BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11203
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 89 LLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEM 148
L++DE++ ++ LR++V + P L +A + + + +LL+ A + V E
Sbjct: 13 LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEA 72
Query: 149 EEDKAAGVLHS-----QRALAEVTEMIRTSHLVHKGIVN---ITPGLYSEPVVLNDMTFG 200
++ ++ S QR +AE+TEMI + L+H +++ G+ S VV+ G
Sbjct: 73 LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVM-----G 127
Query: 201 NKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLT 260
NK+++L+GD+LLS +C LAAL+N +V L++ AV L
Sbjct: 128 NKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV--------------------- 166
Query: 261 TKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQG 320
+ + ME ++ + + SL+ SCK L GQ AE+
Sbjct: 167 -------TGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA 219
Query: 321 YQFGKHLALAWQACLDLEPFTSNYA---PGTIFNL----TSAPVMFHLEQ-EKSDELLNE 372
+++G++L LA+Q D+ FT A G++ ++ +AP++F +E+ + E++++
Sbjct: 220 FEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQ 279
Query: 373 INKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423
+ K N+D Y + K G++ ++L +H+ A + E+D
Sbjct: 280 VEKDPR---NVDIALEY--LGKSKGIQRARELAMEHANLAAAAIGSLPETD 325
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 167/350 (47%), Gaps = 52/350 (14%)
Query: 89 LLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEM 148
L++DE++ ++ LR++V + P L +A + + + +LL+ A + V E
Sbjct: 13 LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEA 72
Query: 149 EEDKAAGVLHS-----QRALAEVTEMIRTSHLVHKGIVN---ITPGLYSEPVVLNDMTFG 200
++ ++ S QR +AE+TEMI + L+H +++ G+ S VV+ G
Sbjct: 73 LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVM-----G 127
Query: 201 NKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLT 260
NK+++L+GD+LLS +C LAAL+N +V L++ AV L E + +T
Sbjct: 128 NKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME-------------IT 174
Query: 261 TKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQG 320
+ T+ S+D + + SL+ SCK L GQ AE+
Sbjct: 175 SSTAA------RYSMDY---------YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA 219
Query: 321 YQFGKHLALAWQACLDLEPFTSNYAP---GTIFNL----TSAPVMFHLEQEKSDELLNEI 373
+++G++L LA+Q D+ FT A G++ ++ +AP++F +E+ +L +
Sbjct: 220 FEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEE--FPQLREVV 277
Query: 374 NKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423
++ N+D Y + K G++ ++L +H+ A + E+D
Sbjct: 278 DQVAADPRNVDIALEY--LGKSKGIQRARELAMEHANLAAAAIGSLPETD 325
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 123 RNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVN 182
RN ++VLL+++ G + LH+ +L E++ T+ LVH +V+
Sbjct: 45 RNGKMMRPILVLLVARLYGAVT---------PATLHAAVSL----ELLHTASLVHDDVVD 91
Query: 183 ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESE 242
+ + V + F NK+++L+GDYLL+ S N ++ L+S + L E E
Sbjct: 92 ESTERRGQLSV--NAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGE 149
Query: 243 FLGRRDLQNNPLPPQ 257
L ++ N+ +
Sbjct: 150 LLQLSNVSNHSFSEE 164
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 148 MEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLS 207
+ E A +L L + EMI+T+ L+H +++ P + + FGN A++
Sbjct: 47 LNEKTDAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSI--NALFGNFNAVML 104
Query: 208 GDYLLSNSCSELAALRNQHLVELMSGAVRDLTESE 242
GD S + EL+ + + + + +S AV L+ E
Sbjct: 105 GDVFYSKAFFELSKM-GELIAQALSNAVLRLSRGE 138
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 91 SDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWG-----LIVLLISKAAGHLNV 145
SD+I + H++ LV +HPL+K +++ + + + + +LL +A HL
Sbjct: 3 SDKIHHHHHHMKNLVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKC 62
Query: 146 DEMEED----KAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITP-------GLYSEPVVL 194
+E+E + K G + + + V ++R ++ GI+ + P G+Y +P L
Sbjct: 63 EEVEVETPITKTIGYRINDKDIV-VVPILRAGLVMADGILELLPNASVGHIGIYRDPETL 121
Query: 195 NDMTFGNKIALLSGD 209
+ + K+ L+ D
Sbjct: 122 QAVEYYAKLPPLNDD 136
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 164 AEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAA 221
A EMI T L+H + + N M FG +A+L+GD LLS + +AA
Sbjct: 69 ACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAA 126
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 63 RPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIAN 96
RPD + V+E +GYPT L+ R LLS E+AN
Sbjct: 257 RPDVAKQVAET---IGYPTPNLAARKLLSPEVAN 287
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 63 RPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIAN 96
RPD + V+E +GYPT L+ R LLS E+AN
Sbjct: 255 RPDVAKQVAET---IGYPTPNLAARKLLSPEVAN 285
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNM 126
F +L+W++S+ AN+A H K GS LK K L + G +++
Sbjct: 398 FPALQWVVSENDANIAWHFDKSQGS---YLKGGKVLFWYGIDDI 438
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL 222
+A E+ T+ L+H + I + T+G IALL+GD L + S+++ +
Sbjct: 71 VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI 130
Query: 223 RNQHLVELMS 232
N + E S
Sbjct: 131 GNSXIFEEFS 140
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 384 DYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNI 431
DY K Y +V GPG+ ++ L + Q +K+L+ KE + AL NI
Sbjct: 419 DYAKYYALVCYGPGIPIST-LHDGRTDQEIKILEENKELE--NALKNI 463
>pdb|1JKU|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKV|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
Length = 266
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 209 DYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDS 268
D LL E+A VE++S + L E G DL+ +P TT D
Sbjct: 57 DLLLDTGTEEMAH------VEMISTMIGYLLEDAPFGPEDLKRDP---SLATTMAGMDPE 107
Query: 269 NQIMESLDELPMTPALADWTTRNVLSAGSLL 299
+ ++ L+ P A W V S+G+L+
Sbjct: 108 HSLVHGLNASLNNPNGAAWNAGYVTSSGNLV 138
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 108/280 (38%), Gaps = 53/280 (18%)
Query: 168 EMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHL 227
E++ + LVH ++ + V + F A+ +G +LL+ + +A + N
Sbjct: 74 ELVHMASLVHDDYIDNSDMRRGNTSV--HIAFDKDTAIRTGHFLLARALQNIATINNSKF 131
Query: 228 VELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADW 287
++ S + ++ EF D N P+ + +
Sbjct: 132 HQIFSKTILEVCFGEFDQMADRFNYPV----------------------------SFTAY 163
Query: 288 TTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGY----QFGKHLALAWQACLDLEPFTSN 343
R L+ SC L ++L EQ QFG + +++Q D+ +TS+
Sbjct: 164 LRRINRKTAILIEASC----HLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSD 219
Query: 344 YAP------GTIFN-LTSAPVMFHLE--QEKSDELLNEINKGTESVTNIDYKKVYN-IVS 393
A I N + P+M + +E+ D+ L + K S ++ +VY IVS
Sbjct: 220 EATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSD---DEVYQYIVS 276
Query: 394 --KGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNI 431
K G+ + L +++ +A L ++S+ + L I
Sbjct: 277 QVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEI 316
>pdb|1O9I|A Chain A, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|B Chain B, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|C Chain C, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|D Chain D, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|E Chain E, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|F Chain F, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
Length = 266
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 209 DYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDS 268
D LL E+A VE++S + L E G DL+ +P TT D
Sbjct: 57 DLLLDTGTEEMAH------VEMISTMIGYLLEDAPFGPEDLKRDP---SLATTMAGMDPE 107
Query: 269 NQIMESLDELPMTPALADWTTRNVLSAGSLL 299
+ ++ L+ P A W V S+G+L+
Sbjct: 108 HSLVHGLNASLNNPNGAAWNAGYVTSSGNLV 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,464,650
Number of Sequences: 62578
Number of extensions: 440860
Number of successful extensions: 1038
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 21
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)