RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11202
(360 letters)
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 272 bits (696), Expect = 4e-90
Identities = 184/316 (58%), Positives = 234/316 (74%), Gaps = 3/316 (0%)
Query: 3 DSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ +I+KW+ KEY L+ +TV L+ EI ++T V PERQKLLNLK+ GK +D+ K+
Sbjct: 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKI 63
Query: 63 ADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKD-IYLAKIDK 121
+ FKLM++GS E I++A + P +I E+VDDFD +++ +YLAK+ +
Sbjct: 64 SALELKPNFKLMMVGSTEADIEDACSLPDNIGEVVDDFDDADEREESVAHSAVYLAKVQR 123
Query: 122 RIQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIA 181
R++DY+I L PR GKKLLVLDIDYTLFDHRS AE G ELMRPYLHEFLTSAY++YDI
Sbjct: 124 RVRDYKIKELAPPREGKKLLVLDIDYTLFDHRSPAETGTELMRPYLHEFLTSAYEDYDIV 183
Query: 182 IWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFP 241
IWSAT M+WIEEKM+LLGV N NYK+ FY+D +AMISVH+P+ GVV+VKPLGVIW +
Sbjct: 184 IWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALYK 243
Query: 242 SLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIAT-VED 300
YN +NTIMFDDIRRNFLMNP++GL+IRPFR+AHLNRG+D EL +L YL +IA D
Sbjct: 244 Q-YNSSNTIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTDTELLKLSDYLRKIAHHCPD 302
Query: 301 LTALNHRNWEKYLHAK 316
+LNHR WE Y K
Sbjct: 303 FNSLNHRKWEHYHPKK 318
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Length = 90
Score = 87.6 bits (217), Expect = 9e-22
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 3 DSLNLIIKWNSKEYK-TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
L +I+KW +EY T+LS+ +TVL+LKQ + TGV PERQKLL LK GK +D K
Sbjct: 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 65
Query: 62 LADTNATDGFKLMVMGSLEQSIQEA 86
L K+M+MG+ E
Sbjct: 66 LGALKLKPNTKIMMMGTRESGPSSG 90
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein
AT2G30105; ubiquitin-like protein, NESG, leucine-rich
repeat, structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 82.0 bits (203), Expect = 7e-20
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 2 GDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
++ L +K+ K S+S TV +LK ++ T V P QKL+ GK+ + +
Sbjct: 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVETST 66
Query: 62 LADTNATDGFKLMVMGS 78
L ++ G KLM+M S
Sbjct: 67 LKQSDVGSGAKLMLMAS 83
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific
protease 14, USP14, ubiquitin-like fold, structural
genomics; NMR {Mus musculus} SCOP: d.15.1.1
Length = 96
Score = 79.9 bits (197), Expect = 6e-19
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 3 DSLNLIIKWNSKEYKT-SLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
++ +KW ++++ L+ + K ++ TGV P RQK++ G DD
Sbjct: 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDDD- 61
Query: 62 LADTNATDGFKLMVMGSLEQSIQEASTKPLD 92
+ +G +++MGS + +E S K
Sbjct: 62 WGNIKMKNGMTVLMMGSADALPEEPSAKTSG 92
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed;
ubiquitin fold, structural genomics, D7WSU128E protein;
HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Length = 95
Score = 75.6 bits (186), Expect = 2e-17
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 3 DSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ ++L I WN ++ + +T ELKQ+I TG+ P QK++ + G +P +D L
Sbjct: 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVP-EDKTL 71
Query: 63 ADTNATDGFKLMVMGSLE 80
+ T G K+MV+GS
Sbjct: 72 REIKVTSGAKIMVVGSTI 89
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1; protein-peptide complex, HAD superfamily,
hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A*
3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Length = 181
Score = 67.8 bits (166), Expect = 1e-13
Identities = 32/186 (17%), Positives = 72/186 (38%), Gaps = 35/186 (18%)
Query: 131 LNEPRPGKKLLVLDIDYTL----------------FDHRSAAEQGYELMRPYLHEFLTSA 174
K +V+++D TL + Q Y L RP++ EFL
Sbjct: 8 AKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRM 67
Query: 175 YKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLG 234
+ ++ +++A+ K+ + LL + + + + Y VK L
Sbjct: 68 GELFECVLFTASLAKYADPVADLL----DKWGAFRARLFRESCVFHR-GNY----VKDLS 118
Query: 235 VIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDE 294
+ G+ + ++ D+ +++ +P N + + + + SD EL L + ++
Sbjct: 119 RL-GR-----DLRRVLILDNSPASYVFHPDNAVPVASW----FDNMSDTELHDLLPFFEQ 168
Query: 295 IATVED 300
++ V+D
Sbjct: 169 LSRVDD 174
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion,
structural genomics, PSI, protein structure initiative;
HET: KEG; 2.10A {Homo sapiens}
Length = 195
Score = 67.8 bits (166), Expect = 1e-13
Identities = 36/190 (18%), Positives = 76/190 (40%), Gaps = 38/190 (20%)
Query: 130 ILNEPRP---GKKLLVLDIDYTL----------------FDHRSAAEQGYELMRPYLHEF 170
+L E GKK +V+D+D TL + Q Y L RP++ EF
Sbjct: 17 LLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEF 76
Query: 171 LTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEV 230
L + ++ +++A+ K+ + LL + + + + Y V
Sbjct: 77 LQRMGQLFECVLFTASLAKYADPVADLL----DRWGVFRARLFRESCVFHR-GNY----V 127
Query: 231 KPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGR 290
K L + G+ + I+ D+ +++ +P N + ++ + + +D EL L
Sbjct: 128 KDLSRL-GR-----ELSKVIIVDNSPASYIFHPENAVPVQSWF----DDMTDTELLDLIP 177
Query: 291 YLDEIATVED 300
+ + ++ +D
Sbjct: 178 FFEGLSREDD 187
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 66.6 bits (163), Expect = 4e-13
Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 23/199 (11%)
Query: 128 IDILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYE-LMRPYLHEFLTSAYKNYDIAIWSAT 186
P LV+ ++ L + + G+ RP FL + Y+I ++S+
Sbjct: 24 PPPPPPPYQRPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSN 83
Query: 187 GMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNP 246
M + ++ + L +P + Y + + +K L + +
Sbjct: 84 YMMYSDKIAEKL----DPIHAFVSYNLFKEHCVYKDGVH----IKDLSKL------NRDL 129
Query: 247 TNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKRLGRYLDEIAT--VEDL-TA 303
+ I+ D ++ + P N + + P+ +D +L RL +L+ +AT +D+
Sbjct: 130 SKVIIIDTDPNSYKLQPENAIPMEPWNG-----EADDKLVRLIPFLEYLATQQTKDVRPI 184
Query: 304 LNHRNWEKYLHAKHKERKR 322
LN +K L + R +
Sbjct: 185 LNSFEDKKNLAEEFDHRVK 203
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 55.9 bits (134), Expect = 2e-10
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 2 GDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
G L+ +++ + L + TV E+KQ + + + + L K D T
Sbjct: 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWK--TGDVEDSTV 64
Query: 62 LADTNATDGFKLMVMGSLEQSIQEAST 88
L + L V+ +S
Sbjct: 65 LKSLHLPKNNSLYVLTPDLPPPSSSSH 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 4e-09
Identities = 57/343 (16%), Positives = 113/343 (32%), Gaps = 113/343 (32%)
Query: 3 DSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ +L++K+ + +L +E+L NP L + D
Sbjct: 302 EVKSLLLKYLDCRPQ----------DLPREVLT---TNP-----RRLSIIAESIRDGLAT 343
Query: 63 AD---TNATDGFKLMVMGSLEQSIQEASTKPL-----------DIPEIV-----DDFDIE 103
D D ++ SL ++ A + + IP I+ D I+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD-VIK 401
Query: 104 EDQVAIENKDIYLAKIDKR-------IQDYQIDILNEPRPGKKLLVLDIDYTLFDHRSAA 156
D + + NK + ++K+ I +++ + L+ +Y L HRS
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK---------LENEYAL--HRSIV 450
Query: 157 EQGYELMRPY-LHEFLTSAYKNYDIAIWSATG---------------------MKWIEEK 194
+ Y + + + + + Y +S G +++E+K
Sbjct: 451 DH-YNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 195 MKLLGVTVNPNYKIA-------FYVDYSAMISVHLPKYGVVEVKPLGVIWGKFPSLYNPT 247
++ N + I FY Y I + PKY + V + F L
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY---ICDNDPKYERL-VNAI----LDF--LPKIE 556
Query: 248 NTIM---FDDIRRNFLMNPRNGLRIRPFREAHLNRGSDRELKR 287
++ + D+ R LM + F EAH ++++R
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI----FEEAH------KQVQR 589
Score = 53.3 bits (127), Expect = 8e-08
Identities = 46/271 (16%), Positives = 78/271 (28%), Gaps = 75/271 (27%)
Query: 99 DFDIEEDQVAIENKDI-------YLAKID-KRIQDY--------QID-ILNEPRPGKKLL 141
DF+ E Q + KDI ++ D K +QD +ID I+
Sbjct: 8 DFETGEHQ--YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT- 64
Query: 142 VLDIDYTLFDH-RSAAEQGY-----ELMRP-YLHEFLTSAYKNYDIAIWSATGMKWIEEK 194
LF S E+ E++R Y +FL S K S +IE++
Sbjct: 65 -----LRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQP-SMMTRMYIEQR 116
Query: 195 MKLL-GVTVNPNYKIAFYVDYSAM------------ISVH--------------LPKYGV 227
+L V Y ++ Y + + + Y V
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 228 VEVKPLGVIWGKFPSLYNPTNTI-----MFDDIRRNFLMNPRNGLRIRPFREAHLNRGSD 282
+ W + +P + + I N+ + I+ H +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAEL 234
Query: 283 RELKRLGRY------LDEIATVEDLTALNHR 307
R L + Y L + + A N
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Score = 49.5 bits (117), Expect = 1e-06
Identities = 60/400 (15%), Positives = 118/400 (29%), Gaps = 117/400 (29%)
Query: 1 MGDSLNLIIKW--------------NSKEYKTSLSKSNTVLEL--KQEILKQTGVNPERQ 44
+ + L + K+ ++ Y + ++ K + + RQ
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 45 KLLNLKHA-----------GKIPSDDTKLADTNATD-------GFKL--MVMGSLEQSIQ 84
LL L+ A GK T +A FK+ + + +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKN------ 191
Query: 85 EASTKPLDIPEIVDDFDIEEDQVAIENKDIYLAKIDKRIQDYQI---DILNEPRPGKKLL 141
P + E++ + D D + + I RI Q +L LL
Sbjct: 192 --CNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 142 VLD-------IDYTLFDHRS------------AAEQGYELMRPYLHEFLTSAYKNYDIAI 182
VL + F+ L + + ++
Sbjct: 249 VLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 183 WSATGMKWIEEKMKLL---GVTVNP------------------NYKIAFYVDYSAMISVH 221
K+++ + + L +T NP N+K + +I
Sbjct: 307 LL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 222 LPKYGVVEVKP----LGVIWGKFP-SLYNPTNT--IMFDDIRRNFLMNPRNGLRIRPFRE 274
L E + L V FP S + PT +++ D+ ++ +M N L +
Sbjct: 363 LNVLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH----KY 414
Query: 275 AHLNRGSDRELKRL-GRYLDEIATVEDLTALNHRNW-EKY 312
+ + + + YL+ +E+ AL HR+ + Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHY 453
Score = 37.9 bits (87), Expect = 0.006
Identities = 47/394 (11%), Positives = 110/394 (27%), Gaps = 130/394 (32%)
Query: 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNA 67
I+ + + V ++ + IL + + H +
Sbjct: 21 ILSVFEDAFVDNFD-CKDVQDMPKSILSKE----------EIDHIIMSKDAVSGT----- 64
Query: 68 TDGFKLMVMGSL----EQSIQEASTKPLDIPEIVDDFDIEEDQVAIENKD------IYLA 117
L + +L E+ +Q+ + L ++ + E + +Y+
Sbjct: 65 -----LRLFWTLLSKQEEMVQKFVEEVLR-----INYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 118 KIDKRIQDYQI-DILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLT---- 172
+ D+ D Q+ N R + L L R A + +RP + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRL-QPYLKL---------RQALLE----LRP--AKNVLIDGV 158
Query: 173 ----------SAYKNYDIAIWSATGMKWIE-----------EKMKLLGVTVNPNYKIAFY 211
+Y + + W+ E ++ L ++PN+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 212 VDYSAMISVHLPKYGVVEVKPLGVIWGKFP-SLYNPTNTIMFDDIR-----RNF------ 259
+ + +H + E++ L + + L ++ +++ F
Sbjct: 219 HSSNIKLRIHSIQA---ELRRL-LKSKPYENCL------LVLLNVQNAKAWNAFNLSCKI 268
Query: 260 LMNPRN--------GLRIRPFREAHLNRG-SDRELKRL-GRYLDEIATVEDL-------- 301
L+ R H + + E+K L +YLD +DL
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTN 326
Query: 302 ---TAL------NHRN-WEKYLHAKHKERKRARR 325
++ + W+ + H +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 51.3 bits (122), Expect = 9e-09
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 4 SLNLIIKWNSKEYKTSLSKSN-----TVLELKQEILKQTGVNPERQKLLNLKHAGKIPSD 58
L + + +++++ ++ V +L Q + + GV QKL+ +
Sbjct: 7 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF--KGKSLKEM 64
Query: 59 DTKLADTNATDGFKLMVMGS 78
+T L+ DG ++M++G
Sbjct: 65 ETPLSALGIQDGCRVMLIGK 84
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 48.9 bits (117), Expect = 6e-08
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 7 LIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK-LADT 65
+ +K+ SK++ + ++ TV LK +I +R +L ++G +DD + L +
Sbjct: 18 VTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY---YSGIELADDYRNLNEY 74
Query: 66 NATDGFKLMVMGSLEQSIQE 85
T+ +++V ++
Sbjct: 75 GITEFSEIVVFLKSINRAKD 94
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae}
Length = 106
Score = 49.3 bits (118), Expect = 7e-08
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
++ L SNT+LE K ++ + + KL+ ++GK+ D +++ DG ++
Sbjct: 12 EKVPLDLEPSNTILETKTKLAQSISCEESQIKLI---YSGKVLQDSKTVSECGLKDGDQV 68
Query: 74 MVMGSLEQSIQEASTKP 90
+ M S ++S + T+
Sbjct: 69 VFMVSQKKSTKTKVTER 85
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 47.4 bits (113), Expect = 3e-07
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
+ + +K + S++ + T+ +LK+EI ++ +P++ L+ AGKI D LA
Sbjct: 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKDPDSLAQ 74
Query: 65 TNATDGFKL-MVMGSLEQSIQEASTKP 90
DG + +V+ +++
Sbjct: 75 CGVRDGLTVHLVIKRQHRAMGNECPAS 101
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 96
Score = 47.0 bits (112), Expect = 3e-07
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 3 DSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ + +K ++ L++++ V K++I K N +R L+ GKI D L
Sbjct: 16 RIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI---FTGKILRDQDIL 72
Query: 63 ADTNATDGFKLMVMGSLEQSIQEA 86
+ DG + V+
Sbjct: 73 SQRGILDGSTVHVVVRSHSGPSSG 96
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 46.6 bits (111), Expect = 5e-07
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 5 LNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
+ + +K + S++ + T+ +LK+EI ++ +P++ L+ AGKI D LA
Sbjct: 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKDPDSLAQ 79
Query: 65 TNATDG 70
DG
Sbjct: 80 CGVRDG 85
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 44.2 bits (105), Expect = 3e-06
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 DSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
DSL +++K +S+ + V E K+ I + E+Q+L+ + G++ DD K
Sbjct: 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQDDKK 60
Query: 62 LADTN 66
L + N
Sbjct: 61 LQEYN 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural
genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 125
Score = 44.4 bits (105), Expect = 5e-06
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 GDSLNLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
+ + +K ++ + ++ ++++V + K+ I K+ ++ L+ AGKI D
Sbjct: 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGKILKDQDT 86
Query: 62 LADTNATDG 70
L DG
Sbjct: 87 LIQHGIHDG 95
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 43.1 bits (102), Expect = 9e-06
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 6 NLIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADT 65
+ +K ++ + ++ ++++V + K+EI K+ + ++ L+ AGKI D L+
Sbjct: 27 KVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI---FAGKILKDQDTLSQH 83
Query: 66 NATDG 70
DG
Sbjct: 84 GIHDG 88
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 42.7 bits (101), Expect = 1e-05
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVN---PERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ +K + TV LK++I + G + QKL+ +AGKI +DDT L + +
Sbjct: 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI---YAGKILNDDTALKEYKIDEK 67
Query: 71 FKLMVMGSLEQSIQEASTKPL 91
++VM + +++ + L
Sbjct: 68 NFVVVMVTKPKAVSTPAPATL 88
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold,
GP78-binding, chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 41.9 bits (99), Expect = 2e-05
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 DSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK 61
DSL +++K +S+ + V E K+ I + E+Q+L+ + G++ DD K
Sbjct: 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQDDKK 72
Query: 62 LADTN 66
L + N
Sbjct: 73 LQEYN 77
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 43.3 bits (102), Expect = 2e-05
Identities = 3/66 (4%), Positives = 15/66 (22%), Gaps = 3/66 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
+E + + V+ + E + + + + +
Sbjct: 11 QEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFN---KWSFEEVEVKDASLVDYVQVRQP 67
Query: 74 MVMGSL 79
+ +
Sbjct: 68 IFVAHT 73
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 41.1 bits (97), Expect = 2e-05
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 2 GDSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDT 60
+ L +K +E + + V LKQ + ++ V +Q+LL GK +D
Sbjct: 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL---FKGKALADGK 61
Query: 61 KLADTNATDG 70
+L+D +
Sbjct: 62 RLSDYSIGPN 71
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling
proteins; 1.15A {Saccharomyces cerevisiae} SCOP:
d.15.1.1 PDB: 2bwe_S
Length = 77
Score = 41.0 bits (97), Expect = 3e-05
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 21 SKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ +TVL+ K+ I K G+ Q+L+ ++GKI DD + + DG
Sbjct: 21 APESTVLQFKEAINKANGIPVANQRLI---YSGKILKDDQTVESYHIQDG 67
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K+ K + ++TV +K+ + GV P Q+ +G+ +D K + + +
Sbjct: 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF---FSGRPLTDKMKFEELKIPKDYVV 90
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 41.1 bits (97), Expect = 3e-05
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVN---PERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ +K + TV LK++I + G + QKL+ +AGKI SDD + D +
Sbjct: 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSDDVPIRDYRIDEK 72
Query: 71 FKLMVM 76
++VM
Sbjct: 73 NFVVVM 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 44.2 bits (103), Expect = 4e-05
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 2 GDSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVN---PERQKLLNLKHAGKIPS 57
++ + +K + +K + TV LK++I + G + QKL+ +AGKI S
Sbjct: 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILS 61
Query: 58 DDTKLADTNATDGFKLMVMGSLEQSIQEASTKP 90
DD + D + ++VM + ++ Q S P
Sbjct: 62 DDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPP 94
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 40.5 bits (95), Expect = 6e-05
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 19 SLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+S+ T+ EL++ + V PE Q+L + GK + L D +
Sbjct: 25 DVSRKATIEELRERVWALFDVRPECQRLF---YRGKQLENGYTLFDYDVGLN 73
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B
2nvu_I* 3dqv_A 1bt0_A
Length = 76
Score = 39.9 bits (94), Expect = 7e-05
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
KE + + ++ V +K+ + ++ G+ P++Q+L+ ++GK +D+ AD G L
Sbjct: 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMNDEKTAADYKILGGSVL 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats,
UBL conjugation pathway, nucleus, phosphoprotein; HET:
1PE; 2.40A {Saccharomyces cerevisiae}
Length = 101
Score = 40.4 bits (95), Expect = 8e-05
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 21 SKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ +TVL+ K+ I K G+ Q+L+ ++GKI DD + + DG
Sbjct: 45 APESTVLQFKEAINKANGIPVANQRLI---YSGKILKDDQTVESYHIQDG 91
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 38.8 bits (91), Expect = 2e-04
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIP-SDDTKLADTNATDGFKLMVM 76
+T+L +KQ+I + + +Q L+ G + +D + + +
Sbjct: 30 RDTLLVVKQKIERSQHIPVSKQTLI---VDGIVILREDLTVEQCQIVPTSDIQLE 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 1 MGDSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD 59
MG +L +K E++ SLS S +V ELK +I ++ GV+ +Q+L + +G D
Sbjct: 1 MG--WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA-VHPSGVALQDR 57
Query: 60 TKLADTNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFD----IEEDQVAIENKDIY 115
LA G ++++ + + + + + +
Sbjct: 58 VPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 117
Query: 116 LAKI------------DKRIQDYQI 128
+ + +Y +
Sbjct: 118 QDDLFWLTFEGKPLEDQLPLGEYGL 142
Score = 32.2 bits (73), Expect = 0.12
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ TV LKQ++ GV + L GK D L +
Sbjct: 101 TQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLEDQLPLGEYGLKPL 145
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase,
deamidati bacterial effector, cell cycle-protein
binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 38.5 bits (90), Expect = 3e-04
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
++ V +K+ + ++ G+ P++Q+L+ ++GK +D+ AD G
Sbjct: 20 TDKVERIKERVEEKEGIPPQQQRLI---YSGKQMNDEKTAADYKILGG 64
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 38.1 bits (89), Expect = 3e-04
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
+ + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N + L
Sbjct: 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIHNHSAL 70
Query: 74 MVMGSL 79
++ L
Sbjct: 71 YLLLKL 76
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 37.7 bits (88), Expect = 6e-04
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
KE + + ++ V +K+ + ++ G+ P++Q+L+ ++GK +D+ AD G
Sbjct: 23 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMNDEKTAADYKILGG 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 38.2 bits (89), Expect = 6e-04
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
N + +L ++ V +K +I + TG+ +QKL + G D LA N G
Sbjct: 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ---YEGIFIKDSNSLAYYNMASG 99
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton,
microtubule, CESG, structural genomics, protein
structure initiative, PSI; NMR {Caenorhabditis elegans}
SCOP: d.15.1.1
Length = 122
Score = 38.4 bits (89), Expect = 7e-04
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 1 MGDSLNLIIKWNSKEYKT--SLSKSNTVLELKQEILKQTGVNPERQKLL----NLKHAGK 54
M + +L I N+ ++ ++ +LK+++ G + ++ + + G+
Sbjct: 3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGE 62
Query: 55 IPSDDTKLADTNATDGFKL 73
+ L D DG+++
Sbjct: 63 LTDGAKSLKDLGVRDGYRI 81
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome,
ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A
2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ + ++L+LK+ + KQ GV ++ +++ AGK + + + +
Sbjct: 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI---FAGKELPNHLTVQNCDLEQQ 64
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
d.15.1.1
Length = 111
Score = 37.9 bits (88), Expect = 8e-04
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 18 TSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
T S S V LK++I + + +QKL D+ LA N G
Sbjct: 46 TVQSLSENVGSLKEKIAGEIQIPANKQKLS---GKAGFLKDNMSLAHYNVGAG 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 8e-04
Identities = 42/300 (14%), Positives = 84/300 (28%), Gaps = 130/300 (43%)
Query: 47 LNLKHAGKI------PSDD----TKLADT------NATDGF----------KLMV--MGS 78
L L H G + P+ ++L + T+GF +L+ +G
Sbjct: 9 LTLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 79 LEQSIQEASTKPLD--IPEIVDDFDIEEDQVAIENKDIY-------------LAKIDKRI 123
+ ++ + D + + +F E+ +E DI+ L K + I
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEF---ENCY-LEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 124 QDY--QIDILNEP--RPGKKLLVLDID------YTLFDHRSAAEQG------------YE 161
++Y + P + L + +F QG Y+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNTDDYFEELRDLYQ 178
Query: 162 LMRPYLHEFLTSA------------------YKNYDIAIWSATGMKWIEEKMKLLGVTVN 203
+ + + + + +I ++W+E
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-------LEWLENPSNT------ 225
Query: 204 PNYKIAFYVDYSAMISVHLPKYGV-------VEVKPLGVIWGKFPSLYNPTNTIMFDDIR 256
P+ DY I + P GV V K LG + P + ++
Sbjct: 226 PD------KDYLLSIPISCPLIGVIQLAHYVVTAKLLG---------FTPGE--LRSYLK 268
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell
cycle, DNA damage, DNA repair, DNA-binding, ligase, Met
binding, nuclear protein; 2.00A {Homo sapiens} SCOP:
d.15.1.1
Length = 78
Score = 36.9 bits (86), Expect = 9e-04
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 15 EYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
SLS+ V EL+++I + V P Q+L + GK D L D
Sbjct: 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF---YRGKQMEDGHTLFDYEVRLN 68
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 37.0 bits (86), Expect = 9e-04
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKWSTL 70
Query: 74 MVMGSL 79
++ L
Sbjct: 71 FLLLRL 76
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K
4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Length = 128
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTL 67
Query: 74 MVM 76
++
Sbjct: 68 HLV 70
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; ENDPLASMIC reticulum
stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 93
Score = 36.5 bits (84), Expect = 0.002
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 3 DSLNLIIKWNSKEYKT---SLSKSNTVLELKQEILKQ--TGVNPERQKLLNLKHAGKIPS 57
+ L++K ++ ++ S + +V LK + + PE Q+L+ ++GK+
Sbjct: 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI---YSGKLLL 62
Query: 58 DDTKLAD 64
D L D
Sbjct: 63 DHQCLRD 69
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich,
lectin-like, SPRY, protein transport/signaling protein
complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B
1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A*
3zrf_A
Length = 118
Score = 36.9 bits (85), Expect = 0.002
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 7 LIIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTN 66
L+I+ + T +S+TV ELK+ + PE Q+L ++ D L +
Sbjct: 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY---KDDQLLDDGKTLGECG 61
Query: 67 -----------ATDGFKLMVMGSLEQSIQEASTKPLDIPEIV--DDFDIEEDQVAIE 110
AT G + E E + P ++P+++ D ++ A++
Sbjct: 62 FTSQTARPQAPATVGLAFRADDTFEALRIEPFSSPPELPDVMKPQDSGGSANEQAVQ 118
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 38.6 bits (90), Expect = 0.002
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 130 ILNEPRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATG-- 187
L+ + ++ D D T F H ++ ++ L ++L K+ ++ I TG
Sbjct: 14 TLSTVEHPQYIVFCDFDETYFPHTIDEQKQQDIYE--LEDYLEQKSKDGELIIGWVTGSS 71
Query: 188 MKWIEEKMKLLGVTVNPNYKIAF 210
++ I +KM P++ +
Sbjct: 72 IESILDKMGRGKFRYFPHFIASD 94
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative, hydrolase; NMR {Mus musculus}
Length = 86
Score = 35.6 bits (82), Expect = 0.002
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 20 LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAG------KIPSDDTKLADTNATDGFKL 73
LS + EL+ +I TG+ P Q++L G + D L D G L
Sbjct: 17 LSSRTRLRELQGQIAAITGIAPGSQRIL----VGYPPECLDLSDRDITLGDLPIQSGDML 72
Query: 74 MVMGSLEQSIQEASTKPLDIP 94
+V +E T+P P
Sbjct: 73 IV--------EEDQTRPKASP 85
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 35.4 bits (82), Expect = 0.004
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
+ Y +++ ++ +L LKQ+I Q G+ ++Q+L G++ D L D
Sbjct: 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE---FQGQVLQDWLGLGIYGIQDS 71
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 34.6 bits (80), Expect = 0.006
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
K + + S+T+ LK +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKE 73
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; UBL domain, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 99
Score = 34.9 bits (80), Expect = 0.006
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 2 GDSLNLIIKWNSKEYKT---SLSKSNTVLELKQEILKQ--TGVNPERQKLLNLKHAGKIP 56
G + LIIK +++Y S + TV +LK + + + Q+L+ ++G++
Sbjct: 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV---YSGRLL 77
Query: 57 SDDTKLAD 64
D +L D
Sbjct: 78 PDHLQLKD 85
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 37.1 bits (85), Expect = 0.006
Identities = 37/244 (15%), Positives = 73/244 (29%), Gaps = 49/244 (20%)
Query: 135 RPGKKLLVLDIDYTL----FDHRSAAEQGYELM--------------------------- 163
+ + L++D+D T+ D
Sbjct: 15 QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYI 74
Query: 164 --RPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVH 221
RP L +FL + Y++ I++ + +E K++ T D S
Sbjct: 75 KFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDS------ 128
Query: 222 LPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFREAHLNRGS 281
G + K L ++ + + ++ DD + NP N +++ P+
Sbjct: 129 ----GSLAQKSLRRLFPC-----DTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDI 178
Query: 282 DRELKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERGGEEEGEE 341
+ R E E +TAL + E+ L + + + + E
Sbjct: 179 NSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHEL 238
Query: 342 EEDE 345
E E
Sbjct: 239 ERLE 242
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 34.8 bits (80), Expect = 0.006
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 21 SKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79
+ TV ++K + G+ PE Q +L AG D+ L L V G +
Sbjct: 35 TGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLEDEATLGQCGVEALTTLEVAGRM 90
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 34.7 bits (80), Expect = 0.007
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKE 65
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond,
metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B
2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A
2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A
1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Length = 76
Score = 34.2 bits (79), Expect = 0.007
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQRE 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 35.2 bits (81), Expect = 0.007
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---WAGKQLEDGRTLSDYNIQRESTL 76
Query: 74 -MVM----GSLEQSIQEASTKPLDIPEIVDD 99
+V+ GS+ + E I + +
Sbjct: 77 HLVLRLRGGSMGGAADEEELIRKAIELSLKE 107
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 102
Score = 35.0 bits (80), Expect = 0.007
Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 20 LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTK-LADTNATDGFKLMVMGS 78
++ + + ++GV E +++ + ++ +DD L DG ++++
Sbjct: 28 VNPDFELSNFRVLCELESGVPAEEAQIV---YMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84
Query: 79 LEQSIQEASTKP 90
++ P
Sbjct: 85 DNVGLRTPGRTP 96
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: d.15.1.1
Length = 107
Score = 34.8 bits (79), Expect = 0.009
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVN---PERQKLLNLKHAGKIPSDDTKLAD 64
I++ E ++ LKQ I + + PE L+ + G+ DD L
Sbjct: 29 ILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI---YCGRKLKDDQTLDF 85
Query: 65 TNATDG 70
G
Sbjct: 86 YGIQPG 91
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 34.4 bits (79), Expect = 0.009
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTL 67
Query: 74 MVMGSL 79
++ L
Sbjct: 68 HLVLRL 73
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 33.9 bits (78), Expect = 0.009
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 1 MGDSLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDD 59
M + L+++++ + + + TV LKQ++ GV + L GK D
Sbjct: 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLEDQ 57
Query: 60 TKLADTNATDG 70
L +
Sbjct: 58 LPLGEYGLKPL 68
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein
binding; 2.60A {Homo sapiens}
Length = 111
Score = 34.8 bits (80), Expect = 0.009
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 14 KEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTL 102
Query: 74 MVMGSL 79
++ L
Sbjct: 103 HLVLRL 108
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 36.2 bits (84), Expect = 0.009
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 14/106 (13%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEF------LTSAYKNYDIAIWSATGMK--- 189
+ + D TL AA+ ++M L ++ L Y+ +S K
Sbjct: 3 RAVFFDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYR 62
Query: 190 ----WIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKY-GVVEV 230
+EE M+ L Y F+ M + Y VVEV
Sbjct: 63 PLRDILEEVMRKLAEKYGFKYPENFWEISLRMSQRYGELYPEVVEV 108
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15,
structure, northeast structural genomics consortium,
protein structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 33.9 bits (78), Expect = 0.010
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 21 SKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79
+ TV LKQ++ GV + L GK D L + + + L
Sbjct: 22 RLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 36.5 bits (83), Expect = 0.010
Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 21/202 (10%)
Query: 160 YELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMKLLGVTVNPNYKIAFYVDYSAMIS 219
Y RP L +FL + Y++ I++ + +E K++ T D S
Sbjct: 81 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDS---- 136
Query: 220 VHLPKYGVVEVKPLGVIWGKFPSLYNPTNTIMFDDIRRNFLMNPRNGLRIRPFRE-AHLN 278
G + K L ++ + + ++ DD + NP N +++ P+ +
Sbjct: 137 ------GSLAQKSLRRLFPC-----DTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIG 184
Query: 279 RGSDRELKRLGRYLDEIATVEDLTALNHRNWEKYLHAKHKERKRARRRAMMNRERGGEEE 338
+ L + ++ + + E + E + ++
Sbjct: 185 DINSNFLAKSTPLPEQEQLIPLEIPKD----EPDSVDEINEENEETPEYDSSNSSYAQDS 240
Query: 339 GEEEEDEGEGSEITGSSDVLME 360
E + + L E
Sbjct: 241 STIPEKTLLKDTFLQNREALEE 262
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 35.9 bits (83), Expect = 0.012
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELM-----RPYLHEFLTSAYKNYDIAIWSATGMKWI-- 191
K++ D+D TL D AE + R L +AY I + G +
Sbjct: 3 KVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSEL-IELIKEYGSNFPYH 61
Query: 192 -EEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKY-GVVEV 230
+ ++ L + NP + A + Y +L + G +V
Sbjct: 62 FDYLLRRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKV 102
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 33.9 bits (77), Expect = 0.016
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGF 71
++ T EL+ +I + G+ K++ K L +
Sbjct: 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQLQLGKTLEEQGVAHNV 84
Query: 72 KLMVMGSLEQS 82
K MV+ L+QS
Sbjct: 85 KAMVL-ELKQS 94
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B,
tubulin folding cofactor B, microtubule, ubiquitin-like
fold, structural genomics; NMR {Mus musculus} SCOP:
d.15.1.1
Length = 95
Score = 33.7 bits (77), Expect = 0.018
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGK----IPSDDTKLADTNA 67
NS + S+S T+ E K ++ G +L K + +D L
Sbjct: 17 NSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPV 76
Query: 68 TDGFKLMVM 76
DG ++ V+
Sbjct: 77 DDGCRIHVI 85
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics,
PSI-2, protein structure initiative; NMR {Drosophila
melanogaster}
Length = 95
Score = 33.0 bits (75), Expect = 0.033
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 20 LSKSNTVLELKQEILKQTGVNPERQKLL---NLKHAGKIPSDDTKLADTNATDGFKLMV 75
L+K TV +LK ++ TG K+ + ++D +L +DG +L V
Sbjct: 34 LAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold,
ubiquitination, ligase; 2.71A {Homo sapiens} PDB:
2lgy_A
Length = 105
Score = 32.7 bits (74), Expect = 0.040
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
++ ++ TV LK + G P Q+ + ++ D L
Sbjct: 35 HTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV---IGQRLARDQETLHS 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution
PSI-2, structural genomics, protein structure
initiative; NMR {Arabidopsis thaliana}
Length = 97
Score = 32.6 bits (74), Expect = 0.042
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 3 DSLNLIIKWNSKEYKTS---LSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPS-- 57
DS++L I + + ++ S +V +K+++ K+ G + L +G +
Sbjct: 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVL 72
Query: 58 --DDTKLADTNATDGFKLMV 75
D L + DGF+L +
Sbjct: 73 SDDSRPLGFFSPFDGFRLHI 92
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66,
peptide binding protein; 1.40A {Saccharomyces
cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Length = 93
Score = 32.2 bits (73), Expect = 0.048
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
++V + K+ + Q G P + L+ G + D L D D L
Sbjct: 41 EDSVGDFKKVLSLQIGTQPNKIV---LQKGGSVLKDHISLEDYEVHDQTNL 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_9
Length = 189
Score = 33.6 bits (76), Expect = 0.056
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLAD 64
+VL+LK +I + G + L+ + G I + + D
Sbjct: 20 GTSVLDLKSQISQDMGFEIDMMTLV---NNGFIAPNTELVTD 58
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 33.1 bits (76), Expect = 0.086
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSA----YKNYDIAIWSATG------- 187
+ L+ D+D T+ D ++A L+ + LT+ YK + +W A
Sbjct: 8 RTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRD 67
Query: 188 ---MKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEV 230
+K G + Y + + G ++
Sbjct: 68 EVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLID--GAFDL 111
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain,
transferase; 1.77A {Homo sapiens}
Length = 94
Score = 31.4 bits (71), Expect = 0.11
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47
+K + NT + + KQT + Q+L+
Sbjct: 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELI 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.11
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 42 ERQKLLNLKHAGKIPSDDT--KLADTNAT 68
E+Q L L+ + K+ +DD+ LA AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-IKAT 45
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 32.7 bits (74), Expect = 0.19
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPS-------DDTKLAD 64
+ + + ++++ + LK + + TG+ E Q+LL + D + D
Sbjct: 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVID 379
Query: 65 TNATDGFKLMVMGSLEQSIQEASTKPLDIPEIVDDFDIEEDQ 106
+G + + +++ E PE V + +
Sbjct: 380 GRQGEGDLIFLF-DNRKTVYEPQISLPAHPESVSIVLQDPKR 420
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP,
oligomerization, ubiquitin insertion, hydrolase binding;
2.17A {Bacillus amyloliquefaciens}
Length = 189
Score = 31.9 bits (72), Expect = 0.19
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKL 73
S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L
Sbjct: 125 SDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTL 172
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Length = 100
Score = 30.8 bits (69), Expect = 0.20
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 13 SKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFK 72
K+ + + +T+ +LK+ I QTG + LK I D L D DG
Sbjct: 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIV---LKKWYTIFKDHVSLGDYEIHDGMN 94
Query: 73 LM 74
L
Sbjct: 95 LE 96
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 30.7 bits (70), Expect = 0.25
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 316 KHKERKRARRRAMMNRERGGEEEGEEEEDE 345
K + + ARR A ++ EE EEE
Sbjct: 87 KLQHKGEARRAATSVKDANFVEEVEEEHHH 116
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 30.4 bits (68), Expect = 0.34
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 1 MGDSLNLIIKWNS-KEYKTSLSKSNTVLELKQEILKQ--------TGVNPERQKLLNLKH 51
D +NL + S K + S +++ ++ + + +P +L+ +
Sbjct: 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---Y 70
Query: 52 AGKIPSDDTKLADTNATDG 70
G+ + L G
Sbjct: 71 QGRFLHGNVTLGALKLPFG 89
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Length = 172
Score = 30.8 bits (69), Expect = 0.42
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
S+T+ +K +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 116 SDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKE 160
Score = 29.3 bits (65), Expect = 1.5
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 4 SLNLIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKL 62
+ + +K K + S+T+ +K +I + G+ P++Q+L+ AGK D L
Sbjct: 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 76
Query: 63 ADTN 66
+D N
Sbjct: 77 SDYN 80
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 30.9 bits (70), Expect = 0.44
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAIWSATGMKWIEEKMK 196
KL+ D+ TL D ++ + + I +K + +
Sbjct: 5 KLVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAV---IEVRNEIKKMRAQAS 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen,
proliferating cell nuclear antigen; replication, DNA
damage, DNA repair; 2.80A {Saccharomyces cerevisiae}
PDB: 3l10_B
Length = 169
Score = 29.9 bits (67), Expect = 0.69
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 21 SKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDGFKLMVMGSL 79
S+T+ +K +I + G+ P++Q+L+ AGK D L+D N L ++ L
Sbjct: 18 ESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A {Homo
sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A
2y5b_B
Length = 152
Score = 30.0 bits (67), Expect = 0.71
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 23 SNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTNATDG 70
S+T+ +K +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 96 SDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYNIQKE 140
Score = 28.8 bits (64), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 7 LIIK-WNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADT 65
+ +K K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDY 59
Query: 66 N 66
N
Sbjct: 60 N 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.73
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 328 MMNRERGGEEEGEEEED 344
MM RE + G +
Sbjct: 1 MMTRESIDKRAGRRGPN 17
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 30.1 bits (68), Expect = 1.2
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 96 IVDDFDIEEDQVAIENKDIYLAKIDKRIQDYQIDILNEP----RPGKKLLVLDIDYTLFD 151
I+D + + +VA+ + ++ ++ + ++ ++D L+VLD+D T
Sbjct: 62 ILDMWKVGRYEVALMDGEL-TSEHETILKALELDYARIQDVPDLTKPGLIVLDMDSTAIQ 120
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 30.2 bits (68), Expect = 1.2
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 12 NSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLL 47
+K + NT + + KQT + Q+L+
Sbjct: 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELI 355
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 29.7 bits (67), Expect = 1.3
Identities = 9/101 (8%), Positives = 27/101 (26%), Gaps = 10/101 (9%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGY-ELMRPY--------LHEFLTSAYKNYDIAIWSATGMK 189
K +++D TL + + ++++ + A +
Sbjct: 4 KAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAMGMINYPDEDGLEHV 63
Query: 190 WIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKYGVVEV 230
++ + +LG+ + L +E
Sbjct: 64 DPKDFLYILGIYPSERLVKELKEADIRDGEAFLYD-DTLEF 103
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin,
fusion protein, fluore protein, transcription; HET: CR2;
1.40A {Aequorea victoria} PDB: 3ako_B*
Length = 307
Score = 29.4 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLNLKHAGKIPSDDTKLADTN 66
+ K + S+T+ +K +I + G+ P++Q+L+ AGK D L+D N
Sbjct: 238 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLSDYN 293
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 105
Score = 28.0 bits (62), Expect = 1.6
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 8 IIKWNSKEYKTSLSKSNTVLELKQEILKQTGVNPERQKLLN------------LKHAG-K 54
+ K + + + ++ TVL+LK+ I + + ER+ + L AG K
Sbjct: 12 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 71
Query: 55 IPSDDTKLADTNATDGFKLM 74
+ D KL D + ++
Sbjct: 72 LTEDRKKLRDYGIRNRDEVS 91
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 29.4 bits (66), Expect = 1.7
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGY-ELMRPY--------LHEFLTSAYKNYDIAIW 183
+LL D+ TL R + Y R + L + AY+ +
Sbjct: 2 RLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFP 55
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 28.7 bits (63), Expect = 2.6
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 134 PRPGKKLLVLDIDYTLFDHRSAAEQGYELMRPYLHEFLTSAYKNYDIAI 182
PG L + D+D TL R + + +FL + I +
Sbjct: 2 AAPGPALCLFDVDGTLTAPRQK-------ITKEMDDFLQKLRQKIKIGV 43
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 28.5 bits (64), Expect = 2.8
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELM---------RPYLHEFLTSAYKNYDIAIWSA 185
K L D+D T++ A +E + + T Y+ + +W
Sbjct: 6 KNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYT-LYQRRNTELWLE 60
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 28.8 bits (64), Expect = 2.8
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 15/107 (14%)
Query: 139 KLLVLDIDYTLFDH----RSAAEQGYELMRPYL---HEFLTSAYKNYDIAIWSATG---- 187
+L+ D D TL+ R+A ++ YL + + G
Sbjct: 14 QLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRNLKIFGYGAK 73
Query: 188 ---MKWIEEKMKLLGVTVNPNYKIAFYVDYSAMISVHLPKY-GVVEV 230
+ IE ++L + A + + GV E
Sbjct: 74 GMTLSMIETAIELTEARIEARDIQRIVEIGRATLQHPVEVIAGVREA 120
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 28.6 bits (64), Expect = 2.8
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLHEF--LTSAYKNYDIAIWSATGMKWIEE 193
+ + D+D TL D A+ +G + L + + +
Sbjct: 19 RAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHP 75
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2,
protein structure initiative, midwest center for STR
genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Length = 237
Score = 28.0 bits (63), Expect = 3.7
Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 15/77 (19%)
Query: 279 RGSDRELKRLGRYLDEIATVEDLTALNHRNWE---------------KYLHAKHKERKRA 323
+L Y++++ D + N + + E +R
Sbjct: 118 LLDADDLAAAASYIEQLEVETDFGQIGRLNRMFHLSLYAKTHNKRLMRLVEEGLNEEERF 177
Query: 324 RRRAMMNRERGGEEEGE 340
R + + G + +
Sbjct: 178 LRFNLSSMGLGKLSQDD 194
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 4.1
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 269 IRPFREAHLNRGSDRELKRLGRYLDEIATV--EDLTALNHRNWEKYLHAKHKERKRARRR 326
IR +RE + KRL + LD + V ++ ++ E++ + + E+ +
Sbjct: 87 IRKWRE--------EQRKRL-QELDAASKVMEQEWREKAKKDLEEW-NQRQSEQVEKNKI 136
Query: 327 AMMNRERGGEEE-GEEEEDE 345
NR ++ ++ + +
Sbjct: 137 N--NRIA--DKAFYQQPDAD 152
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 28.3 bits (63), Expect = 4.2
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 6/57 (10%)
Query: 160 YELMRPYLHEFLTSAYKNYDIAI-----WSATGMKWIEEKMKLLGVT-VNPNYKIAF 210
+ L +N WS K + E + +G K+
Sbjct: 319 LPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKN 375
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 27.7 bits (61), Expect = 5.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 130 ILNEPRPGKKLLVLDIDYTLFDH 152
KL V D+DYTL+
Sbjct: 19 YFQSMARLPKLAVFDLDYTLWPF 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 27.5 bits (62), Expect = 5.8
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 267 LRIRPFREAHLNRGSDRELKRLGRYLDEIA 296
L + E +GR + +A
Sbjct: 145 LALEDTPEIRSALAE--LYLSMGRLDEALA 172
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 27.6 bits (62), Expect = 5.8
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 152 HRSAAEQGYELMRPYLHEFLTSAY-KNYDIAIWSATGMKWIEEKMKLLGVT 201
S E+ L+ P + E + + + + SA+ + +E+ + + +
Sbjct: 85 AISLVEETRPLL-PGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR 134
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic
process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB:
2w11_A
Length = 201
Score = 26.7 bits (59), Expect = 9.8
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 139 KLLVLDIDYTLFDHRSAAEQGYELMRPYLH-EFLTSAYKNYD 179
+L DI T+ D + ++ Y + Y ++
Sbjct: 2 IILAFDIFGTVLDTSTVIQEFRNKQLEYTWLLTIMGKYVEFE 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.388
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,793,135
Number of extensions: 374537
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 149
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)