Query psy11203
Match_columns 438
No_of_seqs 253 out of 1585
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:47:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 5.7E-65 1.2E-69 522.7 40.8 319 83-437 81-419 (422)
2 PLN02857 octaprenyl-diphosphat 100.0 2.1E-64 4.6E-69 518.7 37.0 316 80-437 91-413 (416)
3 TIGR02749 prenyl_cyano solanes 100.0 4.7E-64 1E-68 504.1 38.5 310 83-437 3-319 (322)
4 KOG0776|consensus 100.0 8.2E-65 1.8E-69 506.5 32.1 328 60-437 38-383 (384)
5 TIGR02748 GerC3_HepT heptapren 100.0 1.7E-63 3.6E-68 499.8 38.1 305 85-437 4-316 (319)
6 PRK10888 octaprenyl diphosphat 100.0 1.4E-62 3E-67 493.4 39.1 309 84-437 4-320 (323)
7 CHL00151 preA prenyl transfera 100.0 1.8E-62 3.9E-67 493.1 37.2 307 86-437 7-320 (323)
8 COG0142 IspA Geranylgeranyl py 100.0 2E-61 4.2E-66 485.1 35.8 304 86-437 3-319 (322)
9 PRK10581 geranyltranstransfera 100.0 3.4E-54 7.3E-59 428.3 32.5 269 86-437 3-296 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 6.1E-49 1.3E-53 383.8 30.4 245 109-437 3-258 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 1.3E-49 2.8E-54 388.8 18.6 248 111-405 1-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.5E-37 3.2E-42 298.0 27.3 225 128-436 1-234 (236)
13 KOG0777|consensus 100.0 1.4E-31 3E-36 248.6 20.8 265 114-429 25-299 (322)
14 KOG0711|consensus 99.9 6.4E-24 1.4E-28 206.2 24.7 287 111-435 39-342 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 7E-22 1.5E-26 185.2 27.4 224 161-435 13-241 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.9 0.00034 7.4E-09 66.5 14.2 80 158-244 33-112 (212)
17 PF00494 SQS_PSY: Squalene/phy 96.0 0.21 4.6E-06 48.7 14.7 146 230-427 88-233 (267)
18 TIGR01559 squal_synth farnesyl 95.7 0.24 5.2E-06 50.6 14.0 153 225-425 100-252 (336)
19 cd00683 Trans_IPPS_HH Trans-Is 95.7 1.5 3.2E-05 43.0 19.2 134 233-421 93-226 (265)
20 TIGR03465 HpnD squalene syntha 94.4 1.2 2.6E-05 43.7 14.3 134 233-422 85-218 (266)
21 PLN02632 phytoene synthase 94.1 1 2.2E-05 46.0 13.6 137 233-422 140-279 (334)
22 TIGR03464 HpnC squalene syntha 93.0 3.8 8.2E-05 40.2 15.0 114 283-422 106-219 (266)
23 cd00687 Terpene_cyclase_nonpla 91.5 9.4 0.0002 37.7 16.0 92 224-344 127-222 (303)
24 COG1562 ERG9 Phytoene/squalene 64.5 1.4E+02 0.003 29.9 12.8 137 232-423 102-238 (288)
25 PF06783 UPF0239: Uncharacteri 52.4 18 0.00039 29.5 3.3 24 314-337 15-38 (85)
26 PF03936 Terpene_synth_C: Terp 50.7 2.2E+02 0.0048 27.0 11.5 90 227-343 138-230 (270)
27 cd00868 Terpene_cyclase_C1 Ter 36.8 3.8E+02 0.0083 25.6 21.5 91 226-344 122-216 (284)
28 cd00684 Terpene_cyclase_plant_ 34.9 6.3E+02 0.014 27.5 17.3 107 223-362 353-465 (542)
29 PRK09573 (S)-2,3-di-O-geranylg 33.9 4.6E+02 0.01 25.6 12.4 56 163-220 42-100 (279)
30 PRK12882 ubiA prenyltransferas 30.7 5.1E+02 0.011 25.2 13.0 60 162-222 42-103 (276)
31 PRK12884 ubiA prenyltransferas 27.7 5.7E+02 0.012 24.8 15.0 55 162-217 41-97 (279)
32 PF11676 DUF3272: Protein of u 25.1 1.3E+02 0.0027 23.1 3.9 34 202-235 20-55 (61)
33 KOG1345|consensus 23.4 44 0.00095 33.6 1.4 21 160-180 127-147 (378)
34 PRK12871 ubiA prenyltransferas 23.2 7.6E+02 0.016 24.7 12.1 30 327-360 187-216 (297)
35 PF09316 Cmyb_C: C-myb, C-term 22.9 3E+02 0.0064 25.4 6.6 94 43-138 47-147 (167)
36 PRK10581 geranyltranstransfera 21.1 4.3E+02 0.0094 26.4 8.1 62 160-223 205-278 (299)
37 PRK12872 ubiA prenyltransferas 20.7 1.7E+02 0.0037 28.6 5.1 32 327-362 173-204 (285)
38 KOG2802|consensus 20.7 2.9E+02 0.0062 28.9 6.6 47 294-343 370-416 (503)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=5.7e-65 Score=522.69 Aligned_cols=319 Identities=26% Similarity=0.407 Sum_probs=281.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCC--CCcchHHHHHHHHHHHhCCCCcchhhHH-----hhhc
Q psy11203 83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGR--NNMQAWGLIVLLISKAAGHLNVDEMEED-----KAAG 155 (438)
Q Consensus 83 ~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~g--kklr~RplLvLL~s~a~g~~~~~~~~~~-----~~~~ 155 (438)
...++.++.++++.|+..|++.+.+..|.+..+..|++..| || |+||+|++++++++|... ++..++ ...+
T Consensus 81 ~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GK-rlRP~LvLL~a~a~g~~~-~~~~~~~~~~~~~~~ 158 (422)
T PLN02890 81 QLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGK-RFRPTVLLLMATALNVPL-PESTEGGVLDIVASE 158 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCc-cHhHHHHHHHHHHcCCCc-ccccccccchhhccc
Confidence 45567789999999999999999999999999988877554 55 999999999999988641 100000 0012
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Q psy11203 156 VLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAV 235 (438)
Q Consensus 156 i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i 235 (438)
+.++++.+|+++||||+||||||||||+++ +|||+ ||+|.+|||++|||+||||+++|+..+++.+++++++.+++++
T Consensus 159 ~~~~~~~~AaavEliH~ASLVHDDIiD~s~-~RRG~-pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~ 236 (422)
T PLN02890 159 LRTRQQNIAEITEMIHVASLLHDDVLDDAD-TRRGV-GSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAV 236 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcccccCCC-CcCCC-cChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 346789999999999999999999999999 99999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH
Q psy11203 236 RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAE 315 (438)
Q Consensus 236 ~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~ 315 (438)
.++++||++|+.+..+. +.++++|++++++|||+||+.||++||+++|++++
T Consensus 237 ~~l~~Gq~ld~~~~~~~----------------------------~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~ 288 (422)
T PLN02890 237 EHLVTGETMQITSSREQ----------------------------RRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAE 288 (422)
T ss_pred HHHHHHHHHHHHhccCC----------------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHH
Confidence 99999999999875432 25889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHH
Q psy11203 316 LQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKV 388 (438)
Q Consensus 316 ~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i 388 (438)
..+.+++||++||+||||+||++||++++ +.|.| +||+|+|++++++..+ ++.+++.+.. .++++++++
T Consensus 289 ~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~--~l~~~l~~~~--~~~~~v~~~ 364 (422)
T PLN02890 289 VAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFP--QLREVVDRGF--DNPANVDIA 364 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCH--HHHHHHhccc--CCHHHHHHH
Confidence 99999999999999999999999999984 34666 4999999999998766 6777776654 467899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch------HHHHHHHHHHHHhh
Q psy11203 389 YNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD------ARTALSNIIVAMGS 437 (438)
Q Consensus 389 ~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~------ar~~L~~l~~~v~~ 437 (438)
+++|.++||+++|++++++|.++|++.|+.||+++ +|+.|..+++++.+
T Consensus 365 ~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~ 419 (422)
T PLN02890 365 LEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVIT 419 (422)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 79999999998864
No 2
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=2.1e-64 Score=518.68 Aligned_cols=316 Identities=25% Similarity=0.428 Sum_probs=284.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHH
Q psy11203 80 PTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHS 159 (438)
Q Consensus 80 p~s~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~ 159 (438)
|+++..+...+.+++..|+++|++.+.+.+|.+.++..|+...||| |+||+|++++++++|...- . .+..++
T Consensus 91 ~~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK-riRP~Lvll~a~a~g~~~g--~-----~~~~~~ 162 (416)
T PLN02857 91 PISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGK-RMRPALVFLVSRATAELAG--L-----KELTTE 162 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCc-cHhHHHHHHHHHHhccccC--C-----CcchHH
Confidence 6888899999999999999999999999999999987776655555 9999999999999864200 0 011367
Q ss_pred HHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Q psy11203 160 QRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLT 239 (438)
Q Consensus 160 ~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~ 239 (438)
.+.+|+++||||+||||||||||+++ +|||+ ||+|.+||+++|||+|||||++|+..+++++++++++.+++++.+++
T Consensus 163 ~~~lAaaiEliH~ASLIHDDI~D~s~-~RRG~-pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~ 240 (416)
T PLN02857 163 HRRLAEITEMIHTASLIHDDVLDESD-MRRGK-ETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFA 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHHCccccCCc-ccCCC-CCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999 99999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy11203 240 ESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQ 319 (438)
Q Consensus 240 ~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~ 319 (438)
+||++|+.+..+. +.++++|++++++|||+||+.+|++|++++|++++.++.
T Consensus 241 ~Gei~q~~~~~~~----------------------------~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~ 292 (416)
T PLN02857 241 SGEIKQASSLFDC----------------------------DVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ 292 (416)
T ss_pred hhHHHHHhcccCC----------------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999998765332 257899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 320 GYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 320 l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
+++||++||+||||+||++||++++ +.|.| +||+|+|++|+++..| ++.+++.+.. .+++++++++++|
T Consensus 293 l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~~~~--~l~~~l~~~~--~~~~~~~~~~~lv 368 (416)
T PLN02857 293 MYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKEP--ELREIIESEF--CEEGSLEEAIELV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHhcCh--HHHHHHhhcc--CCHHHHHHHHHHH
Confidence 9999999999999999999999983 45667 4999999999999876 7788887654 4678999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++||+++|++++++|.++|++.|+.||+++.++.|..+++++.+
T Consensus 369 ~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~~~~~L~~L~~~~~~ 413 (416)
T PLN02857 369 NEGGGIERAQELAKEKADLAIQNLECLPRGAFRSSLEDMVDYNLE 413 (416)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999864
No 3
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=4.7e-64 Score=504.08 Aligned_cols=310 Identities=29% Similarity=0.428 Sum_probs=277.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 83 ~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
...+...+.+++.+|+.++.+.+.+.+|.+..+..|+...||| |+||+||+++++++|... +..+..+.
T Consensus 3 ~~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK-rlRp~l~ll~~~~~~~~~----------~~~~~~~~ 71 (322)
T TIGR02749 3 ATSLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAGGK-RLRPAIVLLVSRATAEQQ----------ELTPRHRR 71 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCCCc-hHHHHHHHHHHHHcCCCc----------cccHHHHH
Confidence 3456778899999999999999999999999887665544444 999999999999987541 11257789
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESE 242 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge 242 (438)
+|+++||||+||||||||||+++ +|||+ ||+|.+||+++|||+||||+++|+..+++++++++++.+++++.++++||
T Consensus 72 ~A~avEliH~asLiHDDiiD~s~-~RRG~-pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq 149 (322)
T TIGR02749 72 LAEITEMIHTASLVHDDVIDESD-TRRGI-ETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGE 149 (322)
T ss_pred HHHHHHHHHHHHHHHcccccCcc-ccCCC-ccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy11203 243 FLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQ 322 (438)
Q Consensus 243 ~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~ 322 (438)
++|..+..+. +.++++|++++.+|||+||+.||++|++++|++++.++.+++
T Consensus 150 ~~~~~~~~~~----------------------------~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~ 201 (322)
T TIGR02749 150 IKQGLNQFDS----------------------------DLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYE 201 (322)
T ss_pred HHHHHcccCC----------------------------CCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 9998764332 248899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q psy11203 323 FGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKG 395 (438)
Q Consensus 323 fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~s 395 (438)
||+++|+||||+||++||++++ +.|.| +||+|+|++++++..| ++.+++.+.. .++.++++++++|.++
T Consensus 202 ~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~--~~~~~l~~~~--~~~~~~~~~~~~i~~~ 277 (322)
T TIGR02749 202 YGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEEP--KLSELIEREF--SQKGDLEQALSLVRKS 277 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhcCh--HHHHHHHhcc--CCHHHHHHHHHHHHHC
Confidence 9999999999999999999974 34666 4999999999998766 6677776654 4678999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 396 PGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 396 g~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|++++|++++++|.++|++.|+.||++++|+.|.++++++.+
T Consensus 278 ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 319 (322)
T TIGR02749 278 GGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVLS 319 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998864
No 4
>KOG0776|consensus
Probab=100.00 E-value=8.2e-65 Score=506.53 Aligned_cols=328 Identities=34% Similarity=0.449 Sum_probs=282.8
Q ss_pred CCCCCchHHHHHHhhhhcCCCCchHHHH------HHHHHHHHHHHHHHHHHhCCC-CchHH-HHH-HHHHcCCCCcchHH
Q psy11203 60 NTNRPDWNRAVSEAEKIVGYPTSFLSLR------WLLSDEIANVALHLRKLVGSN-HPLLK-TAK-SLLYNGRNNMQAWG 130 (438)
Q Consensus 60 ~~~~~~~~~~v~~a~k~v~~p~s~~~l~------~ll~~el~~v~~~l~~~l~s~-~p~l~-~a~-~~~~~~gkklr~Rp 130 (438)
.+....|+...+++ |+||+.|...+ +.+..+++.|...+...+... +|... .+. +++..+|| |+||
T Consensus 38 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gK--r~rP 112 (384)
T KOG0776|consen 38 LKVAAVLSSASSEA---VGPPTSFLSLRLLFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGK--RVRP 112 (384)
T ss_pred cccchhhhhhhccc---cCCcchhhcchhhhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhccc--ccCc
Confidence 45777999988777 99999887655 334445555555555666554 55444 455 44556664 9999
Q ss_pred HHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHH
Q psy11203 131 LIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSG 208 (438)
Q Consensus 131 lLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaG 208 (438)
++|+++++++|.. +...|+++|+++||||+|||||||| ||+++ +|||+ ||.|+.||||+|||+|
T Consensus 113 ~l~~~~~e~~~~g------------~~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d-~RRGk-pt~h~vfG~k~AvLaG 178 (384)
T KOG0776|consen 113 LLCLAACELVGSG------------DESSQRSLAEIVEMIHTASLIHDDVPCMDDAD-LRRGK-PTNHKVFGNKMAVLAG 178 (384)
T ss_pred hhhhhHHHhcccc------------ccHHHHHHHHHHHHHHHHHHHhcCcccccccc-cccCC-CCcchhhcchhhhhhh
Confidence 9999999999832 2478999999999999999999999 99999 99999 9999999999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHH
Q psy11203 209 DYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWT 288 (438)
Q Consensus 209 D~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl 288 (438)
||||++|+..++.+.|+.++++|+++|.++++|+|+|....+..- | ..+..+++|.
T Consensus 179 D~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~------------d------------~~~~~~e~~e 234 (384)
T KOG0776|consen 179 DALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGL------------D------------LDDVGLEYLE 234 (384)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhccccccccc------------c------------cCCcchHHHH
Confidence 999999999999999999999999999999999999988753110 0 0124789999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCC--CCChHHHHHHh
Q psy11203 289 TRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHL 361 (438)
Q Consensus 289 ~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al 361 (438)
.++++|||+|+++||++|++++|+++++++.+++||+|||++||++||++||+... +.|.|+ |+.|+|+||++
T Consensus 235 ~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~ 314 (384)
T KOG0776|consen 235 FKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFAL 314 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999874 346674 99999999999
Q ss_pred ccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 362 EQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 362 ~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++.| ++.+.|.+.+. ++.++++..+.+. ++..|+.++++|.++|++.|+.||++++|++|++|+.++.+
T Consensus 315 e~~p--e~~e~l~~~~~--e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~l~~~~~~ 383 (384)
T KOG0776|consen 315 EKSP--ELREKLEREFS--EPLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSEARSALENLVLAVLT 383 (384)
T ss_pred hhCh--HHHHHHHHhcc--ccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 9999 89999988773 5678888888887 99999999999999999999999999999999999999875
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=1.7e-63 Score=499.82 Aligned_cols=305 Identities=20% Similarity=0.319 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH-HcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHH
Q psy11203 85 SLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLL-YNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRAL 163 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~-~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~l 163 (438)
.+...+.++++.|+.+|++.+.+.+|.+.++..|+ ..||| |+||+|++++++++|.. .+..+++
T Consensus 4 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK--riRp~L~ll~~~~~~~~-------------~~~~~~~ 68 (319)
T TIGR02748 4 DIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAGGK--RIRPVFVLLAGKFGDYD-------------LDAIKHV 68 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcCCc--hHHHHHHHHHHHHcCCC-------------HHHHHHH
Confidence 35667899999999999999998888888875554 55555 99999999999987755 2577899
Q ss_pred HHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Q psy11203 164 AEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEF 243 (438)
Q Consensus 164 A~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~ 243 (438)
|+++||||+||||||||||+++ +|||+ ||+|.+||+++||++||||+++|++.+++++++++++.+++++.++++||+
T Consensus 69 A~aiEliH~asLiHDDI~D~s~-~RRg~-pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~ 146 (319)
T TIGR02748 69 AVALELIHMASLVHDDVIDDAD-LRRGR-PTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEI 146 (319)
T ss_pred HHHHHHHHHHHHHhccccCCCC-CCCCC-cCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999 999999999999999999999999999999889999999999999999999
Q ss_pred hhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy11203 244 LGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQF 323 (438)
Q Consensus 244 lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~f 323 (438)
+|+.+..+. +.++++|++++++|||+||+.||++|++++|++++.++.+++|
T Consensus 147 ~~~~~~~~~----------------------------~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~ 198 (319)
T TIGR02748 147 EQIKDKYNF----------------------------DQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWF 198 (319)
T ss_pred HHHHhccCC----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999765332 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCC
Q psy11203 324 GKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGP 396 (438)
Q Consensus 324 G~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg 396 (438)
|+++|+||||+||++||++++ |.|.| .||+|+|++|+++..+.+.....+.+. .++.++++++++|+++|
T Consensus 199 g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~---~~~~~~~~~~~~i~~~g 275 (319)
T TIGR02748 199 GYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEE---TTAEEMEPLIEEVKKSD 275 (319)
T ss_pred HHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcC---CCHHHHHHHHHHHHHcC
Confidence 999999999999999999973 34666 499999999999864422222222222 36789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 397 GMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 397 ~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++|+.++++|.++|++.|+.||++++++.|.++++++.+
T Consensus 276 ~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 316 (319)
T TIGR02748 276 AIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIGK 316 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999864
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=1.4e-62 Score=493.40 Aligned_cols=309 Identities=19% Similarity=0.273 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHH
Q psy11203 84 LSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRAL 163 (438)
Q Consensus 84 ~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~l 163 (438)
..+...+..+++.|++.|.+.+.+..|.++.+..|+...||| |+||+|++++++++|.. .+..+++
T Consensus 4 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~GK-rlRp~l~ll~~~~~g~~-------------~~~~~~~ 69 (323)
T PRK10888 4 EKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGGGK-RIRPMIAVLAARAVGYQ-------------GNAHVTI 69 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCC-------------hHHHHHH
Confidence 345667899999999999999999899999998887755555 99999999999998865 1567899
Q ss_pred HHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Q psy11203 164 AEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEF 243 (438)
Q Consensus 164 A~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~ 243 (438)
|+++||||+||||||||||+++ +|||+ ||+|.+||+++|||+||||+++|++.+++++++++++.+++++..+++||+
T Consensus 70 A~avEllH~asLiHDDI~D~s~-~RRG~-pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~ 147 (323)
T PRK10888 70 AALIEFIHTATLLHDDVVDESD-MRRGK-ATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEV 147 (323)
T ss_pred HHHHHHHHHHHHHHcccccCCc-ccCCC-CCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy11203 244 LGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQF 323 (438)
Q Consensus 244 lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~f 323 (438)
+|+.+..+. +.++++|++++.+|||+||+.||++|++++|++++.++.+++|
T Consensus 148 ~d~~~~~~~----------------------------~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~ 199 (323)
T PRK10888 148 LQLMNVNDP----------------------------DITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDY 199 (323)
T ss_pred HHHHhccCC----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999764321 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCC-----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCC-CCCHHHHHHHHHHHHcC
Q psy11203 324 GKHLALAWQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTE-SVTNIDYKKVYNIVSKG 395 (438)
Q Consensus 324 G~~LGiAFQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~-~~~~~d~~~i~~~v~~s 395 (438)
|+++|+||||+||++||++++ +.|.|+ ||+|+|++++++..+. +..+.+..... ...+.++++++++|.++
T Consensus 200 g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 278 (323)
T PRK10888 200 GRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTP-EQAAMIRTAIEQGNGRHLLEPVLEAMNAC 278 (323)
T ss_pred HHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999983 457774 9999999999986331 22222222111 12357899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 396 PGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 396 g~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+++++++++++|.++|++.|+.||++++|+.|..+++++.+
T Consensus 279 g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 320 (323)
T PRK10888 279 GSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQ 320 (323)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998864
No 7
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.8e-62 Score=493.15 Aligned_cols=307 Identities=30% Similarity=0.430 Sum_probs=274.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAE 165 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~ 165 (438)
+...+.+++..|+..|.+.+.+.+|.+.++..|+...||| |+||+||+++++++|+.. .+...++.+|+
T Consensus 7 ~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~gGK-r~Rp~L~ll~~~~~~~~~----------~~~~~~~~~A~ 75 (323)
T CHL00151 7 LLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAGGK-RIRPAIVLLVAKATGGNM----------EIKTSQQRLAE 75 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcCCc-cHHHHHHHHHHHHcCCCc----------cccHHHHHHHH
Confidence 4557889999999999999999999999887666555555 999999999999988741 11246788999
Q ss_pred HHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11203 166 VTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLG 245 (438)
Q Consensus 166 avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lq 245 (438)
++||||+||||||||||+++ +|||+ ||+|.+||+++|||+||||+++|+..+++.+++++++.+++++.++++||++|
T Consensus 76 aiEllH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~ 153 (323)
T CHL00151 76 ITEIIHTASLVHDDVIDECS-IRRGI-PTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQ 153 (323)
T ss_pred HHHHHHHHHHHHcccccCcc-ccCCC-ccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999 99999999999999999999999999999988899999999999999999999
Q ss_pred hhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy11203 246 RRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGK 325 (438)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~ 325 (438)
.....+. +.+.++|++++++|||+||+.||++|++++|++++.++.+++||+
T Consensus 154 ~~~~~~~----------------------------~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~ 205 (323)
T CHL00151 154 GLVQFDT----------------------------TLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGK 205 (323)
T ss_pred HhcCCCC----------------------------CCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7653221 257899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCC-----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChH
Q psy11203 326 HLALAWQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGM 398 (438)
Q Consensus 326 ~LGiAFQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~i 398 (438)
++|+||||+||++||++++ +.|.|+ ||+|+|++++++..+ ++.+++.+.. .++.++++++++|.++|++
T Consensus 206 ~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~~~--~~~~~l~~~~--~~~~~~~~~~~~l~~~g~~ 281 (323)
T CHL00151 206 HLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQNS--KLAKLIEREF--CETKDISQALQIIKETNGI 281 (323)
T ss_pred HHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhcCh--HHHHHHHHhc--CCHHHHHHHHHHHHHCCcH
Confidence 9999999999999999984 346664 999999999998766 6667776544 4678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 399 RLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 399 e~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++|++++++|.++|++.|+.||+++.++.|..+++++.+
T Consensus 282 ~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 320 (323)
T CHL00151 282 EKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIIN 320 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999864
No 8
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2e-61 Score=485.12 Aligned_cols=304 Identities=24% Similarity=0.295 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHc-CCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVG-SNHPLLKTAKSLLYN-GRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRAL 163 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~-s~~p~l~~a~~~~~~-~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~l 163 (438)
+...+.++++.|+..|.+.+. +.++.+.++..|+.. ||| |+||++++++++++|... . .+ .+....+
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGK--rlRP~l~l~~~~~~~~~~------~--~~-~~~~~~~ 71 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGK--RLRPLLVLLAAEALGIDL------E--TG-GNDALDL 71 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCc--cHhHHHHHHHHHHcCCCc------c--cc-hhhHHHH
Confidence 345678999999999999999 788888888766554 555 999999999999998331 0 01 2578999
Q ss_pred HHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHHHHH
Q psy11203 164 AEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN--QHLVELMSGAVRDLTES 241 (438)
Q Consensus 164 A~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~--~~v~~~~s~~i~~l~~G 241 (438)
|+++||||++|||||||||+|+ +|||+ ||+|..||+.+|||+||||+++||.++++.++ +.+++.+++++..||+|
T Consensus 72 aaavEliH~~SLiHDDvmD~s~-~RRG~-pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~G 149 (322)
T COG0142 72 AAAIELIHTASLIHDDLMDDDD-LRRGK-PTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGG 149 (322)
T ss_pred HHHHHHHHHHHHHHhhcccCCC-ccCCC-CCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 99999 99999999999999999999999999999998 89999999999999999
Q ss_pred HHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy11203 242 EFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGY 321 (438)
Q Consensus 242 e~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~ 321 (438)
|++|+.+..+. .++++|++++++|||+||+.+|++||+++|++++..+.++
T Consensus 150 Q~lDl~~~~~~-----------------------------~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~ 200 (322)
T COG0142 150 QALDLAFENKP-----------------------------VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALE 200 (322)
T ss_pred HHHHHHccCCC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999986442 4889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCcc-HH-HHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 322 QFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKS-DE-LLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 322 ~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~-~~-l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
+||+++|+||||+||+|||+++. +.|.| +||.|+|++++++..+. .. ++..+.+ .. +++++++++
T Consensus 201 ~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~----~~--~~~~~~~~~ 274 (322)
T COG0142 201 DYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEG----GG--EVEEALELL 274 (322)
T ss_pred HHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhc----ch--HHHHHHHHH
Confidence 99999999999999999999984 45767 49999999999998542 12 2222221 12 999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++|+++++...++.|.++|++.|+.+|++++++.|..+++++.+
T Consensus 275 ~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~~i~~ 319 (322)
T COG0142 275 RKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELADFIIK 319 (322)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=3.4e-54 Score=428.32 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHH-HHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSL-LYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQR 161 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~-~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~ 161 (438)
+...++..+..|++.|.+.+.+. ++.+.++..| +..||| |+||+|++++++++|.. .+...
T Consensus 3 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGK--rlRp~L~l~~~~~~g~~-------------~~~~~ 67 (299)
T PRK10581 3 FPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGK--RLRPFLVYATGQMFGVS-------------TNTLD 67 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcc--cHHHHHHHHHHHHhCCC-------------HHHHH
Confidence 34456778888999999988652 4556666555 445555 99999999999998865 14667
Q ss_pred HHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcH--------HHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQ--------HLVELM 231 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~--------~v~~~~ 231 (438)
++|+++||||+|||||||| ||+|+ +|||+ ||+|.+||+.+|||+||||++.|+..+++...+ ++++.+
T Consensus 68 ~~A~avEliH~aSLiHDDip~~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (299)
T PRK10581 68 APAAAVECIHAYSLIHDDLPAMDDDD-LRRGL-PTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISEL 145 (299)
T ss_pred HHHHHHHHHHHHHHHHcCcccccCCC-ccCCC-cChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHH
Confidence 8999999999999999999 99999 99999 999999999999999999999999999876432 345556
Q ss_pred HHH--HHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy11203 232 SGA--VRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKL 309 (438)
Q Consensus 232 s~~--i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gail 309 (438)
+.+ +..|++||++|+.+..+ ..++++|++++++|||+||+.||++|+++
T Consensus 146 ~~~~~~~~l~~GQ~ld~~~~~~-----------------------------~~~~~~y~~i~~~KTa~L~~~~~~~gail 196 (299)
T PRK10581 146 ASASGIAGMCGGQALDLEAEGK-----------------------------QVPLDALERIHRHKTGALIRAAVRLGALS 196 (299)
T ss_pred HHhcccchhhHhhHHHHhccCC-----------------------------CCCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 664 56899999999976432 14789999999999999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCC
Q psy11203 310 AGQDA-ELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVT 381 (438)
Q Consensus 310 ag~~~-~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~ 381 (438)
+|.++ +.++.+++||+++|+||||+||++||++++ +.|.| +||.|+|+++++
T Consensus 197 ag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~-------------------- 256 (299)
T PRK10581 197 AGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGL-------------------- 256 (299)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHH--------------------
Confidence 99864 578999999999999999999999999983 35666 499999999854
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchH-HHHHHHHHHHHhh
Q psy11203 382 NIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDA-RTALSNIIVAMGS 437 (438)
Q Consensus 382 ~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~a-r~~L~~l~~~v~~ 437 (438)
+++++++++|.++|++.|+.+|+++. ++.|..+++++.+
T Consensus 257 -----------------e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~ 296 (299)
T PRK10581 257 -----------------EQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQ 296 (299)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHh
Confidence 46778999999999999999998765 7889999999864
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=6.1e-49 Score=383.78 Aligned_cols=245 Identities=28% Similarity=0.364 Sum_probs=219.4
Q ss_pred CchHHHHHHHH-HcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCC
Q psy11203 109 HPLLKTAKSLL-YNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGL 187 (438)
Q Consensus 109 ~p~l~~a~~~~-~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~ 187 (438)
++.+.++..|. ..+|| |+||+|++++++++|... .+....+|+++|+||+|+||||||||+++ +
T Consensus 3 ~~~l~~~~~~~~~~~GK--~~Rp~l~~~~~~~~g~~~------------~~~~~~la~aiEllh~asLIhDDI~D~s~-~ 67 (259)
T cd00685 3 VELLREALRYLLLAGGK--RLRPLLVLLAARALGGPE------------LEAALRLAAAIELLHTASLVHDDVMDNSD-L 67 (259)
T ss_pred chHHHHHHHHHHHcCCc--cHhHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHHHHHHHHHhhhccCCc-c
Confidence 45566766655 56666 999999999999998751 15778999999999999999999999999 9
Q ss_pred CCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc---HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCC
Q psy11203 188 YSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN---QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTS 264 (438)
Q Consensus 188 RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~---~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~ 264 (438)
|||+ ||+|.+||+..||++||||++.+++.+++..+ +++++.+++++.++++||++|+.+..+.
T Consensus 68 RRG~-p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~------------ 134 (259)
T cd00685 68 RRGK-PTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDT------------ 134 (259)
T ss_pred cCCC-CcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCC------------
Confidence 9999 99999999999999999999999999999887 7999999999999999999999875431
Q ss_pred CCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q psy11203 265 PDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 265 ~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~ 344 (438)
..++++|++++.+|||+||+.+|.+|++++|++++.++.+++||+++|++|||.||++|+++++
T Consensus 135 ----------------~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 198 (259)
T cd00685 135 ----------------DVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDP 198 (259)
T ss_pred ----------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCh
Confidence 2488999999999999999999999999999999999999999999999999999999999974
Q ss_pred -----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhh
Q psy11203 345 -----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQ 417 (438)
Q Consensus 345 -----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~ 417 (438)
+.|.| .||.|+|+++++ ++.++.|.++|+..|+
T Consensus 199 ~~~gK~~~~Di~~gk~T~~~~~~l----------------------------------------~~~~~~~~~~a~~~l~ 238 (259)
T cd00685 199 ETLGKPVGSDLREGKCTLPVLLAL----------------------------------------RELAREYEEKALEALK 238 (259)
T ss_pred HHHCCCcchHHHcCCchHHHHHHH----------------------------------------HHHHHHHHHHHHHHHH
Confidence 24566 599999999975 5778899999999999
Q ss_pred ccCCchHHHHHHHHHHHHhh
Q psy11203 418 VFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 418 ~lp~s~ar~~L~~l~~~v~~ 437 (438)
.+|.+..+..|..+++++.+
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~ 258 (259)
T cd00685 239 ALPESPAREALRALADFILE 258 (259)
T ss_pred cCCCcHHHHHHHHHHHHHHc
Confidence 99988888899999998864
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.3e-49 Score=388.80 Aligned_cols=248 Identities=27% Similarity=0.383 Sum_probs=206.1
Q ss_pred hHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCC
Q psy11203 111 LLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSE 190 (438)
Q Consensus 111 ~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG 190 (438)
+++++.+|+..+|| |+||+|++++++++|.. .+.+..+|+++||||+||||||||||+++ +|||
T Consensus 1 ~~~~~~~~~~~~GK--~~Rp~l~~~~~~~~~~~-------------~~~~~~~a~avEliH~asLIhDDI~D~s~-~RRG 64 (260)
T PF00348_consen 1 WLEPARYYILRGGK--RIRPLLVLLAAEALGGD-------------PEKAIPLAAAVELIHAASLIHDDIIDNSD-LRRG 64 (260)
T ss_dssp HHHHHHHHHHSSSC--HHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCS-EETT
T ss_pred ChHHHHHHhhCCCc--cHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCCC
Confidence 36778889999887 99999999999999864 37889999999999999999999999999 9999
Q ss_pred CCCchhhhcChHHHHHHHHHHHHHHHHHHHccC----cHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCC
Q psy11203 191 PVVLNDMTFGNKIALLSGDYLLSNSCSELAALR----NQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPD 266 (438)
Q Consensus 191 ~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~----~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~ 266 (438)
+ ||+|.+||++.||++||||++.|+..++++. +..+..++......+++|+..|..+......
T Consensus 65 ~-pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~------------ 131 (260)
T PF00348_consen 65 K-PTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK------------ 131 (260)
T ss_dssp E-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS------------
T ss_pred C-ccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc------------
Confidence 9 9999999999999999999999999999988 2345555555555666665555544322210
Q ss_pred CchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC--
Q psy11203 267 DSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-- 344 (438)
Q Consensus 267 ~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-- 344 (438)
+.++++|++++++|||+||+.+|++|++++|.+++.++.+++||+++|+||||+||++|+++++
T Consensus 132 --------------~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~ 197 (260)
T PF00348_consen 132 --------------DPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEE 197 (260)
T ss_dssp --------------STSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred --------------cccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHH
Confidence 2589999999999999999999999999999999999999999999999999999999999973
Q ss_pred ---CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHH
Q psy11203 345 ---APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQ 405 (438)
Q Consensus 345 ---~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~ 405 (438)
+.|.| .||+|+|++++++..+. +..+++.... +..+.+.+.+.+..++.++++++++
T Consensus 198 ~gK~~~~Dl~~gk~Tlp~~~al~~~~~-~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 198 LGKPVGSDLKEGKPTLPVLHALERARE-ELRELLQEAY---GKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HSSTTTHHHHTTTSSHHHHHHHHHHHH-HHHHHHHHHH---HHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hcccchhHHhcCcccHHHHHHHHhCHH-HHHHHHHHHH---cccchHHHHHHHHHHHHHHHHHhhc
Confidence 34666 59999999999998431 4444444332 3346677888888888888888765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.5e-37 Score=298.03 Aligned_cols=225 Identities=28% Similarity=0.364 Sum_probs=196.5
Q ss_pred hHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhh-cChHHHHH
Q psy11203 128 AWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMT-FGNKIALL 206 (438)
Q Consensus 128 ~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~-fGn~~AVL 206 (438)
+||++++++++++|.. .+....+++++|+||++++|||||+|++. .|||+ |+.|.. ||+..||+
T Consensus 1 ~r~~~~~~~~~~~~~~-------------~~~~~~~a~ave~l~~~~li~DDI~D~~~-~rrg~-~~~~~~~~g~~~ai~ 65 (236)
T cd00867 1 SRPLLVLLLARALGGD-------------LEAALRLAAAVELLHAASLVHDDIVDDSD-LRRGK-PTAHLRRFGNALAIL 65 (236)
T ss_pred CcHHHHHHHHHHcCCC-------------HHHHHHHHHHHHHHHHHHHHHcccccCCc-cCCCC-ccHhHHhhCHhHHHH
Confidence 4999999999999876 26788999999999999999999999999 99999 999999 99999999
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHH
Q psy11203 207 SGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALAD 286 (438)
Q Consensus 207 aGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~ 286 (438)
+||+++..++..++++..+++.+++++.+.++++||++|+.+..+. ..++++
T Consensus 66 ~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~----------------------------~~t~~~ 117 (236)
T cd00867 66 AGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDT----------------------------YETLDE 117 (236)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCC----------------------------CCCHHH
Confidence 9999999999999998888899999999999999999999875431 148899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC----CCCCC--CCCChHHHHHH
Q psy11203 287 WTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY----APGTI--FNLTSAPVMFH 360 (438)
Q Consensus 287 yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~----~~g~d--~gk~TlPvl~a 360 (438)
|++++++|||++|+.+|..+++++|.+++..+.+++||+++|+||||.||++|+.++. |.|.| .|+.|+|++++
T Consensus 118 y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 118 YLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985 34455 59999999885
Q ss_pred hccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch--HHHHHHHHHHHHh
Q psy11203 361 LEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD--ARTALSNIIVAMG 436 (438)
Q Consensus 361 l~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~--ar~~L~~l~~~v~ 436 (438)
++.+.++.+++.+.+..+++.. .+..+..++.++.
T Consensus 198 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd00867 198 -----------------------------------------RERAAEYAEEAYAALEALPPSLPRARRALIALADFLY 234 (236)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 3455566677777777665543 4666777776654
No 13
>KOG0777|consensus
Probab=100.00 E-value=1.4e-31 Score=248.62 Aligned_cols=265 Identities=13% Similarity=0.147 Sum_probs=225.5
Q ss_pred HHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCC
Q psy11203 114 TAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPV 192 (438)
Q Consensus 114 ~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~ 192 (438)
+..+|+. -.|| ++|--|.+.+.+.+.-. + ++.-.+..++||+|++||+.|||.|++. .|||.
T Consensus 25 ~Py~yilq~PGK--qfR~~L~~afNhwl~~P------~-------dkLaii~~ivemLHNsSLLIDDIEDNs~-LRRG~- 87 (322)
T KOG0777|consen 25 KPYNYILQKPGK--QFRLNLIVAFNHWLNLP------K-------DKLAIISQIVEMLHNSSLLIDDIEDNSP-LRRGQ- 87 (322)
T ss_pred chHHHHHhCchH--HHHHHHHHHHHHHHhCC------H-------HHHHHHHHHHHHHhccceeeccccccch-hhcCC-
Confidence 3455554 5566 99999999988887654 1 3555678999999999999999999999 99999
Q ss_pred CchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhh
Q psy11203 193 VLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIM 272 (438)
Q Consensus 193 pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~ 272 (438)
|++|..||....|++.+|++.+|.+.+..+..|+.+.++.+.+-++..||-+|+.|..+..+|
T Consensus 88 pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcP----------------- 150 (322)
T KOG0777|consen 88 PVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCP----------------- 150 (322)
T ss_pred cchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCC-----------------
Confidence 999999999999999999999999999999999999999999999999999999998766554
Q ss_pred hhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC----CC--
Q psy11203 273 ESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY----AP-- 346 (438)
Q Consensus 273 ~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~----~~-- 346 (438)
++++|..|+..|||-||+.+.++.-.++...++ +..+-.-||+.|||+||++++.... +.
T Consensus 151 ----------tee~Yk~Mv~~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFa 216 (322)
T KOG0777|consen 151 ----------TEEMYKNMVMNKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFA 216 (322)
T ss_pred ----------CHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchh
Confidence 789999999999999999999999999976654 4456677999999999999985532 21
Q ss_pred -CCCCCCChHHHHHHhccCc-cHHHHHHHHcCCCCCCHHHHH-HHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch
Q psy11203 347 -GTIFNLTSAPVMFHLEQEK-SDELLNEINKGTESVTNIDYK-KVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423 (438)
Q Consensus 347 -g~d~gk~TlPvl~al~~~~-~~~l~~~l~~~~~~~~~~d~~-~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ 423 (438)
+..+||.++|+++|+...+ .+.+..++.++. ++.|++ .++.++++.|++++||....+...+|...++....++
T Consensus 217 EDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrqRT---~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 217 EDLTEGKFSFPIIHALKTKGQTEQVLRILRQRT---SDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred hhhccCccCCcchhhhhcCCchHHHHHHHHHhh---ccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3447999999999998755 456777777664 455665 6899999999999999999999999999999998888
Q ss_pred HHHHHH
Q psy11203 424 ARTALS 429 (438)
Q Consensus 424 ar~~L~ 429 (438)
.-..|.
T Consensus 294 yl~~L~ 299 (322)
T KOG0777|consen 294 YLPDLA 299 (322)
T ss_pred chHHHH
Confidence 644443
No 14
>KOG0711|consensus
Probab=99.93 E-value=6.4e-24 Score=206.18 Aligned_cols=287 Identities=17% Similarity=0.047 Sum_probs=222.0
Q ss_pred hHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCC
Q psy11203 111 LLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSE 190 (438)
Q Consensus 111 ~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG 190 (438)
.+.....|-..||| ..|++.|+...+++.+..- .++ +.......+++.+|+++...||-|||||+|. +|||
T Consensus 39 ~~~~~L~yN~~GGK--~nRgl~vv~s~~~L~~~~~--l~~----~~~~~a~~lGw~vElLQaffLiaDDIMDnS~-tRRG 109 (347)
T KOG0711|consen 39 WLKEVLDYNVIGGK--LNRGLSVVDSFKALVEPRK--LDE----EELQLALILGWCVELLQAFFLVADDIMDNSK-TRRG 109 (347)
T ss_pred HHHHHHhccCcccc--cccchhHHHHHHHhcCccC--CCH----HHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccCC
Confidence 34445556545566 7899999999999876421 111 1246777899999999999999999999999 9999
Q ss_pred CCCchhhhcCh-HHHHHHHHHHHHHHHHHHHc-cCc----HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCC
Q psy11203 191 PVVLNDMTFGN-KIALLSGDYLLSNSCSELAA-LRN----QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTS 264 (438)
Q Consensus 191 ~~pt~~~~fGn-~~AVLaGD~Lla~A~~~La~-l~~----~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~ 264 (438)
+ |+++.+-|. -.||+=+-+|-+.-..+|.. .++ .++++++.+.....+.|+++..... +...
T Consensus 110 q-pCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~-~~~l---------- 177 (347)
T KOG0711|consen 110 Q-PCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEG-NKDL---------- 177 (347)
T ss_pred C-cceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCccc-chhH----------
Confidence 9 999999998 46777664444433444442 232 4789999999999999966544322 2111
Q ss_pred CCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy11203 265 PDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAG-QDAELQEQGYQFGKHLALAWQACLDLEPFTS 342 (438)
Q Consensus 265 ~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag-~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~ 342 (438)
...+++.|-.++.+|||.+ |-.+.++|.+++| .+.+.-.....+-..+|..||++||+||++|
T Consensus 178 ---------------s~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fg 242 (347)
T KOG0711|consen 178 ---------------SKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFG 242 (347)
T ss_pred ---------------hhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcC
Confidence 1258999999999999997 9999999999999 5566777889999999999999999999999
Q ss_pred CC----CCCCCC--CCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q psy11203 343 NY----APGTIF--NLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKV 415 (438)
Q Consensus 343 d~----~~g~d~--gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~ 415 (438)
|+ |.|+|+ +|.||.+..|++. .+ ++.+++..++..++.+.++++..+..+.+--..-.+.-.....+....
T Consensus 243 Dp~vtgkiGtDIqDnKCsWlv~~al~~~~~--eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~ 320 (347)
T KOG0711|consen 243 DPEVTGKIGTDIQDNKCSWLVVKALQRASA--EQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKL 320 (347)
T ss_pred ChhhcCCCCCccccCceeeehHHHHhhcCH--HHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHH
Confidence 86 458785 8999999999998 45 788888888777888999999999999988888888888888888888
Q ss_pred hhccCCch--HHHHHHHHHHHH
Q psy11203 416 LQVFKESD--ARTALSNIIVAM 435 (438)
Q Consensus 416 L~~lp~s~--ar~~L~~l~~~v 435 (438)
+..++++. .+..+-.+++.+
T Consensus 321 I~~~~~~~~~~~~v~t~fl~ki 342 (347)
T KOG0711|consen 321 ISQVDEDTGVKVKVGTSFLNKI 342 (347)
T ss_pred HHHccCCCcchhhhHHHHHHHH
Confidence 88877543 333343344443
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.91 E-value=7e-22 Score=185.23 Aligned_cols=224 Identities=25% Similarity=0.310 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhh---cChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q psy11203 161 RALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMT---FGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRD 237 (438)
Q Consensus 161 ~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~---fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~ 237 (438)
..++.++|.+|+++++||||+|++. .|||. |+.+.. ||+..+++.|++++..++..+.+..++.+...+.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSG-TRRGL-PTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLD 90 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCC-CCCCc-hhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 99999 999988 999999999999999999999988778889999999999
Q ss_pred HHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH
Q psy11203 238 LTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQ 317 (438)
Q Consensus 238 l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~ 317 (438)
++.|+..|+.+..+ .. .++++|+.+.+.|||.++...|..++...+.+....
T Consensus 91 ~~~g~~~d~~~~~~-~~---------------------------~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 142 (243)
T cd00385 91 LLEGQLLDLKWRRE-YV---------------------------PTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELL 142 (243)
T ss_pred HHHHHHHHHHhccC-CC---------------------------CCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999988643 11 488999999999999999999999999988887788
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCCh
Q psy11203 318 EQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPG 397 (438)
Q Consensus 318 ~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ 397 (438)
..+..+|.++|++||+.||+.||..+...+ .|+.|+|.+++.+.... ..+ ...++.+++
T Consensus 143 ~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~--~~~~~l~~~~~~~~~~~---------------~~~----~~~~~~~~~ 201 (243)
T cd00385 143 EALRKLGRALGLAFQLTNDLLDYEGDAERG--EGKCTLPVLYALEYGVP---------------AED----LLLVEKSGS 201 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHh--CCchHHHHHHHHHhCCh---------------hhH----HHHHHHCCh
Confidence 999999999999999999999999875432 47999999998876431 111 126778889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCch--HHHHHHHHHHHH
Q psy11203 398 MRLTKQLQKQHSQQAMKVLQVFKESD--ARTALSNIIVAM 435 (438)
Q Consensus 398 ie~a~~~~~~~~~kA~~~L~~lp~s~--ar~~L~~l~~~v 435 (438)
++.+...+..+.+++++.+..+.... ....+...+..+
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (243)
T cd00385 202 LEEALEELAKLAEEALKELNELILSLPDVPRALLALALNL 241 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999998776542 444555554443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.88 E-value=0.00034 Score=66.45 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q psy11203 158 HSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRD 237 (438)
Q Consensus 158 ~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~ 237 (438)
+.....+.++-++|+|...||.|-+ +. .+++. .... -...||+|||+=++.+.+||+.++..+++.+|++|..
T Consensus 33 ~~~~~~~~a~~LVq~aLDtHd~V~~-~~-~~~~~-~~k~----RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~e 105 (212)
T PF07307_consen 33 EEAERYALATMLVQIALDTHDEVDN-AG-DESEE-SSKE----RQLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKE 105 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc-cc-ccccH-HHHh----hhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4667899999999999999999976 33 23332 1111 1578999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy11203 238 LTESEFL 244 (438)
Q Consensus 238 l~~Ge~l 244 (438)
+.+....
T Consensus 106 iNE~K~~ 112 (212)
T PF07307_consen 106 INELKMS 112 (212)
T ss_pred HHHHHHH
Confidence 9998854
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.01 E-value=0.21 Score=48.73 Aligned_cols=146 Identities=14% Similarity=-0.020 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy11203 230 LMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKL 309 (438)
Q Consensus 230 ~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gail 309 (438)
+-.+.+.+|.+|...|+.... . .|++++...+++-+|++....+++...-
T Consensus 88 l~~~~l~~li~~~~~dl~~~~---~---------------------------~t~~~L~~Y~~~vag~vg~l~~~~~~~~ 137 (267)
T PF00494_consen 88 LPREPLLELIDGMEMDLEFTP---Y---------------------------ETFADLERYCYYVAGSVGLLLLQLLGAH 137 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT-S--------------------------------SSHHHHHHHHHHHTHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHhcccccCCC---C---------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344667889999999886531 1 3788999989998998887777665442
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHH
Q psy11203 310 AGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVY 389 (438)
Q Consensus 310 ag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~ 389 (438)
.+. .....++.++|.|+|+.|=+.|+-.|. ...|.+-+|.=..-+..-. ..+++... ....++..++
T Consensus 138 --~~~---~~~~~~a~~lG~alql~nilRd~~~D~---~~~gR~ylP~d~l~~~gv~--~~dl~~~~---~~~~~~~~~~ 204 (267)
T PF00494_consen 138 --DPD---EAARDAARALGRALQLTNILRDIPEDA---LRRGRIYLPLDDLRRFGVT--PEDLLAGR---PRSERLRALI 204 (267)
T ss_dssp --TSH---HHHHHHHHHHHHHHHHHHHHHTHHHH----HHTT---S-HHHHHHTTSS--HHHHHHHG----GGHHHHHHH
T ss_pred --cch---hhHHHHHHHHHHHHHHHHHHHHhHHHH---HhcccccCCchhHHHcCCC--HHHHHhcc---cCCHHHHHHH
Confidence 122 467788999999999999888885441 1246666665333222100 01111111 0112233332
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHH
Q psy11203 390 NIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTA 427 (438)
Q Consensus 390 ~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~ 427 (438)
..-...++.|.++|...+..+|+..++..
T Consensus 205 ---------~~~~~~A~~~l~~a~~~~~~l~~~~~~~~ 233 (267)
T PF00494_consen 205 ---------RELAARARAHLDEARAGLSALPPPRARPA 233 (267)
T ss_dssp ---------HHHHHHHHHHHHHHHHGGGGS--TTHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHcCCHhhhHH
Confidence 34568899999999999999966555554
No 18
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=95.71 E-value=0.24 Score=50.60 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHH
Q psy11203 225 QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCK 304 (438)
Q Consensus 225 ~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~ 304 (438)
+..-+.+.+.+..|.+|..+++....-. ..|+++|...+++=-|..=...+.
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~----------------------------~~T~~dL~~YCy~VAG~VG~mlt~ 151 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTN----------------------------EQTVGDYDKYCHYVAGLVGIGLSR 151 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCC----------------------------CCCHHHHHHHHhccccHHHHHHHH
Confidence 3466677788889999998877543110 037788888888766654334444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHH
Q psy11203 305 GTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNID 384 (438)
Q Consensus 305 ~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d 384 (438)
+-+. +|...+.......++..+|+|+|+.+=+.|+..|- ..|.+=+|.=-.-+... .+.. +.... ....
T Consensus 152 l~~~-~~~~~~~~~~~~~~A~~lG~aLQlTNIlRDv~ED~----~~GR~YlP~e~l~~~g~--~~~d-l~~~~---~~~~ 220 (336)
T TIGR01559 152 LFVA-SGFEDPSLGESEALSNSMGLFLQKTNIIRDYLEDI----NEGRMFWPREIWSKYAK--KLGD-FKKPE---NSDK 220 (336)
T ss_pred HHhh-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHhHH----hCCCCCCCHHHHHHcCC--CHHH-hcCcc---ccHH
Confidence 4332 33222222234688999999999999999997653 23555555321111110 0011 11110 1122
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHH
Q psy11203 385 YKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDAR 425 (438)
Q Consensus 385 ~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar 425 (438)
+.. .+++-...+..|++.|+..+..+++...+
T Consensus 221 ~~~---------~l~~lv~~A~~~~~~al~yl~~l~~~~~~ 252 (336)
T TIGR01559 221 ALQ---------CLNELVTNALHHATDCLTYLSRLRDQSIF 252 (336)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 222 23444578999999999999999876544
No 19
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=95.70 E-value=1.5 Score=42.95 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q psy11203 233 GAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312 (438)
Q Consensus 233 ~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~ 312 (438)
+.+.+|++|..+|+... .. .+++++...+++-.|++..+++.+- +..
T Consensus 93 ~~~~~li~g~~~Dl~~~---~~---------------------------~t~~eL~~Y~~~vAg~vg~l~~~i~---~~~ 139 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR---RY---------------------------ETLDELDEYCYYVAGVVGLMLLRVF---GAS 139 (265)
T ss_pred HHHHHHHHHHHHhCCCC---CC---------------------------CCHHHHHHHHHHhHHHHHHHHHHHh---CCC
Confidence 44678889988888642 11 3678888888887777766655443 221
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 313 DAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 313 ~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
. .+....++.++|+|+|+.+=+.|+-.|- ..|.+.+|.=..-+..-. ...++ +.. ..+.+..+
T Consensus 140 ~---~~~~~~~A~~lG~AlqltnilRdv~eD~----~~gR~YlP~d~l~~~gv~--~~~l~-~~~---~~~~~~~~---- 202 (265)
T cd00683 140 S---DEAALERARALGLALQLTNILRDVGEDA----RRGRIYLPREELARFGVT--LEDLL-APE---NSPAFRAL---- 202 (265)
T ss_pred C---ChHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCcCCHHHHHHcCCC--HHHHc-CCC---CCHHHHHH----
Confidence 2 2345688999999999999888886552 346666775333222110 01111 111 12333333
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCC
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKE 421 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~ 421 (438)
+.+....++.|+..|...+..+|.
T Consensus 203 -----~~~~~~~A~~~~~~a~~~~~~lp~ 226 (265)
T cd00683 203 -----LRRLIARARAHYREALAGLAALPR 226 (265)
T ss_pred -----HHHHHHHHHHHHHHHHHhHHhCCH
Confidence 244457799999999999999994
No 20
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=94.40 E-value=1.2 Score=43.71 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q psy11203 233 GAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312 (438)
Q Consensus 233 ~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~ 312 (438)
..+.+|++|...|+... +. .|++++...++.-.|++..+++.+ ++..
T Consensus 85 ~~~~~li~g~~~Dl~~~---~~---------------------------~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~ 131 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT---RY---------------------------PDFAELDLYCDRVAGAVGRLSARI---FGAT 131 (266)
T ss_pred HHHHHHHHHHHHHcCCC---CC---------------------------CCHHHHHHHHHHhHHHHHHHHHHH---hCCC
Confidence 44678889988887642 11 378888888888888887777765 3322
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 313 DAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 313 ~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
+ +....++.++|.|+|+.+=+.|+-.|- ..|.+.+|.=..-+..-. ..+ +.+.. ....+..++
T Consensus 132 ~----~~~~~~a~~lG~AlqltnilRdv~eD~----~~gR~ylP~~~l~~~gv~--~~~-l~~~~---~~~~~~~~~--- 194 (266)
T TIGR03465 132 D----ARTLEYAHHLGRALQLTNILRDVGEDA----RRGRIYLPAEELQRFGVP--AAD-ILEGR---YSPALAALC--- 194 (266)
T ss_pred C----hhHHHHHHHHHHHHHHHHHHHHhHHHH----hCCCeecCHHHHHHcCCC--HHH-hcCCC---CCHHHHHHH---
Confidence 2 235678999999999999888885442 246666775332222110 011 11111 122333332
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s 422 (438)
.+-...++.|+++|.+.+..+|..
T Consensus 195 ------~~l~~~A~~~l~~a~~~~~~~p~~ 218 (266)
T TIGR03465 195 ------RFQAERARAHYAEADALLPACDRR 218 (266)
T ss_pred ------HHHHHHHHHHHHHHHHhhhhCCHh
Confidence 333577899999999999999853
No 21
>PLN02632 phytoene synthase
Probab=94.14 E-value=1 Score=45.98 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q psy11203 233 GAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312 (438)
Q Consensus 233 ~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~ 312 (438)
..+.+|++|..+|+... .. .|++++...+++--|.+-.+++.+ ++..
T Consensus 140 ~~~~~li~g~~~Dl~~~---~~---------------------------~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~ 186 (334)
T PLN02632 140 QPFRDMIEGMRMDLVKS---RY---------------------------ENFDELYLYCYYVAGTVGLMSVPV---MGIA 186 (334)
T ss_pred HHHHHHHHHHHHHhccC---CC---------------------------CCHHHHHHHHHHhhHHHHHHHHHH---hCCC
Confidence 44678899988888642 11 377888888888888777666655 2222
Q ss_pred C--HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccC-ccHHHHHHHHcCCCCCCHHHHHHHH
Q psy11203 313 D--AELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQE-KSDELLNEINKGTESVTNIDYKKVY 389 (438)
Q Consensus 313 ~--~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~-~~~~l~~~l~~~~~~~~~~d~~~i~ 389 (438)
+ ....+.+...+.++|+|+|+.+=+.|+-.|- ..|.+-+|.=..-+.. ..++ ++ +.. ....+..+
T Consensus 187 ~~~~~~~~~~~~~A~~lG~AlQltNILRDv~eD~----~~GRvYLP~e~L~~~Gv~~ed---l~-~~~---~~~~~~~l- 254 (334)
T PLN02632 187 PESKASTESVYNAALALGIANQLTNILRDVGEDA----RRGRVYLPQDELAQFGLTDED---IF-AGK---VTDKWRAF- 254 (334)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCceeCCHHHHHHcCCCHHH---Hh-cCC---CCHHHHHH-
Confidence 2 2223567788999999999999888885442 2456666642222211 1011 11 111 11223222
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy11203 390 NIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422 (438)
Q Consensus 390 ~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s 422 (438)
+.+-...++.|+++|...+..+|..
T Consensus 255 --------~~~~~~~Ar~~~~~a~~~l~~lp~~ 279 (334)
T PLN02632 255 --------MKFQIKRARMYFAEAEEGVSELDPA 279 (334)
T ss_pred --------HHHHHHHHHHHHHHHHHhHhhCCHH
Confidence 2233467999999999999999853
No 22
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=92.97 E-value=3.8 Score=40.22 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 283 ALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 283 t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
|++++...+++-.|++..+++.+ ++..+++ ...++.++|.|+|+.+=+.|+-.|- ..|.+.+|.=..-+
T Consensus 106 t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl~eD~----~~gR~YLP~~~l~~ 174 (266)
T TIGR03464 106 TWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDVGVDY----RKGRVYLPRDDLAR 174 (266)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhhHHHH----hcCCccCCHHHHHH
Confidence 77888888888778777766653 3333332 3467999999999999888885442 23666666433222
Q ss_pred cCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy11203 363 QEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422 (438)
Q Consensus 363 ~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s 422 (438)
..=. ..+++ +.. ....+..+ +..-...++.|+.+|...+..+|..
T Consensus 175 ~Gv~--~edl~-~~~---~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~~lp~~ 219 (266)
T TIGR03464 175 FGVS--EEDLA-AGR---ATPALREL---------MAFEVSRTRALLDRGAPLAARVDGR 219 (266)
T ss_pred cCCC--HHHHh-cCC---CCHHHHHH---------HHHHHHHHHHHHHHHHHhHHhCCHh
Confidence 2100 01111 111 12233332 3344577899999999999999853
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=91.51 E-value=9.4 Score=37.72 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHH
Q psy11203 224 NQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSC 303 (438)
Q Consensus 224 ~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc 303 (438)
.+.....+.+.+.+.+.|...+..+..+... +++++|+.+=..-.|..+. +
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~---------------------------psl~eYl~~R~~~~g~~~~--~ 177 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHV---------------------------PDVAEYLEMRRFNIGADPC--L 177 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------cCHHHHHHHhhhccccccc--H
Confidence 3667788888999999999988766544322 4789998554444354332 1
Q ss_pred HHHHHhcC--CCHHHHH--HHHHHHHHHHHHHHHHhhhccccCCC
Q psy11203 304 KGTLKLAG--QDAELQE--QGYQFGKHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 304 ~~gailag--~~~~~~~--~l~~fG~~LGiAFQi~DDllD~~~d~ 344 (438)
.++-...| .++.+.+ .+..+-+..+...-+.||+..|..+.
T Consensus 178 ~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~ 222 (303)
T cd00687 178 GLSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKEI 222 (303)
T ss_pred HHHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22222223 3344333 36778888888999999999997654
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=64.46 E-value=1.4e+02 Score=29.91 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q psy11203 232 SGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG 311 (438)
Q Consensus 232 s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag 311 (438)
.+.+.+|..|..+|+....- .+++++...+++--|..- +-++.+++-
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y------------------------------~~~~eL~~Yc~~vAg~vG---~l~~~Il~~ 148 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY------------------------------LDFEELEEYCYGVAGAVG---LLLARILGP 148 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc------------------------------cCHHHHHHHHHHhHHHHH---HHHHHHhCc
Confidence 45678999999999876321 134555555555444432 223334443
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11203 312 QDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNI 391 (438)
Q Consensus 312 ~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~ 391 (438)
.+ ......+...+|.|+|+.+=+.|+-.|- ..|..-+|.=-.-+... ....+. +.. ..+.+..+
T Consensus 149 ~~---~~~~~~~a~~lG~A~QlvNilRdv~eD~----~~GrvylP~e~l~~~g~--~~~d~~-~~~---~~~~~~~~--- 212 (288)
T COG1562 149 DK---DAATRAYARGLGLALQLVNILRDVGEDR----RRGRVYLPAEELARFGV--SEADLL-AGR---VDDAFREL--- 212 (288)
T ss_pred cc---chhhHHHHHHHHHHHHHHHHHHHhHHHH----hCCcccCCHHHHHHhCC--CHHHHH-ccc---chhHHHHH---
Confidence 32 2334444455999999999888885442 13555555311111111 011111 111 11223332
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHHhhccCCch
Q psy11203 392 VSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423 (438)
Q Consensus 392 v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ 423 (438)
+++--..++.|...|...+..+|...
T Consensus 213 ------~~~~~~~ar~~~~~a~~~~~~lp~~~ 238 (288)
T COG1562 213 ------MRFEADRARDHLAEARRGLPALPGRA 238 (288)
T ss_pred ------HHHHHHHHHHHHHHHHHhhhhCCccc
Confidence 24446788999999999999998653
No 25
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=52.43 E-value=18 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy11203 314 AELQEQGYQFGKHLALAWQACLDL 337 (438)
Q Consensus 314 ~~~~~~l~~fG~~LGiAFQi~DDl 337 (438)
++..+.+-+||..+|-.||++==+
T Consensus 15 et~~e~llRYGLf~GAIFQliCil 38 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLICIL 38 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999998543
No 26
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=50.68 E-value=2.2e+02 Score=27.04 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHH
Q psy11203 227 LVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGT 306 (438)
Q Consensus 227 v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~g 306 (438)
+.+.+.+.+.+.+.|...+..+..+... +++++|+.+=+.-.|.-+-..+..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~---------------------------ps~eeYl~~R~~t~g~~~~~~l~~~ 190 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRI---------------------------PSLEEYLEMRRHTSGVYPCLALIEF 190 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-----------------------------SHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCC---------------------------CCHHHHHHhccccccccHHHHHHHH
Confidence 5566888999999999888887654422 4789999665555555433332211
Q ss_pred HH--hcC-CCHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy11203 307 LK--LAG-QDAELQEQGYQFGKHLALAWQACLDLEPFTSN 343 (438)
Q Consensus 307 ai--lag-~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d 343 (438)
.+ ..| ...+..+.-..+-+..+..--+.+|+..|..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE 230 (270)
T PF03936_consen 191 ALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKE 230 (270)
T ss_dssp HCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcc
Confidence 11 111 11122222112556666666677999988654
No 27
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=36.79 E-value=3.8e+02 Score=25.56 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHH-HHH
Q psy11203 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGK-SCK 304 (438)
Q Consensus 226 ~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~-sc~ 304 (438)
.....+.+.+.+++.|...+..+...... +++++|+..-..-.|.-+-. .+.
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~---------------------------p~~~eYl~~R~~~~g~~~~~~l~~ 174 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYV---------------------------PSFEEYLENRRVSIGYPPLLALSF 174 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------------------CCHHHHHHhceehhhHHHHHHHHH
Confidence 66777888899999999888776543322 47899987766655553322 222
Q ss_pred HHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q psy11203 305 GTLKLAGQDA---ELQEQGYQFGKHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 305 ~gailag~~~---~~~~~l~~fG~~LGiAFQi~DDllD~~~d~ 344 (438)
.+.-. ..++ ........+-...+..-=+.+|+..|..+.
T Consensus 175 ~~~g~-~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 216 (284)
T cd00868 175 LGMGD-ILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEI 216 (284)
T ss_pred HHcCC-CCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 22111 1233 334567777777888888999998886553
No 28
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=34.92 E-value=6.3e+02 Score=27.49 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHH-HH
Q psy11203 223 RNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLL-GK 301 (438)
Q Consensus 223 ~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~-~~ 301 (438)
+.+..+..+.+...+++.+-+.+..+...... +++++|+..-..-+|... -.
T Consensus 353 ~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~v---------------------------Pt~eEYl~~~~~S~g~~~~~~ 405 (542)
T cd00684 353 GGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYV---------------------------PTFEEYMENALVSIGLGPLLL 405 (542)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHhhhhHHhhHHHHHH
Confidence 34567788889999999999999888644322 488999988776655532 22
Q ss_pred HHHHHHHhcC--CCHHHHHHHH---HHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 302 SCKGTLKLAG--QDAELQEQGY---QFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 302 sc~~gailag--~~~~~~~~l~---~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
.+..+ .| .+++..+.+. ++-...+....+.||+..+..+...|. ..++..+|.-+
T Consensus 406 ~~~~~---~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGd---v~n~V~~ymke 465 (542)
T cd00684 406 TSFLG---MGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGD---VASSIECYMKE 465 (542)
T ss_pred HHHHh---cCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCC---cccHHHHHHHh
Confidence 22222 22 4555555443 577778899999999998865533231 13455555433
No 29
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=33.92 E-value=4.6e+02 Score=25.64 Aligned_cols=56 Identities=16% Similarity=-0.069 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCC---CCCCCchhhhcChHHHHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLY---SEPVVLNDMTFGNKIALLSGDYLLSNSCSELA 220 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~R---RG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La 220 (438)
...++=++|.+.-+..|+.|-+. .| +.+ |-..-+...+.|...+=.++.-++-...
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~i-D~~~~~~R-pl~sG~is~~~a~~~~~~l~~~~~~l~~ 100 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEI-DKINKPER-PIPSGRISLKEAKIFSITLFIVGLILSI 100 (279)
T ss_pred HHHHHHHHHHHHHHHHhhccccc-ccccCCCC-CcCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44456689999999999988654 33 456 7777777888888888777777664443
No 30
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=30.73 E-value=5.1e+02 Score=25.22 Aligned_cols=60 Identities=7% Similarity=-0.128 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhhhCccCCCC--CCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc
Q psy11203 162 ALAEVTEMIRTSHLVHKGIVNITP--GLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL 222 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDIiD~s~--~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l 222 (438)
-+..++=++|.+.-+..|+.|-+. ..|+.+ |-..-....+.|...+=.++.-++-....+
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~R-pl~~G~is~~~a~~~~~~l~~~g~~~~~~l 103 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDR-PIPSGAVSPRGALAFSILLFAAGVALAFLL 103 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCC-CcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678999999999977643 135667 877777788888888777776666544433
No 31
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=27.72 E-value=5.7e+02 Score=24.81 Aligned_cols=55 Identities=9% Similarity=-0.138 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhhCccCCCC--CCCCCCCCchhhhcChHHHHHHHHHHHHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGIVNITP--GLYSEPVVLNDMTFGNKIALLSGDYLLSNSCS 217 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDIiD~s~--~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~ 217 (438)
-...++=++|.+.-+..|+.|.+. ..|..+ |-..-+...+.|...+=.++.-+.-
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~R-pl~~G~is~~~a~~~~~~~~~~~~~ 97 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRINRPDR-PIPSGRISRREALLLAILLFILGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344566789999999999987654 124444 6555555566676666555555543
No 32
>PF11676 DUF3272: Protein of unknown function (DUF3272); InterPro: IPR021690 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=25.12 E-value=1.3e+02 Score=23.12 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHH--HccCcHHHHHHHHHHH
Q psy11203 202 KIALLSGDYLLSNSCSEL--AALRNQHLVELMSGAV 235 (438)
Q Consensus 202 ~~AVLaGD~Lla~A~~~L--a~l~~~~v~~~~s~~i 235 (438)
.-|++.|||+++--...| .+++..-++..+.+.+
T Consensus 20 N~ai~~g~y~~A~Fw~~Ll~Rnl~~aY~v~K~~~~i 55 (61)
T PF11676_consen 20 NEAIMSGDYFFAFFWGFLLFRNLRVAYVVDKFVKEI 55 (61)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999998755444 3444333444444433
No 33
>KOG1345|consensus
Probab=23.41 E-value=44 Score=33.61 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCc
Q psy11203 160 QRALAEVTEMIRTSHLVHKGI 180 (438)
Q Consensus 160 ~~~lA~avElIHtAsLIHDDI 180 (438)
.-+|+.|+|++|.--|||+|+
T Consensus 127 ~~ql~SAi~fMHsknlVHRdl 147 (378)
T KOG1345|consen 127 FAQLLSAIEFMHSKNLVHRDL 147 (378)
T ss_pred HHHHHHHHHHhhccchhhccc
Confidence 356899999999999999998
No 34
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=23.24 E-value=7.6e+02 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCChHHHHHH
Q psy11203 327 LALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFH 360 (438)
Q Consensus 327 LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~a 360 (438)
.-+++-+..|+.|..+|.+ .|+.|+|+.+.
T Consensus 187 w~~~~~~~~a~~D~e~D~~----~G~~Tlpv~~G 216 (297)
T PRK12871 187 WTMAHLGLNDFIDLENDRA----RGMKSIAVLYG 216 (297)
T ss_pred HHHHHHHHHHHhhhhhHHH----cCCeeeeeeec
Confidence 3556678888888876644 46777777664
No 35
>PF09316 Cmyb_C: C-myb, C-terminal; InterPro: IPR015395 This entry represents the C-terminal domain of the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis [].
Probab=22.86 E-value=3e+02 Score=25.42 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=52.5
Q ss_pred cccccccCCcc---cccccCCCCCCchHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHH--HHHH-h-CCCCchHHHH
Q psy11203 43 ESSSAAKFTPT---HTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALH--LRKL-V-GSNHPLLKTA 115 (438)
Q Consensus 43 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~a~k~v~~p~s~~~l~~ll~~el~~v~~~--l~~~-l-~s~~p~l~~a 115 (438)
......|.||. -++..-.+.++-|..|+-+-||--|.-.-...-=..|.++|..|-+. ..+. . ....|..+..
T Consensus 47 qkEn~~frTP~~~rs~~~~tPRTPTPFKnALA~~ekK~Gplk~lp~tPs~L~EDi~EvikqE~~~~~~~~~~~~~~~kk~ 126 (167)
T PF09316_consen 47 QKENDGFRTPNIRRSILESTPRTPTPFKNALAAQEKKYGPLKYLPQTPSHLEEDIREVIKQEQGEESIVAESSEPELKKI 126 (167)
T ss_pred ccCCCCccCCCCcccCCCCCCCCCCcHHHHHHHHHHhcCCCccCCCchHHHHHHHHHHHHhccccchhhhccccchhhhh
Confidence 34456777884 56665668888999999888887774211111111233333333211 1111 1 1234777777
Q ss_pred HHHHHcCCCCcchHHHHHHHHHH
Q psy11203 116 KSLLYNGRNNMQAWGLIVLLISK 138 (438)
Q Consensus 116 ~~~~~~~gkklr~RplLvLL~s~ 138 (438)
+.-.....| |.|-.|++-.+.
T Consensus 127 k~e~~sP~k--kvRKsL~l~~W~ 147 (167)
T PF09316_consen 127 KQEVESPMK--KVRKSLALDQWE 147 (167)
T ss_pred hhccCCchh--hhhhhhcccccc
Confidence 665555556 889988775443
No 36
>PRK10581 geranyltranstransferase; Provisional
Probab=21.09 E-value=4.3e+02 Score=26.40 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC
Q psy11203 160 QRALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR 223 (438)
Q Consensus 160 ~~~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~ 223 (438)
...+...-+.+=.|+=|.|||.|- .+ .+.|+ +|.-..+|-.-|--.-+-++..|...|..+.
T Consensus 205 ~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~D-l~~gk-~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 205 LPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGAD-QQLGK-STYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchh-hhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345666778888899999999983 23 45677 7776677666565555556677777777774
No 37
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=20.66 E-value=1.7e+02 Score=28.62 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 327 LALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 327 LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
+.+++++..|+.|..+|.+ .|+.|+|+.+-.+
T Consensus 173 ~~~~~~~~~d~~D~e~D~~----~G~~Tlpv~lG~~ 204 (285)
T PRK12872 173 KSFIREIVFDIKDIEGDRK----SGLKTLPIVLGKE 204 (285)
T ss_pred HHHHHHHHHhcccchhHHH----cCCcccchhcchH
Confidence 3578889999999988864 4677888877544
No 38
>KOG2802|consensus
Probab=20.66 E-value=2.9e+02 Score=28.92 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy11203 294 SAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSN 343 (438)
Q Consensus 294 KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d 343 (438)
=||..++++|....-..|.+--..-----.|--||+. .||+-|..+.
T Consensus 370 VtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV---e~diyDvK~~ 416 (503)
T KOG2802|consen 370 VTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV---ENDIYDVKAT 416 (503)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH---HHhhhhccce
Confidence 4888888888887777775421111112358889997 8999888765
Done!