Query psy11203
Match_columns 438
No_of_seqs 253 out of 1585
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:47:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 8.2E-68 2.8E-72 533.7 34.7 316 76-437 17-342 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 2.2E-66 7.6E-71 523.0 36.2 313 79-437 7-330 (341)
3 3rmg_A Octaprenyl-diphosphate 100.0 6.3E-65 2.2E-69 511.3 33.5 310 82-437 5-323 (334)
4 3lmd_A Geranylgeranyl pyrophos 100.0 2.7E-64 9.3E-69 510.1 32.9 306 84-437 34-349 (360)
5 3nf2_A Putative polyprenyl syn 100.0 2.7E-64 9.4E-69 509.5 32.7 307 87-437 6-341 (352)
6 3pko_A Geranylgeranyl pyrophos 100.0 3.7E-64 1.3E-68 505.7 29.4 308 83-437 14-331 (334)
7 1wy0_A Geranylgeranyl pyrophos 100.0 4.3E-63 1.5E-67 500.1 32.5 310 83-437 4-339 (342)
8 3apz_A Geranyl diphosphate syn 100.0 3.2E-63 1.1E-67 502.1 25.9 314 89-437 13-345 (348)
9 3aqb_B Component B of hexapren 100.0 1.5E-62 5.1E-67 492.9 30.4 305 85-437 5-322 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 1.6E-61 5.5E-66 490.6 33.1 316 84-437 4-333 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.2E-60 4.1E-65 480.0 29.6 299 91-437 6-327 (330)
12 3tc1_A Octaprenyl pyrophosphat 100.0 2.8E-60 9.5E-65 473.6 29.7 294 92-435 4-306 (315)
13 1v4e_A Octoprenyl-diphosphate 100.0 5.5E-60 1.9E-64 468.7 27.4 276 90-425 9-291 (299)
14 3lk5_A Geranylgeranyl pyrophos 100.0 3E-59 1E-63 476.8 31.1 313 83-437 18-370 (380)
15 2e8v_A Geranylgeranyl pyrophos 100.0 2.2E-60 7.6E-65 479.6 22.4 298 97-438 10-340 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 1.4E-59 4.9E-64 466.3 24.8 284 101-437 2-294 (301)
17 3ipi_A Geranyltranstransferase 100.0 1.6E-58 5.4E-63 456.9 24.3 267 95-437 12-281 (295)
18 1yhl_A Farnesyl pyrophosphate 100.0 2.1E-57 7.2E-62 461.8 30.0 308 110-437 34-359 (362)
19 4f62_A Geranyltranstransferase 100.0 1.9E-56 6.4E-61 445.4 30.9 269 85-437 4-292 (317)
20 2h8o_A Geranyltranstransferase 100.0 1.9E-56 6.6E-61 448.9 30.3 268 85-437 38-332 (335)
21 2qis_A Farnesyl pyrophosphate 100.0 1.6E-56 5.6E-61 456.4 29.7 294 110-437 64-371 (374)
22 3uca_A Geranyltranstransferase 100.0 1E-56 3.4E-61 448.6 26.8 278 76-437 23-321 (324)
23 1rqj_A Geranyltranstransferase 100.0 1.2E-56 4E-61 445.1 26.1 269 86-437 3-296 (299)
24 3ts7_A Geranyltranstransferase 100.0 2.9E-56 9.9E-61 445.3 28.7 267 86-437 9-299 (324)
25 3lsn_A Geranyltranstransferase 100.0 4.2E-56 1.4E-60 441.3 28.3 268 86-437 3-293 (304)
26 1rtr_A Geranyltranstransferase 100.0 1.9E-56 6.5E-61 443.7 25.4 263 93-437 9-290 (301)
27 2her_A Fragment, farnesyl pyro 100.0 3.3E-57 1.1E-61 458.9 18.9 283 110-437 58-353 (368)
28 1uby_A FPS, farnesyl diphospha 100.0 1.9E-55 6.4E-60 447.6 31.3 292 111-437 58-364 (367)
29 3p8l_A Geranyltranstransferase 100.0 5.5E-56 1.9E-60 439.8 26.1 265 91-437 15-301 (302)
30 2ihi_A Pyrophosphate synthase; 100.0 9.7E-56 3.3E-60 452.8 28.3 296 110-437 66-393 (395)
31 3p8r_A Geranyltranstransferase 100.0 1E-55 3.5E-60 438.4 26.4 264 89-437 12-299 (302)
32 3mav_A Farnesyl pyrophosphate 100.0 3.6E-55 1.2E-59 450.0 30.5 330 86-435 36-391 (395)
33 3dyh_A Farnesyl pyrophosphate 100.0 1.8E-55 6.1E-60 450.6 27.5 306 111-437 57-387 (390)
34 3m0g_A Farnesyl diphosphate sy 100.0 2.9E-55 1E-59 433.9 27.5 266 86-437 3-286 (297)
35 2ftz_A Geranyltranstransferase 100.0 5.8E-55 2E-59 429.3 29.1 259 94-437 15-283 (284)
36 3lom_A Geranyltranstransferase 100.0 9.1E-55 3.1E-59 433.1 29.1 268 86-437 9-300 (313)
37 2azj_A Geranylgeranyl pyrophos 100.0 8.7E-55 3E-59 429.2 27.7 266 84-437 9-278 (289)
38 3pde_A Farnesyl-diphosphate sy 100.0 1.3E-54 4.3E-59 430.9 25.1 270 85-437 7-297 (309)
39 2j1p_A Geranylgeranyl pyrophos 100.0 7.5E-54 2.5E-58 423.8 29.0 263 88-437 15-290 (293)
40 3llw_A Geranyltranstransferase 100.0 2.7E-53 9.3E-58 422.1 29.5 275 85-437 7-302 (311)
41 3npk_A Geranyltranstransferase 100.0 5.2E-53 1.8E-57 416.5 27.2 259 95-436 7-283 (291)
42 2q58_A Fragment, farnesyl pyro 100.0 9.7E-54 3.3E-58 435.3 22.0 282 112-437 60-353 (368)
43 4fp4_A Polyprenyl synthetase; 100.0 7.4E-48 2.5E-52 377.6 19.6 207 86-344 6-213 (285)
44 3kra_B Geranyl diphosphate syn 100.0 1.8E-46 6.3E-51 367.4 25.9 201 91-337 6-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 1.8E-45 6.1E-50 360.3 27.2 202 88-338 8-223 (273)
46 4hd1_A Squalene synthase HPNC; 94.7 2 6.7E-05 41.5 18.3 114 283-422 124-237 (294)
47 3vj8_A Squalene synthase; farn 91.5 0.97 3.3E-05 44.8 10.5 145 227-423 112-257 (343)
48 3acx_A Dehydrosqualene synthas 90.7 3.3 0.00011 39.7 13.3 114 283-422 128-242 (293)
49 3aqb_A Component A of hexapren 87.7 0.66 2.3E-05 39.8 4.9 42 204-245 72-113 (147)
50 3v1v_A 2-MIB synthase, 2-methy 85.4 11 0.00038 38.4 13.7 116 214-361 243-362 (433)
51 3kb9_A EPI-isozizaene synthase 84.4 22 0.00074 35.3 15.2 106 224-360 175-283 (382)
52 1di1_A Aristolochene synthase; 58.4 1.2E+02 0.004 28.2 18.4 65 282-347 152-217 (300)
53 3g4d_A (+)-delta-cadinene synt 54.1 2.1E+02 0.0072 29.9 14.7 91 225-345 365-461 (554)
54 1ps1_A Pentalenene synthase; a 54.0 1.5E+02 0.0051 28.1 17.9 115 217-362 125-243 (337)
55 2ong_A 4S-limonene synthase; m 48.9 2.5E+02 0.0085 29.1 14.3 91 225-344 354-449 (543)
56 3uca_A Geranyltranstransferase 46.8 1.9E+02 0.0066 27.9 12.1 64 159-224 232-307 (324)
57 3n0f_A Isoprene synthase; terp 46.0 2.1E+02 0.0071 30.0 12.9 90 226-344 364-458 (555)
58 4f62_A Geranyltranstransferase 40.6 87 0.003 30.3 8.4 64 159-224 203-278 (317)
59 3lsn_A Geranyltranstransferase 39.1 85 0.0029 30.2 8.1 64 159-224 204-279 (304)
60 2j5c_A 1,8-cineole synthase; t 38.8 3.6E+02 0.012 28.1 14.5 91 226-345 382-477 (569)
61 3m00_A Aristolochene synthase; 37.0 2.1E+02 0.0071 29.9 11.2 90 225-343 361-454 (550)
62 3p8l_A Geranyltranstransferase 35.3 1.4E+02 0.0048 28.6 8.9 62 159-222 207-280 (302)
63 3sdr_A Alpha-bisabolene syntha 34.7 1.4E+02 0.0049 32.7 9.9 90 227-345 626-723 (817)
64 3m0g_A Farnesyl diphosphate sy 33.0 1.2E+02 0.0042 28.9 8.1 61 162-224 200-272 (297)
65 3lom_A Geranyltranstransferase 32.6 2.7E+02 0.0094 26.6 10.6 64 159-224 211-286 (313)
66 2h8o_A Geranyltranstransferase 31.9 1.5E+02 0.0052 28.8 8.7 63 159-223 243-317 (335)
67 1rtr_A Geranyltranstransferase 31.4 1.1E+02 0.0038 29.2 7.5 63 159-223 199-273 (301)
68 3ts7_A Geranyltranstransferase 31.1 1.1E+02 0.0039 29.6 7.6 64 159-224 210-285 (324)
69 3bny_A Aristolochene synthase; 30.3 3.4E+02 0.012 25.3 16.6 80 282-362 166-251 (320)
70 1n1b_A (+)-bornyl diphosphate 30.2 3E+02 0.01 28.6 11.1 106 226-363 361-472 (549)
71 3p8r_A Geranyltranstransferase 23.6 1.5E+02 0.005 28.4 6.8 62 161-224 212-285 (302)
72 3k6t_A Female germline-specifi 21.4 1.7E+02 0.006 21.2 5.0 41 67-107 11-51 (60)
73 3p5p_A Taxadiene synthase; cla 20.4 2.3E+02 0.0079 30.8 8.2 91 226-345 566-661 (764)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=8.2e-68 Score=533.73 Aligned_cols=316 Identities=19% Similarity=0.238 Sum_probs=264.6
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhc
Q psy11203 76 IVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAG 155 (438)
Q Consensus 76 ~v~~p~s~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~ 155 (438)
+-..|++|.++++.+++++++|+..|++.+++++|.+.++..|+...||| |+||+||+++++++|+..
T Consensus 17 ~~~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGK-rlRp~l~ll~~~~~g~~~----------- 84 (345)
T 3oyr_A 17 LPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGK-RLRPLMTVAAARLAGADN----------- 84 (345)
T ss_dssp ---CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCC-CHHHHHHHHHHHHTTCCS-----------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-----------
Confidence 33447899999999999999999999999999999999997776654444 999999999999998762
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Q psy11203 156 VLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAV 235 (438)
Q Consensus 156 i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i 235 (438)
+.++++|+++||||+||||||||||+++ +|||+ ||+|.+|||++|||+||||+++||+.+++.+++++++.+++++
T Consensus 85 --~~~~~~A~aiEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~ 160 (345)
T 3oyr_A 85 --DHFQKLAAAVEFIHTATLLHDDVVDGSQ-LRRGK-VAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARAS 160 (345)
T ss_dssp --STHHHHHHHHHHHHHHHHHTTTTC-----------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHCcccCCCC-CCCCC-ccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 5678899999999999999999999999 99999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH
Q psy11203 236 RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAE 315 (438)
Q Consensus 236 ~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~ 315 (438)
.+|++||++|+.+..+. +.++++|++++++|||+||+.||++|++++|++++
T Consensus 161 ~~~~~GQ~~dl~~~~~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~ 212 (345)
T 3oyr_A 161 RVIAEGEVLQLMRSHDL----------------------------NLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVA 212 (345)
T ss_dssp HHHHHHHHHHHHTSSCS----------------------------SCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCC----------------------------CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999876442 25889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhcc-Ccc--HHHHHHHHcCCCCCCHHHH
Q psy11203 316 LQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQ-EKS--DELLNEINKGTESVTNIDY 385 (438)
Q Consensus 316 ~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~-~~~--~~l~~~l~~~~~~~~~~d~ 385 (438)
.++.+++||++||+||||+||++||++++ +.|.| +||.|+|++|+++. ++. +.+.+.+.+.. .+++++
T Consensus 213 ~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~--~~~~~~ 290 (345)
T 3oyr_A 213 KSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRRE--QTEADF 290 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC------CCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCC--CCHHHH
Confidence 99999999999999999999999999984 34667 49999999999987 441 13334443322 456889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 386 KKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 386 ~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++|+++|++++|++++++|.++|++.|+.||++++|+.|.++++++++
T Consensus 291 ~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~ 342 (345)
T 3oyr_A 291 RRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELADFAVS 342 (345)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=2.2e-66 Score=523.04 Aligned_cols=313 Identities=18% Similarity=0.217 Sum_probs=273.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcch
Q psy11203 79 YPTSFLSLRWLLSDEIANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVL 157 (438)
Q Consensus 79 ~p~s~~~l~~ll~~el~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~ 157 (438)
-|++|.++++.++++++.|+..|++.+++. +|.+.++..|+...||| |+||+||+++++++|+..
T Consensus 7 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~l~l~~~~~~g~~~------------- 72 (341)
T 3mzv_A 7 ATKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGK-RLRPMLTLAAARLVGYGG------------- 72 (341)
T ss_dssp --CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCC-CHHHHHHHHHHHHTTCCC-------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-------------
Confidence 488999999999999999999999999998 99999987776654444 999999999999998762
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q psy11203 158 HSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRD 237 (438)
Q Consensus 158 ~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~ 237 (438)
+.+..+|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.+++++++.+++++.+
T Consensus 73 ~~~~~~A~aiEliH~asLiHDDI~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 150 (341)
T 3mzv_A 73 PFHVHLAATVEFIHTATLLHDDVVDESR-QRRGR-PTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAV 150 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-------CTTS-CCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccCCCC-CcCCC-ccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5788999999999999999999999999 99999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH
Q psy11203 238 LTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQ 317 (438)
Q Consensus 238 l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~ 317 (438)
+++||++|+.+..+. +.++++|++++++|||+||+.||++|++++|++++.+
T Consensus 151 ~~~GQ~~dl~~~~~~----------------------------~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~ 202 (341)
T 3mzv_A 151 IAEGEVLQLTAAQNL----------------------------ATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQV 202 (341)
T ss_dssp HHHHHHHHHHHTTCT----------------------------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhccCC----------------------------CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999886432 2588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCcc---HHHHHHHHcCCCCCCHHHHHH
Q psy11203 318 EQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKS---DELLNEINKGTESVTNIDYKK 387 (438)
Q Consensus 318 ~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~---~~l~~~l~~~~~~~~~~d~~~ 387 (438)
+.+++||++||+||||+||++||++++ +.|.| +||.|+|++++++..+. ..+.+++.+.. .+++++++
T Consensus 203 ~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~--~~~~~~~~ 280 (341)
T 3mzv_A 203 QALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGD--QQDGDLEH 280 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCC--CCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCC--CCHHHHHH
Confidence 999999999999999999999999984 34666 59999999999998542 13444554432 46789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 388 VYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 388 i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++|+++|++++|++++++|.++|++.|+.||++++|+.|..|++++++
T Consensus 281 i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~ 330 (341)
T 3mzv_A 281 AMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVE 330 (341)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTG
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999874
No 3
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-65 Score=511.32 Aligned_cols=310 Identities=16% Similarity=0.243 Sum_probs=266.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHH
Q psy11203 82 SFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQR 161 (438)
Q Consensus 82 s~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~ 161 (438)
++..++..++++++.|+..|++.+.+.+|.+.++.+|+...||| |+||+||+++++++|+. .+.+.
T Consensus 5 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~l~l~~~~~~g~~-------------~~~~~ 70 (334)
T 3rmg_A 5 SISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRNGK-MMRPILVLLVARLYGAV-------------TPATL 70 (334)
T ss_dssp HHHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC-----CHHHHHHHHHHHHHSCC-------------CHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCC-------------hHHHH
Confidence 45678888999999999999999999999999999888765555 99999999999999876 26788
Q ss_pred HHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTES 241 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~G 241 (438)
++|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|+..+++.+++++++.+++++.++++|
T Consensus 71 ~~A~aiEliH~asLiHDDI~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 148 (334)
T 3rmg_A 71 HAAVSLELLHTASLVHDDVVDEST-ERRGQ-LSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEG 148 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccCCCC-CcCCC-ccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999 9999999999999999999999999999998999999999999999999
Q ss_pred HHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy11203 242 EFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGY 321 (438)
Q Consensus 242 e~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~ 321 (438)
|++|+.+..+. +.++++|++++++|||+||+.||++|++++|++++.++.++
T Consensus 149 Q~ldl~~~~~~----------------------------~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~ 200 (334)
T 3rmg_A 149 ELLQLSNVSNH----------------------------SFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFAR 200 (334)
T ss_dssp HHHHHHCCCC------------------------------CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhCCCC----------------------------CCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999876432 25889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCC----CCCCC--CCCChHHHHHHhccC-cc--HHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 322 QFGKHLALAWQACLDLEPFTSNY----APGTI--FNLTSAPVMFHLEQE-KS--DELLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 322 ~fG~~LGiAFQi~DDllD~~~d~----~~g~d--~gk~TlPvl~al~~~-~~--~~l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
+||++||+||||+||++||++++ +.|.| +||.|+|++++++.. +. ..+.+++.+.. .++++++++++++
T Consensus 201 ~~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~--~~~~~~~~v~~~i 278 (334)
T 3rmg_A 201 LLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGT--ATPDEIVRLIEFT 278 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCC--CCHHHHHHHHHHH
Confidence 99999999999999999999532 34666 599999999999973 32 35666666543 5789999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++|++++|++++++|.++|++.|+.||++++|+.|..|++++++
T Consensus 279 ~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 323 (334)
T 3rmg_A 279 KDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDYVVA 323 (334)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999874
No 4
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.7e-64 Score=510.13 Aligned_cols=306 Identities=18% Similarity=0.202 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhC-CCCcchhhHHhhhcchHHHHH
Q psy11203 84 LSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAG-HLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 84 ~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g-~~~~~~~~~~~~~~i~~~~~~ 162 (438)
..++..++++++.|+..|++.+.+.+|.+.++..|+...||| |+||+||+++++++| .. .+...+
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~ll~~~~~~~~~-------------~~~~~~ 99 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGK-RFRPMFALLASEFGEKPL-------------SENVIK 99 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSC-CHHHHHHHHHHTTSSSTT-------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHhCCCC-------------hHHHHH
Confidence 467789999999999999999999999999998888765555 999999999999887 43 267889
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESE 242 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge 242 (438)
+|+++||||+||||||||||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++++ +++++.+++++.+|++||
T Consensus 100 ~A~avEliH~asLIHDDImD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ 176 (360)
T 3lmd_A 100 AAVVVEITHLATLYHDDVMDEAS-MRRGV-PSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQ 176 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCCCC-CCCCC-CcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999 9999999999999999999999999999987 599999999999999999
Q ss_pred HhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy11203 243 FLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQ 322 (438)
Q Consensus 243 ~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~ 322 (438)
++|+.+..+. .++++|++++++|||+||+.+|++|++++|++++.++.+++
T Consensus 177 ~ldl~~~~~~-----------------------------~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~ 227 (360)
T 3lmd_A 177 MRETVGPRDT-----------------------------DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKN 227 (360)
T ss_dssp HHHHHCCTTS-----------------------------CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhccCCC-----------------------------CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999876432 37899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCc-c-HHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy11203 323 FGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEK-S-DELLNEINKGTESVTNIDYKKVYNIVS 393 (438)
Q Consensus 323 fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~-~-~~l~~~l~~~~~~~~~~d~~~i~~~v~ 393 (438)
||++||+||||+||++||++++ +.|.| +||.|+|++|+++..+ + +++.+++.+.. .+++++++++++|+
T Consensus 228 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~--~~~~~~~~~~~ll~ 305 (360)
T 3lmd_A 228 FGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPL--EDDETVNHVLELLS 305 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCC--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCC--CCHHHHHHHHHHHH
Confidence 9999999999999999999984 34666 4999999999999743 2 35666665432 57899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 394 KGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 394 ~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++|++++|++++++|.++|++.|+.||++++|+.|.+|++++++
T Consensus 306 ~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~ 349 (360)
T 3lmd_A 306 QSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVK 349 (360)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=2.7e-64 Score=509.54 Aligned_cols=307 Identities=16% Similarity=0.155 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-----------cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhc
Q psy11203 87 RWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLY-----------NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAG 155 (438)
Q Consensus 87 ~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~-----------~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~ 155 (438)
..++......|+.+|++.+++.+|.+.++..|.+ ..||| |+||+||+++++++|+.
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~gGK-rlRp~l~ll~~~~~g~~------------ 72 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGK-AVRPALAVLSAEVTGAA------------ 72 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCC-CHHHHHHHHHHHTTTCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCCcc-cHHHHHHHHHHHHcCCC------------
Confidence 4477788888999999999999999999998877 34444 99999999999999876
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcH---HHHHHHH
Q psy11203 156 VLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQ---HLVELMS 232 (438)
Q Consensus 156 i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~---~v~~~~s 232 (438)
.+.++++|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|++.+++++++ +++++++
T Consensus 73 -~~~~~~~A~avEliH~asLiHDDI~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~ 149 (352)
T 3nf2_A 73 -PEVGVPGAVAVELVHNFSLLHDDLMDGDE-QRRHR-DTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLT 149 (352)
T ss_dssp -GGGGHHHHHHHHHHHHHHHHHHHHHHTCC-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCCC-ccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 14678899999999999999999999999 99999 999999999999999999999999999999887 7899999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q psy11203 233 GAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312 (438)
Q Consensus 233 ~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~ 312 (438)
+++.++++||++|+.+..+. +.++++|++++++|||+||+.||++|++++|+
T Consensus 150 ~~~~~l~~GQ~~dl~~~~~~----------------------------~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~ 201 (352)
T 3nf2_A 150 KASRSLIDGQAQDISYEHRD----------------------------RVSVEECLEMEGNKTGALLACASSIGAVLGGA 201 (352)
T ss_dssp HHHHHHHHHHHHHHHHTTCS----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccCC----------------------------CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCC
Confidence 99999999999999886442 25899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccC-c-cHHHHHHHHcCCC-----
Q psy11203 313 DAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQE-K-SDELLNEINKGTE----- 378 (438)
Q Consensus 313 ~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~-~-~~~l~~~l~~~~~----- 378 (438)
+++.++.+++||++||+||||+||++||++++ +.|.| +||.|+|++++++.. | .+++.+++.+...
T Consensus 202 ~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~ 281 (352)
T 3nf2_A 202 DERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFA 281 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccC
Confidence 99999999999999999999999999999983 45777 599999999999974 4 2356666765321
Q ss_pred CCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHhh
Q psy11203 379 SVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKE-SDARTALSNIIVAMGS 437 (438)
Q Consensus 379 ~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~-s~ar~~L~~l~~~v~~ 437 (438)
..+++++++++++|+++|++++|++++++|.++|++.|+.+|+ +++|+.|.+|++++++
T Consensus 282 ~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~~~ 341 (352)
T 3nf2_A 282 NFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVV 341 (352)
T ss_dssp GCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2578899999999999999999999999999999999999996 8899999999999864
No 6
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=3.7e-64 Score=505.73 Aligned_cols=308 Identities=16% Similarity=0.208 Sum_probs=276.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCC-CCcchhhHHhhhcchHHH
Q psy11203 83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGH-LNVDEMEEDKAAGVLHSQ 160 (438)
Q Consensus 83 ~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~-~~~~~~~~~~~~~i~~~~ 160 (438)
+.+.+..|+++++.|+..|++.+.+.+|.+.++..|+. .||| |+||+||+++++ +|+ .+ .+.+
T Consensus 14 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK--rlRp~l~l~~~~-~g~~~~------------~~~~ 78 (334)
T 3pko_A 14 LWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGK--LLRPGYFYLFST-FGNAAT------------PAQL 78 (334)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHCCC--CHHHHHHHHHHT-TCSCCC------------HHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCC--cHHHHHHHHHHH-HcCCCC------------HHHH
Confidence 34555678999999999999999999999999876655 5666 999999999999 565 21 2678
Q ss_pred HHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHH
Q psy11203 161 RALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-QHLVELMSGAVRDLT 239 (438)
Q Consensus 161 ~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-~~v~~~~s~~i~~l~ 239 (438)
.++|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++..+ +++++.+++++.+|+
T Consensus 79 ~~~A~aiEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (334)
T 3pko_A 79 QAGAAAIEILHVGTLIHDDVIDDSP-TRRGV-RTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRIL 156 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCCCCC-CcCCC-ccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 99999 99999999999999999999999999999876 899999999999999
Q ss_pred HHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy11203 240 ESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQ 319 (438)
Q Consensus 240 ~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~ 319 (438)
+||++|+.+..+. +.++++|++++++|||+||+.||++|++++|++++.++.
T Consensus 157 ~Gq~~dl~~~~~~----------------------------~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~ 208 (334)
T 3pko_A 157 QGELHQMDLNYRE----------------------------DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDR 208 (334)
T ss_dssp HHHHHHHHTTTCT----------------------------TCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhccCC----------------------------CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999875432 258899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCC-----CCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy11203 320 GYQFGKHLALAWQACLDLEPFTSNYA-----PGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIV 392 (438)
Q Consensus 320 l~~fG~~LGiAFQi~DDllD~~~d~~-----~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v 392 (438)
+++||++||+||||+||++|+++++. .|.| +||.|+|++++++..+ +++.+++.+. ...+++++++++++|
T Consensus 209 l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~-~~l~~~l~~~-~~~~~~~~~~i~~li 286 (334)
T 3pko_A 209 TRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAP-RDFHKLLKKK-QAMTLEDIKHVQALV 286 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSH-HHHHHHHTTG-GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCc-HHHHHHHhcC-CCCCHHHHHHHHHHH
Confidence 99999999999999999999999853 2445 5999999999999865 3677777432 236789999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 393 SKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 393 ~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++|++++|++++++|.++|++.|+.||++++|+.|..+++++.+
T Consensus 287 ~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 331 (334)
T 3pko_A 287 AQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLR 331 (334)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTT
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999864
No 7
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-63 Score=500.11 Aligned_cols=310 Identities=16% Similarity=0.178 Sum_probs=273.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHH
Q psy11203 83 FLSLRWLLSDEIANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQR 161 (438)
Q Consensus 83 ~~~l~~ll~~el~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~ 161 (438)
+..+...+.+++..|+..|++.+.+. +|.+.++..|+...||| |+||+||+++++++|+.. +.+.
T Consensus 4 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGK-rlRp~l~l~~~~~~g~~~-------------~~~~ 69 (342)
T 1wy0_A 4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGK-RVRPFVVLTSTEAVGGDP-------------LRAI 69 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCC-CHHHHHHHHHTTTTTSCG-------------GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHcCCCH-------------HHHH
Confidence 34566788999999999999999887 88999987776544444 999999999999988651 3568
Q ss_pred HHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL-----RNQHLVELMSGAVR 236 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l-----~~~~v~~~~s~~i~ 236 (438)
++|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||..+++. .++++++.+++++.
T Consensus 70 ~~A~avEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1wy0_A 70 YPAVAIELIHNYSLVHDDIMDMDE-TRRGK-PTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASN 147 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC-CSTTS-CCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccCCC-CCCCC-CccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999 99999 999999999999999999999999999998 56789999999999
Q ss_pred HHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Q psy11203 237 DLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAEL 316 (438)
Q Consensus 237 ~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~ 316 (438)
+|++||++|+.+..+. +.++++|++++++|||+||+.||++|++++|++++.
T Consensus 148 ~~~~GQ~~dl~~~~~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 199 (342)
T 1wy0_A 148 ELCEGQARDLEFEKKS----------------------------TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEY 199 (342)
T ss_dssp HHHHHHHHHHHHTTCS----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHcccCC----------------------------CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999886432 248899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCC---------
Q psy11203 317 QEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESV--------- 380 (438)
Q Consensus 317 ~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~--------- 380 (438)
++.+++||.+||+||||+||++|+++++ +.|.|+ ||.|+|++++++..+. +.++.+.+.....
T Consensus 200 ~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~-~~~~~l~~~~~~~~~~~~~~g~ 278 (342)
T 1wy0_A 200 IKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADE-KDKQRFLKIFGKYAGDVKGRGI 278 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCH-HHHHHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCH-hHHHHHHHHHcccccccccccc
Confidence 9999999999999999999999999983 457774 9999999999997542 3344444444322
Q ss_pred ----CHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 381 ----TNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 381 ----~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++++++++++|+++|+++++++++++|.++|++.|+.||++++++.|..+++++.+
T Consensus 279 ~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~ 339 (342)
T 1wy0_A 279 IEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVE 339 (342)
T ss_dssp ---CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999999999999864
No 8
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=3.2e-63 Score=502.12 Aligned_cols=314 Identities=25% Similarity=0.398 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCC--CCcchHHHHHHHHHHHhCCCC-cchhhH---HhhhcchHHHHH
Q psy11203 89 LLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGR--NNMQAWGLIVLLISKAAGHLN-VDEMEE---DKAAGVLHSQRA 162 (438)
Q Consensus 89 ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~g--kklr~RplLvLL~s~a~g~~~-~~~~~~---~~~~~i~~~~~~ 162 (438)
+++++++.|+.+|++.+.+.+|.+.++..|++..| || |+||+||+++++++|+.. .+.... ....++.+.++.
T Consensus 13 ~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GK-rlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (348)
T 3apz_A 13 LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGK-QFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRG 91 (348)
T ss_dssp TTHHHHHHHHHGGGGCCCCCCC------------CCHHH-HHHHHHHHHHHTTSCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHH
Confidence 57789999999999999999999999888776543 44 999999999999988641 000000 000112356789
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESE 242 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge 242 (438)
+|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||..+++++++++++.+++++.+|++||
T Consensus 92 ~A~avEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ 169 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLDDAD-TRRGV-GSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGE 169 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCC-CCCCC-CcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy11203 243 FLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQ 322 (438)
Q Consensus 243 ~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~ 322 (438)
++|+.+..+. ..++++|++++++|||+||+.+|++|++++|++++..+.+++
T Consensus 170 ~~dl~~~~~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~ 221 (348)
T 3apz_A 170 TMEITSSTEQ----------------------------RYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFE 221 (348)
T ss_dssp HHHHTCCHHH----------------------------HTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHhccCC----------------------------CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 9999764321 147899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q psy11203 323 FGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKG 395 (438)
Q Consensus 323 fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~s 395 (438)
||++||+||||+||++||++++ +.|.| +||.|+|++|+++..| ++.+++.+... +++++++++++|+++
T Consensus 222 ~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~--~~~~~l~~~~~--~~~~~~~~~~~i~~~ 297 (348)
T 3apz_A 222 YGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFP--QLREVVDQVEK--DPRNVDIALEYLGKS 297 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCT--THHHHHHTTTT--CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCH--HHHHHHHhccC--CHHHHHHHHHHHHHc
Confidence 9999999999999999999984 34666 5999999999999877 67778876653 467899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccCCch------HHHHHHHHHHHHhh
Q psy11203 396 PGMRLTKQLQKQHSQQAMKVLQVFKESD------ARTALSNIIVAMGS 437 (438)
Q Consensus 396 g~ie~a~~~~~~~~~kA~~~L~~lp~s~------ar~~L~~l~~~v~~ 437 (438)
|++++|++++++|.++|++.|+.||+++ +|+.|.+|++++.+
T Consensus 298 g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 345 (348)
T 3apz_A 298 KGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVIT 345 (348)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875 89999999999864
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.5e-62 Score=492.89 Aligned_cols=305 Identities=18% Similarity=0.234 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHH
Q psy11203 85 SLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALA 164 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA 164 (438)
++...+.++++.|+.+|.+.+.+.+|.+.++.+|+...||| |+||+|++++++++|+.. +.+.++|
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK-r~Rp~l~l~~~~~~g~~~-------------~~~~~~A 70 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSGGK-RVRPMFVLLSGFLNDTQK-------------DDLIRTA 70 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSCCC-CHHHHHHHHHHTTSSCCC-------------HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCh-------------HHHHHHH
Confidence 45567899999999999999999999999988776655545 999999999999988651 5678999
Q ss_pred HHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHh
Q psy11203 165 EVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFL 244 (438)
Q Consensus 165 ~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~l 244 (438)
+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|++.+++.+++++++.+++++.++++||++
T Consensus 71 ~avEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~ 148 (325)
T 3aqb_B 71 VSLELVHMASLVHDDYIDNSD-MRRGN-TSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFD 148 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-EETTE-ECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCC-CCCCC-CCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999 9999999999999999999999999999998899999999999999999999
Q ss_pred hhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy11203 245 GRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFG 324 (438)
Q Consensus 245 ql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG 324 (438)
|+.+..+. +.++++|++++++|||+||+.||++|++++|++++..+.+++||
T Consensus 149 dl~~~~~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g 200 (325)
T 3aqb_B 149 QMADRFNY----------------------------PVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFG 200 (325)
T ss_dssp HHHTTTCC----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHcccCC----------------------------CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99876432 24889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCcc---HHHH---HHHHcCCCCCCHHHHHHHHHH
Q psy11203 325 KHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKS---DELL---NEINKGTESVTNIDYKKVYNI 391 (438)
Q Consensus 325 ~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~---~~l~---~~l~~~~~~~~~~d~~~i~~~ 391 (438)
.++|+||||+||++|+++++ +.|.| +||.|+|++++++..+. +.+. +.+.+. .+++++++++++
T Consensus 201 ~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~i~~~ 277 (325)
T 3aqb_B 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTST---SDDEVYQYIVSQ 277 (325)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCC---CCHHHHHHHHHH
Confidence 99999999999999999983 45777 59999999999987431 1233 333221 237899999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 392 VSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 392 v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++ ++++|++.+++|.++|++.|+.||++++|+.|..+++++.+
T Consensus 278 ~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 322 (325)
T 3aqb_B 278 VKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLK 322 (325)
T ss_dssp HHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999999999999999999864
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.6e-61 Score=490.58 Aligned_cols=316 Identities=15% Similarity=0.145 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 84 LSLRWLLSDEIANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 84 ~~l~~ll~~el~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
..+..+++..+..|+..|++.+.+. +|.+.++..|+...||| |+||+||+++++++|+.. +.++.
T Consensus 4 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~~-------------~~~~~ 69 (358)
T 4dhd_A 4 DVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGK-RLRPLLTLAAAEAVSGQW-------------RPALP 69 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCC-CHHHHHHHHHHHHHHSCC-------------GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-------------HHHHH
Confidence 4566677888999999999999887 78899988777655555 999999999999998762 46788
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-QHLVELMSGAVRDLTES 241 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-~~v~~~~s~~i~~l~~G 241 (438)
+|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|++.++...+ .++++.+++++.++++|
T Consensus 70 ~A~aiEliH~asLiHDDI~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~G 147 (358)
T 4dhd_A 70 AAAIVELIHNYSLIYDDIIDRGD-VRRGL-PTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEG 147 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCccccCCC-CcCCC-ccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999 99999999999999999999999999987654 68999999999999999
Q ss_pred HHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCC-CccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy11203 242 EFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPM-TPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQG 320 (438)
Q Consensus 242 e~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l 320 (438)
|++|+.+..+.+. +.+ .+. .+. +.++++|++++++|||+||+.||++|++++|++++.++.+
T Consensus 148 Q~ldl~~~~~~~~-----------dp~--~~~----~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l 210 (358)
T 4dhd_A 148 ERLDILFEAAGRS-----------DPY--FVQ----ARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAA 210 (358)
T ss_dssp HHHHHHTBSSCCC-----------CHH--HHH----TCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHccccccc-----------ccc--ccc----cCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999988632210 000 000 011 3589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCC-hHHHHHHhccC-cc--HHHHHHHHcCCCCCCHHHHHHHH
Q psy11203 321 YQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLT-SAPVMFHLEQE-KS--DELLNEINKGTESVTNIDYKKVY 389 (438)
Q Consensus 321 ~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~-TlPvl~al~~~-~~--~~l~~~l~~~~~~~~~~d~~~i~ 389 (438)
++||.+||+||||+||++|+++++ +.|.| +||. |+|++++++.. +. +.+.+.+.+.. .+++++++++
T Consensus 211 ~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~--~~~~~~~~i~ 288 (358)
T 4dhd_A 211 WNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREV--VEEADVREAV 288 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCC--CCHHHHHHHH
Confidence 999999999999999999999984 34666 4999 99999999974 32 35666676543 5789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 390 NIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 390 ~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++|+++|++++|++++++|.++|++.|+.||+++ .|.+|++++++
T Consensus 289 ~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~---~L~~la~~~~~ 333 (358)
T 4dhd_A 289 ALLDSVGAREEALRLAARYREEAERHLAKIPNNG---TLKELLDFIVA 333 (358)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH---HHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHh
Confidence 9999999999999999999999999999999887 89999999864
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-60 Score=480.04 Aligned_cols=299 Identities=15% Similarity=0.065 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHH
Q psy11203 91 SDEIANVALHLRKLVGSNHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEM 169 (438)
Q Consensus 91 ~~el~~v~~~l~~~l~s~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avEl 169 (438)
......|+..|.+.+.+.+|.+.++..|+. .||| |+||+|++++++++|+. .+.+..+|+++||
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGK--rlRp~l~l~~~~~~~~~-------------~~~~~~~A~avEl 70 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGK--MLRGLLTVYSALAHGAP-------------LEAGLEAATALEL 70 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHcCCC-------------HHHHHHHHHHHHH
Confidence 345567888899999888899999877665 5555 99999999999999875 2567899999999
Q ss_pred HHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHHHHHHHHHHHHh
Q psy11203 170 IRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-----QHLVELMSGAVRDLTESEFL 244 (438)
Q Consensus 170 IHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-----~~v~~~~s~~i~~l~~Ge~l 244 (438)
||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|++.+++..+ +++++.+++++.+|++||++
T Consensus 71 iH~asLihDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~ 148 (330)
T 1wmw_A 71 FQNWVLVHDDIEDGSE-ERRGR-PALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHL 148 (330)
T ss_dssp HHHHHHHHHHHHHTCC-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCC-CCCCC-CccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999 99999999999999999999999999998754 78999999999999999999
Q ss_pred hhhc-ccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Q psy11203 245 GRRD-LQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAGQDAELQEQGYQ 322 (438)
Q Consensus 245 ql~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag~~~~~~~~l~~ 322 (438)
|+.+ ..+.. +.++++|++++++|||+| |+.||++|++++|++++.. +++
T Consensus 149 dl~~~~~~~~---------------------------~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~ 199 (330)
T 1wmw_A 149 DLLWTLGGTF---------------------------DLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEE 199 (330)
T ss_dssp HHHHHHSSSC---------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHH
T ss_pred HHHhcccCCC---------------------------CCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHH
Confidence 9987 64411 248899999999999999 9999999999999987766 999
Q ss_pred HHHHHHHHHHHHhhhccccCCC----CCCCC--CCCChHHHHHHhccCcc---HHHHHHHHcCCCCCC--HHHHHHHHHH
Q psy11203 323 FGKHLALAWQACLDLEPFTSNY----APGTI--FNLTSAPVMFHLEQEKS---DELLNEINKGTESVT--NIDYKKVYNI 391 (438)
Q Consensus 323 fG~~LGiAFQi~DDllD~~~d~----~~g~d--~gk~TlPvl~al~~~~~---~~l~~~l~~~~~~~~--~~d~~~i~~~ 391 (438)
||.+||+||||+||++|+++++ +.|.| +||.|+|++++++..+. +.+.+.+.+.. .+ ++++++++++
T Consensus 200 ~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 277 (330)
T 1wmw_A 200 GGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPR--EAKPEAEVGWLLER 277 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCG--GGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcc--cCCCHHHHHHHHHH
Confidence 9999999999999999999974 34666 49999999999997542 12333443221 22 6899999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHhh
Q psy11203 392 VSKGPGMRLTKQLQKQHSQQAMKVLQ----VFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 392 v~~sg~ie~a~~~~~~~~~kA~~~L~----~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++|++++|++++++|.++|++.|+ .||++++|+.|..+++++.+
T Consensus 278 i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~ 327 (330)
T 1wmw_A 278 LLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVE 327 (330)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 99999999999999999864
No 12
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.8e-60 Score=473.63 Aligned_cols=294 Identities=14% Similarity=0.110 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHhCC-CCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHH
Q psy11203 92 DEIANVALHLRKLVGS-NHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMI 170 (438)
Q Consensus 92 ~el~~v~~~l~~~l~s-~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElI 170 (438)
+-+..|+..|.+.+.. ..|.+.. .+.+..||| |+||+||+++++. +.. . -..++++++|+++|||
T Consensus 4 ~~~~~i~~~l~~~~~~~~~~~~~~-~y~~~~gGK--rlRp~l~l~~~~~-~~~-------~---~~~~~~~~~A~aiEli 69 (315)
T 3tc1_A 4 KQLKAIQNKIASWIKEIESGFIDE-LFSKIGPSK--MLRSKLMLALLNE-KTD-------A---ILLDKALNLCTIVEMI 69 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH-HHTTCCCCC--CHHHHHHHTTCCT-TCC-------H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHH-HHHhcCCcc--cHHHHHHHHHhcc-Ccc-------c---cchhhHHHHHHHHHHH
Confidence 3466777778777763 3343333 222345566 9999999998883 222 0 0125778999999999
Q ss_pred HHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11203 171 RTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQ 250 (438)
Q Consensus 171 HtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~ 250 (438)
|+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||..+++++ +++++.+++++.++++||++|+.+..
T Consensus 70 H~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~ 146 (315)
T 3tc1_A 70 QTASLLHDDVIDKAT-MRRKL-PSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGE 146 (315)
T ss_dssp HHHHHHHHHTC------------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCC-CcCCC-ccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 99999 9999999999999999999999999999987 89999999999999999999998864
Q ss_pred CCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy11203 251 NNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALA 330 (438)
Q Consensus 251 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiA 330 (438)
+. +.++++|++++++|||+||+.||++|++++|++ .+.+++||++||+|
T Consensus 147 ~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~a 195 (315)
T 3tc1_A 147 CF----------------------------NSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMA 195 (315)
T ss_dssp SC----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHH
T ss_pred CC----------------------------CCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHH
Confidence 32 258899999999999999999999999999998 78999999999999
Q ss_pred HHHHhhhccccCCC-----CCCCCC--CCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHH
Q psy11203 331 WQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTK 402 (438)
Q Consensus 331 FQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~ 402 (438)
|||+||++|+++++ +.|.|+ ||.|+|++++++. +| +.++.|.+.....+++++++++++|+++|++++|+
T Consensus 196 FQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~--~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~ 273 (315)
T 3tc1_A 196 FQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQ--HDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETL 273 (315)
T ss_dssp HHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCH--HHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCH--HHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHH
Confidence 99999999999984 346674 9999999999997 44 33344443333237899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy11203 403 QLQKQHSQQAMKVLQVFKESDARTALSNIIVAM 435 (438)
Q Consensus 403 ~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v 435 (438)
+++++|.++|++.|+.||++++|+.|.+|++++
T Consensus 274 ~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~ 306 (315)
T 3tc1_A 274 KTAQVYSKKALEAIKGENNLILEKLAQDVISRT 306 (315)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765
No 13
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=5.5e-60 Score=468.75 Aligned_cols=276 Identities=13% Similarity=0.160 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCC-CCcchhhHHhhhcchHHHHHHHHHHH
Q psy11203 90 LSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGH-LNVDEMEEDKAAGVLHSQRALAEVTE 168 (438)
Q Consensus 90 l~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~-~~~~~~~~~~~~~i~~~~~~lA~avE 168 (438)
++++++.|+..|++.+.+.+| ++.+|+...||| |+||+|++++++++|+ +. +.+.++|+++|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~gGK-rlRp~l~l~~~~~~g~~~~-------------~~~~~~A~avE 71 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLYGK-MLRVRLSILSFKNRGVEIG-------------EDAISSLAALE 71 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCCCC-CHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCCCC-cHHHHHHHHHHHHcCCCCh-------------hHHHHHHHHHH
Confidence 678899999999999987777 666665544444 9999999999999987 41 56788999999
Q ss_pred HHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11203 169 MIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRD 248 (438)
Q Consensus 169 lIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~ 248 (438)
|||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.+++++++.+++++.++++||++|+.+
T Consensus 72 liH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 149 (299)
T 1v4e_A 72 LVHLASLLHDDVIDGAR-FRRGK-ETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLS 149 (299)
T ss_dssp HHHHHHHHHHHHHHTCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCC-CCCCC-CchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 99999999999999999 99999 99999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy11203 249 LQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLA 328 (438)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LG 328 (438)
..+. .++++|++++++|||+||+.||++|++++|+++ +.+++||.+||
T Consensus 150 ~~~~-----------------------------~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG 197 (299)
T 1v4e_A 150 RYKP-----------------------------ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIG 197 (299)
T ss_dssp TTSC-----------------------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHH
T ss_pred cCCC-----------------------------CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHH
Confidence 5432 378999999999999999999999999999887 89999999999
Q ss_pred HHHHHHhhhccccCC----CCCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHH
Q psy11203 329 LAWQACLDLEPFTSN----YAPGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTK 402 (438)
Q Consensus 329 iAFQi~DDllD~~~d----~~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~ 402 (438)
+||||+||++|++++ ++.|.|+ ||.|+|++++++..+ .+.+++.+ +++++++++++++|++++|+
T Consensus 198 ~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~--~l~~~l~~-------~~~~~~~~~l~~~g~~~~~~ 268 (299)
T 1v4e_A 198 TIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFP--EARQMFEN-------RDWSGLMSFMREKGILKECE 268 (299)
T ss_dssp HHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCH--HHHHHHHT-------TCHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhCh--HHHHHHhH-------HHHHHHHHHHHHCCcHHHHH
Confidence 999999999999998 2356674 999999999999866 36666643 46889999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCchHH
Q psy11203 403 QLQKQHSQQAMKVLQVFKESDAR 425 (438)
Q Consensus 403 ~~~~~~~~kA~~~L~~lp~s~ar 425 (438)
+++++|.++|++.|+.||++..|
T Consensus 269 ~~~~~~~~~A~~~L~~l~~~~~k 291 (299)
T 1v4e_A 269 ETLKVLVKNVIIENSWLRDFVDG 291 (299)
T ss_dssp HHHHHHHHHHHHHCGGGCCC---
T ss_pred HHHHHHHHHHHHHHHhhhhhhHH
Confidence 99999999999999999987653
No 14
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=3e-59 Score=476.84 Aligned_cols=313 Identities=13% Similarity=0.130 Sum_probs=249.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchHH----HHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchH
Q psy11203 83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLK----TAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLH 158 (438)
Q Consensus 83 ~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~----~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~ 158 (438)
...++..|+++|..+-......+.+.+|.+. .+.+|+..||| |+||+||+++++++|+.... ....+
T Consensus 18 ~~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGK--rlRp~l~l~~~~~~g~~~~~-------~~~~~ 88 (380)
T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGK--RIRPLYAWAGFLAAQGHKNS-------SEKLE 88 (380)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCC--CHHHHHHHHHHHHHHTTSCC-------SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHcCCCccc-------cCCHH
Confidence 3445666777777777666665555466533 34566777777 99999999999998763000 00136
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhh----------------cChHHHHHHHHHHHHHHHHHHHcc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMT----------------FGNKIALLSGDYLLSNSCSELAAL 222 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~----------------fGn~~AVLaGD~Lla~A~~~La~l 222 (438)
..+++|+++||||+||||||||||+|+ +|||+ ||+|.+ ||+++|||+||||+++|++++++.
T Consensus 89 ~~~~~AaaiEliH~asLIHDDImD~s~-~RRG~-pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 89 SVLDAAASLEFIQACALIHDDIIDSSD-TRRGA-PTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcCCCC-CCCCC-cchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999 99999 999997 599999999999999999999986
Q ss_pred Cc-----HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHH
Q psy11203 223 RN-----QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGS 297 (438)
Q Consensus 223 ~~-----~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTas 297 (438)
+. .++++.++.++.++++||++|+.+..+. ..++++|++++++|||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~----------------------------~~s~~~y~~ii~~KTa~ 218 (380)
T 3lk5_A 167 GLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHA----------------------------NESVELADSVNRFKTAA 218 (380)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------------------CCCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------------------------CCCHHHHHHHHHhhchH
Confidence 53 3577888888899999999999986543 14789999999999999
Q ss_pred H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccC----c
Q psy11203 298 L-LGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQE----K 365 (438)
Q Consensus 298 L-~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~----~ 365 (438)
| |+.||++|++++|++++.++.+++||++||+||||+||++||++++ |.|.| +||.|+|++++++.. |
T Consensus 219 L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~ 298 (380)
T 3lk5_A 219 YTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSP 298 (380)
T ss_dssp HHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCCh
Confidence 9 8999999999999999999999999999999999999999999983 45767 599999999999863 3
Q ss_pred c--HHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccC-CchHHHHHHHHHHHHhh
Q psy11203 366 S--DELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFK-ESDARTALSNIIVAMGS 437 (438)
Q Consensus 366 ~--~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp-~s~ar~~L~~l~~~v~~ 437 (438)
. +.+.+.+.+ ..+++++++++++|+++|+++++++++++|.++|++.|+.+| ++++|+.|.+|+++++.
T Consensus 299 ~~~~~L~~~l~~---~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~ 370 (380)
T 3lk5_A 299 EAATAIRAGVGK---VTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTE 370 (380)
T ss_dssp HHHHHHHHHTTT---CCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 1 133333321 257899999999999999999999999999999999999999 57899999999998864
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=2.2e-60 Score=479.63 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=227.6
Q ss_pred HHHHHHHHh---CCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHH
Q psy11203 97 VALHLRKLV---GSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTS 173 (438)
Q Consensus 97 v~~~l~~~l---~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtA 173 (438)
|+..+.+.. .+.+|.+.++..|+...||| |+||+||+++++++|.. .+.++++|+++||||+|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~l~l~~~~~~~~~-------------~~~~~~~A~avEliH~a 75 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKPGK-NFRLNLIVQINRVMNLP-------------KDQLAIVSQIVELLHNS 75 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCC-CHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHHH
Confidence 445555544 23457788888777655555 99999999999999865 15678899999999999
Q ss_pred HhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHH-----HHHHHHHHHHHHHHHHHhhhhc
Q psy11203 174 HLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQH-----LVELMSGAVRDLTESEFLGRRD 248 (438)
Q Consensus 174 sLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~-----v~~~~s~~i~~l~~Ge~lql~~ 248 (438)
|||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|+..++++++++ +++.+++++.++++||++|+.+
T Consensus 76 sLiHDDI~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~ 153 (340)
T 2e8v_A 76 SLLIDDIEDNAP-LRRGQ-TTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYW 153 (340)
T ss_dssp HHHHHHHHTTCS-EETTE-ECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCC-CCCCC-cchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 99999 9999999999999999999999999999998776 9999999999999999999987
Q ss_pred ccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy11203 249 LQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLA 328 (438)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LG 328 (438)
..+.+. ...++++|++++++|||+||+.+|++|++++|+++ ..+.+++||++||
T Consensus 154 ~~~~~~-------------------------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG 207 (340)
T 2e8v_A 154 RDFLPE-------------------------IIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLG 207 (340)
T ss_dssp HHSTTS-------------------------CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHH
T ss_pred hccccc-------------------------CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHH
Confidence 654210 02488999999999999999999999999999987 5889999999999
Q ss_pred HHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCcc-------HHHHHHHHcCCCCCCHHHHHHHHHHHH-
Q psy11203 329 LAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKS-------DELLNEINKGTESVTNIDYKKVYNIVS- 393 (438)
Q Consensus 329 iAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~-------~~l~~~l~~~~~~~~~~d~~~i~~~v~- 393 (438)
+||||+||++||++++ +.|.| +||.|+|++|+++..+. +.+.+++.+.. .+....++++++|+
T Consensus 208 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~l~~ 285 (340)
T 2e8v_A 208 IIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRT--SDKDIKLKLIQILEF 285 (340)
T ss_dssp HHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 9999999999999974 34666 49999999999987431 23666666543 23333448999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHH-----hhccCCch-----HHHHHHHHHHHHhhC
Q psy11203 394 KGPGMRLTKQLQKQHSQQAMKV-----LQVFKESD-----ARTALSNIIVAMGSI 438 (438)
Q Consensus 394 ~sg~ie~a~~~~~~~~~kA~~~-----L~~lp~s~-----ar~~L~~l~~~v~~~ 438 (438)
++|++++|++++++|.++|++. |+.||+++ +|+.|.++++++.++
T Consensus 286 ~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~~~~~~L~~l~~~l~~~ 340 (340)
T 2e8v_A 286 DTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDHLSEL 340 (340)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred hcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999 99999998 999999999998753
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.4e-59 Score=466.27 Aligned_cols=284 Identities=16% Similarity=0.140 Sum_probs=244.9
Q ss_pred HHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCc
Q psy11203 101 LRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGI 180 (438)
Q Consensus 101 l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDI 180 (438)
+++++.+.+|.+.++.+|+...||| |+||+||+++++++|.. .+.+.++|+++||||+||||||||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~gGK-r~Rp~l~l~~~~~~~~~-------------~~~~~~~A~avEliH~asLiHDDi 67 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLPGK-QVRTKLSQAFNHWLKVP-------------EDKLQIIIEVTEMLHNASLLIDDI 67 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSSCH-HHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 5788888899999998887765556 99999999999998865 156789999999999999999999
Q ss_pred cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccC
Q psy11203 181 VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLT 260 (438)
Q Consensus 181 iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~ 260 (438)
||+|+ +|||+ ||+|.+||+++|||+||||+++|++.+++++++++++.+++.+.+|++||++|+.+..+..
T Consensus 68 ~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~------- 138 (301)
T 2q80_A 68 EDNSK-LRRGF-PVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYT------- 138 (301)
T ss_dssp HHTCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred cCCCC-CCCCC-cchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------
Confidence 99999 99999 9999999999999999999999999999998889999999999999999999998754321
Q ss_pred CCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11203 261 TKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPF 340 (438)
Q Consensus 261 ~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~ 340 (438)
..++++|++++++|||+||+.+|++|++++|.++ .+++||.+||+||||+||++|+
T Consensus 139 --------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~ 194 (301)
T 2q80_A 139 --------------------CPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANL 194 (301)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 1478999999999999999999999999999873 5899999999999999999999
Q ss_pred cCCC-----CCCCCC--CCChHHHHHHhccCc-cHHHHHHHHcCCCCCCHHHHHH-HHHHHHcCChHHHHHHHHHHHHHH
Q psy11203 341 TSNY-----APGTIF--NLTSAPVMFHLEQEK-SDELLNEINKGTESVTNIDYKK-VYNIVSKGPGMRLTKQLQKQHSQQ 411 (438)
Q Consensus 341 ~~d~-----~~g~d~--gk~TlPvl~al~~~~-~~~l~~~l~~~~~~~~~~d~~~-i~~~v~~sg~ie~a~~~~~~~~~k 411 (438)
++++ +.|.|+ ||.|+|++++++..| .+++.+.+.+.. . +.++.+ ++++|+++|++++|++++++|.++
T Consensus 195 ~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~--~-~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~ 271 (301)
T 2q80_A 195 HSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT--E-NIDIKKYCVHYLEDVGSFEYTRNTLKELEAK 271 (301)
T ss_dssp HCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTC--C-CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCC--C-CHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 9984 346664 999999999999755 235777776543 2 345554 999999999999999999999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 412 AMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 412 A~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|++.|+.||++++ |..+++++.+
T Consensus 272 A~~~L~~l~~~~~---L~~l~~~l~~ 294 (301)
T 2q80_A 272 AYKQIDARGGNPE---LVALVKHLSK 294 (301)
T ss_dssp HHHHHHHTTCCHH---HHHHHHHHHT
T ss_pred HHHHHHcCCCCHH---HHHHHHHHHH
Confidence 9999999999885 7888877753
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.6e-58 Score=456.90 Aligned_cols=267 Identities=21% Similarity=0.256 Sum_probs=230.4
Q ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHH
Q psy11203 95 ANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTS 173 (438)
Q Consensus 95 ~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtA 173 (438)
..|+..|.+.+... .|.+.++..|+...||| |+||+||+++++++|+.. +...++|+++||||+|
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~~-------------~~~~~~A~avEliH~a 77 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGK-RIRPIILLLVSEICSGSY-------------SRSLNAALAVEMMHSA 77 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHSCC-------------GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHHHHH
Confidence 56777777777653 37788888777655555 999999999999998762 4568899999999999
Q ss_pred HhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q psy11203 174 HLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNP 253 (438)
Q Consensus 174 sLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~ 253 (438)
|||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.+ +++++.+++++.+|++||++|+.+..+.
T Consensus 78 sLIHDDi~D~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~- 153 (295)
T 3ipi_A 78 SLIHDDLLDQGL-VRRNL-PSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLEDES- 153 (295)
T ss_dssp HHHHHHHHHHHT-SCTTS-CCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHCcCcCCCC-CCCCC-ccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHccCCC-
Confidence 999999999999 99999 9999999999999999999999999998875 6899999999999999999999875432
Q ss_pred CCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q psy11203 254 LPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQA 333 (438)
Q Consensus 254 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi 333 (438)
.++++|++++++|||+||+.||++|++++|++++.++.+++||++||+||||
T Consensus 154 ----------------------------~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI 205 (295)
T 3ipi_A 154 ----------------------------FGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQI 205 (295)
T ss_dssp ------------------------------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy11203 334 CLDLEPFTSNYAPGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQ 411 (438)
Q Consensus 334 ~DDllD~~~d~~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~k 411 (438)
+||++||++++. |.| .||.|+|++|+++..+ .+++++|++.+++|.++
T Consensus 206 ~DDilD~~~~~~-gkd~~~gk~Tlp~l~al~~~~-----------------------------~~~le~a~~~a~~~~~~ 255 (295)
T 3ipi_A 206 VDDILEFLEVVE-GKESKFTSETLPHIYMKSTSK-----------------------------EEALKKSIDCVKLHVAA 255 (295)
T ss_dssp HHHHHHHHHHHH-C-------CCHHHHHTTTSCH-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcc-CCCcccCcccHHHHHHHhcCc-----------------------------hhHHHHHHHHHHHHHHH
Confidence 999999998753 444 6999999999986532 12689999999999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 412 AMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 412 A~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|++.|+.||++++|+.|.+++++++.
T Consensus 256 A~~~L~~lp~~~~~~~L~~l~~~~~~ 281 (295)
T 3ipi_A 256 AKETLETFRECPARDKLFQITDYITV 281 (295)
T ss_dssp HHHHHTTSCCSHHHHHHHHHHHHTTG
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999863
No 18
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=2.1e-57 Score=461.80 Aligned_cols=308 Identities=10% Similarity=-0.034 Sum_probs=249.6
Q ss_pred chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCC
Q psy11203 110 PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYS 189 (438)
Q Consensus 110 p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RR 189 (438)
+.+..+.+|...||| |+||+||+++++++|+.... +++....+.+.+..+|+++||||+||||||||||+|+ +||
T Consensus 34 ~~l~~~~~y~~~gGK--rlRp~l~l~~~~~~~~~~~~--~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~-~RR 108 (362)
T 1yhl_A 34 RYLRIMMDTTCLGGK--YFRGMTVVNVAEGFLAVTQH--DEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSV-MRR 108 (362)
T ss_dssp HHHHHHHHHHHSSSC--CHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-EET
T ss_pred HHHHHHHHhhcCCcc--cHHHHHHHHHHHHhCCCcCC--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCC
Confidence 456778888887777 99999999999998764100 0010001234455588999999999999999999999 999
Q ss_pred CCCCchhhhcCh--HHHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCC
Q psy11203 190 EPVVLNDMTFGN--KIALLSGDYLLSNSCSELAAL-----RNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTK 262 (438)
Q Consensus 190 G~~pt~~~~fGn--~~AVLaGD~Lla~A~~~La~l-----~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~ 262 (438)
|+ ||+|..||+ ++||++||||+++|+.+++++ .++++++.+++++.++++||++|+.+..+ +.+..|...
T Consensus 109 G~-pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~-~~~~~~~~~- 185 (362)
T 1yhl_A 109 GK-PCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCD-SNKLDPEVA- 185 (362)
T ss_dssp TE-ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBC-GGGCCTTSC-
T ss_pred CC-ccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccc-ccccccccc-
Confidence 99 999999999 689999999999999999987 45789999999999999999999987510 000000000
Q ss_pred CCCCCchhhhhhccCCC-CCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11203 263 TSPDDSNQIMESLDELP-MTPALADWTTRNVLSAGSL-LGKSCKGTLKLAG-QDAELQEQGYQFGKHLALAWQACLDLEP 339 (438)
Q Consensus 263 ~~~~~y~~~~~~~~~~~-~~~t~e~yl~~i~~KTasL-~~~sc~~gailag-~~~~~~~~l~~fG~~LGiAFQi~DDllD 339 (438)
. .+... ...++++|++++++|||+| |+.||++|++++| ++++..+.+++||++||+||||+||++|
T Consensus 186 ---~--------~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD 254 (362)
T 1yhl_A 186 ---Q--------PMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD 254 (362)
T ss_dssp ---C--------CBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c--------ccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00000 0258999999999999999 9999999999999 8888899999999999999999999999
Q ss_pred ccCCC----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy11203 340 FTSNY----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAM 413 (438)
Q Consensus 340 ~~~d~----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~ 413 (438)
+++++ |.|.|+ ||.|+|++++++..+. +.++.|.+.....+++++++++++++++|+++++++++++|.++|+
T Consensus 255 ~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~ 333 (362)
T 1yhl_A 255 CFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANA-AQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVE 333 (362)
T ss_dssp HHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCH-HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHhCCChhhHhcCCchHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99983 467774 9999999999998542 3334444333323578999999999999999999999999999999
Q ss_pred HHhhccCCchHH--HHHHHHHHHHhh
Q psy11203 414 KVLQVFKESDAR--TALSNIIVAMGS 437 (438)
Q Consensus 414 ~~L~~lp~s~ar--~~L~~l~~~v~~ 437 (438)
+.|+.||++++| +.|..+++++.+
T Consensus 334 ~~L~~lp~~~~~~~~~L~~l~~~i~~ 359 (362)
T 1yhl_A 334 SLIEQLKVKSPTFAESVAVVWEKTHK 359 (362)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHh
Confidence 999999999999 999999999864
No 19
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.9e-56 Score=445.42 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 85 SLRWLLSDEIANVALHLRKLVGSN--HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~s~--~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
++...+......|+..|.+.+.+. +|.+.++..|+...||| |+||+||+++++++|+.. +....
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGK-rlRp~Lvl~~~~~~g~~~-------------~~~~~ 69 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGK-RIRPMLTYASAQLVGDIS-------------SLTDA 69 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHSCCC-------------HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhCCCH-------------HHHHH
Confidence 456678888999999999999875 67888888887754444 999999999999998762 67889
Q ss_pred HHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc------HHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN------QHLVELMSGA 234 (438)
Q Consensus 163 lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~------~~v~~~~s~~ 234 (438)
+|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++..+ .++++.++++
T Consensus 70 ~A~avEliH~aSLIHDDip~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a 147 (317)
T 4f62_A 70 SAAALESIHAYSLIHDDLPAMDNDE-LRRGK-PTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVA 147 (317)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCC---------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccCCC-CcCCC-ccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 99999 99999 99999999999999999999999999998742 2578888887
Q ss_pred H--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcC-
Q psy11203 235 V--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG- 311 (438)
Q Consensus 235 i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag- 311 (438)
+ .+|++||++|+.+..+. .++++|++++++|||+||+.||++|++++|
T Consensus 148 ~g~~~m~~GQ~lDl~~~~~~-----------------------------~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~ 198 (317)
T 4f62_A 148 SGRNGMITGQMIDLSSENKN-----------------------------ISLAELEQMHVHKTGALIKASVRMGALSTGQ 198 (317)
T ss_dssp HSTTTHHHHHHHHHHTSSSC-----------------------------CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC
T ss_pred HhhhhHHHhHHHHHhccCCC-----------------------------CCHHHHHHHHHhchHHHHHHHHHHHHHHcCC
Confidence 7 47999999999875321 478999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHH
Q psy11203 312 QDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNID 384 (438)
Q Consensus 312 ~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d 384 (438)
++++.++.+++||++||+||||+||++|+++++ +.|.| +||.|+|+++
T Consensus 199 a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------------------------- 253 (317)
T 4f62_A 199 VKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLL------------------------- 253 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHH-------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHH-------------------------
Confidence 899999999999999999999999999999984 34666 4999999998
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 385 YKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 385 ~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+++|++.+++|.++|++.|+.||+ .++.|.++++++.+
T Consensus 254 ------------gle~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~~~~ 292 (317)
T 4f62_A 254 ------------GLDGAKALVVRLHEQAIAQISEFGD--KSQPLTDLANYIID 292 (317)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHH
Confidence 4578899999999999999999996 47899999999864
No 20
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.9e-56 Score=448.94 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC--------CCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhc
Q psy11203 85 SLRWLLSDEIANVALHLRKLVGS--------NHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAG 155 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~s--------~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~ 155 (438)
.+...+++++..|+..|.+.+.+ .++.+.++.+|+. .||| |+||+|++++++++|+.
T Consensus 38 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGK--rlRP~L~l~~~~~~g~~------------ 103 (335)
T 2h8o_A 38 NFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGK--RLRPFLVIESVALLGGD------------ 103 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCS--CHHHHHHHHHHHHTTCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC------------
Confidence 45567888899999999999976 4678888877665 5565 99999999999999875
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc-------CcHH
Q psy11203 156 VLHSQRALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL-------RNQH 226 (438)
Q Consensus 156 i~~~~~~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l-------~~~~ 226 (438)
.+....+|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++. ...+
T Consensus 104 -~~~~~~~A~aiEliH~asLIHDDiPamD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~ 180 (335)
T 2h8o_A 104 -AEAGLHVGAALECLHCYSLVHDDLPAMDDDD-LRRGQ-PTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAA 180 (335)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCchhccCCC-cCCCC-CcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 146788999999999999999999 99999 99999 999999999999999999999999999997 2346
Q ss_pred HHHHHHHHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHH
Q psy11203 227 LVELMSGAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCK 304 (438)
Q Consensus 227 v~~~~s~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~ 304 (438)
+++.+++++ .+|++||++|+.+..+. .++++|++++++|||+||+.+|+
T Consensus 181 ~~~~ls~a~g~~~~~~GQ~lDl~~~~~~-----------------------------~~~~~y~~i~~~KTa~L~~~a~~ 231 (335)
T 2h8o_A 181 LVISLARAAGIGGMAGGQALDLAAEKKA-----------------------------PDEDGIITLQAMKTGALLRFACE 231 (335)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHccCCC-----------------------------CCHHHHHHHHHhchHHHHHHHHH
Confidence 889999998 89999999999876431 47899999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCC
Q psy11203 305 GTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGT 377 (438)
Q Consensus 305 ~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~ 377 (438)
+|++++|++++.++.+++||++||+||||+||++|+++++ +.|.| +||.|+|++++
T Consensus 232 ~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~----------------- 294 (335)
T 2h8o_A 232 AGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRG----------------- 294 (335)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHC-----------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH-----------------
Confidence 9999999999999999999999999999999999999984 34666 49999999984
Q ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 378 ESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 378 ~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++.+++|.++|++.|+.||+ .++.|.+|++++.+
T Consensus 295 --------------------le~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~i~~ 332 (335)
T 2h8o_A 295 --------------------EAWAREKLQEQVAEASELLAPYGE--KAAILIAAARFIAE 332 (335)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTGGGGG--GGHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHh
Confidence 467889999999999999999985 67899999999864
No 21
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.6e-56 Score=456.45 Aligned_cols=294 Identities=11% Similarity=0.037 Sum_probs=250.9
Q ss_pred chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCC
Q psy11203 110 PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYS 189 (438)
Q Consensus 110 p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RR 189 (438)
+.+.++.+|...||| |+||+||+++++++|+.. ..++ ..++.+..+|+++||||+||||||||||+|+ +||
T Consensus 64 ~~l~~~~~y~~~gGK--rlRp~l~l~~~~~~~~~~--~~~~----~~~~~a~~~A~avEliH~asLIHDDImD~s~-~RR 134 (374)
T 2qis_A 64 ARLKEVLEYNAIGGK--YNRGLTVVVAFRELVEPR--KQDA----DSLQRAWTVGWCVELLQAFFLVADDIMDSSL-TRR 134 (374)
T ss_dssp HHHHHHHHHHSSSSC--CHHHHHHHHHHHHHSCGG--GCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-EET
T ss_pred HHHHHHHHhhcCCCc--chHHHHHHHHHHHhCCCC--ccch----HHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CCC
Confidence 467778888877777 999999999999988641 0000 1124678899999999999999999999999 999
Q ss_pred CCCCchhhhcChH-HHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCC
Q psy11203 190 EPVVLNDMTFGNK-IALLSGDYLLSNSCSELAAL-----RNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKT 263 (438)
Q Consensus 190 G~~pt~~~~fGn~-~AVLaGD~Lla~A~~~La~l-----~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~ 263 (438)
|+ ||+|.+||+. +||++||||++.||..+++. .+.++++++++++..+++||++|+.+..+....
T Consensus 135 G~-pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d-------- 205 (374)
T 2qis_A 135 GQ-ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVD-------- 205 (374)
T ss_dssp TE-ECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC--------
T ss_pred CC-ccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc--------
Confidence 99 9999999999 99999999999999999975 346899999999999999999999875431100
Q ss_pred CCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy11203 264 SPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAG-QDAELQEQGYQFGKHLALAWQACLDLEPFT 341 (438)
Q Consensus 264 ~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag-~~~~~~~~l~~fG~~LGiAFQi~DDllD~~ 341 (438)
....++++|+.++++|||+| |+.||++|++++| ++++..+.+++||.+||+||||+||++|++
T Consensus 206 ---------------~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 206 ---------------LVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp ---------------GGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00148999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred CCC----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q psy11203 342 SNY----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKV 415 (438)
Q Consensus 342 ~d~----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~ 415 (438)
+++ |.|.|+ ||.|+|++++++..+. +.++.|.+.....+++++++++++++++|+.++++..+++|.++|++.
T Consensus 271 gd~~~~GK~g~Dl~~gK~T~p~l~al~~a~~-~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~ 349 (374)
T 2qis_A 271 GDPSVTGKIGTDIQDNKCSWLVVQCLQRATP-EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 349 (374)
T ss_dssp SCHHHHCSCCCTTTTTCCCHHHHHHHHHCCH-HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCchhHHHcCCccHHHHHHHHhCCH-HHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 983 467774 9999999999997432 344455444433457899999999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHhh
Q psy11203 416 LQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 416 L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+.||++++|+.|..+++++.+
T Consensus 350 L~~lp~~~~k~~L~~l~~~i~~ 371 (374)
T 2qis_A 350 IEQYAAPLPPAVFLGLARKIYK 371 (374)
T ss_dssp HHHHCTTSCHHHHHHHHHHHC-
T ss_pred HHhCCCchHHHHHHHHHHHHHc
Confidence 9999999999999999999864
No 22
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1e-56 Score=448.63 Aligned_cols=278 Identities=17% Similarity=0.175 Sum_probs=230.9
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHH
Q psy11203 76 IVGYPTSFLSLRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEED 151 (438)
Q Consensus 76 ~v~~p~s~~~l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~ 151 (438)
+.+++.+...+...++++++.|+..|.+.+.+. +|.+.++..|.. .||| |+||+||+++++++|+.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~g~~-------- 92 (324)
T 3uca_A 23 MMKKRKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGK--RIRPILMLLSYYIYKSD-------- 92 (324)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHTTCSC--------
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC--------
Confidence 344455555566678899999999999999875 778888877765 5666 99999999999999876
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC--c---
Q psy11203 152 KAAGVLHSQRALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR--N--- 224 (438)
Q Consensus 152 ~~~~i~~~~~~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~--~--- 224 (438)
.+...++|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++.+ +
T Consensus 93 -----~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~ 165 (324)
T 3uca_A 93 -----YKKILTPAMAIEMIHTYSLIHDDLPCMDNDD-LRRGK-PTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKS 165 (324)
T ss_dssp -----GGGGHHHHHHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHCCchhccCCC-CCCCC-ccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 146788999999999999999999 99999 99999 9999999999999999999999999999864 1
Q ss_pred -HHHHHHHHHHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHH
Q psy11203 225 -QHLVELMSGAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGK 301 (438)
Q Consensus 225 -~~v~~~~s~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~ 301 (438)
.++++.+++++ ..|++||++|+.+..+. +.++++|++++++|||+||+.
T Consensus 166 ~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~----------------------------~~t~~~y~~i~~~KTa~L~~~ 217 (324)
T 3uca_A 166 ALKATKIIADAAGSDGMIGGQIVDIINEDKE----------------------------EISLKELDYMHLKKTGELIKA 217 (324)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTSSCS----------------------------SCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHcCCCC----------------------------CCCHHHHHHHHhcchHHHHHH
Confidence 46788888876 68999999999886432 247899999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHH
Q psy11203 302 SCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEIN 374 (438)
Q Consensus 302 sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~ 374 (438)
||++|++++|++++.++.+++||++||+||||+||++|+++++ +.|.| +||.|+|++++
T Consensus 218 a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a-------------- 283 (324)
T 3uca_A 218 SIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG-------------- 283 (324)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHC--------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH--------------
Confidence 9999999999999999999999999999999999999999984 34666 49999999984
Q ss_pred cCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 375 KGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 375 ~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++.+++|.++|++.|+.||++ ++.|..+++++.+
T Consensus 284 -----------------------l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~i~~ 321 (324)
T 3uca_A 284 -----------------------LEECKKKCVNITEECIEILSSIKGN--TEPLKVLTMKLLE 321 (324)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHh
Confidence 4577899999999999999999975 3789999999874
No 23
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.2e-56 Score=445.10 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQR 161 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~ 161 (438)
+...+++++..|+..|.+.+.+. +|.+.++.+|+. .||| |+||+||+++++++|+. .+.+.
T Consensus 3 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGK--rlRp~l~l~~~~~~g~~-------------~~~~~ 67 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGK--RLRPFLVYATGHMFGVS-------------TNTLD 67 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTCC-------------HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC-------------HHHHH
Confidence 45678889999999999999874 678888877765 5666 99999999999999875 25678
Q ss_pred HHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc--------CcHHHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL--------RNQHLVELM 231 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l--------~~~~v~~~~ 231 (438)
.+|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++. ...++++.+
T Consensus 68 ~~A~avEliH~asLiHDDiP~~D~s~-~RRG~-pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 145 (299)
T 1rqj_A 68 APAAAVECIHAYSLIHDDLPAMDDDD-LRRGL-PTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISEL 145 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCC-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhCCChhhcCCC-CCCCC-CChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Confidence 9999999999999999999 99999 99999 999999999999999999999999999985 123678888
Q ss_pred HHHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy11203 232 SGAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKL 309 (438)
Q Consensus 232 s~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gail 309 (438)
++++ .+|++||++|+.+..+ ..++++|++++++|||+||+.+|++|+++
T Consensus 146 ~~~~g~~~~~~GQ~~dl~~~~~-----------------------------~~~~~~y~~i~~~KTa~L~~~~~~~ga~l 196 (299)
T 1rqj_A 146 ASASGIAGMCGGQALDLDAEGK-----------------------------HVPLDALERIHRHKTGALIRAAVRLGALS 196 (299)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTT-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHhhhhHHHHhHHHHHhccCC-----------------------------CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8887 7999999999987543 14789999999999999999999999999
Q ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCC
Q psy11203 310 -AGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVT 381 (438)
Q Consensus 310 -ag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~ 381 (438)
+|++++..+.+++||.+||+||||+||++|+++++ +.|.|+ ||.|+|+++++
T Consensus 197 ~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l-------------------- 256 (299)
T 1rqj_A 197 AGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGL-------------------- 256 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH--------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH--------------------
Confidence 99999999999999999999999999999999983 457774 99999999964
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHhh
Q psy11203 382 NIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKE-SDARTALSNIIVAMGS 437 (438)
Q Consensus 382 ~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~-s~ar~~L~~l~~~v~~ 437 (438)
+++++.+++|.++|++.|+.||+ ++.++.|.+|++++.+
T Consensus 257 -----------------~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~ 296 (299)
T 1rqj_A 257 -----------------EQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ 296 (299)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 45678999999999999999987 4478899999999864
No 24
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=2.9e-56 Score=445.32 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQR 161 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~ 161 (438)
+...+.+....|+..|.+.+.+. ++.+.++..|+. .||| |+||+||+++++++|+. .+.+.
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGK--rlRP~L~l~~~~~~g~~-------------~~~~~ 73 (324)
T 3ts7_A 9 LSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGK--RMRPLLTYATGQTIGVA-------------ADLLD 73 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCC--CHHHHHHHHHHHHHTCC-------------GGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC-------------HHHHH
Confidence 44567888999999999999864 578888877765 5555 99999999999999876 14678
Q ss_pred HHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC--c------HHHHHHH
Q psy11203 162 ALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR--N------QHLVELM 231 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~--~------~~v~~~~ 231 (438)
++|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++.. + .++++.+
T Consensus 74 ~~A~avEliH~aSLIHDDip~mD~~~-~RRG~-pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~l 151 (324)
T 3ts7_A 74 GPACAVEFIHVYSLIHDDLPAMDDDD-LRRGK-PTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETL 151 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcccccCCC-ccCCC-CchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 8999999999999999999 99999 99999 9999999999999999999999999999874 2 2578888
Q ss_pred HHHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy11203 232 SGAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKL 309 (438)
Q Consensus 232 s~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gail 309 (438)
++++ .+|++||++|+.+..+ ..++++|++++++|||+||+.||++|+++
T Consensus 152 a~a~g~~~m~~GQ~lDl~~~~~-----------------------------~~t~~~y~~i~~~KTg~L~~~a~~~Ga~l 202 (324)
T 3ts7_A 152 AKASGPAGMVGGQAIDLASVGK-----------------------------KLDLPGLENMHIRKTGALIRASVRLACLA 202 (324)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTC-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHhHHHHHHccCC-----------------------------CCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8885 7899999999987643 14789999999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCC
Q psy11203 310 AG-QDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVT 381 (438)
Q Consensus 310 ag-~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~ 381 (438)
+| ++++.++.+++||++||+||||+||++|+++++ +.|.| +||.|+|+++
T Consensus 203 ag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------- 260 (324)
T 3ts7_A 203 RPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------- 260 (324)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHH----------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH----------------------
Confidence 99 999999999999999999999999999999984 34666 4999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 382 NIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 382 ~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+++|++.+++|.++|++.|+.||++ ++.|..+++++.+
T Consensus 261 ---------------gle~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~~~~ 299 (324)
T 3ts7_A 261 ---------------GLSGAKEKAEEMHEAALESLAGFGPE--ADLLRELARFIIQ 299 (324)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTTTCCGG--GHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHh
Confidence 35788899999999999999999986 6799999999874
No 25
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=4.2e-56 Score=441.28 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
+...+......|+..|.+.+.+. +|.+.++..|+...||| |+||+||+++++++|.. .+.+.+
T Consensus 3 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~-------------~~~~~~ 68 (304)
T 3lsn_A 3 LTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGK-RVRPLLAYAACEALGGK-------------PEQANG 68 (304)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHTTCC-------------GGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCC-------------HHHHHH
Confidence 45567888999999999999875 46788888877644444 99999999999999876 146788
Q ss_pred HHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC----c----HHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR----N----QHLVELMS 232 (438)
Q Consensus 163 lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~----~----~~v~~~~s 232 (438)
+|+++||||+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.. + .++++.++
T Consensus 69 ~A~aiEliH~asLIHDDip~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 146 (304)
T 3lsn_A 69 AACAVELIHAYSLVHDDLPAMDDDD-LRRGQ-PTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLA 146 (304)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccCCC-ccCCC-CchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHH
Confidence 999999999999999999 99999 99999 9999999999999999999999999999875 2 25788888
Q ss_pred HHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q psy11203 233 GAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLA 310 (438)
Q Consensus 233 ~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gaila 310 (438)
+++ .+|++||++|+.+..+. .++++|++++++|||+||+.||++|++++
T Consensus 147 ~a~~~~~~~~GQ~lDl~~~~~~-----------------------------~s~~~y~~i~~~KTg~L~~~~~~~ga~la 197 (304)
T 3lsn_A 147 QAAGPAGMVGGQAIDLGSVGLK-----------------------------LDQQALEYMHRHKTGALIEASVILGALAS 197 (304)
T ss_dssp HHHSTTTHHHHHHHHHHTTTCC-----------------------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHchhhHhHhHHHHHHccCCC-----------------------------CCHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 888 45999999999876431 47899999999999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCH
Q psy11203 311 GQ-DAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTN 382 (438)
Q Consensus 311 g~-~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~ 382 (438)
|+ +++.++.+++||.+||+||||+||++|+++++ +.|.| +||.|+|+++
T Consensus 198 g~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~----------------------- 254 (304)
T 3lsn_A 198 GRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL----------------------- 254 (304)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHH-----------------------
Confidence 99 89899999999999999999999999999973 45767 4999999998
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 383 IDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 383 ~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|++++++.+++|.++|++.|+.||+ .++.|..+++++.+
T Consensus 255 --------------~l~~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~~~~ 293 (304)
T 3lsn_A 255 --------------GLAAAKEYALELRDQALHALRPFDA--AAEPLRELARYIVE 293 (304)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTTTSCG--GGHHHHHHHHHHHC
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHH
Confidence 4567889999999999999999996 47899999999874
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.9e-56 Score=443.74 Aligned_cols=263 Identities=17% Similarity=0.155 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHhCC--CCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHH
Q psy11203 93 EIANVALHLRKLVGS--NHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMI 170 (438)
Q Consensus 93 el~~v~~~l~~~l~s--~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElI 170 (438)
....|+..|.+.+.+ .++.+.++.+|+...||| |+||+||+++++++|+.. +...++|+++|||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~~-------------~~~~~~A~avEli 74 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGK-RIRPVLLLLTLDSLNTEY-------------ELGMKSAIALEMI 74 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCC-CHHHHHHHHHHHHTTSCG-------------GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHH
Confidence 445688888888876 567888888777644444 999999999999998751 3457799999999
Q ss_pred HHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc------CcHHHHHHHHHHH--HHHHH
Q psy11203 171 RTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL------RNQHLVELMSGAV--RDLTE 240 (438)
Q Consensus 171 HtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l------~~~~v~~~~s~~i--~~l~~ 240 (438)
|+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++. ...++++.+++++ .+|++
T Consensus 75 H~asLiHDDiP~~D~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~ 152 (301)
T 1rtr_A 75 HTYSLIHDDLPAMDNDD-YRRGK-LTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVG 152 (301)
T ss_dssp HHHHHHHHHSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHhCCchhccCCC-ccCCC-ccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999 99999 99999 999999999999999999999999999997 3457889999998 88999
Q ss_pred HHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy11203 241 SEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQG 320 (438)
Q Consensus 241 Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l 320 (438)
||++|+.+..+ ..++++|++++++|||+||+.||++|++++|++++.++.+
T Consensus 153 GQ~~Dl~~~~~-----------------------------~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l 203 (301)
T 1rtr_A 153 GQMLDMQSEGQ-----------------------------PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHL 203 (301)
T ss_dssp HHHHHHHTTTS-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHccCC-----------------------------CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999987533 1478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy11203 321 YQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVS 393 (438)
Q Consensus 321 ~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~ 393 (438)
++||.+||+||||+||++|+++++ +.|.| +||.|+|+++++
T Consensus 204 ~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al-------------------------------- 251 (301)
T 1rtr_A 204 ESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGK-------------------------------- 251 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHH--------------------------------
Confidence 999999999999999999999873 34666 499999999963
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 394 KGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 394 ~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++++.+++|.++|++.|+.||+++.++.|.++++++.+
T Consensus 252 -----~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~ 290 (301)
T 1rtr_A 252 -----DGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYS 290 (301)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 467899999999999999999988889999999999864
No 27
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=3.3e-57 Score=458.87 Aligned_cols=283 Identities=11% Similarity=0.014 Sum_probs=242.5
Q ss_pred chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCC
Q psy11203 110 PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYS 189 (438)
Q Consensus 110 p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RR 189 (438)
+++.++.+|...||| |+||+||+++++++|+.+. +..+.+..+|+++||||+||||||||||+|+ +||
T Consensus 58 ~~~~~~~~y~~~GGK--rlRp~l~l~~~~~~g~~~~---------~~~~~~~~~A~avEllH~asLIHDDImD~s~-~RR 125 (368)
T 2her_A 58 EYYLNCIDYNVKKGK--HIRGKILVLISSLSSAYSN---------IKRDSIYLLGWVVEAIQALILIADDIMDSGK-FRR 125 (368)
T ss_dssp HHHHHHHHHHTTSST--TTTTC-CHHHHTTTTCCCS---------SSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-EET
T ss_pred HHHHHHHHHhhCCCC--ccchHHHHHHHHHhCCCCc---------ccHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCC
Confidence 557788899887777 9999999999999876410 1136789999999999999999999999999 999
Q ss_pred CCCCchhhhcChHHHHHHHHHHH---HHHHHHHHcc-C---cHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCC
Q psy11203 190 EPVVLNDMTFGNKIALLSGDYLL---SNSCSELAAL-R---NQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTK 262 (438)
Q Consensus 190 G~~pt~~~~fGn~~AVLaGD~Ll---a~A~~~La~l-~---~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~ 262 (438)
|+ ||+|.+||+.+|||+||||+ ++++.++++. + ..++++++++++.++++||++|+.+..+...
T Consensus 126 G~-pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~-------- 196 (368)
T 2her_A 126 GA-PCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKA-------- 196 (368)
T ss_dssp TE-ECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSC--------
T ss_pred CC-ccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--------
Confidence 99 99999999999999999999 8999988874 3 2478999999999999999999987532100
Q ss_pred CCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHhhhcc
Q psy11203 263 TSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAGQDAEL--QEQGYQFGKHLALAWQACLDLEP 339 (438)
Q Consensus 263 ~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag~~~~~--~~~l~~fG~~LGiAFQi~DDllD 339 (438)
.+.+ ++|++++++|||+| |+.||++|++++|++++. .+.+++||.+||+||||+||++|
T Consensus 197 -----------------~~~~-~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 258 (368)
T 2her_A 197 -----------------DKIS-ERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp -----------------SSHH-HHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CChH-HHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123 89999999999999 999999999999999887 89999999999999999999999
Q ss_pred ccCCCCCCCC--CCCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHh
Q psy11203 340 FTSNYAPGTI--FNLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVL 416 (438)
Q Consensus 340 ~~~d~~~g~d--~gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L 416 (438)
++...|.|.| +||.|+|++++++. +| +.++.|.+..... + ++++++++++|+++++++++++|.++|++.|
T Consensus 259 ~~~~GK~g~Dl~egK~T~pvi~al~~a~~--~~r~~L~~~~~~~---~-~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L 332 (368)
T 2her_A 259 YLFNDSNADDICRFKLTWPLQKSFEIADE--EMKLKISENYGKN---S-SLVKDCYNLLKINEHYLEYQRNALDYLIKLV 332 (368)
T ss_dssp HHSCCSSSCTTTTTCCCHHHHSSTTTCCH--HHHHHHHHHTTTC---H-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCChHhCCcccHHHHHHHHhCCH--HHHHHHHHHhCCc---H-HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 9833346777 49999999999997 45 4555555544321 2 8999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHhh
Q psy11203 417 QVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 417 ~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+.+|++++|+.|..+++++-+
T Consensus 333 ~~lp~~~~k~~L~~l~~~i~~ 353 (368)
T 2her_A 333 KDITDDSLQKVFIHLIHQISE 353 (368)
T ss_dssp TTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 28
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.9e-55 Score=447.64 Aligned_cols=292 Identities=13% Similarity=0.032 Sum_probs=249.5
Q ss_pred hHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCC
Q psy11203 111 LLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSE 190 (438)
Q Consensus 111 ~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG 190 (438)
.+.++.+|...||| |+||+||+++++++|+.. + .+.+ ..+.+..+|+++||||+||||||||||+|+ +|||
T Consensus 58 ~l~~~~~y~~~gGK--rlRp~l~l~~~~~~~~~~-~-~~~~----~~~~~~~~A~aiEliH~asLiHDDImD~s~-~RRG 128 (367)
T 1uby_A 58 RLKEVLQYNAPGGK--CNRGLTVVAAYRELSGPG-Q-KDAE----SLRCALAVGWCIELFQAASLVADDIMDQSL-TRRG 128 (367)
T ss_dssp HHHHHHHHHSSSSC--CHHHHHHHHHHHHHCCGG-G-CSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-EETT
T ss_pred HHHHHHhhhcCCCc--chhHHHHHHHHHHhCCCc-c-CChh----hHHHHHHHHHHHHHHHHHHHHhCcccCCCC-CCCC
Confidence 56778888887777 999999999999987620 0 0001 124678999999999999999999999999 9999
Q ss_pred CCCchhhhcChH-HHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCC
Q psy11203 191 PVVLNDMTFGNK-IALLSGDYLLSNSCSELAAL-----RNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTS 264 (438)
Q Consensus 191 ~~pt~~~~fGn~-~AVLaGD~Lla~A~~~La~l-----~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~ 264 (438)
+ ||+|.+||++ ++|+.|||++++||.++++. .+.++++++++++..+++||++|+.+..+....
T Consensus 129 ~-pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d--------- 198 (367)
T 1uby_A 129 Q-LCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVD--------- 198 (367)
T ss_dssp E-ECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCC---------
T ss_pred C-CChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------
Confidence 9 9999999999 89999999999999999986 346899999999999999999999875421100
Q ss_pred CCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy11203 265 PDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAG-QDAELQEQGYQFGKHLALAWQACLDLEPFTS 342 (438)
Q Consensus 265 ~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag-~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~ 342 (438)
....++++|+.++++|||+| |+.||++|++++| ++++..+.+++||.+||+||||+||++|+++
T Consensus 199 --------------~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 199 --------------LSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp --------------CTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------cccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00258999999999999999 9999999999999 8999999999999999999999999999999
Q ss_pred CC----CCCCC--CCCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q psy11203 343 NY----APGTI--FNLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKV 415 (438)
Q Consensus 343 d~----~~g~d--~gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~ 415 (438)
++ |.|.| +||.|+|++++++. +| +.++.|.+.....++.++++++++++++|+.+.++.++++|.++|++.
T Consensus 265 d~~~~GK~g~Dl~egK~T~p~l~al~~~~~--~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~ 342 (367)
T 1uby_A 265 DPALTGAVGTDIQDNKCSWLVVQCLQRVTP--EQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQEL 342 (367)
T ss_dssp CTTCSSCCCCCSSSCCCCHHHHHHHHHCCH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCchhhHHcCCchHHHHHHHHhCCH--HHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 85 35667 49999999999997 44 444555544433457899999999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHhh
Q psy11203 416 LQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 416 L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+.||++++|+.|..+++++.+
T Consensus 343 L~~lp~~~~k~~L~~l~~~i~~ 364 (367)
T 1uby_A 343 IEKHSNRLPKEIFLGLAQKIYK 364 (367)
T ss_dssp HHHHCSSSCTHHHHHHHHHHCC
T ss_pred HHhCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=5.5e-56 Score=439.85 Aligned_cols=265 Identities=21% Similarity=0.212 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHhCC--CCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHH
Q psy11203 91 SDEIANVALHLRKLVGS--NHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVT 167 (438)
Q Consensus 91 ~~el~~v~~~l~~~l~s--~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~av 167 (438)
+..+..|+..|.+.+.+ .+|.+.++..|+. .||| |+||+||+++++++|+.. .+...++|+++
T Consensus 15 ~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~g~~~------------~~~~~~~A~av 80 (302)
T 3p8l_A 15 QQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGK--RLRPLLVLTTVAAFQKEM------------ETQDYQVAASL 80 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHTTCCC------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCCc------------cHHHHHHHHHH
Confidence 46677888888888764 4678888877766 5555 999999999999998762 13778999999
Q ss_pred HHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHHHH--HHH
Q psy11203 168 EMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-----QHLVELMSGAV--RDL 238 (438)
Q Consensus 168 ElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-----~~v~~~~s~~i--~~l 238 (438)
||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++... .++++.+++++ .+|
T Consensus 81 EliH~asLIHDDIP~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~ 158 (302)
T 3p8l_A 81 EMIHTYSLIHDDLPAMDDDD-LRRGK-PTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGM 158 (302)
T ss_dssp HHHHHHHHHHHHSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHCCchhccCCC-ccCCC-cchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999 99999 99999 99999999999999999999999999998642 26788888887 789
Q ss_pred HHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH
Q psy11203 239 TESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQE 318 (438)
Q Consensus 239 ~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~ 318 (438)
++||++|+.+..+ ..++++|++++++|||+||+.||++|++++|++++.++
T Consensus 159 ~~GQ~lDl~~~~~-----------------------------~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~ 209 (302)
T 3p8l_A 159 VSGQMGDIEGEKV-----------------------------SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIG 209 (302)
T ss_dssp HHHHHHHHHTTTS-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHccCC-----------------------------CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999987532 14789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11203 319 QGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNI 391 (438)
Q Consensus 319 ~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~ 391 (438)
.+++||++||+||||+||++|+++++ +.|.| +||.|+|++++
T Consensus 210 ~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~------------------------------- 258 (302)
T 3p8l_A 210 LLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLG------------------------------- 258 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHH-------------------------------
Confidence 99999999999999999999999984 34666 49999999994
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHHhhccCC---chHHHHHHHHHHHHhh
Q psy11203 392 VSKGPGMRLTKQLQKQHSQQAMKVLQVFKE---SDARTALSNIIVAMGS 437 (438)
Q Consensus 392 v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~---s~ar~~L~~l~~~v~~ 437 (438)
++++++.+++|.++|++.|+.||+ ++.++.|.++++++.+
T Consensus 259 ------l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~ 301 (302)
T 3p8l_A 259 ------IAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQL 301 (302)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhh
Confidence 466788999999999999999986 7778899999999864
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=9.7e-56 Score=452.83 Aligned_cols=296 Identities=11% Similarity=0.054 Sum_probs=238.4
Q ss_pred chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCC
Q psy11203 110 PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYS 189 (438)
Q Consensus 110 p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RR 189 (438)
+.+.++.+|...||| |+||+||+++++++|+...++ ...+.+..+|+++||||+||||||||||+|+ +||
T Consensus 66 ~~~~~~~~Y~~~GGK--rlRp~Lvl~~~~~~g~~~~~~-------~~~~~a~~lA~aiEliH~asLIHDDImD~s~-~RR 135 (395)
T 2ihi_A 66 KYYKLLFDYNCLGGK--NNRGILVILIYEYVKNRDINS-------SEWEKAACLAWCIEILQAAFLVADDIMDKGE-MRR 135 (395)
T ss_dssp HHHHHHHHHHHSSSC--CHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-EET
T ss_pred HHHHHHHHhhccCcc--cHHHHHHHHHHHHhCCCCCCh-------hHHHHHHHHHHHHHHHHHHHHHHhccccCCC-CCC
Confidence 356678889887777 999999999999998642111 1135788999999999999999999999999 999
Q ss_pred CCCCchhhhcChHH--HHHHHHHHHHHHHHHHHcc-C----cHHHHHHHHHHHHHHHHHHHhhhh-c------------c
Q psy11203 190 EPVVLNDMTFGNKI--ALLSGDYLLSNSCSELAAL-R----NQHLVELMSGAVRDLTESEFLGRR-D------------L 249 (438)
Q Consensus 190 G~~pt~~~~fGn~~--AVLaGD~Lla~A~~~La~l-~----~~~v~~~~s~~i~~l~~Ge~lql~-~------------~ 249 (438)
|+ ||+|..||+.+ ||+.||||++.|+.++++. . ..++++++++++..+++||++|+. + .
T Consensus 136 G~-pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~ 214 (395)
T 2ihi_A 136 NK-YCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDV 214 (395)
T ss_dssp TE-ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCT
T ss_pred CC-CCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccccccc
Confidence 99 99999999998 9999999999999999875 2 258999999999999999999993 1 0
Q ss_pred cCCCCC-CcccCCCCCCCCchhhhhhccCCC-CCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHH
Q psy11203 250 QNNPLP-PQFLTTKTSPDDSNQIMESLDELP-MTPALADWTTRNVLSAGSL-LGKSCKGTLKLAGQDAEL--QEQGYQFG 324 (438)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~-~~~t~e~yl~~i~~KTasL-~~~sc~~gailag~~~~~--~~~l~~fG 324 (438)
.+...+ .. ..+ ...++++|+.++++|||+| |..+|++|++++|++++. .+.+++||
T Consensus 215 ~~~~~~~e~-------------------~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g 275 (395)
T 2ihi_A 215 NNINVPEQP-------------------VIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDIS 275 (395)
T ss_dssp TCCCCC-CC-------------------CCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHH
T ss_pred ccccccccc-------------------cccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 010000 00 000 0258999999999999999 999999999999999887 89999999
Q ss_pred HHHHHHHHHHhhhccccCCC----CCCCC--CCCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCCh
Q psy11203 325 KHLALAWQACLDLEPFTSNY----APGTI--FNLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPG 397 (438)
Q Consensus 325 ~~LGiAFQi~DDllD~~~d~----~~g~d--~gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ 397 (438)
.+||+||||+||++|+++++ |.|.| +||.|+|++++++. +| +.++.|.+.....+++++++++++++++|+
T Consensus 276 ~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~--~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~ 353 (395)
T 2ihi_A 276 MLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSE--PDKIKIVKNYGKNNLACVKVIDSLYEQYKI 353 (395)
T ss_dssp HHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCH--HHHHHHHHHCC-CCHHHHHHHHHC----CH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCH--HHHHHHHHHhCCCCHHHHHHHHHHHHHCCh
Confidence 99999999999999999984 35666 49999999999997 45 444445444333467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 398 MRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 398 ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++++++|.++|++.|+.||++++|+.|..+++++.+
T Consensus 354 ~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~ 393 (395)
T 2ihi_A 354 RKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFT 393 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998754
No 31
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1e-55 Score=438.36 Aligned_cols=264 Identities=17% Similarity=0.165 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHH
Q psy11203 89 LLSDEIANVALHLRKLVGSN---HPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALA 164 (438)
Q Consensus 89 ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA 164 (438)
.+...+..|+..|.+.+.+. +|.+.++..|+. .||| |+||+||+++++++|+. .+....+|
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~g~~-------------~~~~~~~A 76 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGK--RARPYLVYITGQMLGCE-------------LSDLDTPA 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCS--CHHHHHHHHHHHTTTCC-------------GGGTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC-------------HHHHHHHH
Confidence 45688899999999999764 578888877765 5555 99999999999999876 14678899
Q ss_pred HHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC--c------HHHHHHHHHH
Q psy11203 165 EVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR--N------QHLVELMSGA 234 (438)
Q Consensus 165 ~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~--~------~~v~~~~s~~ 234 (438)
+++||||+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.. + .++++.++++
T Consensus 77 ~aiEliH~asLIHDDIp~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a 154 (302)
T 3p8r_A 77 SAVECIHAYSLIHDDLPAMDDDE-LRRGK-PTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEA 154 (302)
T ss_dssp HHHHHHHHHHHHHHTCHHHHCCC----------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccCCC-cCCCC-cchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 99999 99999 9999999999999999999999999999874 2 2578888888
Q ss_pred H--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcC-
Q psy11203 235 V--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG- 311 (438)
Q Consensus 235 i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag- 311 (438)
+ .+|++||++|+.+... ..++++|++++++|||+||+.||++|++++|
T Consensus 155 ~g~~~~~~GQ~lDl~~~~~-----------------------------~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~ 205 (302)
T 3p8r_A 155 SGAQGMCLGQALDLAAENR-----------------------------LISLEELETIHRNKTGALMRCAIRLGALAAGE 205 (302)
T ss_dssp HSTTTHHHHHHHHHHTTTS-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTH
T ss_pred HhHhHHHHhHHHHHHccCC-----------------------------CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCC
Confidence 6 6999999999987531 1478999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHH
Q psy11203 312 QDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNID 384 (438)
Q Consensus 312 ~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d 384 (438)
++++.++.+++||++||+||||+||++|+++++ +.|.| +||.|+|++++
T Consensus 206 ~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~------------------------ 261 (302)
T 3p8r_A 206 KGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLG------------------------ 261 (302)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHH------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHH------------------------
Confidence 888889999999999999999999999999984 34666 49999999984
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 385 YKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 385 ~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++.+++|.++|++.|+.||++ ++.|..+++++.+
T Consensus 262 -------------l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~l~~~~~~ 299 (302)
T 3p8r_A 262 -------------LEGAQQKAHTLLQEALLALEAIPYN--TEHLEEFARYVVE 299 (302)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHTTCSSC--THHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHh
Confidence 5678899999999999999999986 6799999999874
No 32
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.6e-55 Score=449.96 Aligned_cols=330 Identities=10% Similarity=0.034 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSNH------PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHS 159 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~~------p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~ 159 (438)
+...+.+..+.+..++.+..-... |++..+.+|...||| |+||+||+++++++|+.+... ...+.
T Consensus 36 f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGK--RlRP~l~l~~~~~~~~~~~~~-------~~~~~ 106 (395)
T 3mav_A 36 FRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGK--NNRGILVILIYEYVKNRDINS-------SEWEK 106 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSC--CHHHHHHHHHHHHHHC-CCCH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCch--hhhHHHHHHHHHHhCCCCCCc-------ccHHH
Confidence 334455566666666665432221 234456677777777 999999999999987652111 11367
Q ss_pred HHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHH--HHHHHHHHcc-----CcHHHHHHHH
Q psy11203 160 QRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLL--SNSCSELAAL-----RNQHLVELMS 232 (438)
Q Consensus 160 ~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Ll--a~A~~~La~l-----~~~~v~~~~s 232 (438)
...+|+++||||+||||||||||+|+ +|||+ ||+|.+||+++||++||+|+ +.++.++... ...+++++++
T Consensus 107 ~~~~A~aiEliH~asLiHDDImD~s~-~RRG~-pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~ 184 (395)
T 3mav_A 107 AACLAWCIEILQAAFLVADDIMDKGE-MRRNK-YCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFR 184 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-EETTE-ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCC-CCCCc-hhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 88999999999999999999999999 99999 99999999999999999876 5567777653 1357899999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCccc----CCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHH
Q psy11203 233 GAVRDLTESEFLGRRDLQNNPLPPQFL----TTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTL 307 (438)
Q Consensus 233 ~~i~~l~~Ge~lql~~~~~~~~~~~~~----~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~ga 307 (438)
+++..+|+||++|+.+..+...+.... ..........+ ....++++|++++++|||+| |..+|++|+
T Consensus 185 ~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga 256 (395)
T 3mav_A 185 DATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVID--------INMINFGVYKNIVIHKTAYYSFFLPIVCGM 256 (395)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCC--------GGGCSHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccc--------cccCCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999997542110000000 00000000000 01258999999999999999 999999999
Q ss_pred HhcCCC--HHHHHHHHHHHHHHHHHHHHHhhhccccCCC----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCC
Q psy11203 308 KLAGQD--AELQEQGYQFGKHLALAWQACLDLEPFTSNY----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTES 379 (438)
Q Consensus 308 ilag~~--~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~ 379 (438)
+++|.+ +...+.+++||.+||+||||+||+||+++++ |+|.| +||.|+|+++|++.... +.++.|.+....
T Consensus 257 ~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~-~~r~~L~~~~~~ 335 (395)
T 3mav_A 257 LLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSE-PDKIKIVKNYGK 335 (395)
T ss_dssp HHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCH-HHHHHHHHHTTC
T ss_pred HhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCH-HHHHHHHHHhCC
Confidence 999975 3467899999999999999999999999985 45777 49999999999997321 333444443333
Q ss_pred CCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy11203 380 VTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAM 435 (438)
Q Consensus 380 ~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v 435 (438)
.+..+++.++++++++|+.+++++.+++|.++|.+.|+.+|++..+..|..+++.+
T Consensus 336 ~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~l~~ll~~lle~i 391 (395)
T 3mav_A 336 NNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEIL 391 (395)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999988888888887765
No 33
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=1.8e-55 Score=450.65 Aligned_cols=306 Identities=10% Similarity=-0.010 Sum_probs=243.3
Q ss_pred hHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhh-cchHHHHHHHH----HHHHHHHHHhhhhCccCCCC
Q psy11203 111 LLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAA-GVLHSQRALAE----VTEMIRTSHLVHKGIVNITP 185 (438)
Q Consensus 111 ~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~-~i~~~~~~lA~----avElIHtAsLIHDDIiD~s~ 185 (438)
.+.++.+|...||| |+||+||+++++++|+.. +.......+ ...+...++|+ ++||||+||||||||||+|+
T Consensus 57 ~l~~~m~Y~~~GGK--r~Rp~l~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~ 133 (390)
T 3dyh_A 57 YLRKMMDTTCLGGK--YNRGLTVIDVAESLLSLS-PNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSV 133 (390)
T ss_dssp HHHHHHHHHHSSSC--CHHHHHHHHHHHHTSCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcc--chhHHHHHHHHHHhCCcc-ccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCC
Confidence 46677888776666 999999999999987510 000000000 00134556666 79999999999999999999
Q ss_pred CCCCCCCCchhhhcChHHHHHHHHHHHHHH--HHHHHcc-Cc----HHHHHHHHHHHHHHHHHHHhhhhcccCC--CCCC
Q psy11203 186 GLYSEPVVLNDMTFGNKIALLSGDYLLSNS--CSELAAL-RN----QHLVELMSGAVRDLTESEFLGRRDLQNN--PLPP 256 (438)
Q Consensus 186 ~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A--~~~La~l-~~----~~v~~~~s~~i~~l~~Ge~lql~~~~~~--~~~~ 256 (438)
+|||+ ||+|..||+.+||++||+++.++ +.++++. .+ .++++++++++..+++||++|+.+.... ..|.
T Consensus 134 -~RRG~-Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~ 211 (390)
T 3dyh_A 134 -TRRGK-PCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPD 211 (390)
T ss_dssp -EETTE-ECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTT
T ss_pred -CcCCC-ccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999 99999999999999999999755 6788774 22 3789999999999999999999863110 0000
Q ss_pred cccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHH
Q psy11203 257 QFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAGQDAEL-QEQGYQFGKHLALAWQAC 334 (438)
Q Consensus 257 ~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag~~~~~-~~~l~~fG~~LGiAFQi~ 334 (438)
..... ... ....++++|+.++++|||+| |+.||++|++++|++++. .+.+++||.+||+||||+
T Consensus 212 ~~~~~---~~~-----------~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~ 277 (390)
T 3dyh_A 212 VSQPT---TTD-----------FAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQ 277 (390)
T ss_dssp SCCCC---CSS-----------CTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccc---ccc-----------cCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 01358999999999999999 999999999999998875 789999999999999999
Q ss_pred hhhccccCCC----CCCCC--CCCChHHHHHHhcc-CccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy11203 335 LDLEPFTSNY----APGTI--FNLTSAPVMFHLEQ-EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQ 407 (438)
Q Consensus 335 DDllD~~~d~----~~g~d--~gk~TlPvl~al~~-~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~ 407 (438)
||+||+++++ |.|.| +||.|+|++++++. +| +.++.|.+.....+++++++++++++++|+++++++++++
T Consensus 278 DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~~~--~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~ 355 (390)
T 3dyh_A 278 DDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASS--AQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAA 355 (390)
T ss_dssp HHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCCH--HHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhCCH--HHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 9999999983 46777 49999999999997 55 5555666555446789999999999999999999999999
Q ss_pred HHHHHHHHhhccCCchH--HHHHHHHHHHHhh
Q psy11203 408 HSQQAMKVLQVFKESDA--RTALSNIIVAMGS 437 (438)
Q Consensus 408 ~~~kA~~~L~~lp~s~a--r~~L~~l~~~v~~ 437 (438)
|.++|++.|+.||++++ |+.|..|++++.+
T Consensus 356 ~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~ 387 (390)
T 3dyh_A 356 VAEQVKELIEKLRLCSPGFAASVETLWGKTYK 387 (390)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHc
Confidence 99999999999999884 8999999998754
No 34
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=2.9e-55 Score=433.94 Aligned_cols=266 Identities=16% Similarity=0.120 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALA 164 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA 164 (438)
+...+......|+..|.+.+... ++.+.++..|+..||| |+||+||+++++++|.. .+.+..+|
T Consensus 3 ~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~~~gGK--rlRp~L~l~~~~~~g~~-------------~~~~~~~A 67 (297)
T 3m0g_A 3 LSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAAQGGK--RLRAFLAIESAAIHGIS-------------MAQAMPAA 67 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHSCSC--CHHHHHHHHHHHHTTCC-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhCCC-------------HHHHHHHH
Confidence 44567888889999999999865 6788888888865666 99999999999999876 25788999
Q ss_pred HHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc------HHHHHHHHHHH-
Q psy11203 165 EVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN------QHLVELMSGAV- 235 (438)
Q Consensus 165 ~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~------~~v~~~~s~~i- 235 (438)
+++||||+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++... .++++.+++++
T Consensus 68 ~avEliH~asLIHDDip~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g 145 (297)
T 3m0g_A 68 LAVEALHAYSLVHDDMPCMDNDD-LRRGL-PTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASG 145 (297)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCccccCCCC-ccCCC-CCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999 99999 99999999999999999999999999998752 36889999998
Q ss_pred -HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH
Q psy11203 236 -RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDA 314 (438)
Q Consensus 236 -~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~ 314 (438)
..|+.||++|+.+..+.. ..++++|++++++|||+||+.||++|++++|+++
T Consensus 146 ~~~~~~GQ~lDl~~~~~~~---------------------------~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~ 198 (297)
T 3m0g_A 146 AEGMVYGQALDIAAETAAV---------------------------PLTLDEIIRLQAGKTGALISFAAQAGAILAGADR 198 (297)
T ss_dssp TTTHHHHHHHHHHHTTSSS---------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC
T ss_pred HhHHHHhHHHHHHhhhcCC---------------------------CCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCH
Confidence 889999999998863221 2488999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHH
Q psy11203 315 ELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKK 387 (438)
Q Consensus 315 ~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~ 387 (438)
+ .+++||.+||+||||+||++|+++++ +.|.| +||.|+|+++++
T Consensus 199 ~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l-------------------------- 249 (297)
T 3m0g_A 199 G---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGL-------------------------- 249 (297)
T ss_dssp H---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCS--------------------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHH--------------------------
Confidence 6 89999999999999999999999984 34666 499999999954
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 388 VYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 388 i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+++++.++++.++|.+.|+.||++. +.|..+++++.+
T Consensus 250 -----------~~a~~~~~~~~~~A~~~L~~~~~~~--~~L~~l~~~~~~ 286 (297)
T 3m0g_A 250 -----------AGAKSRAADLVAEAEAALAPYGEAA--STLRACARYVIE 286 (297)
T ss_dssp -----------SHHHHHHHHHHHHHHHHTGGGGGGG--HHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 4567889999999999999999875 689999999864
No 35
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-55 Score=429.27 Aligned_cols=259 Identities=16% Similarity=0.175 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhCC-CCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHH
Q psy11203 94 IANVALHLRKLVGS-NHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIR 171 (438)
Q Consensus 94 l~~v~~~l~~~l~s-~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIH 171 (438)
.++|+..|.+.+.. .+|.+.++.+|+. .||| |+||+||+++++++|++ .+.+..+|+++||||
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~g~~-------------~~~~~~~A~avEliH 79 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVGGX--RIRPLLVLTLGEDLGVE-------------EEXLLDVAVAVELFH 79 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCC--CHHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCcC-------------HHHHHHHHHHHHHHH
Confidence 45677777787743 3567888877765 5555 99999999999999875 146788999999999
Q ss_pred HHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11203 172 TSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDL 249 (438)
Q Consensus 172 tAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~ 249 (438)
+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.++.++++.+++++.+|++||++|+.+.
T Consensus 80 ~asLIHDDIP~~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~ 157 (284)
T 2ftz_A 80 TASLIHDDLPPIDNAD-FRRGX-PSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFE 157 (284)
T ss_dssp HHHHHHHHSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCchhcCCCC-CCCCC-ccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhc
Confidence 999999999 99999 99999 999999999999999999999999999998777999999999999999999999876
Q ss_pred cCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy11203 250 QNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLAL 329 (438)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGi 329 (438)
.+.. ..++++|++++++|||+||+.+|++|++++|++++ .+++||.++|+
T Consensus 158 ~~~~---------------------------~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~ 207 (284)
T 2ftz_A 158 RRXM---------------------------EVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGV 207 (284)
T ss_dssp HSCC---------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHH
T ss_pred cCcC---------------------------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHH
Confidence 4420 14889999999999999999999999999998876 99999999999
Q ss_pred HHHHHhhhccccCCC-----CCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q psy11203 330 AWQACLDLEPFTSNY-----APGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQL 404 (438)
Q Consensus 330 AFQi~DDllD~~~d~-----~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~ 404 (438)
||||+||++|+++++ +.|.|+.|.|+|++++ +++++++
T Consensus 208 aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~~-------------------------------------l~~a~~~ 250 (284)
T 2ftz_A 208 AFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXVG-------------------------------------IQXAREM 250 (284)
T ss_dssp HHHHHHHHHHHHHHCCCC-----------CHHHHHC-------------------------------------HHHHHHH
T ss_pred HHHHHHhhhhhcCCHHhhCCCcchhccccchHHHHH-------------------------------------HHHHHHH
Confidence 999999999999874 3467766999999995 4567899
Q ss_pred HHHHHHHHHHHhhccCCchHHHH-HHHHHHHHhh
Q psy11203 405 QKQHSQQAMKVLQVFKESDARTA-LSNIIVAMGS 437 (438)
Q Consensus 405 ~~~~~~kA~~~L~~lp~s~ar~~-L~~l~~~v~~ 437 (438)
+++|.++|++.|+.||+ +.++. |.++++++.+
T Consensus 251 a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~~~~ 283 (284)
T 2ftz_A 251 ADXYYEEVLXGIESEGL-FRTLFLLXELXQMVEE 283 (284)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHc
Confidence 99999999999999998 78888 9999999874
No 36
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=9.1e-55 Score=433.10 Aligned_cols=268 Identities=15% Similarity=0.171 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN---HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~---~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
+...+.+....|+..|.+.+... +|.+.++..|....||| |+||+||+++++++|+. .+...+
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~-------------~~~~~~ 74 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGK-RIRPILVYLAGDLIDVD-------------QGVLDI 74 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSC-CHHHHHHHHHHHHTTCC-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCC-------------HHHHHH
Confidence 55577888889999999999763 67888888877644444 99999999999999876 267889
Q ss_pred HHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC-c-------HHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR-N-------QHLVELMS 232 (438)
Q Consensus 163 lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~-~-------~~v~~~~s 232 (438)
+|+++||||+|||||||| ||+++ +|||+ ||+|.+||+++|||+||||+++||+.+++.. + .++++.++
T Consensus 75 ~A~aiEliH~aSLIHDDip~mD~~~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la 152 (313)
T 3lom_A 75 IAAALELTHCYSLIHDDLPAMDNDD-LRRGK-PSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLV 152 (313)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCS-EETTE-ECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCC-ccCCC-CCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 999999999999999999 99999 99999 9999999999999999999999999999862 1 24778888
Q ss_pred HHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q psy11203 233 GAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLA 310 (438)
Q Consensus 233 ~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gaila 310 (438)
+++ ..|++||++|+.+..+. ..++++|++++++|||+||+.||++ |+++
T Consensus 153 ~a~g~~~m~~GQ~lDl~~~~~~----------------------------~~t~~~y~~i~~~KTg~L~~~a~~~-a~la 203 (313)
T 3lom_A 153 NASGISGMVSGQSLDLSELAKS----------------------------SVTEEQLREIHLLKTGKLILACFEM-VLAA 203 (313)
T ss_dssp HHHSTTTHHHHHHHHHHTTTSS----------------------------CCCHHHHHHHHHHHTHHHHHHHHHH-HHTT
T ss_pred HHHhHhHHHHhHHHHHHccCCC----------------------------CCCHHHHHHHHHcCcHHHHHHHHHH-HHHh
Confidence 886 69999999999876432 2488999999999999999999999 9999
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCC
Q psy11203 311 G--QDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVT 381 (438)
Q Consensus 311 g--~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~ 381 (438)
| ++++.++.+++||.+||+||||+||++|+++++ +.|.| +||.|+|++++
T Consensus 204 g~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~--------------------- 262 (313)
T 3lom_A 204 QHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFN--------------------- 262 (313)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSC---------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHH---------------------
Confidence 9 899999999999999999999999999999984 34666 49999999983
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 382 NIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 382 ~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
++++++.+++|.++|++.|+.||++ ++.|..+++++.+
T Consensus 263 ----------------l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~~~~ 300 (313)
T 3lom_A 263 ----------------KQQLEEEIAVHYQIAMDSLRLFGSK--AAALIELTKQLQN 300 (313)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTTTTGGG--GHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHh
Confidence 5678899999999999999999975 6799999999864
No 37
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=8.7e-55 Score=429.20 Aligned_cols=266 Identities=13% Similarity=0.118 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHH
Q psy11203 84 LSLRWLLSDEIANVALHLRKLVGS-NHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRA 162 (438)
Q Consensus 84 ~~l~~ll~~el~~v~~~l~~~l~s-~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~ 162 (438)
+++...+..-...|+..|.+.+.. ..|.+.++..|+..||| |+||+|++++++++|++. +.+.+
T Consensus 9 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~gGK--rlRp~L~l~~~~~~g~~~-------------~~~~~ 73 (289)
T 2azj_A 9 MSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILKDGK--RFRGTLNMFFTVALGGDI-------------KDSYG 73 (289)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHSCCC--CHHHHHHHHHHHHTTCCG-------------GGGHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCH-------------HHHHH
Confidence 455666777777888888888864 46778888888777555 999999999999998751 35688
Q ss_pred HHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHH
Q psy11203 163 LAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSEL-AALRNQHLVELMSGAVRDLTES 241 (438)
Q Consensus 163 lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~L-a~l~~~~v~~~~s~~i~~l~~G 241 (438)
+|+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+ ++.+ +++++.+++++.+|++|
T Consensus 74 ~A~avEliH~asLIHDDi~D~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~G 150 (289)
T 2azj_A 74 GALAIEILHSASLALCDIVDLDA-TRRGD-KAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVG 150 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-BSSSS-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC-CCCCC-ccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999 999999999999999999999999999 9886 48999999999999999
Q ss_pred HHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy11203 242 EFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGY 321 (438)
Q Consensus 242 e~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~ 321 (438)
|++|+.. +++|++++++|||+||+.||++|++++ ++++.++.++
T Consensus 151 Q~~dl~~-----------------------------------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~ 194 (289)
T 2azj_A 151 ALRDMYD-----------------------------------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQML 194 (289)
T ss_dssp HHHTTTT-----------------------------------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHH
T ss_pred HHHHHhh-----------------------------------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9999864 147899999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHH
Q psy11203 322 QFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLT 401 (438)
Q Consensus 322 ~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a 401 (438)
+||.+||+||||+||++|++++.++....||.|+|++| +..+ . +.+
T Consensus 195 ~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~--~~~g----------------~----------------~~a 240 (289)
T 2azj_A 195 DVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY--REGK----------------L----------------EEY 240 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH--TTTC----------------H----------------HHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHH--HcCC----------------H----------------HHH
Confidence 99999999999999999999986655567999999999 2211 0 111
Q ss_pred -HHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHhh
Q psy11203 402 -KQLQKQHSQQAMKVLQVFKE-SDARTALSNIIVAMGS 437 (438)
Q Consensus 402 -~~~~~~~~~kA~~~L~~lp~-s~ar~~L~~l~~~v~~ 437 (438)
+.++++|.++|++.|+.||+ +++++.|.++++++.+
T Consensus 241 ~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~ 278 (289)
T 2azj_A 241 VRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLAN 278 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 45899999999999999998 8899999999999864
No 38
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.3e-54 Score=430.90 Aligned_cols=270 Identities=18% Similarity=0.156 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHH-
Q psy11203 85 SLRWLLSDEIANVALHLRKLVGSN--HPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQ- 160 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~s~--~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~- 160 (438)
++...+.+.+..|+..|.+.+... +|.+.++..|.. .||| |+||+||+++++++|+.. +..
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~g~~~-------------~~~~ 71 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGK--RLRPLLTVATMQSLGVTF-------------VPER 71 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHTTCCC-------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCH-------------HHHh
Confidence 355578888999999999988754 678888887766 5555 999999999999998762 344
Q ss_pred -HHHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHH
Q psy11203 161 -RALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-----QHLVELMS 232 (438)
Q Consensus 161 -~~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-----~~v~~~~s 232 (438)
.++|+++||||+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.+. .++++.++
T Consensus 72 ~~~~A~aiEliH~aSLIHDDiP~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~ 149 (309)
T 3pde_A 72 HWRPVMALELLHTYSLIHDDLPAMDNDA-LRRGE-PTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALA 149 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHCCchhccCCC-CCCCC-cchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 88999999999999999999 99999 99999 99999999999999999999999999998653 26788898
Q ss_pred HHH--HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q psy11203 233 GAV--RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLA 310 (438)
Q Consensus 233 ~~i--~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gaila 310 (438)
+++ ..|+.||++|+.+..+ ..++++|+.++++|||+||+.||++|++++
T Consensus 150 ~a~g~~~m~~GQ~lDl~~~~~-----------------------------~~t~~~y~~i~~~KTg~L~~~a~~~ga~la 200 (309)
T 3pde_A 150 TAAGPSGMVAGQAKDIQSEHV-----------------------------NLPLSQLRVLHKEKTGALLHYAVQAGLILG 200 (309)
T ss_dssp HHHSTTTHHHHHHHHHHTTTC-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHhhHhHHHHhHHHHHHccCC-----------------------------CCCHHHHHHHHHhccHHHHHHHHHHHHHHc
Confidence 887 7899999999987532 147899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHH
Q psy11203 311 GQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNI 383 (438)
Q Consensus 311 g~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~ 383 (438)
|++++.++.+++||.+||+||||+||++|+++++ +.|.| +||.|+|+++++
T Consensus 201 ga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------- 258 (309)
T 3pde_A 201 QAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------- 258 (309)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCH----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHH----------------------
Confidence 9999999999999999999999999999999984 34666 499999999965
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 384 DYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 384 d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
+.+++.++++.++|.+.|+.+|.+-..+.|..+++++.+
T Consensus 259 ---------------~~a~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l~~~~~~ 297 (309)
T 3pde_A 259 ---------------IGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDT 297 (309)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHGGGGGSCT
T ss_pred ---------------HHhHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Confidence 445677888999999999997764322238888888753
No 39
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=7.5e-54 Score=423.76 Aligned_cols=263 Identities=18% Similarity=0.192 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHH
Q psy11203 88 WLLSDEIANVALHLRKLVGSNH-PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEV 166 (438)
Q Consensus 88 ~ll~~el~~v~~~l~~~l~s~~-p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~a 166 (438)
..+.+++..|+..|.+.+.+.. +.+.++.+|....||| |+||+||+++++++|+. .+...++|++
T Consensus 15 ~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGK-rlRp~L~l~~~~~~g~~-------------~~~~~~~A~a 80 (293)
T 2j1p_A 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGK-RVRPVLCIAACELVGGE-------------ESLAMPAACA 80 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCC-CHHHHHHHHHHHHTTCC-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCC-------------HHHHHHHHHH
Confidence 3667888999999999998765 4588887776644444 99999999999998865 1567889999
Q ss_pred HHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC-----cHHHH---HHHHHHH-
Q psy11203 167 TEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR-----NQHLV---ELMSGAV- 235 (438)
Q Consensus 167 vElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~-----~~~v~---~~~s~~i- 235 (438)
+||||+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.. +..++ ..+++++
T Consensus 81 vEliH~asLiHDDip~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g 158 (293)
T 2j1p_A 81 VEMIHTMSLIHDDLPCMDNDD-LRRGK-PTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIG 158 (293)
T ss_dssp HHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCchhccCCC-CCCCC-CchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHh
Confidence 99999999999998 99999 99999 9999999999999999999999999999864 23344 4555554
Q ss_pred -HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH
Q psy11203 236 -RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDA 314 (438)
Q Consensus 236 -~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~ 314 (438)
.+|++||++|+.+..+.. .+.++++|+.++++|||+||+.||++|++++|+++
T Consensus 159 ~~~~~~GQ~~Dl~~~~~~~--------------------------~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~ 212 (293)
T 2j1p_A 159 TEGLVAGQVVDISSEGLDL--------------------------NNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSD 212 (293)
T ss_dssp TTTHHHHHHHTTC---CCH--------------------------HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHHccCCC--------------------------CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCH
Confidence 579999999998753210 01478999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHc
Q psy11203 315 ELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSK 394 (438)
Q Consensus 315 ~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~ 394 (438)
+..+.+++||.+||+||||+||++|+++++ |.|+|+++
T Consensus 213 ~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-------K~T~p~l~----------------------------------- 250 (293)
T 2j1p_A 213 EEIERLRKFARCIGLLFQVVDDILDVTKSS-------KLTYPKLM----------------------------------- 250 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCc-------cccHHHHH-----------------------------------
Confidence 999999999999999999999999999875 89999988
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203 395 GPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS 437 (438)
Q Consensus 395 sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~ 437 (438)
|+++|++.+++|.++|++.|+.|| ++.++.|.++++++.+
T Consensus 251 --gle~a~~~a~~~~~~A~~~L~~l~-~~~~~~L~~l~~~~~~ 290 (293)
T 2j1p_A 251 --GLEKSREFAEKLNTEARDQLLGFD-SDKVAPLLALANYIAN 290 (293)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTSC-TTTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence 567889999999999999999998 4468899999999864
No 40
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=2.7e-53 Score=422.14 Aligned_cols=275 Identities=17% Similarity=0.145 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHH
Q psy11203 85 SLRWLLSDEIANVALHLRKLVG---SNHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQ 160 (438)
Q Consensus 85 ~l~~ll~~el~~v~~~l~~~l~---s~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~ 160 (438)
++...+...-. |+..|.+.+. +.+|.+.++..|.. .||| |+||+||+++++++|+.. .. .+..+..
T Consensus 7 ~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGK--rlRp~Lvl~~~~~~g~~~--~~-----~~~~~~~ 76 (311)
T 3llw_A 7 NLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGK--RFRPKLFLAVLCALVGQK--DY-----SNQQTEY 76 (311)
T ss_dssp HHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCC--CHHHHHHHHHHHHHSCHH--HH-----HHSHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCC--chHHHHHHHHHHHhCCCc--cc-----ccchHHH
Confidence 34445555555 9999999885 35678999887766 5556 999999999999998751 00 1123678
Q ss_pred HHHHHHHHHHHHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHc--cCcH---HHHHHHHH
Q psy11203 161 RALAEVTEMIRTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAA--LRNQ---HLVELMSG 233 (438)
Q Consensus 161 ~~lA~avElIHtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~--l~~~---~v~~~~s~ 233 (438)
..+|+++||||+|||||||| ||+|+ +|||+ ||+|.+||+.+|||+||||+++||+.+++ +++. ++++.+++
T Consensus 77 ~~~A~aiEliH~aSLIHDDIp~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~ 154 (311)
T 3llw_A 77 FKIALSIECLHTYSLIHDDLPCMDNAA-LRRNH-PTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSA 154 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTCCS-EETTE-ECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCccccCCCc-ccCCC-CchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 89999999999999999999 99999 99999 99999999999999999999999999998 4432 57888888
Q ss_pred H--HHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q psy11203 234 A--VRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG 311 (438)
Q Consensus 234 ~--i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag 311 (438)
+ +..|+.||++|+.+... ..++++|+.++++|||+||+.||++|++++|
T Consensus 155 a~g~~~m~~GQ~lDl~~~~~-----------------------------~~t~~~y~~i~~~KTg~L~~~a~~lga~lag 205 (311)
T 3llw_A 155 NGGIKGMILGQALDCYFENT-----------------------------PLNLEQLTFLHEHKTAKLISASLIMGLVASG 205 (311)
T ss_dssp HHSTTTHHHHHHHHHHTTTS-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHhcCC-----------------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 8 57999999999987521 1478999999999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHH
Q psy11203 312 QDAELQ-EQGYQFGKHLALAWQACLDLEPFTSNY-----APGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDY 385 (438)
Q Consensus 312 ~~~~~~-~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~ 385 (438)
++++.+ +.+++||.+||+||||+||++|+++++ +.|.++||.|+|+++++
T Consensus 206 a~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l------------------------ 261 (311)
T 3llw_A 206 IKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGL------------------------ 261 (311)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCH------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHH------------------------
Confidence 998888 999999999999999999999999984 23446799999999965
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCC-chH-HHHHHHHHHHHhh
Q psy11203 386 KKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKE-SDA-RTALSNIIVAMGS 437 (438)
Q Consensus 386 ~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~-s~a-r~~L~~l~~~v~~ 437 (438)
+.++..++++.++|.+.|+.|+. +.. .+.|.++++++.+
T Consensus 262 -------------~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~ 302 (311)
T 3llw_A 262 -------------ERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFK 302 (311)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHh
Confidence 45567788999999999999653 222 4689999999864
No 41
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=5.2e-53 Score=416.54 Aligned_cols=259 Identities=17% Similarity=0.185 Sum_probs=214.6
Q ss_pred HHHHHHHHHHhC---CCCchHHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHH
Q psy11203 95 ANVALHLRKLVG---SNHPLLKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMI 170 (438)
Q Consensus 95 ~~v~~~l~~~l~---s~~p~l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElI 170 (438)
+.|+..|.+.+. +.+|.+.++..|+. .||| |+||+||+++++++|+.. .+...++|+++|||
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGK--rlRp~L~l~~~~~~~~~~------------~~~~~~~A~aiEli 72 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGK--HFRAQLLLSVVQSNKPEL------------LNQALDVALALEFI 72 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCc--chHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHH
Confidence 456667777664 45788999877765 6666 999999999999988641 25788999999999
Q ss_pred HHHHhhhhCc--cCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC-c----HHHHHHHHHH--HHHHHHH
Q psy11203 171 RTSHLVHKGI--VNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR-N----QHLVELMSGA--VRDLTES 241 (438)
Q Consensus 171 HtAsLIHDDI--iD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~-~----~~v~~~~s~~--i~~l~~G 241 (438)
|+|||||||| ||+|+ +|||+ ||+|.+||+++|||+||||+++||+.+++.. + .++++.++++ +..|+.|
T Consensus 73 H~aSLIHDDIp~mD~s~-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~G 150 (291)
T 3npk_A 73 HTYSLIHDDLPAMDNAD-FRRGI-PTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIG 150 (291)
T ss_dssp HHHHHHHHTSTTTTCCS-EETTE-ECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHCCcccccCCC-CCCCC-CchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999 99999 99999 9999999999999999999999999999864 2 3578889998 8999999
Q ss_pred HHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy11203 242 EFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGY 321 (438)
Q Consensus 242 e~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~ 321 (438)
|++|+.+..+ ..++++|+.++++|||+||+.||++|++++|++++.++.++
T Consensus 151 Q~lDl~~~~~-----------------------------~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~ 201 (291)
T 3npk_A 151 QAIDCFFEDK-----------------------------RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIY 201 (291)
T ss_dssp HHHHHHTTTS-----------------------------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhccCC-----------------------------CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999987532 14789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCC-----CCCCCCCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCC
Q psy11203 322 QFGKHLALAWQACLDLEPFTSNY-----APGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGP 396 (438)
Q Consensus 322 ~fG~~LGiAFQi~DDllD~~~d~-----~~g~d~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg 396 (438)
+||++||+||||+||++|+++++ +.|.|+||.|+|++++++
T Consensus 202 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~---------------------------------- 247 (291)
T 3npk_A 202 KLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLE---------------------------------- 247 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHH----------------------------------
Confidence 99999999999999999999984 347789999999999654
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHh
Q psy11203 397 GMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMG 436 (438)
Q Consensus 397 ~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~ 436 (438)
.+++.++++.++|.+.|+.|+.+ ..+.|++++.+-.
T Consensus 248 ---~a~~~~~~~~~~a~~~l~~~~~~-~~~~l~~la~~~~ 283 (291)
T 3npk_A 248 ---QAIKTKENLLNECEQDLEKLNEK-LAQMIQNLIIQYL 283 (291)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC
T ss_pred ---HhHHHHHHHHHHHHHHHHHhchh-HHHHHHHHHHHHH
Confidence 44567788899999999999753 2567999888754
No 42
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=9.7e-54 Score=435.33 Aligned_cols=282 Identities=12% Similarity=0.015 Sum_probs=234.8
Q ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCC
Q psy11203 112 LKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEP 191 (438)
Q Consensus 112 l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~ 191 (438)
+.++.+|...||| |+||+||+++++++|+... ...+....+|+++||||+||||||||||+|+ +|||+
T Consensus 60 ~~~~l~Y~~~GGK--rlRp~l~~~~~~~~~~~~~---------~~~e~~~~la~aiEliH~asLiHDDimD~s~-~RRG~ 127 (368)
T 2q58_A 60 YLNCIDYNVKKGK--HIRGKILVLISSLSSAYSN---------IKRDSIYLLGWVVEAIQALILIADDIMDSGK-FRRGA 127 (368)
T ss_dssp HHHHHHHHTTCST--TTTTC-CHHHHTTTTCCCS---------SSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-EETTE
T ss_pred HHHHHhcCCCCcc--chhHHHHHHHHHHhCCCcc---------CCHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCCC
Confidence 4567888877777 9999999999999876420 0125678899999999999999999999999 99999
Q ss_pred CCchhhhcChHHHHHHHHHHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCC
Q psy11203 192 VVLNDMTFGNKIALLSGDYLLSNSCSELAALRN-------QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTS 264 (438)
Q Consensus 192 ~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~-------~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~ 264 (438)
||+|.+||+.+|||+||||++.|+.++.++.+ .++++++++++..+++||++|+.+.....
T Consensus 128 -pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~----------- 195 (368)
T 2q58_A 128 -PCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSK----------- 195 (368)
T ss_dssp -ECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSS-----------
T ss_pred -CccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc-----------
Confidence 99999999999999999999999999987653 36889999999999999999997643221
Q ss_pred CCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy11203 265 PDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCKGTLKLAG--QDAELQEQGYQFGKHLALAWQACLDLEPFT 341 (438)
Q Consensus 265 ~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~~gailag--~~~~~~~~l~~fG~~LGiAFQi~DDllD~~ 341 (438)
.+.+.++|++++.+|||.| |..||.+|++++| ++++..+.+++||.+||+||||+||++||+
T Consensus 196 ---------------~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 260 (368)
T 2q58_A 196 ---------------ADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp ---------------CSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1357899999999999998 7999999999998 566778899999999999999999999999
Q ss_pred CCCCCCCCC--CCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhcc
Q psy11203 342 SNYAPGTIF--NLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVF 419 (438)
Q Consensus 342 ~d~~~g~d~--gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~l 419 (438)
+.+|.|.|+ ||.|+|+++|++..+. +.++.|.+... .+... +.+++...+..+.+.+.++++.+++.+.++.+
T Consensus 261 ~gK~~g~Dl~egK~T~p~i~al~~~~~-~~r~~L~~~~~-~~~~~---vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l 335 (368)
T 2q58_A 261 FNDSNADDICRFKLTWPLQKSFEIADE-EMKLKISENYG-KNSSL---VKDCYNLLKINEHYLEYQRNALDYLIKLVKDI 335 (368)
T ss_dssp SCCCSSCTTTSCCCCHHHHSSTTTCCH-HHHHHHHHHTT-TCHHH---HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCchHhcCCcHHHHHHHHHhCCH-HHHHHHHHHhC-CCHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 998888884 9999999999998432 45555655443 23333 44555566677888888999999999999999
Q ss_pred CCchHHHHHHHHHHHHhh
Q psy11203 420 KESDARTALSNIIVAMGS 437 (438)
Q Consensus 420 p~s~ar~~L~~l~~~v~~ 437 (438)
|++..++.|..++..+.+
T Consensus 336 ~~~~~k~~l~~ll~kI~~ 353 (368)
T 2q58_A 336 TDDSLQKVFIHLIHQISE 353 (368)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 999888887777766653
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=7.4e-48 Score=377.60 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHH
Q psy11203 86 LRWLLSDEIANVALHLRKLVGSN-HPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALA 164 (438)
Q Consensus 86 l~~ll~~el~~v~~~l~~~l~s~-~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA 164 (438)
+...++++++.|+..|++.+.+. +|.+.++..|+...||| |+||+||+++++++|+.. ...+.+..+|
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGK-rlRp~Lvll~~~~~g~~~----------~~~~~~~~~A 74 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGK-LLRPLLLLTFTYSIDRRS----------IMDPRILEAA 74 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHCGGG----------GGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCC----------CChHHHHHHH
Confidence 34578999999999999999988 88999988776644444 999999999999998620 0126788999
Q ss_pred HHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHh
Q psy11203 165 EVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFL 244 (438)
Q Consensus 165 ~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~l 244 (438)
+++||||+||||||||||+|+ +|||+ ||+|.+||+++|||+||||+++|++.++++++ ++++.+++++.+|++||++
T Consensus 75 ~aiEliH~aSLIHDDImD~s~-~RRG~-Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~l 151 (285)
T 4fp4_A 75 AIVELLHVVSLLQDDVMDQHD-QRRGI-KTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQAL 151 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-BSSSS-BCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCC-CCCCC-CcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999 99999 99999999999999999999999999999875 9999999999999999999
Q ss_pred hhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy11203 245 GRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFG 324 (438)
Q Consensus 245 ql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG 324 (438)
|+.+.. .. ++++|||+||+.||++|++++|++ +.++.+++||
T Consensus 152 Dl~~~~----------------------------------~~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G 193 (285)
T 4fp4_A 152 DLEGER----------------------------------DK---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLG 193 (285)
T ss_dssp HHTTCH----------------------------------HH---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHH
T ss_pred HHhccc----------------------------------cc---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 997631 11 899999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhhhccccCCC
Q psy11203 325 KHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 325 ~~LGiAFQi~DDllD~~~d~ 344 (438)
++||+||||+||++|+++++
T Consensus 194 ~~lGlAFQI~DDiLD~~~d~ 213 (285)
T 4fp4_A 194 TKLGILYQYSDDYSDENVER 213 (285)
T ss_dssp HHHHHHTTCC---------C
T ss_pred HHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999875
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.8e-46 Score=367.39 Aligned_cols=201 Identities=14% Similarity=0.076 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHhCCCCch-HHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHH
Q psy11203 91 SDEIANVALHLRKLVGSNHPL-LKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTE 168 (438)
Q Consensus 91 ~~el~~v~~~l~~~l~s~~p~-l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avE 168 (438)
+..-..|+..|.+.+.+..|. +.++..|+. .||| |+||+||+++++++|++ .+...++|+++|
T Consensus 6 ~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGK--rlRP~L~l~~~~~~g~~-------------~~~~~~~A~aiE 70 (274)
T 3kra_B 6 AAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPA--TAASTLCLAACELVGGD-------------RSQAMAAAAAIH 70 (274)
T ss_dssp HHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHTTCC-------------GGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHH
Confidence 344556888999999888776 888776654 6666 99999999999999876 146688999999
Q ss_pred HHHHHHhhhhCcc-CCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcH-------HHHHH---HHHHH--
Q psy11203 169 MIRTSHLVHKGIV-NITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQ-------HLVEL---MSGAV-- 235 (438)
Q Consensus 169 lIHtAsLIHDDIi-D~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~-------~v~~~---~s~~i-- 235 (438)
|||+||||||||+ |+++ +|||+ ||+|.+||+++|||+||||+++||+.+++..++ .+++. +++++
T Consensus 71 liH~aSLIHDDI~~dD~d-~RRG~-pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~ 148 (274)
T 3kra_B 71 LVHAAAYVHEHLPLTDGS-RPVSK-PAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGP 148 (274)
T ss_dssp HHHHHHHHHHTCCCSSSS-SCCCS-SCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHcCCcccCCc-cCCCC-CCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhH
Confidence 9999999999998 7778 89999 999999999999999999999999999987653 34444 45555
Q ss_pred HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH
Q psy11203 236 RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAE 315 (438)
Q Consensus 236 ~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~ 315 (438)
.+|++||++|+.+..+. .++++|+.++++|||+||+.||++|++++|++++
T Consensus 149 ~~~~~GQ~lDl~~~~~~-----------------------------~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~ 199 (274)
T 3kra_B 149 EGMISGLHREEEIVDGN-----------------------------TSLDFIEYVCKKKYGEMHACGAACGAILGGAAEE 199 (274)
T ss_dssp TTHHHHHHHHTTCCTTS-----------------------------SCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhHHHHHhccCCC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 67999999999875431 4789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy11203 316 LQEQGYQFGKHLALAWQACLDL 337 (438)
Q Consensus 316 ~~~~l~~fG~~LGiAFQi~DDl 337 (438)
.++.+++||++||+||||+||.
T Consensus 200 ~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 200 EIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=1.8e-45 Score=360.30 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHH-cCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHH
Q psy11203 88 WLLSDEIANVALHLRKLVGSNHPL-LKTAKSLLY-NGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAE 165 (438)
Q Consensus 88 ~ll~~el~~v~~~l~~~l~s~~p~-l~~a~~~~~-~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~ 165 (438)
..+...-..|+..|.+.+....|. +.++..|+. .||| |+||+||+++++++|++ .+...++|+
T Consensus 8 ~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGK--rlRP~L~l~~~~~~g~~-------------~~~~~~~A~ 72 (273)
T 3qkc_B 8 TYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPR--TSASALCVAACELVGGD-------------RSDAMAAAA 72 (273)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCC--CHHHHHHHHHHHHTTCC-------------GGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhCCC-------------HHHHHHHHH
Confidence 344444556788999999877775 777766654 6666 99999999999999876 146788999
Q ss_pred HHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc------HHHHHHH---HHHH-
Q psy11203 166 VTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN------QHLVELM---SGAV- 235 (438)
Q Consensus 166 avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~------~~v~~~~---s~~i- 235 (438)
++||||+||||||||+|.++ |||+ ||+|.+||+++|||+||||+++||+.+++..+ .++++.+ ++++
T Consensus 73 aiEliH~aSLIHDDI~D~d~--RRG~-pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g 149 (273)
T 3qkc_B 73 AVHLMHVAAYTHENLPLTDG--PMSK-SEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMG 149 (273)
T ss_dssp HHHHHHHHHHHHHSCCBTTB--CSSS-SCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCcccCcc--CCCC-CCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999987 9999 99999999999999999999999999998764 2445544 4454
Q ss_pred -HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHH-HHHhHHHHHHHHHHHHHHHhcCCC
Q psy11203 236 -RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTT-RNVLSAGSLLGKSCKGTLKLAGQD 313 (438)
Q Consensus 236 -~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~-~i~~KTasL~~~sc~~gailag~~ 313 (438)
..|+.||++|+.+..+ .+ ++|++ ++++|||+||+.||++|++++|++
T Consensus 150 ~~~~~~GQ~lDl~~~~~------------------------------~~-~eyl~~I~~~KTa~L~~~a~~lGailaga~ 198 (273)
T 3qkc_B 150 SEGIVEGQYHELGLNQL------------------------------ND-LELIEYVCKKKEGTLHACGAACGAILGGCD 198 (273)
T ss_dssp TTTHHHHHHHHTTCCSS------------------------------CC-HHHHHHHHHHTHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHhcCCC------------------------------CC-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 6789999999976311 13 36665 559999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11203 314 AELQEQGYQFGKHLALAWQACLDLE 338 (438)
Q Consensus 314 ~~~~~~l~~fG~~LGiAFQi~DDll 338 (438)
++.++.+++||++||+||||+||+.
T Consensus 199 ~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 199 EDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.72 E-value=2 Score=41.52 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 283 ALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 283 t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
+++++...+++-.|....++|. +++..+++ ...+..++|+|||+.+=+.|+-.|- ..|.+-+|.=..-+
T Consensus 124 t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~----~~gR~YlP~~~l~~ 192 (294)
T 4hd1_A 124 TWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDL----ALGRIYVPRADLEQ 192 (294)
T ss_dssp SHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHH----HTTCBCSCHHHHHT
T ss_pred CHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhh----ccCceeCCHHHHHH
Confidence 6788877777666665555544 33334433 3457889999999999888886542 24566666533322
Q ss_pred cCccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy11203 363 QEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422 (438)
Q Consensus 363 ~~~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s 422 (438)
..-. ... +.+.. ....+..++ +.-...++.|+++|...+..+|..
T Consensus 193 ~gv~--~~d-l~~~~---~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 193 FGAT--LDD-IRARR---ATDGVRRCI---------ALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp TTCC--HHH-HHTTC---CCHHHHHHH---------HHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred cCCC--HHH-HhcCC---CCHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2110 011 22221 122333332 333567889999999999988854
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=91.48 E-value=0.97 Score=44.81 Aligned_cols=145 Identities=8% Similarity=-0.053 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHH
Q psy11203 227 LVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGT 306 (438)
Q Consensus 227 v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~g 306 (438)
..+++.+.+..|..|-.+++.. .. .++++|...+++-.|.....++.+-
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~----~~---------------------------~t~~~L~~Yc~~vAg~VG~l~~~l~ 160 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK----HV---------------------------TSEQEWDKYCHYVAGLVGIGLSRLF 160 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC----CC---------------------------CSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC----CC---------------------------CCHHHHHHHHHhCcHHHHHHHHHHh
Confidence 3445566677888887777742 11 3788888888888888777777766
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhccC-ccHHHHHHHHcCCCCCCHHHH
Q psy11203 307 LKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQE-KSDELLNEINKGTESVTNIDY 385 (438)
Q Consensus 307 ailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~~-~~~~l~~~l~~~~~~~~~~d~ 385 (438)
..-...++. .......+.++|.|||+.+=+.|+-.|- ..|.+-+|.=..-+.. ..+++ .+. .....+
T Consensus 161 ~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv~eD~----~~gR~YlP~e~l~~~g~~~~dl----~~~---~~~~~~ 228 (343)
T 3vj8_A 161 SASEFEDPL-VGEDTERANSMGLFLQKTNIIRDYLEDQ----QGGREFWPQEVWSRYVKKLGDF----AKP---ENIDLA 228 (343)
T ss_dssp HHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTHHHHH----HTTCCCSCHHHHTTTCSSGGGG----GSG---GGHHHH
T ss_pred CCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHhHHHH----hCCCeeCCHHHHHHcCCCHHHH----hcc---cCCHHH
Confidence 543322332 3456678999999999999888885542 1245555542211110 00010 000 011222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch
Q psy11203 386 KKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423 (438)
Q Consensus 386 ~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ 423 (438)
..+ +..-...++.|+++|...+..+|+..
T Consensus 229 ~~~---------l~~l~~~A~~~~~~a~~~~~~L~~~~ 257 (343)
T 3vj8_A 229 VQC---------LNELITNALHHIPDVITYLSRLRNQS 257 (343)
T ss_dssp HHH---------HHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 222 24446788999999999999998853
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.68 E-value=3.3 Score=39.74 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 283 ALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 283 t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
|++++...+++-.|.....++.+- +..+. +.....+.++|.|+|+.+=+.|+-.|- ..|.+-+|.=..-+
T Consensus 128 t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv~eD~----~~gR~YLP~d~l~~ 197 (293)
T 3acx_A 128 TDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDVGEDF----ENERIYFSKQRLKQ 197 (293)
T ss_dssp SHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCHHHHH----HTTCCCSCHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcEEeCHHHHHH
Confidence 778888888887777766666543 22231 235678999999999999888885442 23566666522222
Q ss_pred cC-ccHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy11203 363 QE-KSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422 (438)
Q Consensus 363 ~~-~~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s 422 (438)
.. ..+++ .... .+ ..+..+ +.+-...++.|+.+|...+..+|..
T Consensus 198 ~gv~~e~l---~~~~---~~-~~~~~~---------~~~l~~~A~~~~~~a~~~~~~lp~~ 242 (293)
T 3acx_A 198 YEVDIAEV---YQNG---VN-NHYIDL---------WEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp HTCCHHHH---HHHC---CC-HHHHHH---------HHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred cCCCHHHh---cccC---CC-HHHHHH---------HHHHHHHHHHHHHHHHHhHHhCCHH
Confidence 11 11111 1111 11 223332 2344578899999999999999874
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=87.68 E-value=0.66 Score=39.83 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11203 204 ALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLG 245 (438)
Q Consensus 204 AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lq 245 (438)
.||+|||+=++.+.+|++.+....+..+|+++..+.+.-..-
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl 113 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIR 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999988876543
No 50
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=85.36 E-value=11 Score=38.36 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHh
Q psy11203 214 NSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVL 293 (438)
Q Consensus 214 ~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~ 293 (438)
.....+.+...+...+.+.+.+.+++.+-+.+..+..+... .++++|+.+ +.
T Consensus 243 d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~v---------------------------PsleEYl~~-R~ 294 (433)
T 3v1v_A 243 SAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHV---------------------------PEVWEYLAM-RQ 294 (433)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------------CCHHHHHHH-HH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHHH-HH
Confidence 34444444456677888889999999999988887543322 489999986 44
Q ss_pred HHHHHHHHHHHHHHHhcC--CCHHHHH--HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHh
Q psy11203 294 SAGSLLGKSCKGTLKLAG--QDAELQE--QGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHL 361 (438)
Q Consensus 294 KTasL~~~sc~~gailag--~~~~~~~--~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al 361 (438)
.||...-.++ .....| ..+++.+ .+.++-+..+...-+.||+..|..+...|.+ ..++..+|..
T Consensus 295 ~sg~~p~~~l--~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~--~~N~V~~~mk 362 (433)
T 3v1v_A 295 FNNFRPCPTI--TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNSPGR--HLNLPVVIAE 362 (433)
T ss_dssp HSSSTTTGGG--HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSC--CCCHHHHHHH
T ss_pred HHhHHHHHHH--HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhcCCC--CCcHHHHHHH
Confidence 5543211111 112223 2344333 4556778888888999999999876543211 2255555543
No 51
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=84.38 E-value=22 Score=35.28 Aligned_cols=106 Identities=6% Similarity=-0.070 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHH-HH
Q psy11203 224 NQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLG-KS 302 (438)
Q Consensus 224 ~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~-~s 302 (438)
.+.....+.+.+.+++.+-+.+..+..+... +++++|+.+-..-.|.-+- ..
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~v---------------------------Ps~eEYl~~r~~s~g~~~~~~l 227 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIV---------------------------PGVEEYLELRRLTFAHWIWTDL 227 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------------CCHHHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHhhhcCHHHHHHH
Confidence 4677888999999999999998877543322 4899999886555554322 22
Q ss_pred HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHH
Q psy11203 303 CKGTLKLAGQDAELQE--QGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFH 360 (438)
Q Consensus 303 c~~gailag~~~~~~~--~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~a 360 (438)
+..+.- -..+++..+ ...++-+..+...-+.||+..|..+...| + ..++..+|.
T Consensus 228 ~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G-~--~~N~V~~~m 283 (382)
T 3kb9_A 228 LEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGD-E--VHNLGISLI 283 (382)
T ss_dssp HHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C--CCSHHHHHH
T ss_pred HHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--cccHHHHHH
Confidence 222211 123344332 45566788888999999999997654333 1 234454444
No 52
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=58.44 E-value=1.2e+02 Score=28.22 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q psy11203 282 PALADWTTRNVLSAGSLLGK-SCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPG 347 (438)
Q Consensus 282 ~t~e~yl~~i~~KTasL~~~-sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g 347 (438)
+++++|+..-..-.|..+-. .+..+. =-..+++..+...++-+..+...-+.||+..|..+...|
T Consensus 152 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g 217 (300)
T 1di1_A 152 HELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEAS 217 (300)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC-
T ss_pred CCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 58999999776666654322 222222 122456677778888899999999999999998775444
No 53
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=54.14 E-value=2.1e+02 Score=29.89 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHH-HHHH
Q psy11203 225 QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLL-GKSC 303 (438)
Q Consensus 225 ~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~-~~sc 303 (438)
..++..+.++..+++.|-+.+..+..+... +|+++|+..-.--.|.-+ ...+
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyv---------------------------PT~EEYl~na~vSsg~~~l~~~~ 417 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYK---------------------------PSFEEFKANALPTCGYAMLAITS 417 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------CCHHHHHHHHGGGSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHhccceeehHHHHHHHH
Confidence 357888889999999999999888644322 489999987766555432 2222
Q ss_pred HHHHHhcC--CCHHHHHHH---HHHHHHHHHHHHHHhhhccccCCCC
Q psy11203 304 KGTLKLAG--QDAELQEQG---YQFGKHLALAWQACLDLEPFTSNYA 345 (438)
Q Consensus 304 ~~gailag--~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d~~ 345 (438)
..| .| .+++..+.+ -++-+..+...-+.||+..|..+.+
T Consensus 418 ~~~---mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~ 461 (554)
T 3g4d_A 418 FVG---MGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHR 461 (554)
T ss_dssp HHT---SCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHh---cCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhc
Confidence 222 23 455555554 3677888999999999999976543
No 54
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=54.01 E-value=1.5e+02 Score=28.09 Aligned_cols=115 Identities=7% Similarity=-0.083 Sum_probs=66.7
Q ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCc-cHHHHHHHHHhHH
Q psy11203 217 SELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTP-ALADWTTRNVLSA 295 (438)
Q Consensus 217 ~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-t~e~yl~~i~~KT 295 (438)
..+.+...+.....+.+.+.+++.+-..+..+..... .+ ++++|+.+-..-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~---------------------------~P~s~eEYl~~r~~s~ 177 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNA---------------------------PCDSAAQYLAMRRHTI 177 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------CHHHHHHHHHHHT
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------------------CCCCHHHHHHHccccc
Confidence 3344444567788889999999999988877653321 25 7899987655554
Q ss_pred HHHHH-HHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhc
Q psy11203 296 GSLLG-KSCKGTLKLAGQDAELQE--QGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLE 362 (438)
Q Consensus 296 asL~~-~sc~~gailag~~~~~~~--~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~ 362 (438)
|.-+- ..+..+.- -..+++..+ ...++-+..+...-+.||+..|..+...|. ..++..+|.-+
T Consensus 178 g~~~~~~~~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~---~~n~V~~~m~~ 243 (337)
T 1ps1_A 178 GVQPTVDLAERAGR-FEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGE---QNNMVMILRRE 243 (337)
T ss_dssp CHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC---CCSHHHHHHHH
T ss_pred chhhHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCC---cchHHHHHHHH
Confidence 44322 22222211 122343332 445677788888999999999976543231 34455455433
No 55
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=48.89 E-value=2.5e+02 Score=29.15 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHH
Q psy11203 225 QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSC 303 (438)
Q Consensus 225 ~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc 303 (438)
..++..+.++..+++.+-+.+..+...... +|+++|+..-..-.|.- +-...
T Consensus 354 ~~~~~~l~~~w~~l~~ayl~EAkW~~~g~v---------------------------Pt~eEYl~~~~vS~g~~~l~~~~ 406 (543)
T 2ong_A 354 VNVIPYLRQSWVDLADKYMVEARWFYGGHK---------------------------PSLEEYLENSWQSISGPCMLTHI 406 (543)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------CCHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------------------CCHHHHHhcccccchHHHHHHHH
Confidence 346777888899999999888877654322 48999997765554432 22222
Q ss_pred HHHHHhc-CCCHHHHHHH---HHHHHHHHHHHHHHhhhccccCCC
Q psy11203 304 KGTLKLA-GQDAELQEQG---YQFGKHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 304 ~~gaila-g~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d~ 344 (438)
..+. + ..+++..+.+ -++-+..++..-+.||+..|..+.
T Consensus 407 ~~~~--g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~ 449 (543)
T 2ong_A 407 FFRV--TDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEV 449 (543)
T ss_dssp HHHH--SSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHc--CCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhcc
Confidence 2221 2 2345444432 356677788888999999886543
No 56
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=46.85 E-value=1.9e+02 Score=27.92 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
....+...-+.|=.|+=|.|||.|- ++ .+.|+ +|.-..+|-.-|--.-.-+..+|...|..++.
T Consensus 232 ~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D-l~egK-~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 307 (324)
T 3uca_A 232 DIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKD-QESNK-NNYITIFGLEECKKKCVNITEECIEILSSIKG 307 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchH-hhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445667777888899999999772 35 57788 89999999888888888888999999998863
No 57
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=45.99 E-value=2.1e+02 Score=29.95 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHH-HHHHH
Q psy11203 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLL-GKSCK 304 (438)
Q Consensus 226 ~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~-~~sc~ 304 (438)
.++..+.++..+++.+-+.+..+..+... +|+++|+..-.--+|.-+ ...+.
T Consensus 364 ~~~~~l~~~w~~l~~ayl~EAkW~~~gyv---------------------------PT~EEYl~na~vSsg~~~l~~~~~ 416 (555)
T 3n0f_A 364 NILPYLTKAWADLCNAFLQEAKWLYNKST---------------------------PTFDDYFGNAWKSSSGPLQLIFAY 416 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------CCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCC---------------------------CCHHHHHHhcccchhHHHHHHHHH
Confidence 46777888899999999998888644322 489999988766555422 22222
Q ss_pred HHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhhhccccCCC
Q psy11203 305 GTLKLAG-QDAELQEQG---YQFGKHLALAWQACLDLEPFTSNY 344 (438)
Q Consensus 305 ~gailag-~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d~ 344 (438)
+++ +. .+++..+.+ -++-+..++..-+.||+..|..+.
T Consensus 417 ~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~ 458 (555)
T 3n0f_A 417 FAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEI 458 (555)
T ss_dssp HHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhh
Confidence 221 22 455555543 356678889999999999987553
No 58
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=40.56 E-value=87 Score=30.33 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
....+...-+.|=.|+=|.|||.|- ++ .+.|+ +|.-..+|-.-|--.-.-+..+|...|..++.
T Consensus 203 ~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D-l~egK-~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 203 QLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD-AEANK-ATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchH-HhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3455677778888899999999873 45 67788 89989999888888888888899988888863
No 59
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=39.08 E-value=85 Score=30.17 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccC------------CCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVN------------ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD------------~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
....+...-+.|=.|+=|.|||.| .++ .+.|+ +|.-..+|-..|--.-.-+..+|...|..++.
T Consensus 204 ~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~D-l~egK-~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 204 ELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGAD-IARDK-PTYPALLGLAAAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccH-HhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 344567777788889999999987 456 78899 99999999998888888889999999988864
No 60
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=38.77 E-value=3.6e+02 Score=28.13 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHH
Q psy11203 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCK 304 (438)
Q Consensus 226 ~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~ 304 (438)
.++..+.++..+++.+-+.+..+...... +|+++|+..-..-.|.- +-....
T Consensus 382 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~v---------------------------Pt~eEYl~~~~vSsg~~~l~~~~~ 434 (569)
T 2j5c_A 382 DSTPYLRKVWVGLIESYLIEAKWYYKGHK---------------------------PSLEEYMKNSWISIGGIPILSHLF 434 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------------CCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------------------CCHHHHHhcccccchHHHHHHHHH
Confidence 46777888889999998888777544322 48999997665544432 211111
Q ss_pred HHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhhhccccCCCC
Q psy11203 305 GTLKLAG-QDAELQEQG---YQFGKHLALAWQACLDLEPFTSNYA 345 (438)
Q Consensus 305 ~gailag-~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d~~ 345 (438)
.+ +++ .+++..+.+ -++-+..++..-+.||+..|..+.+
T Consensus 435 ~~--~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~ 477 (569)
T 2j5c_A 435 FR--LTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVE 477 (569)
T ss_dssp HH--SCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC------
T ss_pred HH--cCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcc
Confidence 11 122 344444432 3566777888889999999976654
No 61
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=37.03 E-value=2.1e+02 Score=29.90 Aligned_cols=90 Identities=7% Similarity=0.043 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHH-HHHH
Q psy11203 225 QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLL-GKSC 303 (438)
Q Consensus 225 ~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~-~~sc 303 (438)
..++..+.++..+++.|-+.+..+..+... +|+++|+..-.--.|.-+ ...+
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyv---------------------------PT~EEYl~na~vSsg~~~l~~~~ 413 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYT---------------------------PPVSEYLSNALATTTYYLLATTS 413 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------------CCHHHHHHHHTGGGSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHHhccccchHHHHHHHH
Confidence 357888889999999999998888543322 489999988766655432 2222
Q ss_pred HHHHHhcCCCHHHHHHH---HHHHHHHHHHHHHHhhhccccCC
Q psy11203 304 KGTLKLAGQDAELQEQG---YQFGKHLALAWQACLDLEPFTSN 343 (438)
Q Consensus 304 ~~gailag~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d 343 (438)
-+|. -..+++..+.+ -++-+..+...-+.||+..|..+
T Consensus 414 f~g~--~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 414 YLGM--KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHTC--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHcC--CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHH
Confidence 2221 12455555443 35667889999999999998654
No 62
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=35.31 E-value=1.4e+02 Score=28.61 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHcc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL 222 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l 222 (438)
....+...-+.|=.|+=|.||+.|- ++ .+.|+ +|.-..+|-..|--.-.-+...|...|..+
T Consensus 207 ~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~D-l~egK-~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 207 VIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRD-EALNK-STYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhH-HhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777888899999999773 34 56788 888888888877777777788888888877
No 63
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=34.65 E-value=1.4e+02 Score=32.74 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH--HHHHHH
Q psy11203 227 LVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL--LGKSCK 304 (438)
Q Consensus 227 v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL--~~~sc~ 304 (438)
++..+.++..+++.+-+.+.++..+... +++++|++.-.--.|.- +-..+.
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyv---------------------------Pt~eEYl~na~vS~g~~~ll~~~~~ 678 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYV---------------------------PTLDEYIKNGITSIGQRILLLSGVL 678 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------CCHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHHhccccccccHHHHHHHH
Confidence 4555666677777777777666433322 48999998766555542 222222
Q ss_pred HHHHhcC-CCHHHHHHHH-----HHHHHHHHHHHHHhhhccccCCCC
Q psy11203 305 GTLKLAG-QDAELQEQGY-----QFGKHLALAWQACLDLEPFTSNYA 345 (438)
Q Consensus 305 ~gailag-~~~~~~~~l~-----~fG~~LGiAFQi~DDllD~~~d~~ 345 (438)
.+ ++. .+++..+... ++-+..+...-+.||+..|..+.+
T Consensus 679 ~~--~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~ 723 (817)
T 3sdr_A 679 IM--DGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKA 723 (817)
T ss_dssp TC--TTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC---
T ss_pred HH--cCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHh
Confidence 22 121 3555555554 667888899999999999976644
No 64
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=33.01 E-value=1.2e+02 Score=28.91 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 162 ALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 162 ~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
.+...-+.|=.|+=|.||+.|- ++ .+.|+ +|.-..+|-.-|--.-.-++.+|...|..++.
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~D-l~~gK-~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 272 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKD-AEAHK-ATFVSLLGLAGAKSRAADLVAEAEAALAPYGE 272 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-----------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccch-hhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666677788889999999883 34 57788 89999999888888888888999998888863
No 65
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=32.61 E-value=2.7e+02 Score=26.64 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccC------------CCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVN------------ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD------------~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
....+...-+.|=.|+=|.|||.| .++ .+.|+ +|.-..+|-..|--.-+-+..+|...|..++.
T Consensus 211 ~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~D-l~~gK-~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 286 (313)
T 3lom_A 211 IKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSD-QANQK-TTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS 286 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------C-CCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcch-hhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344567777788889999999977 245 67889 99999999998888888888899888888763
No 66
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=31.92 E-value=1.5e+02 Score=28.79 Aligned_cols=63 Identities=13% Similarity=0.000 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccCC------------CCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVNI------------TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR 223 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD~------------s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~ 223 (438)
....+...-+.|=.|+=|.|||.|- ++ .+.|+ +|.-..+|-.-+.-.-+-+..+|...|..++
T Consensus 243 ~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D-l~egK-~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 243 ERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKD-AARGK-GTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------C-CCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchH-HhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455677777888899999999772 44 57788 8888888887777777778888888887775
No 67
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=31.42 E-value=1.1e+02 Score=29.21 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccC------------CCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccC
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVN------------ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR 223 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD------------~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~ 223 (438)
....+...-+.|=.|+=|.||+.| .++ .+.|+ +|.-..+|-.-|.-.-+-+..+|...|..++
T Consensus 199 ~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~D-l~~gK-~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 199 TKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSD-LENNK-STYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchH-HHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777778889999999987 356 67788 8888888877777777778888888888875
No 68
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=31.09 E-value=1.1e+02 Score=29.59 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccC------------CCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 159 SQRALAEVTEMIRTSHLVHKGIVN------------ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 159 ~~~~lA~avElIHtAsLIHDDIiD------------~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
....+...-+.|=.|+=|.|||.| .++ .+.|+ +|.-..+|-.-|--.-+-+..+|...|..++.
T Consensus 210 ~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~D-l~egK-~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 210 QFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKD-RDHNK-PNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC----------------C-CCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccch-hhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344567777788889999999977 235 67788 99999999888888888888889888888764
No 69
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=30.33 E-value=3.4e+02 Score=25.27 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC---C--CCChH
Q psy11203 282 PALADWTTRNVLSAGSLLGK-SCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTI---F--NLTSA 355 (438)
Q Consensus 282 ~t~e~yl~~i~~KTasL~~~-sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~~~g~d---~--gk~Tl 355 (438)
+++++|+..-....|.-+-. .+..+. =-..+++..+...++-+..+...-+.||+..|..+...|.. . ...+.
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 58999998877777754322 222222 11246677677888889999999999999999776543321 1 14455
Q ss_pred HHHHHhc
Q psy11203 356 PVMFHLE 362 (438)
Q Consensus 356 Pvl~al~ 362 (438)
..+|.-+
T Consensus 245 V~~~m~~ 251 (320)
T 3bny_A 245 VQILAQE 251 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 70
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=30.17 E-value=3e+02 Score=28.63 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHH-HHHHH
Q psy11203 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLL-GKSCK 304 (438)
Q Consensus 226 ~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~-~~sc~ 304 (438)
.++..+.++..+++.+-+.+..+...... +|+++|+..-..-.|.-. -....
T Consensus 361 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~v---------------------------Pt~eEYl~~~~vS~g~~~l~~~~~ 413 (549)
T 1n1b_A 361 FCLQYLRKSVVDLVEAYFHEAKWYHSGYT---------------------------PSLDEYLNIAKISVASPAIISPTY 413 (549)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------------CCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------------------CCHHHHHHhcccchhHHHHHHHHH
Confidence 46677788888999888888777543322 489999987655444321 11111
Q ss_pred HHHHhcC-CCHHH-HHH---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChHHHHHHhcc
Q psy11203 305 GTLKLAG-QDAEL-QEQ---GYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQ 363 (438)
Q Consensus 305 ~gailag-~~~~~-~~~---l~~fG~~LGiAFQi~DDllD~~~d~~~g~d~gk~TlPvl~al~~ 363 (438)
.+ ++. .+++. .+. .-++-+..++..-+.||+..|..+.+.|. ..+.-.+|.-++
T Consensus 414 ~~--~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~---v~n~V~cyMke~ 472 (549)
T 1n1b_A 414 FT--FANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGD---VPKTIQCYMKET 472 (549)
T ss_dssp TT--STTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------C---CCCHHHHHHHHH
T ss_pred HH--cCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCC---ccHHHHHHHHHc
Confidence 11 111 23343 333 34567788999999999999876644331 224444454443
No 71
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=23.60 E-value=1.5e+02 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhhCccC------------CCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCc
Q psy11203 161 RALAEVTEMIRTSHLVHKGIVN------------ITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRN 224 (438)
Q Consensus 161 ~~lA~avElIHtAsLIHDDIiD------------~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~ 224 (438)
..+...-+.|=.|+=|.||+.| .++ .+.|+ +|.-..+|-.-|--.-+-+..+|...|..++.
T Consensus 212 ~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~D-l~egK-~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 212 PHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD-QELNK-STYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----------------C-CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchH-HhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4466667778888999999977 234 57788 88888898888888888888999999988863
No 72
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=21.42 E-value=1.7e+02 Score=21.24 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Q psy11203 67 NRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGS 107 (438)
Q Consensus 67 ~~~v~~a~k~v~~p~s~~~l~~ll~~el~~v~~~l~~~l~s 107 (438)
..++.+-..+...|.-|..+..++.+|+.+|...+.+.-.+
T Consensus 11 ~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~~ 51 (60)
T 3k6t_A 11 ADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFP 51 (60)
T ss_dssp HHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 34555556677788889999999999999999988876553
No 73
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=20.43 E-value=2.3e+02 Score=30.84 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHH-HHHHHH
Q psy11203 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL-LGKSCK 304 (438)
Q Consensus 226 ~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL-~~~sc~ 304 (438)
.++..+.++..+++.+-+.+..+..+... +|+++|+..-.--.|.- +-..+.
T Consensus 566 ~~~~yl~~aw~~l~~ayl~EAkW~~~gyv---------------------------PT~eEYl~na~vSsg~~~l~~~~~ 618 (764)
T 3p5p_A 566 DMLAHIRKPWELYFNCYVQEREWLEAGYI---------------------------PTFEEYLKTYAISVGLGPCTLQPI 618 (764)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------CCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------CCHHHHHHhcchhchHHHHHHHHH
Confidence 35667777888888888887776543322 48999998766555542 222222
Q ss_pred HHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhhhccccCCCC
Q psy11203 305 GTLKLAG-QDAELQEQG---YQFGKHLALAWQACLDLEPFTSNYA 345 (438)
Q Consensus 305 ~gailag-~~~~~~~~l---~~fG~~LGiAFQi~DDllD~~~d~~ 345 (438)
.+ ++. .+++..+.. .++-+..+...-+.||+..|..+.+
T Consensus 619 ~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~ 661 (764)
T 3p5p_A 619 LL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661 (764)
T ss_dssp HT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHh
Confidence 22 121 344444444 3567788889999999999875533
Done!