CCCCCCCCcEEEEeCCc-hhhccCCCCeeEeccc
Q psy11202 214 YSAMISVHLPKYGVVEVKPLGVIWGK---FPSLYNPTNTIMFDDIR-RNFLMNPRNGLRIRPF 272 (360)
Q Consensus 214 ~~~~~~~~~~~~g~~~~KdL~~l~~~---~~~~~~~~ntIivDD~~-~~~~~~p~Ngi~I~~f 272 (360)
. ..|+-..++.. ..+ .+++++++|+|+. ........+|+...-+
T Consensus 88 -~-------------~~KP~p~~~~~~l~~~~-~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 88 -H-------------AVKPPGCAFRRAHPEMG-LTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred -C-------------CCCCChHHHHHHHHHcC-CCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 0 12333333311 012 4568999999998 4676666777765444
No 123
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.29 E-value=0.00023 Score=69.58 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=82.9
Q ss_pred CCCCCCCCceEEeecccceeecCC----------------------C-----------------c--------ccceeec
Q psy11202 131 LNEPRPGKKLLVLDIDYTLFDHRS----------------------A-----------------A--------EQGYELM 163 (360)
Q Consensus 131 ~~~~~~~kk~LVLDLD~TLv~~~~----------------------~-----------------~--------~~~~~~~ 163 (360)
-++.+..++++|+||||||+.... . . .......
T Consensus 103 ~~~~~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l 182 (322)
T PRK11133 103 KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPL 182 (322)
T ss_pred CcccccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 345666889999999999995321 0 0 0113457
Q ss_pred CccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeec-ccccCcceeee--chhhccc
Q psy11202 164 RPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVH-LPKYGVVEVKP--LGVIWGK 239 (360)
Q Consensus 164 RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~-~~~~g~~~~Kd--L~~l~~~ 239 (360)
+||+.+||+.|.+ ++.++|.|++...+++.+++.+++.....-.+.+ . +..++.. ........-|. |..+-+.
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei--~-dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEI--M-DGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEE--E-CCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 8999999999987 8999999999999999999998763211111111 1 1111100 00000000121 1111111
Q ss_pred CCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 240 FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 240 ~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
.+ .++++||+|-|+..-..+-...|+.|.
T Consensus 260 -lg-i~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 260 -YE-IPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred -cC-CChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 12 467899999999988887777777664
No 124
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.28 E-value=0.00049 Score=53.25 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred eEEEEEEECC-eEEEEEeCCCCCHHHHHHHHHHHhCCCccCee---eeccc-cCCCCCCCccccccccCCCCCEEEE
Q psy11202 4 SLNLIIKWNS-KEYKTSLSKSNTVLELKQEILKQTGVNPERQK---LLNLK-HAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~~g-~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQK---Llgl~-~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
.++|+|.++. +.+++.++.+.||++|...|.+..+.+..... -.-+. .+|..+.++.+|+++||.+|+.+++
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4789999974 99999999999999999999999886444322 11122 5788899999999999999999986
No 125
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.22 E-value=0.0011 Score=65.69 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCceEEeecccceeecCCCc----ccceeecCccHHHHHHHHhc-CCeEEEEcCC---------------cHHHHHHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAA----EQGYELMRPYLHEFLTSAYK-NYDIAIWSAT---------------GMKWIEEKMK 196 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~----~~~~~~~RP~l~eFL~~l~~-~yeivIwTas---------------~~~ya~~il~ 196 (360)
++++|+||=||||+...... ........|++.+||.+|.+ +|.++|-|+. ...++..+++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 47899999999999875422 22357889999999999987 8999999995 3556777777
Q ss_pred HhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc---CCCCCCCCcEEEEeCCchhhccCCCCeeEecc
Q psy11202 197 LLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK---FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRP 271 (360)
Q Consensus 197 ~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~---~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~ 271 (360)
.+++. .. .+.+ +... ..... ...|+-+.++.. ..+ .+++++++|-|+..-+.....+|++..-
T Consensus 81 ~~gl~--fd-~i~i--~~~~----~sd~~--~~rKP~p~~l~~a~~~l~-v~~~~svmIGDs~sDi~aAk~aGi~~I~ 146 (354)
T PRK05446 81 SQGIK--FD-EVLI--CPHF----PEDNC--SCRKPKTGLVEEYLAEGA-IDLANSYVIGDRETDVQLAENMGIKGIR 146 (354)
T ss_pred HcCCc--ee-eEEE--eCCc----CcccC--CCCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCCCeEEE
Confidence 77663 11 1111 1000 00111 124665544421 123 6789999999998777777777876443
No 126
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.21 E-value=0.00031 Score=65.41 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=56.3
Q ss_pred ccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc---CC
Q psy11202 165 PYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK---FP 241 (360)
Q Consensus 165 P~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~---~~ 241 (360)
|++.++|+.|.+.|.++|-|+++.. ++.+|+..++. +++.. ...+ ..|+-..++.. ..
T Consensus 116 ~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~~~fd----~i~~~--------~~~~--~~KP~p~~~~~a~~~~ 176 (238)
T PRK10748 116 QATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLGDYFE----FVLRA--------GPHG--RSKPFSDMYHLAAEKL 176 (238)
T ss_pred ccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcHHhhc----eeEec--------ccCC--cCCCcHHHHHHHHHHc
Confidence 7899999999988999999998765 35566654433 22211 1222 24666655521 11
Q ss_pred CCCCCCcEEEEeCCc-hhhccCCCCeeEec
Q psy11202 242 SLYNPTNTIMFDDIR-RNFLMNPRNGLRIR 270 (360)
Q Consensus 242 ~~~~~~ntIivDD~~-~~~~~~p~Ngi~I~ 270 (360)
+ .+++++|+|-|++ ..+.....+|+...
T Consensus 177 ~-~~~~~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 177 N-VPIGEILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred C-CChhHEEEEcCCcHHHHHHHHHCCCeEE
Confidence 3 5679999999984 67766777887654
No 127
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.15 E-value=0.00012 Score=64.29 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred cCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccC--
Q psy11202 163 MRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKF-- 240 (360)
Q Consensus 163 ~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~-- 240 (360)
..|++.++|+ .++|.|+++..++..+++.+++..+... ++.. ...+. .|+-..+|...
T Consensus 91 ~~~g~~~~L~------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~----v~~~--------~~~~~--~KP~p~~f~~~~~ 150 (175)
T TIGR01493 91 PWPDSAAALA------RVAILSNASHWAFDQFAQQAGLPWYFDR----AFSV--------DTVRA--YKPDPVVYELVFD 150 (175)
T ss_pred CCCchHHHHH------HHhhhhCCCHHHHHHHHHHCCCHHHHhh----hccH--------hhcCC--CCCCHHHHHHHHH
Confidence 5777777777 3789999999999999999987554332 1111 12222 47666665321
Q ss_pred -CCCCCCCcEEEEeCCchhhc
Q psy11202 241 -PSLYNPTNTIMFDDIRRNFL 260 (360)
Q Consensus 241 -~~~~~~~ntIivDD~~~~~~ 260 (360)
.+ .++++||+|+|++....
T Consensus 151 ~~~-~~p~~~l~vgD~~~Di~ 170 (175)
T TIGR01493 151 TVG-LPPDRVLMVAAHQWDLI 170 (175)
T ss_pred HHC-CCHHHeEeEecChhhHH
Confidence 12 56799999999976543
No 128
>PTZ00445 p36-lilke protein; Provisional
Probab=97.06 E-value=0.00078 Score=61.65 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=81.9
Q ss_pred CCceEEeecccceee--cCC---Cc---ccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHH---------------HH
Q psy11202 137 GKKLLVLDIDYTLFD--HRS---AA---EQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKW---------------IE 192 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~--~~~---~~---~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~y---------------a~ 192 (360)
|-+++++|||.||+. +.. +. ....-..||.+..++..|.+ ++.|+|-|=+.... ++
T Consensus 42 GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~ 121 (219)
T PTZ00445 42 GIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVE 121 (219)
T ss_pred CCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHH
Confidence 889999999999996 211 10 11234579999999999987 89998888777644 55
Q ss_pred HHHHHhCCCCCCCceEEE----EEecCCceeecccccCcceeeechhh--c--ccC---CCCCCCCcEEEEeCCchhhcc
Q psy11202 193 EKMKLLGVTVNPNYKIAF----YVDYSAMISVHLPKYGVVEVKPLGVI--W--GKF---PSLYNPTNTIMFDDIRRNFLM 261 (360)
Q Consensus 193 ~il~~L~~~~~~~~~i~~----vl~~~~~~~~~~~~~g~~~~KdL~~l--~--~~~---~~~~~~~ntIivDD~~~~~~~ 261 (360)
..|++=+...... ++.+ +|+...++. .....|+-..+ + ..+ .+ ..++.||+|||.+.|+..
T Consensus 122 ~~lk~s~~~~~i~-~~~~yyp~~w~~p~~y~------~~gl~KPdp~iK~yHle~ll~~~g-l~peE~LFIDD~~~NVea 193 (219)
T PTZ00445 122 AALKKSKCDFKIK-KVYAYYPKFWQEPSDYR------PLGLDAPMPLDKSYHLKQVCSDFN-VNPDEILFIDDDMNNCKN 193 (219)
T ss_pred HHHHhcCccceee-eeeeeCCcccCChhhhh------hhcccCCCccchHHHHHHHHHHcC-CCHHHeEeecCCHHHHHH
Confidence 5555432221111 1111 133221110 11235666555 4 211 12 467999999999999999
Q ss_pred CCCCeeEeccccc
Q psy11202 262 NPRNGLRIRPFRE 274 (360)
Q Consensus 262 ~p~Ngi~I~~f~~ 274 (360)
.-.-|+...-|.+
T Consensus 194 A~~lGi~ai~f~~ 206 (219)
T PTZ00445 194 ALKEGYIALHVTG 206 (219)
T ss_pred HHHCCCEEEEcCC
Confidence 9888988777764
No 129
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00091 Score=61.56 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=61.7
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcc-----eeeech
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVV-----EVKPLG 234 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~-----~~KdL~ 234 (360)
...+|+..+.++.+.. +++++|-|++-..+++++.+.||+.....-. +..+.+ +++-. -.|.. -.+-|.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~--l~~~dG-~ltG~--v~g~~~~~~~K~~~l~ 150 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANE--LEIDDG-KLTGR--VVGPICDGEGKAKALR 150 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeE--EEEeCC-EEece--eeeeecCcchHHHHHH
Confidence 7889999999999987 8999999999999999999999875432111 111111 22210 01111 112232
Q ss_pred hhcccCCCCCCCCcEEEEeCCchhhccCCCCe
Q psy11202 235 VIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNG 266 (360)
Q Consensus 235 ~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ng 266 (360)
.+-+.+ + .++++++.+=|+..-..|--.-|
T Consensus 151 ~~~~~~-g-~~~~~~~a~gDs~nDlpml~~ag 180 (212)
T COG0560 151 ELAAEL-G-IPLEETVAYGDSANDLPMLEAAG 180 (212)
T ss_pred HHHHHc-C-CCHHHeEEEcCchhhHHHHHhCC
Confidence 332222 2 45678999988876665543333
No 130
>PRK08238 hypothetical protein; Validated
Probab=96.88 E-value=0.002 Score=66.29 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCceEEeecccceeecCCC---------------------------------c-----ccceeecCccHHHHHHHHhc-C
Q psy11202 137 GKKLLVLDIDYTLFDHRSA---------------------------------A-----EQGYELMRPYLHEFLTSAYK-N 177 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~---------------------------------~-----~~~~~~~RP~l~eFL~~l~~-~ 177 (360)
...-||+||||||+++..- + .......+|++.++|+.+.+ +
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 4457999999999987640 0 01233468999999999976 8
Q ss_pred CeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 178 YDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 178 yeivIwTas~~~ya~~il~~L~~ 200 (360)
+.++|-|++...+++.+++.+|+
T Consensus 89 ~~v~LaTas~~~~a~~i~~~lGl 111 (479)
T PRK08238 89 RKLVLATASDERLAQAVAAHLGL 111 (479)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCC
Confidence 99999999999999999999976
No 131
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.87 E-value=0.0012 Score=60.29 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=38.1
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
+..+|+..+||+.+.+.+.++|-|++...+++++++.+|+.
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc
Confidence 46799999999999988899999999999999999999875
No 132
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.85 E-value=0.0024 Score=55.55 Aligned_cols=108 Identities=24% Similarity=0.289 Sum_probs=71.2
Q ss_pred ceEEeecccceeecCC---C--cccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEE
Q psy11202 139 KLLVLDIDYTLFDHRS---A--AEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYV 212 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~---~--~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl 212 (360)
++++||+||||++... . .+...+..+|+. -+++|.+ ++.++|-|+.....+..+++.+|+... +..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~----~~~-- 73 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHL----YQG-- 73 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEE----Eec--
Confidence 6899999999997421 1 112344566765 6888876 899999999999999999999976422 111
Q ss_pred ecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 213 DYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
. .++ ...++.+ -..+ + .++++|++|-|+..-..+-...|+.+
T Consensus 74 -~-------~~k--~~~~~~~---~~~~-~-~~~~~~~~vGDs~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 74 -Q-------SNK--LIAFSDI---LEKL-A-LAPENVAYIGDDLIDWPVMEKVGLSV 115 (154)
T ss_pred -c-------cch--HHHHHHH---HHHc-C-CCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 0 000 1111111 1111 1 45689999999998888777777753
No 133
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.80 E-value=0.0023 Score=55.89 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=37.2
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
+..+|++.++|+.+.+ ++.++|-|++...|++++++.+|+.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 4568999999999976 7999999999999999999999875
No 134
>KOG4495|consensus
Probab=96.79 E-value=0.0022 Score=50.86 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=53.1
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCC
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNAT 68 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~ 68 (360)
+=|.|+..+.+|-++..++.||.+||.+++..+.-|+..|+|.-+ ---.+|.|..+|+++|..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~km-d~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKM-DTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeec-CHHHHhhccchhhhcccc
Confidence 567889888889999999999999999999999999999999711 112578888999999764
No 135
>KOG3493|consensus
Probab=96.69 E-value=0.0011 Score=48.84 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=54.2
Q ss_pred EEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEE
Q psy11202 6 NLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 6 ~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
.+.+. .-|++..|.-++++||+|||..|+.+||-.|++--|- -.+.+.+|.-+|+.+.+.+|..+-|
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~---k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLK---KWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHH---hhhhhhhcccceeeEEeccCccEEE
Confidence 34444 3478888999999999999999999999999876654 3456788999999999999976643
No 136
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.66 E-value=0.0083 Score=45.58 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeecccc---CC--CCCCCccccccccCCCCCEEEEEcc
Q psy11202 5 LNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKH---AG--KIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 5 i~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~---kg--k~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
|.|+|+ |+.....+.|+|.++|..+|++|...-|++- .|+|- | +| .++.+..+|+.+||=....|.||-|
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLs---fQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLS---FQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEE---eecCCcccccccccccHhhhcceeccEEEEEec
Confidence 468888 7888899999999999999999999999877 78886 4 22 4678889999999998888988865
Q ss_pred C
Q psy11202 79 L 79 (360)
Q Consensus 79 ~ 79 (360)
-
T Consensus 77 ~ 77 (80)
T cd01811 77 F 77 (80)
T ss_pred C
Confidence 3
No 137
>KOG0006|consensus
Probab=96.62 E-value=0.0022 Score=61.28 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccC--CCCCEEEEE
Q psy11202 15 EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNA--TDGFKLMVM 76 (360)
Q Consensus 15 ~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l--~~g~~i~l~ 76 (360)
.++|+|+.+.+|.+||+-++..+|||++..++| |.||.|.++.++..+.| ++-..||++
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~vi---FaGKeLs~~ttv~~cDL~qqs~~hi~~l 75 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVI---FAGKELSNDTTVQNCDLSQQSATHIMLL 75 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEE---EeccccccCceeecccccccchhhhhcc
Confidence 477889999999999999999999999999999 99999999999995544 444455544
No 138
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.58 E-value=0.0043 Score=59.11 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCCCceEEeecccceeecCCC---------cc----------cceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHH--
Q psy11202 135 RPGKKLLVLDIDYTLFDHRSA---------AE----------QGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIE-- 192 (360)
Q Consensus 135 ~~~kk~LVLDLD~TLv~~~~~---------~~----------~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~-- 192 (360)
..+++.+|||+|||+++.... .+ ......-||+.+||+++.+ +..++|-|+.+..+.+
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 356789999999999976521 11 1234467999999999976 8999999998866655
Q ss_pred -HHHHHhCCC
Q psy11202 193 -EKMKLLGVT 201 (360)
Q Consensus 193 -~il~~L~~~ 201 (360)
..|+.+|+.
T Consensus 152 ~~~Lkk~Gi~ 161 (266)
T TIGR01533 152 LKNLKRFGFP 161 (266)
T ss_pred HHHHHHcCcC
Confidence 555555654
No 139
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.48 E-value=0.0063 Score=51.47 Aligned_cols=52 Identities=25% Similarity=0.158 Sum_probs=40.4
Q ss_pred ceEEeecccceeecCCCcccc-eeecCccHHHHHHHHh-cCCeEEEEcCCcHHHHH
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQG-YELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIE 192 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~-~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya~ 192 (360)
|++++||||||+.... ..+ .....|.+.+.|+.+. +++.|+++|+-...+..
T Consensus 2 K~i~~DiDGTL~~~~~--~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN--GDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred CEEEEeCCCCcccCCC--CcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 6899999999986421 112 1346788889999985 59999999999988876
No 140
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.47 E-value=0.0079 Score=56.51 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=51.6
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHh-cCCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
..+++++||||||+.+... ..|...+.|+++. +++.++|-|..+...+..+++.|++..
T Consensus 2 ~~kli~~DlDGTLl~~~~~-------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 4689999999999987542 6899999999885 499999999999999999999997754
No 141
>PRK11590 hypothetical protein; Provisional
Probab=96.37 E-value=0.0053 Score=56.07 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=34.4
Q ss_pred ecCccHHHHH-HHHhc-CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 162 LMRPYLHEFL-TSAYK-NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 162 ~~RP~l~eFL-~~l~~-~yeivIwTas~~~ya~~il~~L~~ 200 (360)
..+|++.+.| +.+.+ ++.++|-|++...|+++++..++.
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccc
Confidence 3479999999 56774 999999999999999999999875
No 142
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.36 E-value=0.0082 Score=56.94 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=48.3
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.|++++||||||+++.. ...|...+.|+.+.+ ++.++|-|.-+...+..+++.+++.
T Consensus 4 ~kli~~DlDGTLl~~~~-------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCC-------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 67999999999997532 134678899999987 7999999999999999999999764
No 143
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.24 E-value=0.014 Score=54.93 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=47.1
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
.|++++||||||++... ..-|...+.|+.+.+ ++.++|-|.-+...+..+++.+++..
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred eEEEEEecCCcCcCCCC-------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 57999999999997532 134556678888876 79999999999999999999997653
No 144
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.24 E-value=0.0087 Score=44.69 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=46.5
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
.|.++++.+.|.+.++.|+.++=++..+..|+.++.=.|. ++++.++-+.++.-.||.+|+++.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~---h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK---HNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEE---ETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEE---ECCEEeccccceeecCCCCCCEEeC
Confidence 3667899999999999999999999999999999966666 8999998888999999999999865
No 145
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.19 E-value=0.0073 Score=53.02 Aligned_cols=103 Identities=24% Similarity=0.314 Sum_probs=60.4
Q ss_pred ceEEeecccceeecCCCc-----ccceeecCccHHHHHHHHhc-CCeEEEEcCCc---H-----------HHHHHHHHHh
Q psy11202 139 KLLVLDIDYTLFDHRSAA-----EQGYELMRPYLHEFLTSAYK-NYDIAIWSATG---M-----------KWIEEKMKLL 198 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~-----~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~---~-----------~ya~~il~~L 198 (360)
|++.|||||||+...+.. ..-+.+.-|++.+-|.++.+ +|.|+|+|... . ..++.+++.|
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 578999999999876521 12356778899999999987 99999999751 1 3444555555
Q ss_pred CCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCC------CCCCcEEEEeCCch
Q psy11202 199 GVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSL------YNPTNTIMFDDIRR 257 (360)
Q Consensus 199 ~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~------~~~~ntIivDD~~~ 257 (360)
++. +.++... ..+ .+-|+-.-.|..+... .+.++.++|=|.+-
T Consensus 81 ~ip------~~~~~a~---------~~d-~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 81 GIP------IQVYAAP---------HKD-PCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp TS-------EEEEECG---------CSS-TTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred CCc------eEEEecC---------CCC-CCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 432 2222111 111 3456666666332211 35688999988643
No 146
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.16 E-value=0.029 Score=42.62 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=56.7
Q ss_pred CCceEEEEE--E-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCC--c---cCeeeeccccCCCCCCCccccccccCCCCCE
Q psy11202 1 MGDSLNLII--K-WNSKEYKTSLSKSNTVLELKQEILKQTGVN--P---ERQKLLNLKHAGKIPSDDTKLADTNATDGFK 72 (360)
Q Consensus 1 m~~~i~i~v--k-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp--~---~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~ 72 (360)
|-+-|+|+| + |+|.+|++.++.--++..|-..+.+...|. + ...|.+ -|++++.++..|.+++|.+|+.
T Consensus 1 ~nm~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~---nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 1 MNMHIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVM---NKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred CCceEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEe---ccceEecCCceEEeccccCCCE
Confidence 333344444 4 699999999999999999999888876642 2 345677 6899999999999999999998
Q ss_pred EEE
Q psy11202 73 LMV 75 (360)
Q Consensus 73 i~l 75 (360)
+-+
T Consensus 78 Lei 80 (81)
T COG5417 78 LEI 80 (81)
T ss_pred EEe
Confidence 754
No 147
>KOG3206|consensus
Probab=96.11 E-value=0.017 Score=52.36 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=61.4
Q ss_pred EEEEEEECCeE--EEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCC------CCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWNSKE--YKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAG------KIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~g~~--~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kg------k~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+++.|.++-.. .+..++.+.||.+||.+|+-+||.+++.++|- + |+| .+-+++..|..++..+|-.|+++
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~-l-~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELE-L-YDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEE-E-EcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 56777776666 44568999999999999999999999999986 2 333 34455678999999999999999
Q ss_pred ccCcchh
Q psy11202 77 GSLEQSI 83 (360)
Q Consensus 77 gs~~~~i 83 (360)
-+....+
T Consensus 80 D~~~~~~ 86 (234)
T KOG3206|consen 80 DSNAQSI 86 (234)
T ss_pred ecCcccc
Confidence 7766544
No 148
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=95.95 E-value=0.0088 Score=53.59 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=36.6
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
..+|++.++|+.+.+ ++.++|-|++...+++++++.+|+.
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 469999999999976 7999999999999999999999874
No 149
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.95 E-value=0.013 Score=47.50 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=38.6
Q ss_pred EEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHH---HHhCCCC
Q psy11202 141 LVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKM---KLLGVTV 202 (360)
Q Consensus 141 LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il---~~L~~~~ 202 (360)
+++|+||||++... .=||..+||+++.+ +..+++.|.++..-.+.++ ..+|+..
T Consensus 1 ~l~D~dGvl~~g~~--------~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE--------PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp EEEESTTTSEETTE--------E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred CEEeCccEeEeCCC--------cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 58999999997422 35999999999998 7999999999854444333 5556653
No 150
>KOG2914|consensus
Probab=95.87 E-value=0.011 Score=54.86 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhC-CCCCCCceEEEEEecCCceeecccccCcceeeechhh
Q psy11202 159 GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLG-VTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVI 236 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~-~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l 236 (360)
.....-||+..++..|.. .--+++||+++..+++.+++.++ +...+.-.+ + .| .+.... -|+-..+
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v-~-~d--------~~~v~~--gKP~Pdi 156 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVV-L-GD--------DPEVKN--GKPDPDI 156 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCe-e-cC--------CccccC--CCCCchH
Confidence 356678999999999987 79999999999999999999884 322221111 1 11 111111 2555555
Q ss_pred c---ccCCCCCC-CCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 237 W---GKFPSLYN-PTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 237 ~---~~~~~~~~-~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
| +++-+ .+ +++|++++|++..+.+...-|.++.-..
T Consensus 157 ~l~A~~~l~-~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~ 196 (222)
T KOG2914|consen 157 YLKAAKRLG-VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVA 196 (222)
T ss_pred HHHHHHhcC-CCCccceEEECCCHHHHHHHHhcCCeEEEec
Confidence 5 11212 23 4999999999999988877777766653
No 151
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.87 E-value=0.027 Score=51.38 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=44.4
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++++||||||++... . .-|-..+.|..+.+ +..++|-|.-+...+..+++.+++.
T Consensus 1 ~i~~DlDGTLL~~~~-----~--~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSHS-----Y--DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCCC-----C--CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 478999999997532 1 12226788888876 7999999999999999999999763
No 152
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.82 E-value=0.021 Score=50.01 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=44.0
Q ss_pred eEEeecccceeecCCCc----ccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHH---HHHHH
Q psy11202 140 LLVLDIDYTLFDHRSAA----EQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIE---EKMKL 197 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~----~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~---~il~~ 197 (360)
++++|+||||+.+.... ....-+..|+..++++.+.+ +|.+++.|+..+..+. ..+..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 47899999999775211 01113568999999999987 8999999999988875 55555
No 153
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=95.80 E-value=0.036 Score=51.91 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=68.7
Q ss_pred CceEEeecccceeecCCCc-------------c------------cceeecCcc--HHHHHHHHh-cCCeEEEEcCC---
Q psy11202 138 KKLLVLDIDYTLFDHRSAA-------------E------------QGYELMRPY--LHEFLTSAY-KNYDIAIWSAT--- 186 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~-------------~------------~~~~~~RP~--l~eFL~~l~-~~yeivIwTas--- 186 (360)
+..++||+|||+++++... + ......+|+ +.+||+.+. ++++|++-|+.
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 3489999999999854310 0 001234555 999999995 49999999985
Q ss_pred -cHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCC
Q psy11202 187 -GMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRN 265 (360)
Q Consensus 187 -~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~N 265 (360)
...+++.+++.+|+.....+. .++..+. .++ .-|. ..+ .++ .-+|+|-|+..-+......
T Consensus 143 k~~~t~~~Llk~~gip~~~~f~--vil~gd~-------~~K--~~K~-~~l-~~~------~i~I~IGDs~~Di~aA~~A 203 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMNP--VIFAGDK-------PGQ--YTKT-QWL-KKK------NIRIFYGDSDNDITAAREA 203 (237)
T ss_pred ccHHHHHHHHHHcCCCccccee--EEEcCCC-------CCC--CCHH-HHH-Hhc------CCeEEEcCCHHHHHHHHHc
Confidence 466888888888873222111 1222111 011 0111 111 111 2389999998888777777
Q ss_pred eeEe
Q psy11202 266 GLRI 269 (360)
Q Consensus 266 gi~I 269 (360)
|+..
T Consensus 204 Gi~~ 207 (237)
T PRK11009 204 GARG 207 (237)
T ss_pred CCcE
Confidence 7653
No 154
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.75 E-value=0.024 Score=52.76 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=48.3
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHH--HHHHHhCCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIE--EKMKLLGVTV 202 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~--~il~~L~~~~ 202 (360)
...++++|+||||++... .-||..++|+++.+ ++.++|-|+++...++ ..++.+|+..
T Consensus 7 ~~~~~~~D~dG~l~~~~~--------~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH--------TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred cCCEEEEecccccccCCc--------cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 456899999999996532 36999999999986 8999999999888776 7888888754
No 155
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.68 E-value=0.026 Score=51.32 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=46.5
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
+++++||||||++... ..-|...+-|..+.+ ++.++|-|..+...+..+.+.|++.
T Consensus 2 k~v~~DlDGTLl~~~~-------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 6899999999996422 245677888888876 7999999999999999999998653
No 156
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.66 E-value=0.018 Score=52.60 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=37.2
Q ss_pred eeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 160 YELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~ 200 (360)
....|||+.+||+.+.+ ++.++|-|++...|++++++.++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~ 109 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVE 109 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCC
Confidence 36789999999999988 799999999999999999998743
No 157
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.58 E-value=0.031 Score=51.12 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=46.8
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.|++++||||||+.+.. ...|...+-|..+.+ +..++|-|.-+...+..+++.+++.
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR-------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eeEEEEecCCCcCCCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 47999999999996532 145667788888876 7999999999999999999998754
No 158
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.57 E-value=0.061 Score=51.51 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=67.1
Q ss_pred ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEE--EecCCceeecccccCc---ceeee
Q psy11202 159 GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFY--VDYSAMISVHLPKYGV---VEVKP 232 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~v--l~~~~~~~~~~~~~g~---~~~Kd 232 (360)
..+..|||+.+||+.|.+ ++.++|+|++...+++.+++.+|+.......++-. ++.+.+.+ ...+. .+.|.
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvlt---G~~~P~i~~~~K~ 194 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLK---GFKGPLIHTFNKN 194 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEe---CCCCCcccccccH
Confidence 357889999999999987 79999999999999999999998753322222221 22221111 01111 12232
Q ss_pred chhh--cccC-CCCCCCCcEEEEeCCchhhccC-----CCCeeEecccc
Q psy11202 233 LGVI--WGKF-PSLYNPTNTIMFDDIRRNFLMN-----PRNGLRIRPFR 273 (360)
Q Consensus 233 L~~l--~~~~-~~~~~~~ntIivDD~~~~~~~~-----p~Ngi~I~~f~ 273 (360)
-..+ ++.+ ....+++|||+|-|+..-..|. ..|.|+| .|-
T Consensus 195 ~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfl 242 (277)
T TIGR01544 195 HDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYL 242 (277)
T ss_pred HHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-Eec
Confidence 2211 1111 1113468999999998776653 3455655 553
No 159
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.55 E-value=0.023 Score=52.11 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=34.2
Q ss_pred ecCccHHHHHH-HHh-cCCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 162 LMRPYLHEFLT-SAY-KNYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 162 ~~RP~l~eFL~-~l~-~~yeivIwTas~~~ya~~il~~L~~ 200 (360)
..+|++.+.|+ .+. +++.++|-|++...|++++++..++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccc
Confidence 46899999996 777 5999999999999999999988644
No 160
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.54 E-value=0.029 Score=51.91 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=45.0
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++++||||||++... .-|...++|+.+.+ +..++|.|.-+...+..+++.+|+.
T Consensus 1 li~~DlDGTLl~~~~--------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY--------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCC--------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 478999999998421 23568999999987 7999999999999999999999864
No 161
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.49 E-value=0.018 Score=51.52 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCceEEeecccceeecC----CCcccc-eeecCccHHHHHHHHh-cCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q psy11202 137 GKKLLVLDIDYTLFDHR----SAAEQG-YELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAF 210 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~----~~~~~~-~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~ 210 (360)
+.+++++|+||||++.. ...... .+..|.+ .=++.+. +++.++|-|+.....+..+++.+++... |
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~------f 91 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHL------Y 91 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCcee------e
Confidence 58999999999999752 111111 1111221 2334444 5899999999999999999999976421 1
Q ss_pred EEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 211 YVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 211 vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
+ .. .++ . .-+..+-..+ + .++++|++|-|+..-..+-...|+.+.
T Consensus 92 --~-g~-----~~k--~---~~l~~~~~~~-g-l~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 92 --Q-GQ-----SNK--L---IAFSDLLEKL-A-IAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred --c-CC-----CcH--H---HHHHHHHHHh-C-CCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 1 00 000 0 1111111111 2 456899999999888777766777653
No 162
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.48 E-value=0.031 Score=50.76 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=45.4
Q ss_pred EEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 141 LVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 141 LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
|++||||||+++... .-|...+.|+.+.+ ++.++|-|.-+...+..++..+++.
T Consensus 1 i~~DlDGTLl~~~~~-------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999985431 35788888888884 9999999999999999999988654
No 163
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.032 Score=47.86 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=31.3
Q ss_pred eecCccHHHHHHHHhcCCeEEEEcCC--cHHHHHHHHHHh
Q psy11202 161 ELMRPYLHEFLTSAYKNYDIAIWSAT--GMKWIEEKMKLL 198 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~yeivIwTas--~~~ya~~il~~L 198 (360)
...-||.++-+++|-++|+|.|-||+ .+.-++...+.|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl 106 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWL 106 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHH
Confidence 45679999999999999999999999 566666666655
No 164
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.40 E-value=0.035 Score=52.52 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.++++++||||||++... . .-|-..+-|..+.+ +..++|-|.-+...+..+++.|++.
T Consensus 6 ~~~lI~~DlDGTLL~~~~-----~--i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHT-----Y--DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccCCcCCCC-----c--CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 568999999999997532 1 22445677888876 8999999999999999999999863
No 165
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.39 E-value=0.026 Score=54.20 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc-
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK- 239 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~- 239 (360)
...||+.+||+++.+ +|.++|-|+++..++..+++.++......+ +.++ ..+ ..+ ..|+-..++..
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~-~~~v-~~~--------~~~--~~KP~p~~~~~a 211 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQG-LDVF-AGD--------DVP--KKKPDPDIYNLA 211 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCc-eEEE-ecc--------ccC--CCCCCHHHHHHH
Confidence 568999999999987 899999999999999999987632222221 1111 111 112 13555544321
Q ss_pred --CCCCCCCCcEEEEeCCchhhccCCCCeeEecccc
Q psy11202 240 --FPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFR 273 (360)
Q Consensus 240 --~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~ 273 (360)
..+ .+++++|+|+|++..+.....+|+.+.-+.
T Consensus 212 ~~~~~-~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~ 246 (286)
T PLN02779 212 AETLG-VDPSRCVVVEDSVIGLQAAKAAGMRCIVTK 246 (286)
T ss_pred HHHhC-cChHHEEEEeCCHHhHHHHHHcCCEEEEEc
Confidence 112 567999999999999998888998766554
No 166
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.36 E-value=0.044 Score=51.37 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=45.8
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.|++++||||||++... ..-|-..+-|..+.+ +..++|-|.-+...+..+++.|++.
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccEEEEeCCCceECCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 58999999999997532 134456677888876 8999999999999999999998753
No 167
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.17 E-value=0.041 Score=51.39 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=45.1
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++++||||||++... ..-|...+.|+.+.+ ++.++|-|..+...+..+++.+++.
T Consensus 1 li~~DlDGTLl~~~~-------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 478999999997532 135667788888886 8999999999999999999998653
No 168
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.15 E-value=0.05 Score=51.36 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=46.4
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.|++++||||||+.... ..-|.-.+-|..+.+ +..++|-|.-+...+..+++.+++.
T Consensus 2 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH-------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCC-------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 47999999999997532 134556777888876 7999999999999999999998763
No 169
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.13 E-value=0.081 Score=53.87 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCCCceEEeecccceeecCC--Ccccc-ee-ecCc-----cHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCC
Q psy11202 135 RPGKKLLVLDIDYTLFDHRS--AAEQG-YE-LMRP-----YLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNP 204 (360)
Q Consensus 135 ~~~kk~LVLDLD~TLv~~~~--~~~~~-~~-~~RP-----~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~ 204 (360)
.+.+|+||||||+||+--.- ....+ .. -.-| -++.|...+++ ++=++|-|-..+.-|..+..+ +|
T Consensus 219 g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~k-----hp 293 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRK-----HP 293 (574)
T ss_pred CcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhh-----CC
Confidence 34789999999999995321 10000 00 0011 25777888876 899999999999999987753 45
Q ss_pred CceEEEEEecC--CceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCe-eEeccc
Q psy11202 205 NYKIAFYVDYS--AMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNG-LRIRPF 272 (360)
Q Consensus 205 ~~~i~~vl~~~--~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ng-i~I~~f 272 (360)
+ +++-.+ +||..+=.. -.-++++|-.++ + .+.+-.+++||+|.....=..++ +.|++|
T Consensus 294 ~----MiLkeedfa~~~iNW~~----K~eNirkIAkkl-N-lg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~ 354 (574)
T COG3882 294 D----MILKEEDFAVFQINWDP----KAENIRKIAKKL-N-LGLDSMVFIDDNPAERELVKRELPVSVIEF 354 (574)
T ss_pred C----eEeeHhhhhhheecCCc----chhhHHHHHHHh-C-CCccceEEecCCHHHHHHHHhcCceeeccC
Confidence 3 222222 222211011 123344443333 1 45688999999998875443343 667777
No 170
>PRK10976 putative hydrolase; Provisional
Probab=95.12 E-value=0.046 Score=51.31 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=45.8
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.|++++||||||++.... .-|...+-|..+.+ +..++|-|.-+...+..+++.+++.
T Consensus 2 ikli~~DlDGTLl~~~~~-------is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHT-------LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCc-------CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 479999999999976321 34556677888876 8999999999999999999998653
No 171
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.10 E-value=0.053 Score=52.31 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=45.6
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
+|++++||||||+++.. ++ -+-..+-|+.|.+ +..|++-|+-+..-+..+++.|++.
T Consensus 1 ~KLIftDLDGTLLd~~~-----~~--~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF-----NS--YGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCC-----cC--CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 47899999999998643 11 2336677888886 8999999999999999999999764
No 172
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.08 E-value=0.043 Score=44.26 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=38.4
Q ss_pred EEEEeC--CCCCHHHHHHHHHHHh--CCCccCeeeeccccCCCCCCCccccccc
Q psy11202 16 YKTSLS--KSNTVLELKQEILKQT--GVNPERQKLLNLKHAGKIPSDDTKLADT 65 (360)
Q Consensus 16 ~~i~v~--~~~Tv~~LK~~I~~~t--gVp~~rQKLlgl~~kgk~l~D~~~L~~~ 65 (360)
.+++++ .+.||..||..|-+.. ...-.|+||| |.|++|.|...|+..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI---~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLI---YAGRLLNDHTDLSSE 64 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEee---ecCcccCccchhhhh
Confidence 445555 7799999999999998 3566788999 999999999877665
No 173
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.92 E-value=0.052 Score=50.84 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=45.0
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++++||||||++... . .-|...+++..+.+ ++.++|-|.-+...+..+++.+++.
T Consensus 1 li~~DlDGTll~~~~-----~--~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-----Y--DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCC-----c--CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 478999999997642 1 12347899999987 7999999999999999999999763
No 174
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.88 E-value=0.058 Score=50.44 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=38.2
Q ss_pred eeecCccHHHHHHHHh--c-CCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 160 YELMRPYLHEFLTSAY--K-NYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~--~-~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
.+..-||+.+|++++. + .++++|-|-+..-|++.+|+.-|+..
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~ 114 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD 114 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc
Confidence 4667899999999994 3 89999999999999999999998753
No 175
>PLN02645 phosphoglycolate phosphatase
Probab=94.67 E-value=0.1 Score=50.66 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=43.4
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHH---HHhCCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKM---KLLGVTV 202 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il---~~L~~~~ 202 (360)
.++++||+||||++.. .+ =|+..++|+.+.+ +..+++-|+.+......++ +.+|+..
T Consensus 28 ~~~~~~D~DGtl~~~~------~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~ 88 (311)
T PLN02645 28 VETFIFDCDGVIWKGD------KL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV 88 (311)
T ss_pred CCEEEEeCcCCeEeCC------cc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 4689999999999742 12 2999999999986 8999999998855554444 5566643
No 176
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.59 E-value=0.035 Score=55.42 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=84.1
Q ss_pred CCceEEeecccceeecCCCc--------------------------ccceeecCccHHHHHHHHhcCCeEEEEcCCcHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAA--------------------------EQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKW 190 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~--------------------------~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~y 190 (360)
.+..||.|+|.|.+|+.... ..++++.||.+..|+....+.|++.+++.++..|
T Consensus 25 ~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~ 104 (390)
T COG5190 25 KKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRAY 104 (390)
T ss_pred cccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccccc
Confidence 56678999999999976421 1368899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhh---ccCCCCee
Q psy11202 191 IEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNF---LMNPRNGL 267 (360)
Q Consensus 191 a~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~---~~~p~Ngi 267 (360)
++.+.+.+....+- . .++-.. .+..+....|-+++++-. +...++++||.+..+ -++ .|.+
T Consensus 105 ~~~~~~i~d~~g~~----~----~d~~~~--~~~~~~~~~~s~~~l~p~-----~~n~~vi~~d~~~~~~~~d~~-~~~v 168 (390)
T COG5190 105 AERIAKIIDPTGKL----F----NDRILS--RDESGSLSQKSLSRLFPK-----DQNMVVIIDDRGDVWGVGDMN-SNFV 168 (390)
T ss_pred hhhhhhcccccccc----c----cccccc--ccccccchhhhhhhcCcc-----ccccccccccccccCCccchh-hhhh
Confidence 99999877443221 0 111111 122334456777777432 457788899988887 444 5556
Q ss_pred Eecc
Q psy11202 268 RIRP 271 (360)
Q Consensus 268 ~I~~ 271 (360)
...+
T Consensus 169 ~~~~ 172 (390)
T COG5190 169 AKSP 172 (390)
T ss_pred cccc
Confidence 6666
No 177
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=94.58 E-value=0.24 Score=38.03 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=55.2
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccC-eeeeccccCCCCCCCc--cccccccCCCCCEEEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPER-QKLLNLKHAGKIPSDD--TKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~r-QKLlgl~~kgk~l~D~--~~L~~~~l~~g~~i~l 75 (360)
.++|.|+. .|+.+.-.+.+++||.+|..-|......+... =.|+ ..+..+.+.++ .+|.++|+.+++.|+|
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~-~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELI-TAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEE-ESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEE-eCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 57899997 67778888999999999999999998877765 4554 11444444443 6999999999998876
No 178
>KOG1639|consensus
Probab=94.56 E-value=0.066 Score=49.91 Aligned_cols=69 Identities=30% Similarity=0.389 Sum_probs=50.8
Q ss_pred EEEEEECCe--EEE-EEeCCCCCHHHHHHHHHHH-hCCCccCeeeeccc--cCCCCCCCccccccccCCCCCEEEE
Q psy11202 6 NLIIKWNSK--EYK-TSLSKSNTVLELKQEILKQ-TGVNPERQKLLNLK--HAGKIPSDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 6 ~i~vk~~g~--~~~-i~v~~~~Tv~~LK~~I~~~-tgVp~~rQKLlgl~--~kgk~l~D~~~L~~~~l~~g~~i~l 75 (360)
.|+++.+++ ... .+++..+|+.|++..|... ..+.|.+|++- ++ -+|+++.|+.+|+++++.+|++|.+
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~t-lr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLT-LRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhhe-eeccCCCccccchhHHHHhccCCCCEEEE
Confidence 366665554 455 4577889999999766655 56788555553 22 4899999999999999999988875
No 179
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.45 E-value=0.067 Score=50.79 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=45.7
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc--CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK--NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivIwTas~~~ya~~il~~L 198 (360)
.+.++++|+||||+........ ...-|.+.+-|..|.+ +..++|-|.-+...+..++..+
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~--~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQ--VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CCEEEEEecCCCCCCCCCCccc--ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 4678999999999975433222 2245888888999985 6889999999999888777554
No 180
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.31 E-value=0.36 Score=37.11 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=55.8
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCc---cccccccCCCCCEEEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD---TKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~---~~L~~~~l~~g~~i~l 75 (360)
..+|.|+. +|......++.++||.++.+-|....+.....-.|+- .+..+.+.++ .+|.++|+.+++.++|
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t-~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNS-PFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEe-CCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 46788885 7777888999999999999999777776666677762 2566666543 6899999999888875
No 181
>PLN02811 hydrolase
Probab=94.29 E-value=0.057 Score=49.39 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=62.8
Q ss_pred ecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHH-HhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc--
Q psy11202 162 LMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMK-LLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW-- 237 (360)
Q Consensus 162 ~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~-~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~-- 237 (360)
...||+.+||+.|.+ +|.++|-|++...++...+. ..++...+.. ++..+ +...+ ..|+=..++
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~----i~~~~------~~~~~--~~KP~p~~~~~ 145 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHH----VVTGD------DPEVK--QGKPAPDIFLA 145 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCE----EEECC------hhhcc--CCCCCcHHHHH
Confidence 357999999999987 89999999998876654433 2233332221 11111 00111 135544444
Q ss_pred --ccCC--CCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 238 --GKFP--SLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 238 --~~~~--~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
.++. + .++++||+|+|+...+......|++..-+
T Consensus 146 a~~~~~~~~-~~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 146 AARRFEDGP-VDPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred HHHHhCCCC-CCccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 1121 2 56799999999999998888889876655
No 182
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.21 E-value=0.071 Score=47.33 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCceEEeecccceeecCC----C-cccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEE
Q psy11202 137 GKKLLVLDIDYTLFDHRS----A-AEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFY 211 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~----~-~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~v 211 (360)
.-+++|+|.||||.+-.- . .+...+..|-+.--.+-. ..++.++|-|+.+..++..+++.+++... |
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~-~~Gi~laIiT~k~~~~~~~~l~~lgi~~~------f- 77 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQ-LCGIDVAIITSKKSGAVRHRAEELKIKRF------H- 77 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHH-HCCCEEEEEECCCcHHHHHHHHHCCCcEE------E-
Confidence 478999999999997531 1 122345556655432211 35899999999999999999999976521 1
Q ss_pred EecCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 212 VDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 212 l~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
+. . .++ -+.+..+-..+ + .++++|++|.|+..-..+-...|+.+.+-
T Consensus 78 -~~---~---kpk-----p~~~~~~~~~l-~-~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 78 -EG---I---KKK-----TEPYAQMLEEM-N-ISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred -ec---C---CCC-----HHHHHHHHHHc-C-cCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 00 0 000 11222222222 2 46689999999998887777778776665
No 183
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.19 E-value=0.065 Score=49.61 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=64.1
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhC---CCCCCCceEEEEEecCCceeecccccCcceeeechhh
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLG---VTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVI 236 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~---~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l 236 (360)
....|++.++|+++.+ ++.++|+|+++..+...+++.++ +..+.. .+++.. .| .|+=+..
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~----~~fd~~---------~g---~KP~p~~ 157 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS----GYFDTT---------VG---LKTEAQS 157 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc----eEEEeC---------cc---cCCCHHH
Confidence 4578999999999976 89999999999999998887752 222221 122211 11 1433333
Q ss_pred cccC---CCCCCCCcEEEEeCCchhhccCCCCeeEeccc
Q psy11202 237 WGKF---PSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPF 272 (360)
Q Consensus 237 ~~~~---~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f 272 (360)
|... .+ .+++++++|+|+...+......|+...-+
T Consensus 158 y~~i~~~lg-v~p~e~lfVgDs~~Di~AA~~AG~~ti~v 195 (220)
T TIGR01691 158 YVKIAGQLG-SPPREILFLSDIINELDAARKAGLHTGQL 195 (220)
T ss_pred HHHHHHHhC-cChhHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 3110 12 46799999999999888888888775444
No 184
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.17 E-value=0.034 Score=49.89 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=44.1
Q ss_pred eecCccHHHHHHHHhcC-CeEEEEcCCcHH----HHHHHHHHh----CCCCCCCceEEEEEecCCceeecccccCcceee
Q psy11202 161 ELMRPYLHEFLTSAYKN-YDIAIWSATGMK----WIEEKMKLL----GVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVK 231 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~~-yeivIwTas~~~----ya~~il~~L----~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~K 231 (360)
...-||+.|.|+.|.+. +++++-||+... -++...+-| +.. +...+.+ .+ -|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i--~~~~~~~--~~---------------~K 132 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFI--PYDNLIF--TG---------------DK 132 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHH--HHCCEEE--ES---------------SG
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCC--chheEEE--ec---------------CC
Confidence 45568999999999984 577777777654 233333333 111 1111111 00 13
Q ss_pred echhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEecccccC
Q psy11202 232 PLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREA 275 (360)
Q Consensus 232 dL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~~f~~~ 275 (360)
. .+.. =|+|||++.++..-...|+++.=|..+
T Consensus 133 ~--~v~~----------DvlIDD~~~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 133 T--LVGG----------DVLIDDRPHNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp G--GC------------SEEEESSSHHHSS-SSESSEEEEE--G
T ss_pred C--eEec----------cEEecCChHHHHhccCCCceEEEEcCC
Confidence 2 1211 179999999998877888666555443
No 185
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=94.10 E-value=0.1 Score=46.80 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=43.7
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L 198 (360)
++++|+||||++... ....|.+.+.|+.+.+ +..++|-|..+..++..+++.+
T Consensus 1 li~~D~DgTL~~~~~------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CEEEeCcCCCcCCCC------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 578999999997431 1245888899999987 5899999999999999999874
No 186
>PRK10444 UMP phosphatase; Provisional
Probab=94.05 E-value=0.098 Score=49.23 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=43.7
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L 198 (360)
+++++||||||++... .=|+..+||+.+.+ +..+++-|.++......+.++|
T Consensus 2 ~~v~~DlDGtL~~~~~--------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHDNV--------AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeCCe--------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 5789999999997631 36999999999987 8999999999987777776666
No 187
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.02 E-value=0.11 Score=47.14 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=42.2
Q ss_pred EEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 141 LVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 141 LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~ 200 (360)
+++||||||+++.. ...|-..+-|..+.+ +..++|-|.-+...+..+++.++.
T Consensus 1 i~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 58999999997642 134555677777776 799999999999999999999863
No 188
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.00 E-value=0.17 Score=47.78 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHH---HHHHHHHHhCCC
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMK---WIEEKMKLLGVT 201 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~---ya~~il~~L~~~ 201 (360)
++++||+||||++..... -..=|+..+||+.+.+ +..+++-|..+.. .+...++.+|+.
T Consensus 2 k~i~~D~DGtl~~~~~~~----~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS----GVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcc----cCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 589999999999763210 1136899999999997 8999999975554 355566667754
No 189
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=93.94 E-value=0.11 Score=48.38 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=43.6
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCC-eEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNY-DIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~y-eivIwTas~~~ya~~il~~L~~~ 201 (360)
+.+++.||||||+++.. ..-...|.+.+.++.+.+.. .+++-|+-+..-+..+++.+++.
T Consensus 1 ~~li~tDlDGTLl~~~~----~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTD----GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred CeEEEEcCCCcCcCCCC----CChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 35788899999997532 11224577888888877644 77888888888888888878654
No 190
>KOG1769|consensus
Probab=93.90 E-value=0.42 Score=38.46 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=63.5
Q ss_pred eEEEEEEEC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 4 SLNLIIKWN-SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 4 ~i~i~vk~~-g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
-|+++|+-. +....+.|--++++.-|...-++..|++...-+.+ |.|..+.+..+-.++++.+|+.|-++..-
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl---FdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL---FDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE---ECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 378888853 44456788899999999999999999999999999 99999999999999999999999887543
No 191
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=93.86 E-value=0.17 Score=44.72 Aligned_cols=107 Identities=22% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEec
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDY 214 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~ 214 (360)
.+.+.+|+|||+||+.-... ..=|-+.+.+..+.. .-.++|.|..+..=+...+..||+. |++..
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~--------fi~~A 91 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNP------DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP--------FIYRA 91 (175)
T ss_pred cCCcEEEEeccCceecccCC------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc--------eeecc
Confidence 48999999999999954321 135778889999987 7999999999999999999888653 22111
Q ss_pred CCceeecccccCcceeeechhhc----ccCCCCCCCCcEEEEeCCchhhcc-CCCCe---eEecccc
Q psy11202 215 SAMISVHLPKYGVVEVKPLGVIW----GKFPSLYNPTNTIMFDDIRRNFLM-NPRNG---LRIRPFR 273 (360)
Q Consensus 215 ~~~~~~~~~~~g~~~~KdL~~l~----~~~~~~~~~~ntIivDD~~~~~~~-~p~Ng---i~I~~f~ 273 (360)
-|+.+.=+ ..+ + +++++|+||-|.---=.+ -..+| |.|.|-.
T Consensus 92 ---------------~KP~~~~fr~Al~~m-~-l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 92 ---------------KKPFGRAFRRALKEM-N-LPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred ---------------cCccHHHHHHHHHHc-C-CChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 23333222 111 2 677999999996433222 23444 5677774
No 192
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.81 E-value=0.15 Score=45.32 Aligned_cols=60 Identities=28% Similarity=0.297 Sum_probs=46.5
Q ss_pred CCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcC-C--eEEEEcCCc-------HHHHHHHHHHhCC
Q psy11202 135 RPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKN-Y--DIAIWSATG-------MKWIEEKMKLLGV 200 (360)
Q Consensus 135 ~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~-y--eivIwTas~-------~~ya~~il~~L~~ 200 (360)
..+-+.||||+|+||.... .-..-|-+.+.+++|.+. . .|+|.|.+. ..-|+.+-+.||+
T Consensus 38 ~~Gik~li~DkDNTL~~~~------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI 107 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI 107 (168)
T ss_pred hcCceEEEEcCCCCCCCCC------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC
Confidence 3588999999999998542 233467788889999884 4 499999984 6778888888864
No 193
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.62 E-value=0.24 Score=46.44 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcC---CcHHHHHHHHHHhCCCC
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSA---TGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTa---s~~~ya~~il~~L~~~~ 202 (360)
+++++||||||++... .=|+..++|+.+.+ +..+++-|. -+..-+...++.+|+..
T Consensus 2 ~~~~~D~DGtl~~~~~--------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~ 61 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE--------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA 61 (249)
T ss_pred CEEEEeCCCceEcCCe--------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 5789999999997532 13688999999987 799999995 34555666777777653
No 194
>PTZ00174 phosphomannomutase; Provisional
Probab=93.60 E-value=0.15 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=39.7
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMK 196 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~ 196 (360)
..|++++||||||+++... .-|...+-|..+.+ +..++|-|.-+..-+...+.
T Consensus 4 ~~klia~DlDGTLL~~~~~-------is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-------ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 4689999999999976431 24556777888876 79999999987775555444
No 195
>PLN02887 hydrolase family protein
Probab=93.45 E-value=0.16 Score=53.58 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=47.4
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++.|++++||||||+++... .-|.-.+-|+.+.+ ++.++|-|.-+...+..+++.+++.
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~-------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQ-------ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred cCccEEEEeCCCCCCCCCCc-------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 46789999999999976321 34455677888876 8999999999999999999998764
No 196
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.32 E-value=0.19 Score=46.87 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCCCCceEEeecccceeecCCC---------cc----------cceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHH
Q psy11202 133 EPRPGKKLLVLDIDYTLFDHRSA---------AE----------QGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIE 192 (360)
Q Consensus 133 ~~~~~kk~LVLDLD~TLv~~~~~---------~~----------~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~ 192 (360)
+...+|..+|||+|+|+++..+. .+ ...-..-|+..+|++.+.+ +++|++.|.-+....+
T Consensus 72 ~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~ 151 (229)
T TIGR01675 72 LSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRN 151 (229)
T ss_pred ccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence 33469999999999999975420 01 1234568999999999976 9999999999987744
Q ss_pred HHHHHh
Q psy11202 193 EKMKLL 198 (360)
Q Consensus 193 ~il~~L 198 (360)
..++.|
T Consensus 152 ~T~~nL 157 (229)
T TIGR01675 152 ATLDNL 157 (229)
T ss_pred HHHHHH
Confidence 444444
No 197
>PRK06437 hypothetical protein; Provisional
Probab=93.29 E-value=0.35 Score=36.14 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCceEEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 1 MGDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 1 m~~~i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|..+|+++ +++.-.++++...||++|=++ .|++++.-.+. ..|.++. .+.-|++|++|-++
T Consensus 1 ~~~~~~v~---g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~---vNg~iv~-----~~~~L~dgD~Veiv 61 (67)
T PRK06437 1 MIAMIRVK---GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVI---VNGSPVL-----EDHNVKKEDDVLIL 61 (67)
T ss_pred CcceEEec---CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEE---ECCEECC-----CceEcCCCCEEEEE
Confidence 66666666 666677788888899887544 48888777666 7888776 34468899999776
No 198
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=93.17 E-value=0.31 Score=46.37 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=42.0
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHH---HHHHHHHHhCCCCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMK---WIEEKMKLLGVTVN 203 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~---ya~~il~~L~~~~~ 203 (360)
-+++++||||||++... .=|+..++|+.+.+ +..+++-|+++.. .....++.+|+...
T Consensus 2 ~~~~~~D~DGtl~~~~~--------~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~ 63 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGER--------VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL 63 (279)
T ss_pred ccEEEEeCCCceEcCCe--------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 36889999999986421 35789999999987 7999999985532 22245666776433
No 199
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.03 E-value=0.22 Score=53.17 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~ 200 (360)
..+|++++||||||+++.. ++. |...+-|..+.+ +..++|-|.-+...+..+++.|++
T Consensus 414 ~~~KLIfsDLDGTLLd~d~-----~i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT-----YSY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred ceeeEEEEECcCCCcCCCC-----ccC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 3788999999999998643 111 224566777776 799999999999999999999975
No 200
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=92.84 E-value=0.13 Score=48.05 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=35.2
Q ss_pred cCCCCCCCCceEEeecccceeecCCC------------ccc-------ceeecCccHHHHHHHHhcC
Q psy11202 130 ILNEPRPGKKLLVLDIDYTLFDHRSA------------AEQ-------GYELMRPYLHEFLTSAYKN 177 (360)
Q Consensus 130 i~~~~~~~kk~LVLDLD~TLv~~~~~------------~~~-------~~~~~RP~l~eFL~~l~~~ 177 (360)
.+++++.+++.+|||||+|.++-+.. +++ ..-..=||.-|||+++-++
T Consensus 71 ~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~ 137 (274)
T COG2503 71 QAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSN 137 (274)
T ss_pred hhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhc
Confidence 55677778889999999999986531 111 1234569999999888764
No 201
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.77 E-value=0.23 Score=48.44 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=42.7
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhc-----CCeEEEEcCCc----HHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-----NYDIAIWSATG----MKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-----~yeivIwTas~----~~ya~~il~~L~~~ 201 (360)
.++||+||||++... .-|+..+||+.+.. +..+.+.|..+ ..+++.+.+.+|+.
T Consensus 2 ~~ifD~DGvL~~g~~--------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK--------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceECCcc--------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 589999999997632 27899999999987 78999999775 45566666777764
No 202
>KOG0013|consensus
Probab=92.15 E-value=0.25 Score=44.98 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=55.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
-++.+-+.++.-.|+.++|.++.+.-|+.|-.|++. ++|+++-|.+.|..+++..|++..+-+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif---~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIF---FSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheee---ccCCceeccccceeeeecCCCEEEEEE
Confidence 344566677777899999999999999999999999 999999999999999999998776654
No 203
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=92.11 E-value=0.45 Score=45.00 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCceEEeecccceeecCCC-----------------------c----c----------cceeecCccHHHHHHHHhc-CC
Q psy11202 137 GKKLLVLDIDYTLFDHRSA-----------------------A----E----------QGYELMRPYLHEFLTSAYK-NY 178 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~-----------------------~----~----------~~~~~~RP~l~eFL~~l~~-~y 178 (360)
...++|||+|.||+-+... + + ......=|.+.+|++.+.+ +.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 6678999999999965420 0 0 1234556888999999986 89
Q ss_pred eEEEEcCCcHHHHHHHHHHh
Q psy11202 179 DIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 179 eivIwTas~~~ya~~il~~L 198 (360)
.++..|+..+.+...-++.|
T Consensus 99 ~v~alT~~~~~~~~~t~~~L 118 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLREL 118 (252)
T ss_pred cEEEEcCCChhhHHHHHHHH
Confidence 99999999998888888777
No 204
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.84 E-value=1.2 Score=34.34 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=53.6
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCC---ccccccccCCCCCEEEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSD---DTKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D---~~~L~~~~l~~g~~i~l 75 (360)
..+|.|+. +|+...-.++.++|+.++.+-|....+.. ..-.|+ ..+..|.+.+ +.+|.++|+.|...|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~-t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLM-TPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEE-eCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46788884 78878888999999999999998765433 445665 2256676654 37899999999988876
No 205
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.76 E-value=0.81 Score=35.56 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=38.1
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
..|+|.+.+ ++.|.++++.+..+|.++|.+..++|+++-+|-
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~Ls 44 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLS 44 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEE
Confidence 567777777 889999999999999999999999999998887
No 206
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=91.60 E-value=1.5 Score=33.26 Aligned_cols=68 Identities=9% Similarity=0.236 Sum_probs=49.6
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCC---ccccccccCCCCCEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSD---DTKLADTNATDGFKL 73 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D---~~~L~~~~l~~g~~i 73 (360)
+.+|.|+. +|+...-.++.++||.+|.+-|.....- +..-.|+- .+..+.+.+ +.+|.++||.++..+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t-~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMT-SFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEe-CCCCccCCCCCccCcHHHcCCccceEE
Confidence 45788885 6777888899999999999999876543 44455652 255566654 679999999965444
No 207
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=91.25 E-value=0.33 Score=43.64 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=70.2
Q ss_pred CceEEeecccceeecCCC-ccc-ceeecCccHHHHHHHHhc-CCeEEEEcCCcH---------------HHHHHHHHHhC
Q psy11202 138 KKLLVLDIDYTLFDHRSA-AEQ-GYELMRPYLHEFLTSAYK-NYDIAIWSATGM---------------KWIEEKMKLLG 199 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~-~~~-~~~~~RP~l~eFL~~l~~-~yeivIwTas~~---------------~ya~~il~~L~ 199 (360)
.++|+||.||||.--..+ ... -.....|++-+-|..+.+ .|.+||+|..+- .+....+...|
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~g 84 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQG 84 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcC
Confidence 789999999999964432 111 256779999999999987 999999998332 22223333333
Q ss_pred CCCCCCceEEEEEecCCceeecccccCcceeeechhhcccCCC--CCCCCcEEEEeCCchhhccCCCCee
Q psy11202 200 VTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPS--LYNPTNTIMFDDIRRNFLMNPRNGL 267 (360)
Q Consensus 200 ~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~~~~--~~~~~ntIivDD~~~~~~~~p~Ngi 267 (360)
+. ..... ++. |.+..+..+-|+-..++..+.. ..++++.++|=|...-..+.-..|+
T Consensus 85 v~--id~i~---~Cp------h~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi 143 (181)
T COG0241 85 VK--IDGIL---YCP------HHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGI 143 (181)
T ss_pred Cc--cceEE---ECC------CCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCC
Confidence 31 11111 111 1123233456776665532210 1577999999998655444433333
No 208
>PLN02423 phosphomannomutase
Probab=91.20 E-value=0.52 Score=44.16 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWI 191 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya 191 (360)
-+.++++||||||++... . .-|...+.++.+.+...++|.|..+...+
T Consensus 6 ~~~i~~~D~DGTLl~~~~-----~--i~~~~~~ai~~l~~~i~fviaTGR~~~~~ 53 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK-----E--ATPEMLEFMKELRKVVTVGVVGGSDLSKI 53 (245)
T ss_pred cceEEEEeccCCCcCCCC-----c--CCHHHHHHHHHHHhCCEEEEECCcCHHHH
Confidence 344566999999997542 1 24666788888888877788777644433
No 209
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=90.82 E-value=0.48 Score=45.16 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCCCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCe--EEEEcCCcHHHHHHHHH
Q psy11202 131 LNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYD--IAIWSATGMKWIEEKMK 196 (360)
Q Consensus 131 ~~~~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~ye--ivIwTas~~~ya~~il~ 196 (360)
.+....++++++||.||||.+.... +.-...=+.+.+.|..|...+. ++|.|--+..-++..+.
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~--p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPH--PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cccccccceEEEEeccccccccccC--ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 3344458899999999999987643 3455667889999999999988 88889888888887665
No 210
>KOG3120|consensus
Probab=90.56 E-value=0.56 Score=43.40 Aligned_cols=65 Identities=28% Similarity=0.368 Sum_probs=52.7
Q ss_pred CCCceEEeecccceeecCCC--------------------c-------------------c--------cceeecCccHH
Q psy11202 136 PGKKLLVLDIDYTLFDHRSA--------------------A-------------------E--------QGYELMRPYLH 168 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~--------------------~-------------------~--------~~~~~~RP~l~ 168 (360)
..+-++|||.|.|+|+-.++ . . --.+-.-||+-
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 37789999999999986551 0 0 01345579999
Q ss_pred HHHHHHhc--CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 169 EFLTSAYK--NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 169 eFL~~l~~--~yeivIwTas~~~ya~~il~~L~~ 200 (360)
+.++.+++ .||+.|-|-++.-+++.+|++.++
T Consensus 91 ~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred HHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 99999987 689999999999999999999964
No 211
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.12 E-value=1.1 Score=34.09 Aligned_cols=43 Identities=12% Similarity=0.344 Sum_probs=37.6
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
++|++.+++..+.+.++.+.|..+|+.+|....+.+....+|-
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~ 44 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLK 44 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6788889999999999999999999999999999876555554
No 212
>PLN02151 trehalose-phosphatase
Probab=90.07 E-value=0.39 Score=47.62 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHH
Q psy11202 134 PRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMK 196 (360)
Q Consensus 134 ~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~ 196 (360)
...++.+|+||+||||+..... +.....-|.+.+-|+.|.+.+.++|-|--+..-+...+.
T Consensus 94 ~~~~~~ll~lDyDGTL~PIv~~--P~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSPIVDD--PDRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred hcCCceEEEEecCccCCCCCCC--cccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 4456788999999999965432 234557799999999999999999999998888877653
No 213
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.05 E-value=2.6 Score=32.95 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=55.9
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCC---ccccccccCCCCCEEEE
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSD---DTKLADTNATDGFKLMV 75 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D---~~~L~~~~l~~g~~i~l 75 (360)
-+|.|+. +|+...-....++|+.+|-.-+.. -|.+++.-+|+ -.|--+.+.. +.+|.++|+.+..+|+|
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~-t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELL-TNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEe-cCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 5678886 788888889999999999999998 58899999998 2255555532 37999999999998876
No 214
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=89.35 E-value=0.55 Score=43.63 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=38.0
Q ss_pred EEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCc----HHHHHHHHHHhCCC
Q psy11202 141 LVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATG----MKWIEEKMKLLGVT 201 (360)
Q Consensus 141 LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~----~~ya~~il~~L~~~ 201 (360)
++||+||||++... .=|+..++|..+.. ++.+.+-|.++ ..+++.+.+.+|+.
T Consensus 1 ~lfD~DGvL~~~~~--------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 1 FLFDIDGVLWLGHK--------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred CEEeCcCccCcCCc--------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47999999998643 14689999999987 69999998544 34554444435543
No 215
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.17 E-value=3.2 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=49.0
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCC-ccCeeeeccccCCCCCCC-ccccccccCCCCC
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVN-PERQKLLNLKHAGKIPSD-DTKLADTNATDGF 71 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp-~~rQKLlgl~~kgk~l~D-~~~L~~~~l~~g~ 71 (360)
+.+|.|+. .|+...-.++.++||.+|.+-|....+-+ ...-.|+ ..|..+.+.| +.+|.++||.+..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~-t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLM-TAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEe-cCCCCcccCCCCCcHHHCCCcCcE
Confidence 46788885 67788889999999999999999876532 2334554 1255565554 6799999998643
No 216
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.86 E-value=3.8 Score=32.12 Aligned_cols=71 Identities=11% Similarity=0.261 Sum_probs=53.7
Q ss_pred ceEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCC--------CccccccccCCCCCEE
Q psy11202 3 DSLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPS--------DDTKLADTNATDGFKL 73 (360)
Q Consensus 3 ~~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~--------D~~~L~~~~l~~g~~i 73 (360)
+.++|.|+. +|....-....+.||.+|..-|... +..|+.-.|+- .|--+.+. .+.+|.++||.+...+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t-~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVT-NFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEec-CCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 357888885 6777788899999999999999754 55667788772 24345554 3569999999988777
Q ss_pred EE
Q psy11202 74 MV 75 (360)
Q Consensus 74 ~l 75 (360)
+|
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 217
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=88.49 E-value=0.84 Score=43.60 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L 198 (360)
...++.+||||||++-.. .=||..+||+.+.+ +-.+++-|.++.+..+.+..+|
T Consensus 7 ~y~~~l~DlDGvl~~G~~--------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE--------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hcCEEEEcCcCceEeCCc--------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456789999999996543 34999999999988 6899999988887666555555
No 218
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=88.38 E-value=0.43 Score=44.76 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=39.9
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHH-HHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCce
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLT-SAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYK 207 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~-~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~ 207 (360)
+.+|+-||||||+. .....+.-+.++|+ ......-+++-|..+...+..++...++. .|++-
T Consensus 2 ~~ll~sDlD~Tl~~-------~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd~~ 64 (247)
T PF05116_consen 2 PRLLASDLDGTLID-------GDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLP-QPDYI 64 (247)
T ss_dssp SEEEEEETBTTTBH-------CHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E-E-SEE
T ss_pred CEEEEEECCCCCcC-------CCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCC-CCCEE
Confidence 57899999999991 11112344555666 33347778888999999999999988663 35543
No 219
>PLN03017 trehalose-phosphatase
Probab=88.13 E-value=0.68 Score=46.11 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHH
Q psy11202 134 PRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKM 195 (360)
Q Consensus 134 ~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il 195 (360)
...++.+|+||+||||+...... .....=|.+.+-|+.+.+++.++|-|--+..-+...+
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p--~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDP--DKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCc--ccccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhh
Confidence 34477889999999999543311 1224568888999999999999999999888888763
No 220
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=88.13 E-value=0.29 Score=45.58 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCCceEEeecccceeecCCC------------c-------ccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHH-
Q psy11202 136 PGKKLLVLDIDYTLFDHRSA------------A-------EQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEK- 194 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~------------~-------~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~i- 194 (360)
.+++.+|||+|+|+++.... . ....-..=|+..+|++++.+ +++|++=|.-+...-+.-
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATE 149 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 58899999999999964321 0 01223667889999999987 799998887666544444
Q ss_pred --HHHhCC
Q psy11202 195 --MKLLGV 200 (360)
Q Consensus 195 --l~~L~~ 200 (360)
|.+.|.
T Consensus 150 ~nL~~~G~ 157 (229)
T PF03767_consen 150 KNLKKAGF 157 (229)
T ss_dssp HHHHHHTT
T ss_pred HHHHHcCC
Confidence 444464
No 221
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=87.91 E-value=2.5 Score=31.71 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=39.5
Q ss_pred EEEEECCe--EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 7 LIIKWNSK--EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 7 i~vk~~g~--~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
++|+.+|+ ...++++...||.+|-+++ +++++.-.+. ..|..... +..|++|+.|-++
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~---vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAK---VNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEE---ECCEECCC-----CcCcCCCCEEEEE
Confidence 44444555 6678888889999987666 6777553333 57766643 4458899998766
No 222
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.44 E-value=5.8 Score=30.67 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=55.9
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCC---CccccccccCCCCCEEEE
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPS---DDTKLADTNATDGFKLMV 75 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~---D~~~L~~~~l~~g~~i~l 75 (360)
.++|.|+. +|....-....++|+.+|-.-+... |.++..-+|+ ..|--+.+. .+.+|.++||.+..+|++
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~-t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLL-SSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEe-cCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 57788886 6777777899999999999999875 8888889987 335566664 246999999999988875
No 223
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.85 E-value=2.6 Score=32.18 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=38.8
Q ss_pred eEEEEEEECCeEEE-EEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 4 SLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 4 ~i~i~vk~~g~~~~-i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
++.|++.+++...- +.++.+.|..+|+.+|.+..+.++..-+|-
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~ 45 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLK 45 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEE
Confidence 47889999999988 999999999999999999999986666665
No 224
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=86.80 E-value=0.77 Score=42.29 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=38.9
Q ss_pred eEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 140 LLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++++||||||++.... . .|. .+-++...++..++|-|.-+..-+..++..+++.
T Consensus 1 li~~DlDgTLl~~~~~---~----~~~-~~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG---L----ASF-VELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred CeEEeccccccCCHHH---H----HHH-HHHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 4789999999974321 1 122 2555533347889999999999999999998764
No 225
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=86.69 E-value=2.6 Score=37.12 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=44.2
Q ss_pred EEEEEEE-CC----eEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCC--CCccccccccCC
Q psy11202 5 LNLIIKW-NS----KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIP--SDDTKLADTNAT 68 (360)
Q Consensus 5 i~i~vk~-~g----~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l--~D~~~L~~~~l~ 68 (360)
|+|-|+. .| .++.+.++.++||.+|+..|.+.+++++..|-.+-. ..++.+ .++..++.+.-.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~-~~n~~l~~~~~~~~s~l~~~ 70 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTT-NSNGQLSPSSDIPLSSLLSS 70 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEE-eCCCeeCCCccccHHhhccC
Confidence 3566664 66 578899999999999999999999999999743321 234333 445556665433
No 226
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=86.41 E-value=0.58 Score=43.61 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCe--EEEEcCCc
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYD--IAIWSATG 187 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~ye--ivIwTas~ 187 (360)
++.+|+||+||||+.....+ .....=|.+.+.|..|.+... |+|-|.-+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p--~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDP--DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCC--cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 56789999999999754322 233456899999999998654 45666554
No 227
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=86.23 E-value=0.22 Score=48.02 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=0.0
Q ss_pred eEEEEEEEC-CeEEEEEeC---C--CCCHHHHHHHHHH----------HhCCCccCee-----eeccccCCCCCCCcccc
Q psy11202 4 SLNLIIKWN-SKEYKTSLS---K--SNTVLELKQEILK----------QTGVNPERQK-----LLNLKHAGKIPSDDTKL 62 (360)
Q Consensus 4 ~i~i~vk~~-g~~~~i~v~---~--~~Tv~~LK~~I~~----------~tgVp~~rQK-----Llgl~~kgk~l~D~~~L 62 (360)
+|+|++|.. +-.+.|.++ + +.||.++|.++++ .++||.+..| || |+.|++.|..+|
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL---~~kkPv~~~ktl 154 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLL---YKKKPVGDSKTL 154 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhhe---ecCccCCCcCcH
Confidence 377777764 334445543 2 5789999999999 9999999999 99 898888777776
Q ss_pred ccccCC-------CC----CEEEEEccCcc
Q psy11202 63 ADTNAT-------DG----FKLMVMGSLEQ 81 (360)
Q Consensus 63 ~~~~l~-------~g----~~i~l~gs~~~ 81 (360)
.++.-. .| .-+|+||.+..
T Consensus 155 ~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~ 184 (309)
T PF12754_consen 155 AEVLADSESRLLSGGKEVEFGVMVLGGAAV 184 (309)
T ss_dssp ------------------------------
T ss_pred HHHHhcccchhccCCceEEEEEEEECCccc
Confidence 665211 12 24688886654
No 228
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=86.19 E-value=1 Score=48.97 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc--CCeEEEEcCCcHHHHHHHHHH
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK--NYDIAIWSATGMKWIEEKMKL 197 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivIwTas~~~ya~~il~~ 197 (360)
..++++++|+||||+...... .....-|.+.+.|+.|.+ +..|+|-|.-+...++..+..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~--~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDP--ELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred ccceEEEEecCccccCCCCCc--ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCC
Confidence 367899999999999754321 122345788899999987 789999999998888876643
No 229
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=86.12 E-value=1.7 Score=38.13 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=43.9
Q ss_pred eEEeecccceeecCCC----cccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 140 LLVLDIDYTLFDHRSA----AEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 140 ~LVLDLD~TLv~~~~~----~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L 198 (360)
.+|.|+||||.-+.-. ..-+.-+.+||+-++...+.+ +|.++--||-....+...-..|
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 3688999999977421 112334899999999999998 8998888888776666655555
No 230
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=85.87 E-value=1.6 Score=41.73 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=45.8
Q ss_pred CCCceEEeecccceeecCCC---------ccc-----------ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHH
Q psy11202 136 PGKKLLVLDIDYTLFDHRSA---------AEQ-----------GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEK 194 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~---------~~~-----------~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~i 194 (360)
.++..+|||+|+|+++..+. .+. .....=|+..+|++++.+ ++.|++.|.-....-+.-
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 37899999999999953220 010 122336899999999976 899999999987766666
Q ss_pred HHHh
Q psy11202 195 MKLL 198 (360)
Q Consensus 195 l~~L 198 (360)
++.|
T Consensus 179 ~~NL 182 (275)
T TIGR01680 179 EANL 182 (275)
T ss_pred HHHH
Confidence 6555
No 231
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.34 E-value=2.3 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=33.2
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVN 40 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp 40 (360)
|+|++.++|..+.+.++++.+..+|+++|.+..++.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 468888999999999999999999999999999875
No 232
>PLN02580 trehalose-phosphatase
Probab=85.19 E-value=1.6 Score=43.81 Aligned_cols=61 Identities=23% Similarity=0.158 Sum_probs=49.6
Q ss_pred CCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHH
Q psy11202 134 PRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMK 196 (360)
Q Consensus 134 ~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~ 196 (360)
...++.+|+||.||||....... -...+=|.+.+-|+.+++.+.++|-|--+..-++..+.
T Consensus 115 ~~~k~~~LfLDyDGTLaPIv~~P--d~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 115 AKGKKIALFLDYDGTLSPIVDDP--DRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred hhcCCeEEEEecCCccCCCCCCc--ccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhC
Confidence 34467889999999999765432 45566789999999999999999999999988887664
No 233
>KOG3085|consensus
Probab=84.84 E-value=1.4 Score=41.27 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=51.8
Q ss_pred HHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhccc---CCCCC
Q psy11202 169 EFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGK---FPSLY 244 (360)
Q Consensus 169 eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~~~---~~~~~ 244 (360)
++|+.+.+ .+.|+|.|....++= .++..+|+..+++.-+ .+...| .-|+-+.||.. ..+ .
T Consensus 120 ~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~~fD~vv------------~S~e~g--~~KPDp~If~~al~~l~-v 183 (237)
T KOG3085|consen 120 ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSAYFDFVV------------ESCEVG--LEKPDPRIFQLALERLG-V 183 (237)
T ss_pred HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHHhhhhhh------------hhhhhc--cCCCChHHHHHHHHHhC-C
Confidence 66777765 667777776666554 5666665554433211 011223 36888888731 122 4
Q ss_pred CCCcEEEEeCCchh-hccCCCCeeEeccc
Q psy11202 245 NPTNTIMFDDIRRN-FLMNPRNGLRIRPF 272 (360)
Q Consensus 245 ~~~ntIivDD~~~~-~~~~p~Ngi~I~~f 272 (360)
.|+.+|+|||+..+ +.....=|..-.=|
T Consensus 184 ~Pee~vhIgD~l~nD~~gA~~~G~~ailv 212 (237)
T KOG3085|consen 184 KPEECVHIGDLLENDYEGARNLGWHAILV 212 (237)
T ss_pred ChHHeEEecCccccccHhHHHcCCEEEEE
Confidence 57999999999998 65554444443333
No 234
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=84.77 E-value=3.4 Score=38.40 Aligned_cols=59 Identities=20% Similarity=0.104 Sum_probs=39.9
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
+-..++.+|||+||+.+...... - .+-+.++.. +|+|+.-||-+.-=....=+.||+..
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~p-------A-~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQP-------A-APVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCc-------c-chHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 45567888999999985432221 1 123445554 99999999988766666667777764
No 235
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=83.80 E-value=4.4 Score=31.61 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=35.2
Q ss_pred EEEEEEECCeEEEEEeCC--CCCHHHHHHHHHHHhCCCccCee
Q psy11202 5 LNLIIKWNSKEYKTSLSK--SNTVLELKQEILKQTGVNPERQK 45 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~--~~Tv~~LK~~I~~~tgVp~~rQK 45 (360)
|+|+++++|.+..+.+++ +.|..+|++.|....++++=..|
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lK 43 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIK 43 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeE
Confidence 578999999999999998 56999999999999999943333
No 236
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=83.14 E-value=4.8 Score=31.73 Aligned_cols=36 Identities=6% Similarity=0.160 Sum_probs=33.5
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVN 40 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp 40 (360)
|+|+|.++|....|.|+++.+..+|..+|.+..|+.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 678888999999999999999999999999999983
No 237
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=81.75 E-value=3.2 Score=37.52 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=36.9
Q ss_pred eeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhC
Q psy11202 160 YELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLG 199 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~ 199 (360)
.+..|||..+|.+++.+ .-.++|-||+...|+.++++.++
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 47889999999999998 79999999999999999999883
No 238
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=81.26 E-value=2.7 Score=32.22 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=40.5
Q ss_pred eCCCCCHHHHHHHHHHHhC-CCccCeeeeccccCCCCCCCccccccc-cCCCCCEEEEE
Q psy11202 20 LSKSNTVLELKQEILKQTG-VNPERQKLLNLKHAGKIPSDDTKLADT-NATDGFKLMVM 76 (360)
Q Consensus 20 v~~~~Tv~~LK~~I~~~tg-Vp~~rQKLlgl~~kgk~l~D~~~L~~~-~l~~g~~i~l~ 76 (360)
|+++++|.|+++.|..... -.-..=.|. ++|+.+++...|+++ |+++|.+|.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~---~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLE---HNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEE---ECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 5678999999999987743 122223344 799999888888888 68889988877
No 239
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=80.89 E-value=5.4 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=40.8
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|.-+|+.+.+ + ..|+.+|.+.+ +++++.-.+- +.+..+.. ..+++..|++|++|-++
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vava---vN~~iv~~-~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATA---VNGELVHK-EARAQFVLHEGDRIEIL 59 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEE---ECCEEcCH-HHcCccccCCCCEEEEE
Confidence 46678888887 3 46899988766 6666444443 67776653 35777889999999766
No 240
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=80.83 E-value=9.1 Score=36.11 Aligned_cols=109 Identities=24% Similarity=0.276 Sum_probs=61.4
Q ss_pred ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE---EEecC-CceeecccccCcceeeec
Q psy11202 159 GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAF---YVDYS-AMISVHLPKYGVVEVKPL 233 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~---vl~~~-~~~~~~~~~~g~~~~KdL 233 (360)
..+..|.|..+|++.|.+ +-=+.||||+-..-++.+|++-+... ++-++.. .+|.+ .+.....+ .=+.+.|+-
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~-~Nv~VvSN~M~Fd~~g~l~gF~~~-lIH~~NKn~ 164 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFH-PNVKVVSNFMDFDEDGVLVGFKGP-LIHTFNKNE 164 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--B-TTEEEEEE-EEE-TTSBEEEE-SS----TT-HHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCC-CCeEEEeeeEEECCcceEeecCCC-ceEEeeCCc
Confidence 568899999999999998 78999999999999999999986643 3333322 12221 22211111 001244554
Q ss_pred hhh-----cccCCCCCCCCcEEEEeCCchhhccC-----CCCeeEecccc
Q psy11202 234 GVI-----WGKFPSLYNPTNTIMFDDIRRNFLMN-----PRNGLRIRPFR 273 (360)
Q Consensus 234 ~~l-----~~~~~~~~~~~ntIivDD~~~~~~~~-----p~Ngi~I~~f~ 273 (360)
..+ |..+. .-+|+|++=|+..-..|. .+|.|+| .|-
T Consensus 165 ~~l~~~~~~~~~~---~R~NvlLlGDslgD~~Ma~G~~~~~~~lkI-GFL 210 (246)
T PF05822_consen 165 SALEDSPYFKQLK---KRTNVLLLGDSLGDLHMADGVPDEENVLKI-GFL 210 (246)
T ss_dssp HHHTTHHHHHCTT---T--EEEEEESSSGGGGTTTT-S--SEEEEE-EEE
T ss_pred ccccCchHHHHhc---cCCcEEEecCccCChHhhcCCCccccEEEE-Eec
Confidence 444 33332 238999999998877665 3555655 553
No 241
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=80.83 E-value=4.3 Score=30.67 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=33.4
Q ss_pred EEEEEEECCeEEEEEeC-CCCCHHHHHHHHHHHhCCCc
Q psy11202 5 LNLIIKWNSKEYKTSLS-KSNTVLELKQEILKQTGVNP 41 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~-~~~Tv~~LK~~I~~~tgVp~ 41 (360)
++|++.++|....+.++ .+.|..+|+.+|.+..+.+.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~ 38 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA 38 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 36888999999999988 89999999999999999876
No 242
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=79.53 E-value=3.7 Score=43.28 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEec
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDY 214 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~ 214 (360)
.+...++++.|++++..- ......||++.+++++|.+ +++++|-|+....+++.+++.+|+. + + .
T Consensus 383 ~g~~~~~~~~~~~~~g~~----~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~------~-~--~- 448 (562)
T TIGR01511 383 QGSTSVLVAVNGELAGVF----ALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN------V-R--A- 448 (562)
T ss_pred CCCEEEEEEECCEEEEEE----EecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc------E-E--c-
Confidence 355667788888887542 2345689999999999987 8999999999999999999999873 1 1 1
Q ss_pred CCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 215 SAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 215 ~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
.+. +..+...+|.+.. ..++|++|-|...-..+-...++.|
T Consensus 449 -~~~----p~~K~~~v~~l~~---------~~~~v~~VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 449 -EVL----PDDKAALIKELQE---------KGRVVAMVGDGINDAPALAQADVGI 489 (562)
T ss_pred -cCC----hHHHHHHHHHHHH---------cCCEEEEEeCCCccHHHHhhCCEEE
Confidence 010 1111112232221 2278999999876665555566654
No 243
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=78.38 E-value=1.1 Score=42.87 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCceEEeecccceeecC
Q psy11202 137 GKKLLVLDIDYTLFDHR 153 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~ 153 (360)
..+++||||||||+++.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 45799999999999987
No 244
>PLN02382 probable sucrose-phosphatase
Probab=78.05 E-value=5 Score=40.67 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHH---HHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEF---LTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eF---L~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
.+.+|+.||||||+++.... +..+.+| +..+++ +--+++-|.-+..-+..+++.+.+.
T Consensus 8 ~~~lI~sDLDGTLL~~~~~~-------~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~ 69 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDPE-------NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL 69 (413)
T ss_pred CCEEEEEcCCCcCcCCCCcc-------chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC
Confidence 47888999999999763211 2233333 345555 4555655655656667777777544
No 245
>KOG1615|consensus
Probab=77.60 E-value=5.2 Score=36.50 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=38.0
Q ss_pred eecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 161 ELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 161 ~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
...-||+.||...|.+ +..+++-|-+=...+++|.++||+..
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 4457899999999987 99999999999999999999998854
No 246
>KOG4583|consensus
Probab=77.46 E-value=1.4 Score=42.98 Aligned_cols=60 Identities=30% Similarity=0.268 Sum_probs=46.9
Q ss_pred ceEEEEEEECCeEEE-EE--eCCCCCHHHHHHHHHHHhC--CCccCeeeeccccCCCCCCCccccccc
Q psy11202 3 DSLNLIIKWNSKEYK-TS--LSKSNTVLELKQEILKQTG--VNPERQKLLNLKHAGKIPSDDTKLADT 65 (360)
Q Consensus 3 ~~i~i~vk~~g~~~~-i~--v~~~~Tv~~LK~~I~~~tg--Vp~~rQKLlgl~~kgk~l~D~~~L~~~ 65 (360)
..+++.||...++|. ++ .+..=||++||..++...- =.+..|||+ |.||++.|...|.+.
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrli---Ysgkllld~qcl~d~ 72 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLI---YSGKLLLDHQCLTDW 72 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHH---hhccccccchhHHHH
Confidence 348888998888875 44 5556799999999998763 234579999 999999998777766
No 247
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=77.04 E-value=9 Score=28.76 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCC----CccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 14 KEYKTSLSKSNTVLELKQEILKQTGV----NPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 14 ~~~~i~v~~~~Tv~~LK~~I~~~tgV----p~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
....++++...||.+|.+.|....+- ....-.+. .+|+.... +..|++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~---vNg~~v~~-----~~~l~~gD~v~i~ 74 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIA---VNGEYVRL-----DTPLKDGDEVAII 74 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEE---ECCeEcCC-----CcccCCCCEEEEe
Confidence 34667888889999999999987642 11222233 57776652 3468999999876
No 248
>KOG4250|consensus
Probab=76.70 E-value=20 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=36.7
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCC
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKI 55 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~ 55 (360)
-....+.+-++++.|+..|++.|+..||||.+.|-|+ +.|..
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL---~e~~~ 363 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELL---FEGGL 363 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceee---eecCc
Confidence 3555677889999999999999999999999999999 77654
No 249
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=75.90 E-value=16 Score=37.55 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=57.0
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCC----CccCe-eeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGV----NPERQ-KLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgV----p~~rQ-KLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.+++|....+..++-++.+.+|.+|--.|-...|= +.... .-+ -+..|.+++.+.+|.+.|+.+|+.+++--
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L-~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWAL-ARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEE-ecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 57888888888999999999999999999998863 11111 112 12477889999999999999999999874
No 250
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=73.37 E-value=5.7 Score=44.06 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=42.2
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc--CCeEEEEcCCcHHHHHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK--NYDIAIWSATGMKWIEEKM 195 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivIwTas~~~ya~~il 195 (360)
.+++|+||+||||+..... ....-|.+.+-|+.|.. +..++|-|.-+..-++..+
T Consensus 595 ~~rlI~LDyDGTLlp~~~~----~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f 651 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI----DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWF 651 (854)
T ss_pred cCeEEEEecCCcccCCccc----cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHh
Confidence 6789999999999965421 22234688999999853 7889999998888877665
No 251
>KOG2982|consensus
Probab=72.84 E-value=5.6 Score=38.84 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=45.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCC-----CCccccccccCCCCCEEEE
Q psy11202 18 TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIP-----SDDTKLADTNATDGFKLMV 75 (360)
Q Consensus 18 i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l-----~D~~~L~~~~l~~g~~i~l 75 (360)
..++-.-||.||+..+..+.||.+.|+||.-++-.|+.- .-++.|-.++|.+|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 334555699999999999999999999998555455532 2246788889999998865
No 252
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=72.45 E-value=6.1 Score=39.14 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=37.2
Q ss_pred ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 159 GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L 198 (360)
-++.+=|++.++|+.+.+ ++.++|-|++...|++.+|+.+
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 467779999999999987 7999999999999999999997
No 253
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=71.74 E-value=15 Score=29.11 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=35.6
Q ss_pred EEEEEEECCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 5 LNLIIKWNSKEYKTSLSK-----SNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~-----~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
+.|+|+++|...-+.++. +.+..+|+++|.+..++++...=.+
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l 48 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL 48 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE
Confidence 368899999988888774 6899999999999999988655544
No 254
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=71.66 E-value=15 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCC--CCC-CccccccccCCCCCEEEE
Q psy11202 15 EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGK--IPS-DDTKLADTNATDGFKLMV 75 (360)
Q Consensus 15 ~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk--~l~-D~~~L~~~~l~~g~~i~l 75 (360)
.++..++..+||..+...+.+++.| ++.-+|=.....+. .|. .+.++.++||.+|..|+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 4566788899999999999999999 55567642111121 233 346899999999987754
No 255
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=70.79 E-value=16 Score=26.53 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|+.+|+.++ ++...||.+|=.. .|+++++-.+- +.|.+..-. .+.+.-|++|++|-++
T Consensus 2 ~i~vNG~~~~--~~~~~tl~~lL~~----l~~~~~~vav~---vNg~iv~r~-~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 2 NIQLNGEPRE--LPDGESVAALLAR----EGLAGRRVAVE---VNGEIVPRS-QHASTALREGDVVEIV 60 (66)
T ss_pred EEEECCeEEE--cCCCCCHHHHHHh----cCCCCCeEEEE---ECCeEeCHH-HcCcccCCCCCEEEEE
Confidence 5777888664 4566788877544 47888777666 677666543 4666678999998665
No 256
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.59 E-value=7.9 Score=42.69 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCceEEeecccceeecCCCc-ccceeecCccHHHHHHHHhc--CCeEEEEcCCcHHHHHHHHH
Q psy11202 137 GKKLLVLDIDYTLFDHRSAA-EQGYELMRPYLHEFLTSAYK--NYDIAIWSATGMKWIEEKMK 196 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~-~~~~~~~RP~l~eFL~~l~~--~yeivIwTas~~~ya~~il~ 196 (360)
++.+|+||.||||+...... ....+..-|.+.+-|..|.. .-.|+|-|.-+..-++..+.
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 56899999999999654322 22345567899999999986 58899999999888887664
No 257
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=70.21 E-value=13 Score=27.06 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=37.7
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
-+|+.+++ +...||.+|.+.+ +++++.--+. +.|..+..+ .+.+.-|++|+.|-++
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~---vN~~iv~~~-~~~~~~L~~gD~veii 58 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVA---VNGEIVPRS-EWDDTILKEGDRIEIV 58 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEE---ECCEEcCHH-HcCceecCCCCEEEEE
Confidence 45665554 5677999887765 5666555444 677765433 4666779999998765
No 258
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=69.57 E-value=12 Score=27.30 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=40.3
Q ss_pred EEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 9 IKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 9 vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+.-+|+.+++ +...||.+|.+++ +++++.-.+. +.|.....+ .+++.-|++|++|-++
T Consensus 2 i~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~---vNg~~v~~~-~~~~~~L~~gD~V~ii 59 (65)
T cd00565 2 ITVNGEPREV--EEGATLAELLEEL----GLDPRGVAVA---LNGEIVPRS-EWASTPLQDGDRIEIV 59 (65)
T ss_pred EEECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEE---ECCEEcCHH-HcCceecCCCCEEEEE
Confidence 3445665554 5677999988776 4666666555 688776543 5667789999999766
No 259
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=69.49 E-value=5.6 Score=36.64 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=31.8
Q ss_pred EeecccceeecCCCcccceeecCccHHHHHHHHhcCCe--EEEEcCCcHHHHHH
Q psy11202 142 VLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYD--IAIWSATGMKWIEE 193 (360)
Q Consensus 142 VLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~ye--ivIwTas~~~ya~~ 193 (360)
.||.||||...... +.....-|.+.+.|+.|+.... |+|-|.-+....+.
T Consensus 1 ~lDyDGTL~p~~~~--p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD--PDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp EEE-TTTSS---S---GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CcccCCccCCCCCC--ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 48999999977653 3556778999999999998666 89999888877443
No 260
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=69.04 E-value=6.8 Score=34.10 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=33.4
Q ss_pred ccHHHHHHHHh-cCCeEEEEcCCcHHHHHHHHHHhCCCC
Q psy11202 165 PYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLLGVTV 202 (360)
Q Consensus 165 P~l~eFL~~l~-~~yeivIwTas~~~ya~~il~~L~~~~ 202 (360)
|.+.+||+.+. .+++++|-|++...+++++++.+|+..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 55569999985 499999999999999999999997754
No 261
>KOG0012|consensus
Probab=68.60 E-value=10 Score=37.55 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=61.4
Q ss_pred eEEEEEEEC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCc--cccccccCCCCCEEEEEccCc
Q psy11202 4 SLNLIIKWN-SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD--TKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 4 ~i~i~vk~~-g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~--~~L~~~~l~~g~~i~l~gs~~ 80 (360)
.++|++.-+ -+.+++++..+-.+..|+..++..+|++..---|+ |.+..+.+. ..+.++|++.|+.+++=+...
T Consensus 2 ~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li---~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 2 SLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLI---YNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred eEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcc---cCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 355555544 44577899999999999999999999999988888 888776654 678999999999999877666
Q ss_pred ch
Q psy11202 81 QS 82 (360)
Q Consensus 81 ~~ 82 (360)
..
T Consensus 79 d~ 80 (380)
T KOG0012|consen 79 DP 80 (380)
T ss_pred CC
Confidence 54
No 262
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=67.49 E-value=14 Score=28.81 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=34.3
Q ss_pred EEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccC
Q psy11202 6 NLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPER 43 (360)
Q Consensus 6 ~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~r 43 (360)
+++|+++|..-.+.++..-|-+.|+++|..+.++|+..
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~ 39 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK 39 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH
Confidence 57899999998888888889999999999999999875
No 263
>KOG2134|consensus
Probab=67.23 E-value=8.3 Score=38.62 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=40.0
Q ss_pred cCCCCCCCCceEEeecccceeecCCCcc-----cceeecCccHHHHHHHHhc-CCeEEEEcCCc
Q psy11202 130 ILNEPRPGKKLLVLDIDYTLFDHRSAAE-----QGYELMRPYLHEFLTSAYK-NYDIAIWSATG 187 (360)
Q Consensus 130 i~~~~~~~kk~LVLDLD~TLv~~~~~~~-----~~~~~~RP~l~eFL~~l~~-~yeivIwTas~ 187 (360)
-.+--..+.|.+.||||||||+..+..+ .-+-..=|.+..=|+.+++ +|-++|+|...
T Consensus 67 ~~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 67 TLPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred eccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 3334455889999999999999877422 1233334445556777776 99999999654
No 264
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=66.11 E-value=8.1 Score=40.21 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.4
Q ss_pred eEEEEcCCcHHHHHHHHHH-hCCC
Q psy11202 179 DIAIWSATGMKWIEEKMKL-LGVT 201 (360)
Q Consensus 179 eivIwTas~~~ya~~il~~-L~~~ 201 (360)
+.+|-||+...|+++++++ ||+.
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999976 6653
No 265
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=65.51 E-value=25 Score=25.76 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.3
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|.-+|+.+++. +..|+.+|=.. .++++..-.+- +.+.++..+ .++.. |++|++|-++
T Consensus 2 ~i~vNG~~~~~~--~~~tl~~ll~~----l~~~~~~vav~---~N~~iv~r~-~~~~~-L~~gD~ieIv 59 (65)
T PRK05863 2 IVVVNEEQVEVD--EQTTVAALLDS----LGFPEKGIAVA---VDWSVLPRS-DWATK-LRDGARLEVV 59 (65)
T ss_pred EEEECCEEEEcC--CCCcHHHHHHH----cCCCCCcEEEE---ECCcCcChh-Hhhhh-cCCCCEEEEE
Confidence 455678866654 56788776443 47888777776 788766544 45665 9999999765
No 266
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=65.02 E-value=12 Score=41.80 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCceEEeecccceeecCCCccc-------ceeecCccHHHHHHHHhc--CCeEEEEcCCcHHHHHHHHHHh
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQ-------GYELMRPYLHEFLTSAYK--NYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~-------~~~~~RP~l~eFL~~l~~--~yeivIwTas~~~ya~~il~~L 198 (360)
++.+|+||.||||+........ ..+..-|.+.+.|+.|.. ...|+|-|--+..-++..+..+
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 5689999999999976443221 123344778899999986 5889999999999988877543
No 267
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=64.41 E-value=9.6 Score=33.63 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=44.5
Q ss_pred EEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCC
Q psy11202 141 LVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGV 200 (360)
Q Consensus 141 LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~ 200 (360)
+++..+.+++.. .......||++.++|++|.+ ++.++|-|..+...+..+.+.+|+
T Consensus 110 ~~~~~~~~~~~~----~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 110 IVLAVNLIFLGL----FGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp EEEEESHEEEEE----EEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred cceeecCeEEEE----EeecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccc
Confidence 333335555533 12345679999999999998 699999999999999999999988
No 268
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=63.58 E-value=14 Score=38.86 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=71.4
Q ss_pred CCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-C-CeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEe
Q psy11202 136 PGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-N-YDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVD 213 (360)
Q Consensus 136 ~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~-yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~ 213 (360)
.+...+.+..|++++-.- ......||++.+.|++|.+ + +.++|-|.....+++.+++++|+... | .
T Consensus 362 ~g~~~~~v~~~~~~~g~i----~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~------f--~ 429 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVI----ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEV------H--A 429 (556)
T ss_pred CCcEEEEEEECCEEEEEE----EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCee------e--c
Confidence 355667777788776432 1345689999999999987 7 99999999999999999999988421 1 1
Q ss_pred cCCceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 214 YSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 214 ~~~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
+ +. +..+...++.+.. .+++|++|-|...-..+-...++-|
T Consensus 430 ~--~~----p~~K~~~v~~l~~---------~~~~v~~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 430 E--LL----PEDKLAIVKELQE---------EGGVVAMVGDGINDAPALAAADVGI 470 (556)
T ss_pred c--CC----HHHHHHHHHHHHH---------cCCEEEEEECChhHHHHHhhCCEeE
Confidence 1 10 1101112222221 1268999999887766665666644
No 269
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=63.24 E-value=29 Score=27.14 Aligned_cols=62 Identities=8% Similarity=0.113 Sum_probs=43.4
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+.++|.-+|+.+.++ ...||.+|=.. .++++..--+- +.|.++.- ..+++.-|++|++|-++
T Consensus 17 ~~m~I~VNG~~~~~~--~~~tl~~LL~~----l~~~~~~vAVe---vNg~iVpr-~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 17 VLITISINDQSIQVD--ISSSLAQIIAQ----LSLPELGCVFA---INNQVVPR-SEWQSTVLSSGDAISLF 78 (84)
T ss_pred ceEEEEECCeEEEcC--CCCcHHHHHHH----cCCCCceEEEE---ECCEEeCH-HHcCcccCCCCCEEEEE
Confidence 456777789877764 56688877554 36776554443 67877654 36888889999999765
No 270
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=61.64 E-value=14 Score=32.51 Aligned_cols=63 Identities=27% Similarity=0.298 Sum_probs=45.0
Q ss_pred CCceEEeecccceeecCC----Cccc-ceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRS----AAEQ-GYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~----~~~~-~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
+-++|++|.||||.+..- ..+. ..+..|-|.- ++.+.+ .-+++|-|.-...-++.-++.||+.
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~ 75 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK 75 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc
Confidence 568999999999997542 1111 2344455542 333333 8999999999999999999999874
No 271
>PRK07440 hypothetical protein; Provisional
Probab=61.46 E-value=37 Score=25.36 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=42.2
Q ss_pred CCceEEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 1 MGDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 1 m~~~i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|+. .++|+-+|+.+. ++...||.+|-. ..+++++.--+- +.|.++.-+ .+.+.-|++|++|-++
T Consensus 1 ~~~--~m~i~vNG~~~~--~~~~~tl~~lL~----~l~~~~~~vav~---~N~~iv~r~-~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 1 MSN--PITLQVNGETRT--CSSGTSLPDLLQ----QLGFNPRLVAVE---YNGEILHRQ-FWEQTQVQPGDRLEIV 64 (70)
T ss_pred CCC--ceEEEECCEEEE--cCCCCCHHHHHH----HcCCCCCeEEEE---ECCEEeCHH-HcCceecCCCCEEEEE
Confidence 554 356666888644 556788887754 346666544443 677766533 5777889999998665
No 272
>PRK01777 hypothetical protein; Validated
Probab=59.56 E-value=55 Score=26.20 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCceEEEEEEEC--CeE--EEEEeCCCCCHHHHHHHHHHHhCCCccCe------eeeccccCCCCCCCccccccccCCCC
Q psy11202 1 MGDSLNLIIKWN--SKE--YKTSLSKSNTVLELKQEILKQTGVNPERQ------KLLNLKHAGKIPSDDTKLADTNATDG 70 (360)
Q Consensus 1 m~~~i~i~vk~~--g~~--~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQ------KLlgl~~kgk~l~D~~~L~~~~l~~g 70 (360)
|. +|+|.|-+. .+. ..+++++.+||.+.=.++ |++.+.- ..+| ..|+...-+ ..|++|
T Consensus 1 ~~-~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vg--I~Gk~v~~d-----~~L~dG 68 (95)
T PRK01777 1 MG-KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVG--IYSRPAKLT-----DVLRDG 68 (95)
T ss_pred CC-eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEE--EeCeECCCC-----CcCCCC
Confidence 54 788888873 222 457899999999865444 6655521 2333 577665433 257899
Q ss_pred CEEEEEcc
Q psy11202 71 FKLMVMGS 78 (360)
Q Consensus 71 ~~i~l~gs 78 (360)
+.|-+.-.
T Consensus 69 DRVeIyrP 76 (95)
T PRK01777 69 DRVEIYRP 76 (95)
T ss_pred CEEEEecC
Confidence 99976643
No 273
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=59.53 E-value=26 Score=26.67 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=38.7
Q ss_pred EEEEEEE--------CCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-Ce--eeeccccCCCCCCCccccccccCCCCCEE
Q psy11202 5 LNLIIKW--------NSKEYKTSLSKSNTVLELKQEILKQTGVNPE-RQ--KLLNLKHAGKIPSDDTKLADTNATDGFKL 73 (360)
Q Consensus 5 i~i~vk~--------~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~-rQ--KLlgl~~kgk~l~D~~~L~~~~l~~g~~i 73 (360)
|+|+|++ +....+++++...||.+|.+.|.....-..+ +. .+. .+|....+ +.-|++|+.|
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~va---vN~~~v~~-----~~~l~dgDeV 73 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLA---LNEEYTTE-----SAALKDGDEL 73 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEE---ECCEEcCC-----CcCcCCCCEE
Confidence 4566664 1244668888889999999999766411011 11 122 45655432 2357889998
Q ss_pred EEE
Q psy11202 74 MVM 76 (360)
Q Consensus 74 ~l~ 76 (360)
-++
T Consensus 74 ai~ 76 (82)
T PLN02799 74 AII 76 (82)
T ss_pred EEe
Confidence 776
No 274
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=58.91 E-value=21 Score=28.78 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=46.9
Q ss_pred EEEEEECCeEE-EEEeCCCCCHHHHHHHHHHHhCCCccC-eeeeccccCC--CCCCCc--------cccccccCCCCCEE
Q psy11202 6 NLIIKWNSKEY-KTSLSKSNTVLELKQEILKQTGVNPER-QKLLNLKHAG--KIPSDD--------TKLADTNATDGFKL 73 (360)
Q Consensus 6 ~i~vk~~g~~~-~i~v~~~~Tv~~LK~~I~~~tgVp~~r-QKLlgl~~kg--k~l~D~--------~~L~~~~l~~g~~i 73 (360)
-|+|=....+| ++..+.++||.++-.++..++.+++.. -+|. ++..| ++|... ..|...|-++.+.|
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~-l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l 82 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS-LKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRI 82 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE-EEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcH
Confidence 45565666666 488999999999999999999988743 3333 33222 233322 23555676777766
Q ss_pred EEEcc
Q psy11202 74 MVMGS 78 (360)
Q Consensus 74 ~l~gs 78 (360)
-.||-
T Consensus 83 ~~lGr 87 (97)
T cd01775 83 EDIGR 87 (97)
T ss_pred HHhCc
Confidence 66663
No 275
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=57.42 E-value=48 Score=25.46 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=34.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhC-----CCcc------CeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 14 KEYKTSLSKSNTVLELKQEILKQTG-----VNPE------RQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 14 ~~~~i~v~~~~Tv~~LK~~I~~~tg-----Vp~~------rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
....|+++ ..||.+|.+.|.+..+ +-.+ .-.++ .+|.....+.. ..|++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~---vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIIL---VNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEE---ECCEecCccCC---CCCCCCCEEEEe
Confidence 34667776 8999999999988863 1111 12222 45554433321 467889988876
No 276
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=55.61 E-value=38 Score=25.00 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=40.0
Q ss_pred EEEECCeEEEEEeCCC-CCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKS-NTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~-~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|+-+|+.+++. .. .||.+|=+ ..++++++--+- +.|.++.-+ .+++.-|++|++|-++
T Consensus 2 ~I~vNG~~~~~~--~~~~tv~~lL~----~l~~~~~~vav~---vN~~iv~r~-~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 2 NLKINGNQIEVP--ESVKTVAELLT----HLELDNKIVVVE---RNKDILQKD-DHTDTSVFDGDQIEIV 61 (67)
T ss_pred EEEECCEEEEcC--CCcccHHHHHH----HcCCCCCeEEEE---ECCEEeCHH-HcCceecCCCCEEEEE
Confidence 466688877554 43 57877654 456776655444 677776544 6888889999998655
No 277
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=55.44 E-value=52 Score=24.64 Aligned_cols=60 Identities=32% Similarity=0.461 Sum_probs=40.2
Q ss_pred EEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 7 LIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 7 i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+++..+|+.. +++...|++||=+ ..|++++.--.. +.|.++..+ .+.+.-+++|+.|-++
T Consensus 3 m~i~~ng~~~--e~~~~~tv~dLL~----~l~~~~~~vav~---vNg~iVpr~-~~~~~~l~~gD~ievv 62 (68)
T COG2104 3 MTIQLNGKEV--EIAEGTTVADLLA----QLGLNPEGVAVA---VNGEIVPRS-QWADTILKEGDRIEVV 62 (68)
T ss_pred EEEEECCEEE--EcCCCCcHHHHHH----HhCCCCceEEEE---ECCEEccch-hhhhccccCCCEEEEE
Confidence 4555557754 4555589998744 456777665555 688776644 5677788999988665
No 278
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=54.83 E-value=35 Score=26.71 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=33.0
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNP 41 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~ 41 (360)
|++++.++|..+...++++.|..+|.+++.+..+.+.
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~ 37 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN 37 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC
Confidence 4688889999999999999999999999999997643
No 279
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=54.49 E-value=50 Score=24.16 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=37.9
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|.-+|+.+++ +...||.+|-+.+ ++++..-.+- +.+.++..+ .+++.-|++|++|-++
T Consensus 2 ~i~vNg~~~~~--~~~~tl~~ll~~l----~~~~~~vaVa---vN~~iv~r~-~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 2 QILFNDQPMQC--AAGQTVHELLEQL----NQLQPGAALA---INQQIIPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEE---ECCEEeChH-HcCccccCCCCEEEEE
Confidence 45567887766 4567899887654 4444333322 566665433 4677779999999766
No 280
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=53.96 E-value=55 Score=24.73 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=35.3
Q ss_pred EEEEeCCC-CCHHHHHHHHHHHhC-CCccCe--eeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 16 YKTSLSKS-NTVLELKQEILKQTG-VNPERQ--KLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 16 ~~i~v~~~-~Tv~~LK~~I~~~tg-Vp~~rQ--KLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
..++++.+ +||.+|.+.|.+..+ .-..+. .+. .+|+...+ +..|++|+.|-++
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~---vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVA---VNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEE---ECCEEcCC-----CcCcCCCCEEEEe
Confidence 46788877 899999999988863 111111 222 46665553 3568899999876
No 281
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=53.79 E-value=52 Score=23.86 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=37.5
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
.|+.+|+.+. +..+.|+.+||.++..... -++ +.|=+.+++ +-|++|+.|.++
T Consensus 2 ~I~vN~k~~~--~~~~~tl~~lr~~~k~~~D------I~I---~NGF~~~~d-----~~L~e~D~v~~I 54 (57)
T PF14453_consen 2 KIKVNEKEIE--TEENTTLFELRKESKPDAD------IVI---LNGFPTKED-----IELKEGDEVFLI 54 (57)
T ss_pred EEEECCEEEE--cCCCcCHHHHHHhhCCCCC------EEE---EcCcccCCc-----cccCCCCEEEEE
Confidence 4566777544 5566799999999876543 345 688766665 357889999887
No 282
>KOG4549|consensus
Probab=53.73 E-value=60 Score=27.67 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCceEEeecccceeecCC---------------CcccceeecCccHHHHHHHHhc-CCeEEEEcCC-cHHHHHHHHHHhC
Q psy11202 137 GKKLLVLDIDYTLFDHRS---------------AAEQGYELMRPYLHEFLTSAYK-NYDIAIWSAT-GMKWIEEKMKLLG 199 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~---------------~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas-~~~ya~~il~~L~ 199 (360)
...+.++|||+||+.+-- .........=|-...-|..|.+ ..++++-|.+ .+.+|...|+.+.
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fk 83 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFK 83 (144)
T ss_pred CCceeEEeccceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhc
Confidence 456788999999885421 0123455667788889999997 8999888866 5689999999984
Q ss_pred C
Q psy11202 200 V 200 (360)
Q Consensus 200 ~ 200 (360)
+
T Consensus 84 v 84 (144)
T KOG4549|consen 84 V 84 (144)
T ss_pred c
Confidence 4
No 283
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=53.15 E-value=29 Score=27.85 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeec
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLN 48 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlg 48 (360)
..+|.+.|++++|=.++|+.+++++||-+..-..|.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~ 56 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLN 56 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 367999999999999999999999999999888764
No 284
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=52.54 E-value=65 Score=23.14 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=36.5
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|..+|+.++ ++...|+.+|-+.+ ++++. -.+. +.|.....+ .+.+.-|++|+.|-++
T Consensus 2 ~i~vNg~~~~--~~~~~tl~~ll~~l----~~~~~-~~v~---vN~~~v~~~-~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 2 DIQLNQQTLS--LPDGATVADALAAY----GARPP-FAVA---VNGDFVART-QHAARALAAGDRLDLV 59 (65)
T ss_pred EEEECCEEEE--CCCCCcHHHHHHhh----CCCCC-eEEE---ECCEEcCch-hcccccCCCCCEEEEE
Confidence 4667788665 45678999888766 33322 2233 577665432 3555668999998765
No 285
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=49.84 E-value=40 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 15 EYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 15 ~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
++.|.+++..+.++|...|+++...++++-+|-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LS 40 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLS 40 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEE
Confidence 344678999999999999999999999999887
No 286
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=49.63 E-value=32 Score=27.07 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=31.4
Q ss_pred EEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccC
Q psy11202 7 LIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPER 43 (360)
Q Consensus 7 i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~r 43 (360)
+++| -+|..+-+.+.++..+.+|++.|.+..|+....
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~ 40 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFE 40 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc
Confidence 3444 378889999999999999999999999988753
No 287
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=48.03 E-value=25 Score=27.81 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCC
Q psy11202 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGK 54 (360)
Q Consensus 14 ~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk 54 (360)
.+|.+.|++++|=.++|+.|+...||++..-.-+. +.|+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~--~~gk 59 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMN--YPGK 59 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEE--ETSE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeE--eCCC
Confidence 57999999999999999999999999998887664 3554
No 288
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=47.10 E-value=37 Score=35.51 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=59.6
Q ss_pred eeecCccHHHHHHHHhc-CC-eEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecCCceeecccccCcceeeechhhc
Q psy11202 160 YELMRPYLHEFLTSAYK-NY-DIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIW 237 (360)
Q Consensus 160 ~~~~RP~l~eFL~~l~~-~y-eivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~~~~~~~~~~~g~~~~KdL~~l~ 237 (360)
....||++.+.|++|.+ ++ +++|-|+....+++.+++.+|+...+ . .+. +... .+-+..+-
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f-----~-----~~~----p~~K---~~~i~~l~ 422 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVH-----A-----ELL----PEDK---LEIVKELR 422 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhh-----h-----ccC----cHHH---HHHHHHHH
Confidence 44679999999999987 78 99999999999999999999884321 0 000 1101 11112221
Q ss_pred ccCCCCCCCCcEEEEeCCchhhccCCCCeeEec
Q psy11202 238 GKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIR 270 (360)
Q Consensus 238 ~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I~ 270 (360)
. ..++|++|-|...-..+-...++-|.
T Consensus 423 ~------~~~~v~~vGDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 423 E------KYGPVAMVGDGINDAPALAAADVGIA 449 (536)
T ss_pred h------cCCEEEEEeCCHHHHHHHHhCCEEEE
Confidence 1 22689999998777666556666443
No 289
>KOG4842|consensus
Probab=44.82 E-value=6.3 Score=37.19 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=50.5
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|.+..-|.|..+-++++.+.+|.|.+..+.+.++|.++.-|++ +++ .+++...+... +.+...+++.
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll---~~~-llk~iahl~~p-~mkEh~f~vt 70 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLL---ALN-LLKEIAHLVSP-LMKEHHFKVT 70 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHH---hhh-hhhhhhhhhhh-hhccccceeE
Confidence 5666678999999999999999999999999999999999998 554 44544444332 4444445444
No 290
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=44.67 E-value=34 Score=27.20 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeec
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLN 48 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlg 48 (360)
..+|.+.|+..+|=.++|+.|+...||++..-.-+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 467999999999999999999999999998877653
No 291
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=44.61 E-value=1.2e+02 Score=23.40 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=43.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccC
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~ 79 (360)
+..++=|-. .|+.+|+.+..+..+++.+--.|. |---|..+.|+.-+..+ .++..+|++...
T Consensus 12 r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lv-L~eDGT~VddEeyF~tL--p~nT~lm~L~~g 73 (78)
T PF02017_consen 12 RSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLV-LEEDGTEVDDEEYFQTL--PDNTVLMLLEKG 73 (78)
T ss_dssp SSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEE-ETTTTCBESSCHHHCCS--SSSEEEEEEESS
T ss_pred CCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEE-EeCCCcEEccHHHHhhC--CCCCEEEEECCC
Confidence 445555555 489999999999999997666654 32377777777666665 577777776543
No 292
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=44.60 E-value=65 Score=31.78 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=72.0
Q ss_pred CCceEEeecccceeecCCCc-----------ccceeecCccHHHHHHHHhcCC-eEEEEcCCcHHHHHHHHHHh-CCCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAA-----------EQGYELMRPYLHEFLTSAYKNY-DIAIWSATGMKWIEEKMKLL-GVTVN 203 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~-----------~~~~~~~RP~l~eFL~~l~~~y-eivIwTas~~~ya~~il~~L-~~~~~ 203 (360)
..-.||=|||.|..++.-.. ....-..=||+..|++.+.+.- --+.|=|+++-..-+.|+++ +-..-
T Consensus 160 a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~ 239 (373)
T COG4850 160 AGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNF 239 (373)
T ss_pred cceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCC
Confidence 56788999999999875421 1112344699999999999844 33555566665666666665 22112
Q ss_pred CCceEEEEEecCC-ceeecccccCc-ceeeechhhcccCCCCCCCCcEEEEeCCchh--------hccCCCC--eeEecc
Q psy11202 204 PNYKIAFYVDYSA-MISVHLPKYGV-VEVKPLGVIWGKFPSLYNPTNTIMFDDIRRN--------FLMNPRN--GLRIRP 271 (360)
Q Consensus 204 ~~~~i~~vl~~~~-~~~~~~~~~g~-~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~--------~~~~p~N--gi~I~~ 271 (360)
|...+.. .+.+. +-.. ...|. +..-.|.-+.+++|. .+.|+|-|+-.. +...|.. ||-|+.
T Consensus 240 P~GPl~L-~~~g~~~~~i--~~sga~rK~~~l~nil~~~p~----~kfvLVGDsGE~DpeIYae~v~~fP~RIl~I~IRd 312 (373)
T COG4850 240 PYGPLLL-RRWGGVLDNI--IESGAARKGQSLRNILRRYPD----RKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIRD 312 (373)
T ss_pred CCCchhH-hhcCCccccc--ccchhhhcccHHHHHHHhCCC----ceEEEecCCCCcCHHHHHHHHHhCccceeeEeeee
Confidence 2222211 11110 0000 00111 123345556667666 889999887542 2333443 466777
Q ss_pred cccC
Q psy11202 272 FREA 275 (360)
Q Consensus 272 f~~~ 275 (360)
..+.
T Consensus 313 vs~~ 316 (373)
T COG4850 313 VSGG 316 (373)
T ss_pred ccCc
Confidence 7653
No 293
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=44.54 E-value=41 Score=24.80 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCC--ccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 15 EYKTSLSKSNTVLELKQEILKQTGVN--PERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 15 ~~~i~v~~~~Tv~~LK~~I~~~tgVp--~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
.-.+.++...||.+|.++|.....-. ...-.+. ++|....+ ...+..|++|+.|.++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~---vN~~~v~~--~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVA---VNGEIVPD--DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEE---ETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEE---ECCEEcCC--ccCCcCcCCCCEEEEE
Confidence 45677888999999999998876321 1233333 57777666 3556678999999877
No 294
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=44.08 E-value=1.3e+02 Score=23.27 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLE 80 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~ 80 (360)
+..+|=|-. .|+.+|+.+..+..+++..--.|. |.--|..+.|+.-+..+ .++..+|+++..+
T Consensus 12 r~~k~GV~A---~sL~eL~~K~~~~l~l~~~~~~lv-L~eDGTeVddEeYF~tL--p~nT~l~~l~~gq 74 (78)
T cd01615 12 RSRKKGVAA---SSLEELLSKACEKLKLPSAPVTLV-LEEDGTEVDDEEYFQTL--PDNTVLMLLEPGQ 74 (78)
T ss_pred CCeeEEEEc---CCHHHHHHHHHHHcCCCCCCeEEE-EeCCCcEEccHHHHhcC--CCCcEEEEECCCC
Confidence 444455544 389999999999999985444443 43477777777666665 5778888776443
No 295
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=43.67 E-value=1.4e+02 Score=26.10 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecC
Q psy11202 165 PYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYS 215 (360)
Q Consensus 165 P~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~ 215 (360)
--+.+||..+.. +-.|++|-|+.... ..|..+|+... .+.|+.|.+
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~---~I~~vvD~n 101 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDND---LIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TT---TS--EEES-
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCcc---eeEEEEeCC
Confidence 346688888876 77799999997755 55777776443 255666643
No 296
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=42.58 E-value=70 Score=25.50 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=53.1
Q ss_pred EEEEEE-ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEE
Q psy11202 5 LNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73 (360)
Q Consensus 5 i~i~vk-~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i 73 (360)
|+++|. -.|...-+.+-.+.|..-|-...+...|=..+.-++| |.|+-+.-+.+-.++++.+|+.|
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL---~dG~rI~~dqTP~dldmEdnd~i 91 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFL---FDGKRIDLDQTPGDLDMEDNDEI 91 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEE---EcceecCCCCChhhcCCccchHH
Confidence 566666 3455566778788899999999999999999999999 99987777777888888777654
No 297
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.08 E-value=40 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
..+|.+.|++.+|=.++|+.|+.++||.+..-.-+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 36799999999999999999999999999888766
No 298
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.91 E-value=23 Score=32.51 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=23.5
Q ss_pred EEEEEEECC------eEEEEEeCCCCCHHHHHHHHHHHhCCCcc-Ceeee
Q psy11202 5 LNLIIKWNS------KEYKTSLSKSNTVLELKQEILKQTGVNPE-RQKLL 47 (360)
Q Consensus 5 i~i~vk~~g------~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~-rQKLl 47 (360)
-.|+|.|-+ +.|.+-|+.+.||.||-..+....+++.+ .++|.
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lr 68 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLR 68 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEE
Confidence 356666632 23778899999999999999999999766 45554
No 299
>CHL00030 rpl23 ribosomal protein L23
Probab=40.86 E-value=60 Score=25.92 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeec
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLN 48 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlg 48 (360)
..+|.+.|+.++|=.++|+.|+.+.||.+..-.-+.
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 467999999999999999999999999988877664
No 300
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.50 E-value=58 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 14 ~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
++|.+.|+..+|=.++|+.|+.++||.+..-.-+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999999888766
No 301
>KOG2689|consensus
Probab=39.92 E-value=70 Score=30.64 Aligned_cols=70 Identities=10% Similarity=0.120 Sum_probs=53.6
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCc---cccccccCCCCCEEEE
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD---TKLADTNATDGFKLMV 75 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~---~~L~~~~l~~g~~i~l 75 (360)
-+|.|++ .|++...++++..|+.++...+..-+|+.++==.++-. |--+.+.++ .+|..|+|.|-+.++|
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~-fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTG-FPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecC-CCceecccccccccHHHhccccchheec
Confidence 5788998 89999999999999999999999999987754455410 333444432 6899999998877764
No 302
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=39.10 E-value=14 Score=31.99 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEeecccceeecC
Q psy11202 141 LVLDIDYTLFDHR 153 (360)
Q Consensus 141 LVLDLD~TLv~~~ 153 (360)
+++|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999875
No 303
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=38.94 E-value=99 Score=23.09 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=49.0
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhC---CCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTG---VNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tg---Vp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
-+|+...|+.+.++++--..++--+.+| -|++.=.|-. -.|.+++-+..+.++|+.+|.++.|--.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkD--e~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKD--ESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeec--cCCcEeeccchhhhccccccceEEEEee
Confidence 3677788888888887766666555554 5788766652 3677777788999999999999987643
No 304
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=38.69 E-value=43 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=35.7
Q ss_pred ceeecCccHHHHHHHHhcCCeEEEEcCCcHHHHHHHHHHh
Q psy11202 159 GYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 159 ~~~~~RP~l~eFL~~l~~~yeivIwTas~~~ya~~il~~L 198 (360)
..+..|--+++|+.++.+--..+||||-...=++++++..
T Consensus 164 LDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred ccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 4566788899999999999999999999999999999876
No 305
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=35.93 E-value=40 Score=28.30 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=34.7
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccc
Q psy11202 19 SLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADT 65 (360)
Q Consensus 19 ~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~ 65 (360)
-|+.+.||++|...|....+++|+.-=|. +++.++..+.+++++
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flf---Vnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLA---IEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEE---ECCccCCccchHHHH
Confidence 58999999999999999999999973223 566666666677766
No 306
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.84 E-value=20 Score=31.48 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.7
Q ss_pred ceEEeecccceeecC
Q psy11202 139 KLLVLDIDYTLFDHR 153 (360)
Q Consensus 139 k~LVLDLD~TLv~~~ 153 (360)
++++||.||||....
T Consensus 2 ~~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 2 DAICFDKTGTLTQGK 16 (215)
T ss_dssp SEEEEECCTTTBESH
T ss_pred eEEEEecCCCcccCe
Confidence 579999999998753
No 307
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.64 E-value=91 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=29.5
Q ss_pred EEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q psy11202 9 IKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPE 42 (360)
Q Consensus 9 vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~ 42 (360)
+.| +|.+--+.|+-+.|..+|+.++.+.++++..
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~ 51 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV 51 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc
Confidence 455 6777779999999999999999999998875
No 308
>KOG0007|consensus
Probab=34.63 E-value=17 Score=35.84 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=40.5
Q ss_pred EECCeEEEEEeC-CCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCcc
Q psy11202 10 KWNSKEYKTSLS-KSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDT 60 (360)
Q Consensus 10 k~~g~~~~i~v~-~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~ 60 (360)
...|....+.+. .+..+..||.++...++|+++.||+. +.|..++|..
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~---~~~~~l~d~~ 337 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLR---GEGAFLKDNR 337 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeec---cCCcccCccc
Confidence 345666677766 67889999999999999999999999 7888888873
No 309
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=34.51 E-value=1e+02 Score=23.91 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHhhhhccccCCCCCCCCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCCcH
Q psy11202 119 IDKRIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGM 188 (360)
Q Consensus 119 l~~ri~~y~i~i~~~~~~~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas~~ 188 (360)
+++-+.+-.-...-+.......|||+-|||.|+. ++|+..|-.+-.+++-+.+..
T Consensus 23 L~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~Vdd---------------EeyF~tLp~nT~l~~L~~gq~ 77 (80)
T cd06536 23 LEELRIKACESLGFDSSSAPITLVLAEDGTIVED---------------EDYFLCLPPNTKFVLLAENEK 77 (80)
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEecCCcEEcc---------------HHHHhhCCCCcEEEEECCCCc
No 310
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=34.01 E-value=35 Score=30.83 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=46.9
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHH------HHhcCCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEE
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLT------SAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYV 212 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~------~l~~~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl 212 (360)
-.+-||+|.|++-++..-..+.-+.-|+-+.||. .+.+.++=. |-.++||..+++-- ..+...|.|+-
T Consensus 64 i~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~---SIPKevA~qLI~MH---q~RGD~i~FvT 137 (237)
T COG3700 64 IAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEF---SIPKEVARQLIDMH---QRRGDAIYFVT 137 (237)
T ss_pred eeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccc---cchHHHHHHHHHHH---HhcCCeEEEEe
Confidence 3678999999998876555566677888888765 344433321 33677887776532 23445788876
Q ss_pred ecCC
Q psy11202 213 DYSA 216 (360)
Q Consensus 213 ~~~~ 216 (360)
.|..
T Consensus 138 GRt~ 141 (237)
T COG3700 138 GRTP 141 (237)
T ss_pred cCCC
Confidence 6654
No 311
>KOG2561|consensus
Probab=33.90 E-value=13 Score=37.86 Aligned_cols=69 Identities=26% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEEECCeEE---EEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 5 LNLIIKWNSKEY---KTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 5 i~i~vk~~g~~~---~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
++|.....++.- .++-+.+-|-.+|...|.+..||+-..-|.+ ..||++.-..+|.+-|++.+...|++
T Consensus 38 ~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci---~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 38 ESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCI---INGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred eeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhhee---eccceeecccchhhhhhhhhhHHHHH
Confidence 445544444432 2334456789999999999999999999999 89999999999999999988887754
No 312
>PRK10671 copA copper exporting ATPase; Provisional
Probab=33.74 E-value=85 Score=34.79 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=68.4
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEEecC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYS 215 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~~~~~~~i~~vl~~~ 215 (360)
+...+.+-.|++++-.- ...-..||+..+.|+.+.+ ++++++.|..+...++.+++.+|+.. + + ..
T Consensus 629 g~~~v~va~~~~~~g~~----~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-----~-~--~~- 695 (834)
T PRK10671 629 GATPVLLAVDGKAAALL----AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-----V-I--AG- 695 (834)
T ss_pred CCeEEEEEECCEEEEEE----EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-----E-E--eC-
Confidence 45555566677665321 1234569999999999977 89999999999999999999998742 1 1 10
Q ss_pred CceeecccccCcceeeechhhcccCCCCCCCCcEEEEeCCchhhccCCCCeeEe
Q psy11202 216 AMISVHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRI 269 (360)
Q Consensus 216 ~~~~~~~~~~g~~~~KdL~~l~~~~~~~~~~~ntIivDD~~~~~~~~p~Ngi~I 269 (360)
+. +..+...++.+. . ..+++++|-|...-..+-...|+-|
T Consensus 696 -~~----p~~K~~~i~~l~---~------~~~~v~~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 696 -VL----PDGKAEAIKRLQ---S------QGRQVAMVGDGINDAPALAQADVGI 735 (834)
T ss_pred -CC----HHHHHHHHHHHh---h------cCCEEEEEeCCHHHHHHHHhCCeeE
Confidence 10 111111223221 1 2368999999877666655666644
No 313
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.47 E-value=98 Score=30.49 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=42.7
Q ss_pred EEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 8 ~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+|+-+|+.+++ +...||.+|=.+ .+++++.-.+- ++|.++.-+ .+.+.-|++|++|-++
T Consensus 2 ~I~VNGk~~el--~e~~TL~dLL~~----L~i~~~~VAVe---VNgeIVpr~-~w~~t~LkeGD~IEII 60 (326)
T PRK11840 2 RIRLNGEPRQV--PAGLTIAALLAE----LGLAPKKVAVE---RNLEIVPRS-EYGQVALEEGDELEIV 60 (326)
T ss_pred EEEECCEEEec--CCCCcHHHHHHH----cCCCCCeEEEE---ECCEECCHH-HcCccccCCCCEEEEE
Confidence 46678886655 556788877554 48888877666 788877543 5778889999998655
No 314
>PRK08453 fliD flagellar capping protein; Validated
Probab=33.23 E-value=62 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=29.2
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHh
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQT 37 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~t 37 (360)
..|++.++|+.|.|+|+...|+.+|+..|-..+
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~ 161 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDAT 161 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCCC
Confidence 457778889999999999999999999999655
No 315
>KOG2961|consensus
Probab=33.03 E-value=60 Score=28.64 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSAT 186 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas 186 (360)
+-+.+|||=|+|+.--.+ ...+...+|+.++|= ..+-.-+|+|+|.+
T Consensus 42 ~ikavVlDKDNcit~P~~--~~Iwp~~l~~ie~~~-~vygek~i~v~SNs 88 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYS--LAIWPPLLPSIERCK-AVYGEKDIAVFSNS 88 (190)
T ss_pred CceEEEEcCCCeeeCCcc--cccCchhHHHHHHHH-HHhCcccEEEEecC
Confidence 778999999999985433 225666788887764 44555678888755
No 316
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.76 E-value=71 Score=24.73 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=23.2
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHhcCCeEEEEcCC
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSAT 186 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivIwTas 186 (360)
..+|||+=|||.|+.. +|+..|-.+-++++-+.+
T Consensus 40 ~~~lvL~eDGT~Vd~E---------------eyF~~LpdnT~lm~L~~g 73 (78)
T cd06539 40 LVTLVLEEDGTVVDTE---------------EFFQTLGDNTHFMVLEKG 73 (78)
T ss_pred CcEEEEeCCCCEEccH---------------HHHhhCCCCCEEEEECCC
Confidence 5789999999999763 455555555555554433
No 317
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=32.67 E-value=47 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=24.4
Q ss_pred EEEEEEECCeEEEEEeCCCCCHHHHHHHH
Q psy11202 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEI 33 (360)
Q Consensus 5 i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I 33 (360)
|+|++..+++.+.+++..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 56888889999999999998888887776
No 318
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=32.26 E-value=71 Score=23.77 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeecccc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKH 51 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~ 51 (360)
.|...++++++++|+.+|=++|.+..|+. ..-..||.+
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~--e~~~FgL~~ 42 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLK--EKEYFGLQY 42 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTS--SGGGEEEEE
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCC--CccEEEEEE
Confidence 46678899999999999999999999986 333556655
No 319
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=32.02 E-value=46 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPE 42 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~ 42 (360)
|-.|-+.|.+.+|+.++|++|++.+||+-.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 444777899999999999999999998753
No 320
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=31.69 E-value=57 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh
Q psy11202 16 YKTSLSKSNTVLELKQEILKQT 37 (360)
Q Consensus 16 ~~i~v~~~~Tv~~LK~~I~~~t 37 (360)
.+++++.++|+.++|+.+.+.-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4678999999999999999875
No 321
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.66 E-value=2.5e+02 Score=21.78 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEcc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGS 78 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs 78 (360)
+..++-|-. .|+.+|+.+..+..+++.+--.|. |---|..++|+.-+..+ .++..+|++..
T Consensus 12 r~~k~GV~A---~sL~EL~~K~~~~l~~~~~~~~lv-L~eDGT~Vd~EeyF~~L--pdnT~lm~L~~ 72 (78)
T cd06539 12 RSSRRGVMA---SSLQELISKTLDALVITSGLVTLV-LEEDGTVVDTEEFFQTL--GDNTHFMVLEK 72 (78)
T ss_pred CCceEEEEe---cCHHHHHHHHHHHhCCCCCCcEEE-EeCCCCEEccHHHHhhC--CCCCEEEEECC
Confidence 334444543 489999999999999986644443 32477777777666664 57888887753
No 322
>KOG2086|consensus
Probab=31.46 E-value=1.1e+02 Score=30.64 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=47.4
Q ss_pred EEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-CeeeeccccCCCCCCCc-cccccccCCCC
Q psy11202 5 LNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPE-RQKLLNLKHAGKIPSDD-TKLADTNATDG 70 (360)
Q Consensus 5 i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~-rQKLlgl~~kgk~l~D~-~~L~~~~l~~g 70 (360)
-+|.|+. +|+.....++-+-||.|++..|...-.-.+. -+-|+ ..|--|.+.|+ .||.+.||.+-
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~-~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILM-MAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeee-ecCCCcccCCcchhHHhccchhh
Confidence 4677776 4555667788899999999999988654444 45555 33666777665 68999998874
No 323
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=30.37 E-value=1.4e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=23.7
Q ss_pred ECCeE-EEEE-eCC-CCCHHHHHHHHHHH----hCCCc------cCeeee
Q psy11202 11 WNSKE-YKTS-LSK-SNTVLELKQEILKQ----TGVNP------ERQKLL 47 (360)
Q Consensus 11 ~~g~~-~~i~-v~~-~~Tv~~LK~~I~~~----tgVp~------~rQKLl 47 (360)
|+.-+ +.+. |+. +.||.+|++.+.+. .|++| +..||.
T Consensus 11 yRn~K~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy 60 (122)
T PF10209_consen 11 YRNVKNLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIY 60 (122)
T ss_pred CCceeeeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEE
Confidence 44444 3344 775 89999998887665 55655 445665
No 324
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=28.61 E-value=1.2e+02 Score=28.38 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCceEEEEEE-ECC---------eEEEEEeCCCCCHHHHHHHHHHHh
Q psy11202 1 MGDSLNLIIK-WNS---------KEYKTSLSKSNTVLELKQEILKQT 37 (360)
Q Consensus 1 m~~~i~i~vk-~~g---------~~~~i~v~~~~Tv~~LK~~I~~~t 37 (360)
|..+|+|+|+ +.. ++|.|++++..||.++=..|.+..
T Consensus 1 ~~~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~~ 47 (239)
T PRK13552 1 MGRTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREEQ 47 (239)
T ss_pred CCceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhcC
Confidence 7777899888 332 558999999999999999998753
No 325
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=28.47 E-value=41 Score=34.97 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=20.2
Q ss_pred eEEEEcCCcHHHHHHHHHH-hCC
Q psy11202 179 DIAIWSATGMKWIEEKMKL-LGV 200 (360)
Q Consensus 179 eivIwTas~~~ya~~il~~-L~~ 200 (360)
+++|-||+..-|+++-++. +|.
T Consensus 110 ~~vVVTAsPrvmVEpFake~LG~ 132 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKEHLRA 132 (498)
T ss_pred eEEEEeCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999 655
No 326
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.45 E-value=1e+02 Score=23.82 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=40.3
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEE
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~ 76 (360)
+++..+...++..+||+++ -+..|||...-.++ + .+|+... + ++-+++|+.|.+-
T Consensus 20 ~r~~~~~~~~~~~~tvkd~----IEsLGVP~tEV~~i-~-vNG~~v~----~-~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 20 RRGGPFTHPFDGGATVKDV----IESLGVPHTEVGLI-L-VNGRPVD----F-DYRLKDGDRVAVY 74 (81)
T ss_pred hcCCceEEecCCCCcHHHH----HHHcCCChHHeEEE-E-ECCEECC----C-cccCCCCCEEEEE
Confidence 4456678889999999886 45679999999987 2 4675443 2 2557899988764
No 327
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=27.52 E-value=1.7e+02 Score=23.66 Aligned_cols=33 Identities=3% Similarity=0.104 Sum_probs=27.4
Q ss_pred eEEEEEEECC--eEEEEEeCCCCCHHHHHHHHHHH
Q psy11202 4 SLNLIIKWNS--KEYKTSLSKSNTVLELKQEILKQ 36 (360)
Q Consensus 4 ~i~i~vk~~g--~~~~i~v~~~~Tv~~LK~~I~~~ 36 (360)
.+.|.|.+.+ ..+++.+++++|+.+|-+.+..+
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 4677887764 66899999999999999988776
No 328
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=27.47 E-value=2.8e+02 Score=21.19 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred ECCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEc
Q psy11202 11 WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMG 77 (360)
Q Consensus 11 ~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~g 77 (360)
.+..+|-|-. .|+.+|+.+..+..+++..--.|. |.--|..+.|+.-+..+ .++..+|++.
T Consensus 9 ~r~~k~GV~A---~sL~eL~~K~~~~l~l~~~~~~l~-L~eDGT~VddEeyF~tL--p~nt~l~~L~ 69 (74)
T smart00266 9 DRNVRKGVAA---SSLEELLSKVCDKLALPDSPVTLV-LEEDGTIVDDEEYFQTL--PDNTELMALE 69 (74)
T ss_pred CCCeeEEEEc---CCHHHHHHHHHHHhCCCCCCcEEE-EecCCcEEccHHHHhcC--CCCcEEEEEc
Confidence 3445555544 389999999999999996644543 32477777777666665 5777777664
No 329
>KOG4361|consensus
Probab=27.18 E-value=27 Score=34.62 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=55.5
Q ss_pred eEEEEEEECCeEEEEEeCCCCCHH---HHHHHHHHHhCCCccCe--eeeccccCCCCCCCc-cccccccCCCCCEEEEEc
Q psy11202 4 SLNLIIKWNSKEYKTSLSKSNTVL---ELKQEILKQTGVNPERQ--KLLNLKHAGKIPSDD-TKLADTNATDGFKLMVMG 77 (360)
Q Consensus 4 ~i~i~vk~~g~~~~i~v~~~~Tv~---~LK~~I~~~tgVp~~rQ--KLlgl~~kgk~l~D~-~~L~~~~l~~g~~i~l~g 77 (360)
.+.|++.++..-+.+-+.+..+.. +++......+|+.-..| |++ |.++.+.|. ..+..++.++-++|.++-
T Consensus 61 ~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~---y~~~e~rd~~l~l~~~g~p~~sk~~~~~ 137 (344)
T KOG4361|consen 61 GIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLV---YVDKELRDQSLRLSSAGVPDASKINVVP 137 (344)
T ss_pred Cccceeeecccccccccccccccccchhhhcccccccceeecccccccc---eecccccccccccccccCcccccceecc
Confidence 466667665555555555555555 99999999999988888 888 899887776 578888989888888774
Q ss_pred cCc
Q psy11202 78 SLE 80 (360)
Q Consensus 78 s~~ 80 (360)
...
T Consensus 138 ~~~ 140 (344)
T KOG4361|consen 138 DPG 140 (344)
T ss_pred Chh
Confidence 443
No 330
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=26.28 E-value=56 Score=33.49 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCCCceEEeecccceeecCCC----cccceeecCccHHHHHHHHh-cCCeEEEEcCCcHHHH
Q psy11202 135 RPGKKLLVLDIDYTLFDHRSA----AEQGYELMRPYLHEFLTSAY-KNYDIAIWSATGMKWI 191 (360)
Q Consensus 135 ~~~kk~LVLDLD~TLv~~~~~----~~~~~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya 191 (360)
+..+|.+|.|+|||+..+.-- ..-+..+.--|+........ .+|.|.-+||-+..-|
T Consensus 372 r~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa 433 (580)
T COG5083 372 RNNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQA 433 (580)
T ss_pred eCCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccch
Confidence 458899999999999976421 11234555666666666666 4788888888654333
No 331
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=26.27 E-value=2.2e+02 Score=22.73 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=27.1
Q ss_pred eEEEEEEEC--CeEEEEEeCCCCCHHHHHHHHHHH
Q psy11202 4 SLNLIIKWN--SKEYKTSLSKSNTVLELKQEILKQ 36 (360)
Q Consensus 4 ~i~i~vk~~--g~~~~i~v~~~~Tv~~LK~~I~~~ 36 (360)
.+.|+|.+. +..+++.++.++|+.+|-.++...
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 478888886 667889999999999998888777
No 332
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=26.26 E-value=1.7e+02 Score=25.61 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=35.2
Q ss_pred eEEEEEEE-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeecc
Q psy11202 4 SLNLIIKW-NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNL 49 (360)
Q Consensus 4 ~i~i~vk~-~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl 49 (360)
.+.+.|.. .|....|.+++++|+.++-..+....|++ .+...||
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~--~~~~F~L 47 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR--ESEYFGL 47 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC--ccceeEE
Confidence 46677775 66677899999999999999999999994 3555555
No 333
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=26.12 E-value=1.3e+02 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeec
Q psy11202 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLN 48 (360)
Q Consensus 13 g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlg 48 (360)
...|.+.|++++|=.++|..|+.++||.+..-..+.
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 357999999999999999999999999998887664
No 334
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=25.73 E-value=1.2e+02 Score=20.99 Aligned_cols=20 Identities=10% Similarity=0.332 Sum_probs=17.5
Q ss_pred eEEEEEEECCeEEEEEeCCC
Q psy11202 4 SLNLIIKWNSKEYKTSLSKS 23 (360)
Q Consensus 4 ~i~i~vk~~g~~~~i~v~~~ 23 (360)
.+++++.|+|..+.|+++.+
T Consensus 9 ~l~F~~~~rg~~l~v~i~~~ 28 (54)
T PF03633_consen 9 SLSFRLRYRGHWLEVEITHE 28 (54)
T ss_dssp EEEEEEEETTEEEEEEEETT
T ss_pred EeEEEEEECCEEEEEEEECC
Confidence 48899999999999998864
No 335
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=25.45 E-value=1.2e+02 Score=26.74 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=28.1
Q ss_pred eEEEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q psy11202 4 SLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGV 39 (360)
Q Consensus 4 ~i~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgV 39 (360)
.+.|+++-+|+.++++++++.++.++=... .+||+
T Consensus 6 ~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgt 40 (159)
T PRK09908 6 TITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSV 40 (159)
T ss_pred ceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCC
Confidence 467888899999999999999999876653 55654
No 336
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=24.96 E-value=1.1e+02 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=36.0
Q ss_pred EEEEEECCeEEEEEeCCCCCHHHHHHHHHHHhCCC---ccCeeeeccccCCC
Q psy11202 6 NLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVN---PERQKLLNLKHAGK 54 (360)
Q Consensus 6 ~i~vk~~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp---~~rQKLlgl~~kgk 54 (360)
.++++-+|+...+.||+.+++.-+-++.+...|.+ +..+++.+ +.|.
T Consensus 2 ~~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~--a~G~ 51 (91)
T cd05484 2 TVTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRT--ATGT 51 (91)
T ss_pred EEEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEe--cCCC
Confidence 36778899999999999999998889888888854 44455553 4554
No 337
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=24.08 E-value=3.2e+02 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHh
Q psy11202 23 SNTVLELKQEILKQT 37 (360)
Q Consensus 23 ~~Tv~~LK~~I~~~t 37 (360)
.+||.+|++.|.+..
T Consensus 25 ~~tv~~l~~~L~~~~ 39 (81)
T PRK11130 25 FPTVEALRQHLAQKG 39 (81)
T ss_pred CCCHHHHHHHHHHhC
Confidence 489999999998876
No 338
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=24.02 E-value=90 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh
Q psy11202 16 YKTSLSKSNTVLELKQEILKQT 37 (360)
Q Consensus 16 ~~i~v~~~~Tv~~LK~~I~~~t 37 (360)
..++++.++|+.++|+++.+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 3578899999999999999875
No 339
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=24.02 E-value=96 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=20.8
Q ss_pred EECCeEEEEEeCCC-CCHHHHHHHHHHHhCC
Q psy11202 10 KWNSKEYKTSLSKS-NTVLELKQEILKQTGV 39 (360)
Q Consensus 10 k~~g~~~~i~v~~~-~Tv~~LK~~I~~~tgV 39 (360)
+.......|.++.. .+|.+||..|.+.-+.
T Consensus 6 kS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 6 KSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp TT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred cccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 33444456888754 7999999999887653
No 340
>KOG4572|consensus
Probab=23.94 E-value=1.5e+02 Score=32.80 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCeEEEEEeCC-CCCHHHHHHHHHHHhCCCccCeeeeccccCCC-CCCCcccc---ccccCCCCCEEEEE
Q psy11202 12 NSKEYKTSLSK-SNTVLELKQEILKQTGVNPERQKLLNLKHAGK-IPSDDTKL---ADTNATDGFKLMVM 76 (360)
Q Consensus 12 ~g~~~~i~v~~-~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk-~l~D~~~L---~~~~l~~g~~i~l~ 76 (360)
+|+..+++++. ..|+++||..|++..|+....|-++ ..|+ .+.-+..| +.+| ++-..|.+.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl---~egGecmaadkrl~e~StaG-TdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFL---DEGGECMAADKRLAEISTAG-TDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeee---ecCCcCcccccchhhhcccc-CCCCceEEe
Confidence 46777777654 5799999999999999999999998 5554 34444444 4444 333445443
No 341
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=23.36 E-value=1.8e+02 Score=31.97 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=47.8
Q ss_pred CCceEEeecccceeecCCCcccceeecCccHHHHHHHHhc-CCeEEEEcCCcHHHHHHHHHHhCCC
Q psy11202 137 GKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYK-NYDIAIWSATGMKWIEEKMKLLGVT 201 (360)
Q Consensus 137 ~kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivIwTas~~~ya~~il~~L~~~ 201 (360)
++..+.+=.|++++-. ....-..||++.+.++.|.+ ++++++.|..+...+..+.+++|+.
T Consensus 547 g~~~v~va~~~~~~g~----i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 547 GKTVVLVLRNDDVLGL----IALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred CCEEEEEEECCEEEEE----EEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 4445555556665532 11345679999999999987 8999999999999999999999884
No 342
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=22.49 E-value=1.7e+02 Score=22.80 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEeCC-CCCHHHHHHHHHH-HhCCCc-c---CeeeeccccCCCC----CCCccccccccCCCCCEEEEE
Q psy11202 18 TSLSK-SNTVLELKQEILK-QTGVNP-E---RQKLLNLKHAGKI----PSDDTKLADTNATDGFKLMVM 76 (360)
Q Consensus 18 i~v~~-~~Tv~~LK~~I~~-~tgVp~-~---rQKLlgl~~kgk~----l~D~~~L~~~~l~~g~~i~l~ 76 (360)
|.++. .+|+.+|-++|-. ..|+.. + ...++ |.... ...+.+|+++||++|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~il---yd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTIL---YDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEE---E-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEE---EcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 44543 4799999887643 555432 1 33444 43322 223478999999999988764
No 343
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.04 E-value=3.8e+02 Score=20.77 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccccCCCCCEEEEEccCcc
Q psy11202 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSLEQ 81 (360)
Q Consensus 12 ~g~~~~i~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~~l~~g~~i~l~gs~~~ 81 (360)
+..+|-|-. .|+.+|+.+..+..+++. .-.|. |.--|..+.|+.-+..+ .++..+|+++..+.
T Consensus 12 rs~k~GV~A---~sL~eL~~K~~~~l~l~~-~~~lv-L~eDGT~Vd~EeyF~tL--p~nt~l~vL~~gq~ 74 (79)
T cd06538 12 RSLRKGIMA---DSLEDLLNKVLDALLLDC-ISSLV-LDEDGTGVDTEEFFQAL--ADNTVFMVLGKGQK 74 (79)
T ss_pred CceeEeEEc---CCHHHHHHHHHHHcCCCC-ccEEE-EecCCcEEccHHHHhhC--CCCcEEEEECCCCc
Confidence 344455544 489999999999999953 33333 33467777777666665 57778887765443
No 344
>KOG2044|consensus
Probab=20.98 E-value=2.2e+02 Score=31.45 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=54.0
Q ss_pred CeeEecccccCcCC---CCCchHHHHHHHHHHhccC-----------CCCCc---hhchhhhhhhhhhhHHHHHHHHHHH
Q psy11202 265 NGLRIRPFREAHLN---RGSDRELKRLGRYLDEIAT-----------VEDLT---ALNHRNWEKYLHAKHKERKRARRRA 327 (360)
Q Consensus 265 Ngi~I~~f~~~~~~---~~~D~~L~~L~~~L~~la~-----------~~DVr---~~~~~~w~~~~~~~~~~~~~~~~~~ 327 (360)
||| |.|+.-+... ...|..+..+-.|+..|-. +|-|. .+++..=++|...+..+++++....
T Consensus 56 NGI-IHPC~HPEdkPaP~tedEm~~avFeyiDrlf~mvRPRkLLymAIDGVAPRAKMNQQRsRRFRaaKeaae~~~e~e~ 134 (931)
T KOG2044|consen 56 NGI-IHPCTHPEDKPAPETEDEMFVAVFEYIDRLFSMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKEAAEKEAEIER 134 (931)
T ss_pred Ccc-cccCCCCCCCCCCccHHHHHHHHHHHHHHHHHhccchheeEEeecccCchhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 688 7777553211 2357777788888776542 34454 3566666777777766666655554
Q ss_pred HHhh--hhCCCCCCchhhhccCCCcccCCCC
Q psy11202 328 MMNR--ERGGEEEGEEEEDEGEGSEITGSSD 356 (360)
Q Consensus 328 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (360)
.+.+ ..|.-.+.+++.+-=+-.-||-|.|
T Consensus 135 ~ree~~~~G~~lpp~~~~e~fDSNcITPGTp 165 (931)
T KOG2044|consen 135 LREEFEAEGKFLPPKVKKETFDSNCITPGTP 165 (931)
T ss_pred HHHHHHhcCCcCCchhhccccccCccCCCCh
Confidence 4444 3444445555555555666776655
No 345
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=20.70 E-value=31 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=22.9
Q ss_pred ceEEeecccceeecCCCcccceeecCccHHHHHHH
Q psy11202 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTS 173 (360)
Q Consensus 139 k~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~ 173 (360)
+.++||+.||...-+-.......+.|-.+..||..
T Consensus 2 ~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~ 36 (220)
T TIGR01691 2 KNVLLDIEGTTGSISFVHDVLFPYAASRLESFVND 36 (220)
T ss_pred CEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHH
Confidence 57899999999865332222344556677777764
No 346
>KOG3040|consensus
Probab=20.55 E-value=2.7e+02 Score=25.98 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=42.0
Q ss_pred CceEEeecccceeecCCCcccceeecCccHHHHHHHHh-cCCeEEEEcCCcHHHHHHHHHHh
Q psy11202 138 KKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLL 198 (360)
Q Consensus 138 kk~LVLDLD~TLv~~~~~~~~~~~~~RP~l~eFL~~l~-~~yeivIwTas~~~ya~~il~~L 198 (360)
-+.+.|||-|||-.+. ..=|+..|-|+.|+ ++-.|-.-|.++.+--..+.++|
T Consensus 7 v~gvLlDlSGtLh~e~--------~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL 60 (262)
T KOG3040|consen 7 VKGVLLDLSGTLHIED--------AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL 60 (262)
T ss_pred cceEEEeccceEeccc--------ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH
Confidence 4567899999998543 26799999999999 69999888988876666666555
No 347
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.54 E-value=3.7e+02 Score=21.17 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=21.5
Q ss_pred EEEEEeC--CCCCHHHHHHHHHHHhCCCccCeeee
Q psy11202 15 EYKTSLS--KSNTVLELKQEILKQTGVNPERQKLL 47 (360)
Q Consensus 15 ~~~i~v~--~~~Tv~~LK~~I~~~tgVp~~rQKLl 47 (360)
++.++++ ..+||.+|=+.|.+.. ++.+..|+
T Consensus 18 ~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf 50 (94)
T cd01764 18 EHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLF 50 (94)
T ss_pred EEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhE
Confidence 4445444 5689999988888776 56666665
No 348
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=20.46 E-value=1.3e+02 Score=24.39 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=31.9
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCccCeeeeccccCCCCCCCccccccc
Q psy11202 19 SLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADT 65 (360)
Q Consensus 19 ~v~~~~Tv~~LK~~I~~~tgVp~~rQKLlgl~~kgk~l~D~~~L~~~ 65 (360)
=|+.+.||++|...|....+++++ |-|. +-+++.++..+.+++++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~-~alf-l~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPE-QALF-LFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TT-S-EE-EEBTTBESSTTSBHHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCC-ceEE-EEEcCcccchhhHHHHH
Confidence 378899999999999999998887 5543 21566666667777665
Done!