RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11203
(438 letters)
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 126 bits (319), Expect = 5e-33
Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 78/374 (20%)
Query: 89 LLSDEIANVALHLRKLVGSNHPLL-KTAKSLLYNGRNNMQAWGLIVLLISKAAG----HL 143
L++DE++ ++ LR++V + P L A+ G Q I+LL++ A
Sbjct: 13 LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEA 72
Query: 144 NVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVH------------KGIVNITPGLYSEP 191
+ E + + + QR +AE+TEMI + L+H G +N
Sbjct: 73 LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLN--------- 123
Query: 192 VVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQN 251
+ GNK+++L+GD+LLS +C LAAL+N +V L++ AV L E +
Sbjct: 124 -----VVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETM------- 171
Query: 252 NPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG 311
+ +T+ T S + + + SL+ SCK L G
Sbjct: 172 -----E-ITSSTEQRYS---------------MDYYMQKTYYKTASLISNSCKAVAVLTG 210
Query: 312 QDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVMFHLEQ 363
Q AE+ +++G++L LA+Q D+ FT A + +T AP++F +E+
Sbjct: 211 QTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT-APILFAMEE 269
Query: 364 EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423
+L +++ + N+D + K G++ ++L +H+ A + E+D
Sbjct: 270 --FPQLREVVDQVEKDPRNVD--IALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETD 325
Query: 424 ------ARTALSNI 431
+R AL ++
Sbjct: 326 NEDVKRSRRALIDL 339
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein
structure initiative, isoprene biosynthesis,
transferase; 2.30A {Bacteroides thetaiotaomicron}
Length = 334
Score = 90.8 bits (226), Expect = 2e-20
Identities = 61/370 (16%), Positives = 127/370 (34%), Gaps = 73/370 (19%)
Query: 81 TSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWG-----LIVLL 135
S ++ + E+ + + ++ LL + + + + G ++VLL
Sbjct: 4 DSISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHI------RKRNGKMMRPILVLL 57
Query: 136 ISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYSEPV 192
+++ G V + A E++ T+ LVH +V G S
Sbjct: 58 VARLYG-------------AVTPATLHAAVSLELLHTASLVHDDVVDESTERRGQLS--- 101
Query: 193 VLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNN 252
+N F NK+++L+GDYLL+ S N ++ L+S + L E E L ++ N
Sbjct: 102 -VN-AIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSN- 158
Query: 253 PLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312
S + ++ T +L +
Sbjct: 159 --------HSFSEEVYFDVIRK-------------KT------AALFAACAEAAALSVQV 191
Query: 313 DAELQEQGYQFGKHLALAWQACLDLEPFTSNYA----PGTIF---NLTSAPVMFHLEQEK 365
E G+++ + +Q D+ + + G LT P ++ L K
Sbjct: 192 GEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLT-LPALYALNTTK 250
Query: 366 SDE---LLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422
+ ++ +GT + I ++ G+ + +Q+ ++A +L +S
Sbjct: 251 DAWAEQIAFKVKEGTATPDEIV--RLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDS 308
Query: 423 DARTALSNII 432
+ AL +
Sbjct: 309 NICLALRTYL 318
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 90.4 bits (225), Expect = 2e-20
Identities = 62/374 (16%), Positives = 133/374 (35%), Gaps = 85/374 (22%)
Query: 84 LSLRWLLSDEIANVALHLRKLVGSNHPLL-KTAKSLLYNGRNNMQAWG-----LIVLLIS 137
LS + L+ I V L + + S+ + K A +L +G G + VLL
Sbjct: 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG-------GKRVRPMFVLLSG 56
Query: 138 KAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYSEPVVL 194
A E++ + LVH + ++ G S +
Sbjct: 57 FLND-------------TQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTS----V 99
Query: 195 NDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPL 254
+ + F A+ +G +LL+ + +A + N ++ S + ++ EF
Sbjct: 100 H-IAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFD---------- 148
Query: 255 PPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA-----GSLLGKSCKGTLKL 309
Q+ + + + L L+ SC
Sbjct: 149 ---------------QMADRFN--------YPVSFTAYLRRINRKTAILIEASCHLGALS 185
Query: 310 AGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPV---M 358
+ D + QFG + +++Q D+ +TS+ A G+ ++T P+ +
Sbjct: 186 SQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHIT-YPLMAAI 244
Query: 359 FHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQV 418
+L+++ D+L + T + + Y+ + + V + G+ + L +++ +A L
Sbjct: 245 ANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQ 303
Query: 419 FKESDARTALSNII 432
++S+ + L I
Sbjct: 304 LQDSNIKDYLEEIH 317
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 89.6 bits (223), Expect = 4e-20
Identities = 55/374 (14%), Positives = 127/374 (33%), Gaps = 83/374 (22%)
Query: 82 SFLSLRWLLSDEIANVALHLRKLVGSNHPLL-KTAKSLLYNGRNNMQAWG-----LIVLL 135
+ ++ + +L + V ++ + +LL +G G L
Sbjct: 13 QLWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG-------GKLLRPGYFYL 65
Query: 136 ISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITP---GLYSEPV 192
S ++ +A A E++ L+H +++ +P G+ +
Sbjct: 66 FSTFGNAATPAQL------------QAGAAAIEILHVGTLIHDDVIDDSPTRRGVRT--- 110
Query: 193 VLNDMTFGNKIALLSGDYLLSNSCSELAA-LRNQHLVELMSGAVRDLTESEFLGRRDLQN 251
+ MT+G + A+ +GD++ + ++ ++ L++ A+ + + E
Sbjct: 111 -IQ-MTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELH------- 161
Query: 252 NPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA-----GSLLGKSCKGT 306
Q+ + D T L+ L SC
Sbjct: 162 ------------------QMDLNYR--------EDITLDAYLNEIAGKTAELFALSCYQG 195
Query: 307 LKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVM 358
+LAG + ++ G + A+Q D+ + + + P++
Sbjct: 196 AQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYS-LPLL 254
Query: 359 FHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQV 418
L D K +++T D K V +V++ G+ KQL + ++ +A+ ++Q
Sbjct: 255 LSLSHAPRDFHKLLKKK--QAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQ 312
Query: 419 FKESDARTALSNII 432
A+ +L +
Sbjct: 313 LPVGSAQQSLEQLT 326
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 88.5 bits (220), Expect = 1e-19
Identities = 67/394 (17%), Positives = 134/394 (34%), Gaps = 80/394 (20%)
Query: 61 TNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLL-KTAKSLL 119
+ + + A + S L L ++A V + + S+ ++ A+ L+
Sbjct: 2 AHHHHHHSLDAAAATLPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLI 61
Query: 120 YNGRNNMQAWG-----LIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSH 174
G G L+ + ++ AG + LA E I T+
Sbjct: 62 AAG-------GKRLRPLMTVAAARLAG-------------ADNDHFQKLAAAVEFIHTAT 101
Query: 175 LVHKGIV---NITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELM 231
L+H +V + G + + + +G ++L GD+L + + + + +E++
Sbjct: 102 LLHDDVVDGSQLRRGKVA----AH-LIWGGAQSVLVGDFLFARAFELMVETNSMKALEIL 156
Query: 232 SGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRN 291
+ A R + E E L Q+M S D L+
Sbjct: 157 ARASRVIAEGEVL-------------------------QLMRSHD-----LNLSQAVYLE 186
Query: 292 VLSA--GSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA---- 345
++ A L + + AG D E +G +L LA+Q D +
Sbjct: 187 IIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGK 246
Query: 346 -PGTIF---NLTSAPVMFHLEQEKSDE---LLNEINKGTESVTNIDYKKVYNIVSKGPGM 398
G F T P++ + + E I + ++ D+++ ++ +
Sbjct: 247 NAGDDFREGKAT-LPLLLAIARSGPREAEFWERAIGRREQT--EADFRRARELIIGSGAL 303
Query: 399 RLTKQLQKQHSQQAMKVLQVFKESDARTALSNII 432
T L ++ +A L +F +D R AL +
Sbjct: 304 DATLDLAADYADKAKAALAMFPANDWREALEELA 337
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 86.2 bits (214), Expect = 1e-18
Identities = 65/367 (17%), Positives = 119/367 (32%), Gaps = 78/367 (21%)
Query: 86 LRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWG-----LIVLLISKAA 140
L ++D + V L + S L L +A G + LL S+
Sbjct: 36 LTARINDAMVQVEELLHTELSSGEDFLVDIVMHL------TRAGGKRFRPMFALLASEFG 89
Query: 141 GHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITP---GLYSEPVVLNDM 197
+ V+ A V E+ + L H +++ G+ S N
Sbjct: 90 EK--------PLSENVIK----AAVVVEITHLATLYHDDVMDEASMRRGVPS----AN-A 132
Query: 198 TFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQ 257
+ N +A+L+GD LL+++ S L + V + +L + +
Sbjct: 133 RWDNSVAILAGDILLAHA-SGLMSQLGTDTVAHFAETFGELVTGQMR---ETVG------ 182
Query: 258 FLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA--GSLLGKSCKGTLKLAGQDAE 315
P D++ I + V+ G L+ + AG E
Sbjct: 183 -------PRDTDPIEHYTN---------------VIREKTGVLIASAGYLGAMHAGAAPE 220
Query: 316 LQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVMFHLEQ--EK 365
+ FG + + +Q D+ S PGT T PV++ L +
Sbjct: 221 HIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFT-LPVLYALREDTPV 279
Query: 366 SDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDAR 425
EL + + E ++ V ++S+ G + ++ A L +S +
Sbjct: 280 GAELRDILTGPLEDDETVN--HVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVK 337
Query: 426 TALSNII 432
AL N+
Sbjct: 338 EALRNLA 344
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 77.3 bits (191), Expect = 7e-16
Identities = 68/377 (18%), Positives = 130/377 (34%), Gaps = 83/377 (22%)
Query: 80 PTSFLSLRWLLSDEIANVALHLRKLVGSNH-PLL-KTAKSLLYNGRNNMQAWG-----LI 132
L L++++A V +R+ + S H P + + L+ G G ++
Sbjct: 8 TKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG-------GKRLRPML 60
Query: 133 VLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYS 189
L ++ G+ + LA E I T+ L+H +V G +
Sbjct: 61 TLAAARLVGYGGPFHVH-------------LAATVEFIHTATLLHDDVVDESRQRRGRPT 107
Query: 190 EPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDL 249
N + + NK ++L GDYL + S + N ++E+++ A + E E L
Sbjct: 108 ----AN-LLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVL----- 157
Query: 250 QNNPLPPQFLTTKTSPDDSNQI-MESLDELPMTPALADWTTRNVLSA--GSLLGKSCKGT 306
Q LT + + I + V+ +L + +
Sbjct: 158 -------Q-LTAAQNLATTEDIYLR------------------VIRGKTAALFSAATEVG 191
Query: 307 LKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVM 358
+ G + + + +G L +A+Q DL + A G F LT PV+
Sbjct: 192 GIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLT-MPVI 250
Query: 359 FHLEQ---EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKV 415
+ + I KG + + D + +++K + T+ + A K
Sbjct: 251 KAVALADEAERAFWKRVIEKGDQ--QDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKA 308
Query: 416 LQVFKESDARTALSNII 432
L + R L ++
Sbjct: 309 LAKLPDHPLRQMLDDLA 325
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 62.2 bits (152), Expect = 6e-11
Identities = 53/360 (14%), Positives = 118/360 (32%), Gaps = 77/360 (21%)
Query: 89 LLSDEIANVALHLRKLVGS-NHPLL-KTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVD 146
+ ++ + + + + + + + + ++ LL K
Sbjct: 1 MQEKQLKAIQNKIASWIKEIESGFIDELFSKIGPSKMLRSKL--MLALLNEKTDA----- 53
Query: 147 EMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYSEPVVLNDMTFGNKI 203
+L L + EMI+T+ L+H ++ + L S +N FGN
Sbjct: 54 --------ILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPS----IN-ALFGNFN 100
Query: 204 ALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKT 263
A++ GD S + EL+ + + + +S AV L+ E D+ +
Sbjct: 101 AVMLGDVFYSKAFFELSKMGEL-IAQALSNAVLRLSRGEIE---DVFVGECF------NS 150
Query: 264 SPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQF 323
+I+E T + S K L +DA++ F
Sbjct: 151 DKQKYWRILED-------------KT------AHFIEASLKSMAILLNKDAKIY---ADF 188
Query: 324 GKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVMFHLEQEKSDE---LLNE 372
G + +A+Q DL T + + F T P + E+ + L++
Sbjct: 189 GLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTT-LPYLLLYEKLNQHDQGLLISY 247
Query: 373 INKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNII 432
+ + + + + T + + +S++A++ + + + L +
Sbjct: 248 FKQDSHE----IIEWTKEKFKQYGIIEETLKTAQVYSKKALEAI----KGENNLILEKLA 299
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 61.5 bits (150), Expect = 9e-11
Identities = 48/286 (16%), Positives = 95/286 (33%), Gaps = 67/286 (23%)
Query: 163 LAEVTEMIRTSHLVHKGIVNITPGLYSE-----PVVLNDMTFGNKIALLSGDYLLSNSCS 217
+ EVTEM+ + L+ I + S+ PV +G + S +Y+
Sbjct: 50 IIEVTEMLHNASLLIDDIED-----NSKLRRGFPVA--HSIYGIPSVINSANYVYFLGLE 102
Query: 218 ELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDE 277
++ L + V+L + + +L + + L D+ N + +E
Sbjct: 103 KVLTLDHPDAVKLFTRQLLELHQGQGL---DIYWR---------------DNYTCPTEEE 144
Query: 278 -LPM----TPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQ 332
M T G L G + + +L L L +Q
Sbjct: 145 YKAMVLQKT--------------GGLFGLAVGLMQLFSDYKEDL----KPLLNTLGLFFQ 186
Query: 333 AC---LDLEPFTSNYAPGTIF--NLT----SAPVMFHLE-QEKSDELLNEINKGTESVTN 382
+L + Y+ F +LT S P + + + +S ++ N + + TE++
Sbjct: 187 IRDDYANL--HSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDI 244
Query: 383 IDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTAL 428
Y + + T+ K+ +A K + + AL
Sbjct: 245 KKY--CVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVAL 288
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 61.5 bits (150), Expect = 9e-11
Identities = 45/364 (12%), Positives = 109/364 (29%), Gaps = 96/364 (26%)
Query: 89 LLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWG-----LIVLLISKAAGHL 143
S E+ V + +++ P + L G + +L K G
Sbjct: 8 QNSYELEKVKERIEQILSQFFP--EQIMKDLPLY-------GKMLRVRLSILSFKNRGVE 58
Query: 144 NVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYSEPVVLNDMTFG 200
++ + E++ + L+H ++ G + +N +G
Sbjct: 59 IGEDA------------ISSLAALELVHLASLLHDDVIDGARFRRGKET----IN-FMYG 101
Query: 201 NKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLT 260
+K A+ +GD +L ++ + + N L + ++E+E +
Sbjct: 102 DKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELI---------------- 145
Query: 261 TKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA-----GSLLGKSCKGTLKLAGQDAE 315
+ + + T L G+L G + + L G+
Sbjct: 146 ---------EQLSRYKPI---------TKEEYLRIVEGKSGALFGLALQLPALLEGEL-- 185
Query: 316 LQEQGYQFGKHLALAWQACLDLEPFTSNYA----PGTIF---NLTSAPVMFHLEQEKSDE 368
E Y G + +Q D+ F + P++ +E+
Sbjct: 186 -GEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVAS-FPLVTAMEKFPEAR 243
Query: 369 LLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMK---VLQVFKESDAR 425
+ N D+ + + + + ++ ++ K + + L+ F + +
Sbjct: 244 ---------QMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVDGIFK 294
Query: 426 TALS 429
+S
Sbjct: 295 IKIS 298
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 60.3 bits (147), Expect = 3e-10
Identities = 60/308 (19%), Positives = 96/308 (31%), Gaps = 85/308 (27%)
Query: 131 LIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGL 187
+I+LL+S+ G A EM+ ++ L+H ++ + L
Sbjct: 48 IILLLVSEICS-------------GSYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNL 94
Query: 188 YSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRR 247
S FG ALL GDYL++ S + + +++ A D+ E E L
Sbjct: 95 PS----AP-EKFGPSGALLCGDYLIAKS-IAFISPYGEKVIQDFGKAGMDMAEGEVL--- 145
Query: 248 DLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTL 307
DL+ +D + + T SL S
Sbjct: 146 DLKLE-------DESFGENDYFKCIYK-------------KT------ASLFAISASIGA 179
Query: 308 KLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIF---NLTSAPVMFHLEQE 364
G + EL E+ FG L A+Q D+ F G + T P ++
Sbjct: 180 YTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEV-VEGKESKFTSET-LPHIYMKSTS 237
Query: 365 KSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDA 424
K + L + + K H A + L+ F+E A
Sbjct: 238 KEEAL-----------------------------KKSIDCVKLHVAAAKETLETFRECPA 268
Query: 425 RTALSNII 432
R L I
Sbjct: 269 RDKLFQIT 276
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 60.4 bits (147), Expect = 3e-10
Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 44/255 (17%)
Query: 199 FGNKIALLSGDYLLSNSCSELAALRN-QHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQ 257
FG+ A+L G + + + ++ ++ + E E L D+
Sbjct: 104 FGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERL---DILFEAAGRS 160
Query: 258 FLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA--GSLLGKSCK-GTLKLAGQDA 314
+ + + + ++S G+L+ + K G L D
Sbjct: 161 DPYFVQARWREVTLDDYIK---------------MVSLKTGALIAAAAKWGVL-SVSDDR 204
Query: 315 ELQEQGYQFGKHLALAWQAC---LDLEPFTSNYAPGTIF----------NLTSAPVMFHL 361
L E + FG +A+Q LD+ Y F + V+
Sbjct: 205 GLAEAAWNFGMAAGVAFQIIDDVLDI------YGDPKKFGKEIGKDIKEHKRGNAVVAVA 258
Query: 362 EQEKSDELLNEINK--GTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVF 419
+ + + E V D ++ ++ +L ++ ++A + L
Sbjct: 259 LSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKI 318
Query: 420 KESDARTALSNIIVA 434
+ L + IVA
Sbjct: 319 PNNGTLKELLDFIVA 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 60/386 (15%), Positives = 110/386 (28%), Gaps = 154/386 (39%)
Query: 18 SLPPCI----LAHQSALCR----------SSSSAVSTTTESSSAAKFTPTHTVPSSNTNR 63
S P I LAH + S + ++ A + +
Sbjct: 237 SCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA------VAIAETDSW 289
Query: 64 PDWNRAVSEAEKI---VG------YPTSFLSLRWLLSDEIAN--------VAL------H 100
+ +V +A + +G YP + L +L D + N +++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 101 LRKLVGSNHPLLKTAKSL---LYNGRNNMQAWGLIVLLISKAAGH------LNVDEMEED 151
++ V + L K + L NG N+ V+ +G LN+ + +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNL------VV-----SGPPQSLYGLNL-TLRKA 396
Query: 152 KAAG------VLHSQRALAEVTEMIRTS---HLVHKGIVNITPGLYS-EPVVLNDMTFGN 201
KA + S+R L + + H + L ++ D
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---------SHLLVPASDLINKD----- 442
Query: 202 KIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTT 261
L + + N+ ++ V D T G DL+
Sbjct: 443 ----LVKNNVSFNA-KDIQI------------PVYD-TFD---G-SDLRVL--------- 471
Query: 262 KTSPDDSNQIMESL-DELPMTPALADWTTRNVLSA--------------GSLLGKSCKGT 306
S I E + D + P W T A G L ++ GT
Sbjct: 472 ------SGSISERIVDCIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 307 ---LKLAGQDAELQ---EQGYQFGKH 326
+ +AG ++ + G+ K
Sbjct: 524 GVRVIVAG-TLDINPDDDYGF---KQ 545
Score = 52.7 bits (126), Expect = 2e-07
Identities = 92/556 (16%), Positives = 155/556 (27%), Gaps = 197/556 (35%)
Query: 18 SLPPCILAHQSALCRSSSSAVSTTTESSSAA-----KFTPTHTVPSSNTNRPDWNRAVSE 72
S P L+H S V T S A +F P+ D +
Sbjct: 5 STRPLTLSHGSL---EHVLLVPTA--SFFIASQLQEQFNKILPEPTEGFAADD--EPTTP 57
Query: 73 AE---KIVGY---------PTSFLSL----------RWLLSDEIANVALHL--------- 101
AE K +GY F + +L ++I +A L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 102 -RKLV---------GSNHPLLKTAKSLLYN--------------GRNNMQAW-------- 129
K + + P K + S L+ G+ N +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 130 ----GLIVLLISKAAGHLNVDEMEEDKAAGVLHSQ-----RALAEVTEMIRTSHLVH--- 177
L+ LI +A L+ + + A + +Q L + +L+
Sbjct: 178 QTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 178 --KGIVNITPGL-----YSEPVVLNDMTFGNKIALLSGDYLLSNSCSE--LAAL------ 222
I G+ Y L T G + L G + S+ + A+
Sbjct: 237 SCPLI-----GVIQLAHYVVTAKLLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETD 287
Query: 223 RNQHLVELMSGAVRDLTESEFLGRRDLQNNP---LPPQFLTTKTSPDDSNQIMESLDELP 279
+ + A+ L F+G R + P LPP L +DS +E
Sbjct: 288 SWESFFVSVRKAITVLF---FIGVRCYEAYPNTSLPPSIL------EDS----LENNEGV 334
Query: 280 MTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQA------ 333
+P L S + ++Q+ + HL Q
Sbjct: 335 PSPML-----------------SISNLTQ-----EQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 334 -----------------CLDLE-------------PFTSNYAP--GTIFNLTSAPVMFH- 360
L L PF S F ++P FH
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSNRFLPVASP--FHS 429
Query: 361 -LEQEKSDELLNEINKGTESVTNIDYKK-VYNIVSKGPGMR-LTKQLQKQHSQQAMKVLQ 417
L SD + ++ K S D + VY+ G +R L+ + ++ + L
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCII-RLP 487
Query: 418 VFKESDARTALSNIIV 433
V E+ + ++I+
Sbjct: 488 VKWETTTQFKATHILD 503
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 54.2 bits (131), Expect = 3e-08
Identities = 61/398 (15%), Positives = 125/398 (31%), Gaps = 113/398 (28%)
Query: 81 TSFLSLRWLLSDEIANVALHLRKLVGSNHPLL--KTAKSLLYNGRNNMQAWG-----LIV 133
+ L + ++ + + +L+ P + + A+ G G +V
Sbjct: 2 EKYEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG-------GKRVRPFVV 54
Query: 134 LLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVV 193
L ++A G G A E+I LVH I++
Sbjct: 55 LTSTEAVG-------------GDPLRAIYPAVAIELIHNYSLVHDDIMD----------- 90
Query: 194 LNDMT----------FGNKIALLSGDYLLSNS-----CSELAALRNQHLVELMSGAVRDL 238
D T +G +A+L+GD L S + +E+ + ++E++ A +L
Sbjct: 91 -MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNEL 149
Query: 239 TESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSL 298
E + DL+ + ++ +++ T G+L
Sbjct: 150 CEGQAR---DLEFEKKS------TVTIEEYMEMISG-------------KT------GAL 181
Query: 299 LGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQAC---LDLEPFTSNYAPGTIF----- 350
S K + + E + +G+++ +A+Q LDL A
Sbjct: 182 FEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDL------IADEKKLGKPVG 235
Query: 351 -----NLTSAPVMFHLEQ---EKSDELLNEINKGT---------ESVTNIDYKKVYNIVS 393
+ V E + L K E D + +++
Sbjct: 236 SDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLK 295
Query: 394 KGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNI 431
K + ++ K ++A + L++ +S AR L +
Sbjct: 296 KYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELL 333
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 53.5 bits (129), Expect = 4e-08
Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 32/171 (18%)
Query: 82 SFLSLRWLLSDEIANVALHLRKLVGSNHPL-LKTAKSLLYNG----RNNMQAWGLIVLLI 136
+S+ + A + + + + SN L S + R G + +
Sbjct: 7 HHMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILKDGKRFR------GTLNMFF 60
Query: 137 SKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV---NITPGLYSEPVV 193
+ A G G + A E++ ++ L IV G +
Sbjct: 61 TVALG-------------GDIKDSYGGALAIEILHSASLALCDIVDLDATRRGDKA---- 103
Query: 194 LNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFL 244
+ +GN+ + +YL+ + + + +D +
Sbjct: 104 AW-VVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALR 153
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 51.2 bits (123), Expect = 2e-07
Identities = 41/318 (12%), Positives = 93/318 (29%), Gaps = 78/318 (24%)
Query: 84 LSLRWLLSDEIANVALHLRKLVGSNHPLL--KTAKSLLYNGRNNMQAWG-----LIVLLI 136
SL + + V L K+ P+ K + + G L++L
Sbjct: 4 YSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP-------GKLLRPLLLLTF 56
Query: 137 SKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITP---GLYSEPVV 193
+ + + + + A + E++ L+ +++ G+ +
Sbjct: 57 TYSIDR---RSIMDPRI-------LEAAAIVELLHVVSLLQDDVMDQHDQRRGIKT---- 102
Query: 194 LNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNP 253
+G+ A+++ D+L++ ++A +V ++ + L+ + L DL+
Sbjct: 103 -PRAMYGDGRAIVASDWLIAE-SIKMAVNLGADVVTYLADVAQRLSVGQAL---DLEGER 157
Query: 254 LPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQD 313
+ KT L+ + L + G+
Sbjct: 158 D--KAAEFKT--------------------------------APLIEAALVMPLVILGRR 183
Query: 314 AELQEQGYQFGKHLALAWQACLDLEPFTSNYA----PGTIFNLTSAPVMFHLEQ--EKSD 367
EL E + G L + +Q D + H+ +
Sbjct: 184 -ELIETAKKLGTKLGILYQYSDDYSDENVERPETKSIANEIGRYLLKIKEHVGDAIAPFE 242
Query: 368 ELLNE-INKGTESVTNID 384
L+ I K E +
Sbjct: 243 RLIKYLIGKALEGTLTVS 260
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 47.7 bits (114), Expect = 4e-06
Identities = 41/260 (15%), Positives = 79/260 (30%), Gaps = 64/260 (24%)
Query: 199 FGNKIALLSGDYLLSNSC---SELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLP 255
G A+L GD L + + EL + ++ A R L + + D+
Sbjct: 113 HGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQ---DISY---- 165
Query: 256 PQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSA--GSLLGKSCK-GTLKLAGQ 312
+ S++E + G+LL + G + L G
Sbjct: 166 ------EHRDRV------SVEEC-----------LEMEGNKTGALLACASSIGAV-LGGA 201
Query: 313 DAELQEQGYQFGKHLALAWQAC---LDLEPFTSNYAPGTIF----------NLTSAPVMF 359
D + ++G HL LA+QA L + + S PV+
Sbjct: 202 DERTADTLEKYGYHLGLAFQAVDDLLGI------WGDPDATGKQTWSDLRQRKKSLPVVA 255
Query: 360 HLEQ--EKSDELLNEINK-----GTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQA 412
L S+ L + + + ++ ++ + G T ++ A
Sbjct: 256 ALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIA 315
Query: 413 MKVLQVFKESD-ARTALSNI 431
++ L D R + +
Sbjct: 316 IEALDAVDMPDRVRDRFTAL 335
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 47.4 bits (113), Expect = 5e-06
Identities = 40/323 (12%), Positives = 87/323 (26%), Gaps = 60/323 (18%)
Query: 130 GLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYS 189
GL V+ + + E + A A+ E+ + + LV I++ +
Sbjct: 75 GLTVVAAYRELSGPGQKDAESLRCA------LAVGWCIELFQAASLVADDIMDQSLTRRG 128
Query: 190 EPVVLNDMTFGNKIALLSGDYLLSNSCSELAAL------RNQHLVELMSGAVRDLTESEF 243
+ G + ++ +LL +S + HL+EL +
Sbjct: 129 QLCWYK--KEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQM 186
Query: 244 LGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSC 303
L DL P+ L + S + I + T + S
Sbjct: 187 L---DLITAPVSKVDL-SHFSEERYKAI-------------VKYKT----AFYSFYLPVA 225
Query: 304 KGTLKLAGQDAELQEQGYQFGKHLALAWQA---CLDLEPFTSNYAPGTIF---------N 351
+ E E + +Q LD + + N
Sbjct: 226 AAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDC------FGDPALTGAVGTDIQDN 279
Query: 352 LTSAPV---MFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQH 408
S V + + E+ L + + KV + +Q ++
Sbjct: 280 KCSWLVVQCLQRVTPEQRQLLEDNYGRKEPE----KVAKVKELYEAVGMRAAFQQYEESS 335
Query: 409 SQQAMKVLQVFKESDARTALSNI 431
++ ++++ + +
Sbjct: 336 YRRLQELIEKHSNRLPKEIFLGL 358
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 41/387 (10%), Positives = 93/387 (24%), Gaps = 111/387 (28%)
Query: 64 PDWNRAV---SEAEKIVGYPTSFLSLR---WLLSDEIANVALHLRKLVGS----NHPLLK 113
D +++ E + I+ + W L + + +K V N+ L
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLM 95
Query: 114 TAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTS 173
+ + ++ + + L D K + R +
Sbjct: 96 SPIKTEQRQPS------MMTRMYIEQRDRLYNDNQVFAK----YNVSRL-----QPYLK- 139
Query: 174 HLVHKGIVNITPGLYSEPVVLNDMT-FGNKIALLSGDYLLSNSCSELAALRNQHLVELMS 232
+ + ++ + P V+++ + G K + L + + M
Sbjct: 140 --LRQALLELRPAKN---VLIDGVLGSG-K------------TWVALDVCLSYKVQCKMD 181
Query: 233 GAVRDLTESEFLGRRD--------LQN------NPLPPQFLTTKTSPDDSNQIMESLDEL 278
+ L L + LQ + + + I L L
Sbjct: 182 FKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 279 PMTPA-------LAD-W----------------TTRNVLSAGSLLGKSCKGTLKLAGQDA 314
+ L + TTR L +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--------HI 289
Query: 315 ELQEQGYQFGKHLALAWQA-CLDLEPFT-----SNYAPGTIFNLTSA-----PVMF-HLE 362
L + LD P P + ++ + + + +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWK 348
Query: 363 QEKSDELLNEINKGTESVTNIDYKKVY 389
D+L I + +Y+K++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF 375
Score = 36.0 bits (82), Expect = 0.026
Identities = 56/296 (18%), Positives = 96/296 (32%), Gaps = 93/296 (31%)
Query: 5 LLRSTSKSLLAR------QSLP-------PCILAHQSALCR-----------SSSSAVST 40
L KSLL + Q LP P L+ + R + ++T
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 41 TTESSSAAKFTPTHTVPSSNTNRPDWNR-AV-SEAEKIVGYPTSFLSLRW--LLSDEIAN 96
ESS P R ++R +V + I PT LSL W ++ ++
Sbjct: 358 IIESSLNV-LEP-------AEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMV 406
Query: 97 VALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGV 156
V L K SL+ + + + +L + E++ A
Sbjct: 407 VVNKLHK------------YSLV-EKQPKESTISIPSI-------YLELKVKLENEYA-- 444
Query: 157 LHSQRALAEVTEMIRT----------------SHLVH--KGIVNITPGLYSE-PVVLNDM 197
LH R++ + + +T SH+ H K I + + +V D
Sbjct: 445 LH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLDF 500
Query: 198 TF-GNKIALLSGDYLLSNSC-SELAALRN--QHLVE---LMSGAVRDLTESEFLGR 246
F KI S + S S + L L+ ++ + V + +FL +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPK 554
Score = 35.6 bits (81), Expect = 0.038
Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 40/203 (19%)
Query: 1 MASKLLRSTSKSLLARQSLPPCILAHQSALCRSSSSAVSTTTESSSAAKFTPTHTVPSSN 60
+ +KL + SL+ +Q I L S + T S +
Sbjct: 407 VVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 61 TNRPDWN-----------RAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNH 109
P + + + E++ + FL R+ L +I + + GS
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDST-AWNASGSIL 521
Query: 110 PLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEM 169
L+ K Y I + + +L + E +
Sbjct: 522 NTLQQLK--FYKPY------------ICDNDPKY--ERLVNA----ILDFLPKIEE--NL 559
Query: 170 IRTSH--LVHKGIVNITPGLYSE 190
I + + L+ ++ ++ E
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEE 582
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 43.0 bits (101), Expect = 1e-04
Identities = 38/335 (11%), Positives = 92/335 (27%), Gaps = 62/335 (18%)
Query: 130 GLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNIT----- 184
G++V+LI + + +++ E +KAA LA E+++ + LV I++
Sbjct: 84 GILVILIYEYVKNRDINSSEWEKAA-------CLAWCIEILQAAFLVADDIMDKGEMRRN 136
Query: 185 -PGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALR-------NQHLVELMSGAVR 236
Y + D LL + ++ A
Sbjct: 137 KYCWYL--------LKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATL 188
Query: 237 DLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPAL--ADWTTRNVLS 294
+ L + + + Q + ++ + T
Sbjct: 189 KTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKT----- 243
Query: 295 AGSLLGKSCKGTLKLAG--QDAELQEQGYQFGKHLALAWQA---CLDLEPFTSNYAPGTI 349
A + LAG D + ++ + +Q LD+ + T
Sbjct: 244 AYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI------FGDSTK 297
Query: 350 F---------NLTSAPVMFHLEQ---EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPG 397
N + P++ E +++ K + K + ++ +
Sbjct: 298 TGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLA----CVKVIDSLYEQYKI 353
Query: 398 MRLTKQLQKQHSQQAMKVLQVFKESDARTALSNII 432
+ + +K + + + L ++
Sbjct: 354 RKHYESYEKAQKAKILSAINELHHEGIEYVLKYLL 388
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 38.8 bits (91), Expect = 0.002
Identities = 36/258 (13%), Positives = 69/258 (26%), Gaps = 59/258 (22%)
Query: 199 FGNKIALLSGDYLLSNS-----CSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNP 253
+AL +GD + + L ++ VR + L DL
Sbjct: 98 HPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHL---DLLWTL 154
Query: 254 LPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGK-SCKGTLKLAGQ 312
T P+D +++ A + LAG+
Sbjct: 155 GG----TFDLRPEDYFRMVA-------------------HKAAYYTAVAPLRLGALLAGK 191
Query: 313 DAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPG------------TIFNLTSAPVMFH 360
+ G L A+Q D+ A G T+ ++
Sbjct: 192 TPP--AAYEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTL------ILLRF 243
Query: 361 LEQ---EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVL- 416
LE+ E+ L + E+ + + + + K K+ + + +L
Sbjct: 244 LEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLE 303
Query: 417 ---QVFKESDARTALSNI 431
Q +A L +
Sbjct: 304 AAFQDLPGKEALDHLRGL 321
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 38.9 bits (91), Expect = 0.003
Identities = 30/221 (13%), Positives = 63/221 (28%), Gaps = 53/221 (23%)
Query: 131 LIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIV--------- 181
L AA + + A E I+ L+H I+
Sbjct: 68 LYAWAGFLAAQGHKNSSEKLESVL-------DAAASLEFIQACALIHDDIIDSSDTRRGA 120
Query: 182 -----NITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNS-----CSELAALRNQHLVELM 231
+ + + FG +++L+GD L + S L+A +
Sbjct: 121 PTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAW 180
Query: 232 SGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRN 291
G ++ + L D+ S + ++ + + T
Sbjct: 181 RGMRTEVIGGQLL---DIYLESHAN------ESVELADSVNR-------------FKT-- 216
Query: 292 VLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQ 332
A + + +AG +L + +G + +A+Q
Sbjct: 217 ---AAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQ 254
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 37.8 bits (88), Expect = 0.006
Identities = 13/105 (12%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 163 LAEVTEMIRTSHLVHKGIVNITPGLYSE-----PVVLNDMTFGNKIALLSGDYLLSNSCS 217
++++ E++ S L+ I + + + FG + + +Y+ +
Sbjct: 65 VSQIVELLHNSSLLIDDIED-----NAPLRRGQTTS--HLIFGVPSTINTANYMYFRAMQ 117
Query: 218 ELAALRN-----QHLVELMSGAVRDLTESEF--LGRRDLQNNPLP 255
++ L +L+ + + + +L + + RD +P
Sbjct: 118 LVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIP 162
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 33.3 bits (75), Expect = 0.13
Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 37/218 (16%)
Query: 162 ALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAA 221
+A E+ T+ L+H + I + T+G IALL+GD L + S+++
Sbjct: 70 DVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX 129
Query: 222 LRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMT 281
+ N + E S L + + + E ++ +
Sbjct: 130 IGNSXIFEEFSETAYXLLLG---------------EAMDVEFERRXMEVSQEMVERM--- 171
Query: 282 PALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFT 341
G+L L G D G+ +A+Q DL
Sbjct: 172 ---------YAFXTGALFAFCFSAPFILXGXDHTXM---XLLGEXFGVAFQIYDDLXDIL 219
Query: 342 SNYA-----PGTIFNLTSAPVMFHLE--QEKSDELLNE 372
++ G + ++ +E +D E
Sbjct: 220 GSFEKVGKDLGKDTEXVTLVXXVGIQXAREMADXYYEE 257
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.15
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 16/34 (47%)
Query: 325 KHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVM 358
K L QA L L YA SAP +
Sbjct: 23 KKL----QASLKL------YADD------SAPAL 40
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 31.8 bits (73), Expect = 0.39
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 51 TP-THTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHL 101
TP H + RPD + + L + W+ +I+N L
Sbjct: 213 TPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFF 264
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 31.0 bits (71), Expect = 0.87
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 146 DEMEEDKAAGVLHSQRALAEVTEMIRTS-----HLVHKGIVNITPGLYSEPVVLNDMTFG 200
D + E+ G + E+ + ++ S L+ G G Y VL D+T
Sbjct: 299 DPLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPD 358
Query: 201 NKIA 204
Sbjct: 359 MTAF 362
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 31.0 bits (71), Expect = 0.90
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 146 DEMEEDKAAGVLHSQRALAEVTEMIRTS-----HLVHKGIVNITPGLYSEPVVLNDMTFG 200
D +E D ++S++A ++ ++ + + ++ + G + P +L D+
Sbjct: 296 DPLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKD 355
Query: 201 NKIA 204
N +
Sbjct: 356 NPVF 359
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 30.3 bits (69), Expect = 1.0
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 51 TP-THTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHL 101
TP P+ RPD E ++ L + ++ +I+N L L
Sbjct: 226 TPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFL 277
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 29.8 bits (68), Expect = 1.7
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 136 ISKAAGHLNV-DEMEEDKAAGVLHSQRALAEVTEMIRTS-----HLVHKGIVNITPGLYS 189
+ KA + V + + + G LH+++A++ + + +V+ G V PG Y
Sbjct: 323 LKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYV 382
Query: 190 EPVVLNDMTFGNKIA 204
EP ++ + IA
Sbjct: 383 EPTIVTGLGHDASIA 397
>3hsl_X ORF59; processivity, replication; 2.80A {Human herpesvirus 8} PDB:
3i2m_X
Length = 309
Score = 29.0 bits (64), Expect = 3.0
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 226 HLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIM---ESLDELPMTP 282
H EL V D + F + + + PQF+ T S D+ +D+ + P
Sbjct: 99 HTRELFGANVLDAGIA-FYRKGEACDTGAQPQFVRTTISYGDNLTSTVHKSVVDQKGILP 157
Query: 283 ALADWTTRNVLSAGSLLGKSCKGTLKLAGQ 312
+ L GK+ LK Q
Sbjct: 158 FHDRMEAGGRTTRLLLCGKTGAFLLKWLRQ 187
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 28.7 bits (65), Expect = 3.4
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 51 TP-THTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHL 101
T ++ P RPD + + ++ + +I+N L
Sbjct: 213 TDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFL 264
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural
genomics, PSI-2, protein structure initiative; 1.85A
{Pectobacterium carotovorum}
Length = 174
Score = 27.6 bits (61), Expect = 5.7
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 14/58 (24%)
Query: 134 LLISKAAGHLNVDEME--------------EDKAAGVLHSQRALAEVTEMIRTSHLVH 177
+ AG N D+ V + EVT + T+ +
Sbjct: 15 GTLEDIAGKYNTSLFAVVEALPTAQCTLATGDRFDQVWDTIATWGEVTLISHTADAIL 72
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core
flanked by 2 SETS of 3 helices and another 2 SETS of
helices; 2.05A {Escherichia coli O157}
Length = 164
Score = 27.6 bits (61), Expect = 6.2
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 12/56 (21%)
Query: 134 LLISKAAGHLNVDEME------------EDKAAGVLHSQRALAEVTEMIRTSHLVH 177
+ A N +E DK V + VT ++ T+ ++
Sbjct: 16 GTLEVVAEQYNTTLLEVVRNLPSSTVVPGDKFDTVWDTVCEWGNVTTLVHTADVIL 71
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 27.2 bits (61), Expect = 6.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 65 DWNRAVSEAEKIVGYPTSFL 84
D + + E + YPT
Sbjct: 91 DPSGKLLETYGVRSYPTQAF 110
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 28.0 bits (62), Expect = 6.9
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 300 GKSCKGTLKLAGQDAELQEQGYQFGKHLA--LAWQACLDLEPFTSNYAPGTIFNLTSAPV 357
G+S G D L +G +F KHLA ++ Q DL+ FTS T+ +
Sbjct: 258 GESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTS---QMKRTIQTAEAL 314
Query: 358 MFHLEQEKSDELLNEINKG 376
EQ ++LNEI+ G
Sbjct: 315 SVPYEQ---FKVLNEIDAG 330
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 27.3 bits (61), Expect = 7.0
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 37 AVSTTTESSSAAKFTPTHTVPSSN-TNRPDWNRAVSEAEKIVGYPTSFL 84
VST K + + D + V E+ IVG+P L
Sbjct: 67 GVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIIL 115
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 27.9 bits (63), Expect = 7.6
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 137 SKAAGHLNV-DEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNIT----PGLYSEP 191
+ L D+ + G L ++R + + E+I + GI G P
Sbjct: 308 TARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQA--KTDGIELAVEGKRVGNVLTP 365
Query: 192 VVLNDMTFGNKIA 204
V +KIA
Sbjct: 366 YVFVGADNNSKIA 378
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 27.5 bits (62), Expect = 8.0
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 60 NTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHL 101
N +W ++ A G + + + L +++AN L
Sbjct: 215 NEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWL 256
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: e.62.1.2
Length = 195
Score = 27.3 bits (60), Expect = 8.1
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 14/58 (24%)
Query: 134 LLISKAAGHLNVDEME--------------EDKAAGVLHSQRALAEVTEMIRTSHLVH 177
++ A V E D+ + + R E+ +++T +V
Sbjct: 39 GIVEAIAAKAEVAPAEILAILPQGAAVSAPADRFDAIWNEMRGWGEILMIVQTGDIVL 96
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 27.2 bits (61), Expect = 9.7
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 51 TP-THTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHL 101
T P E + + L + W+ ++++N L
Sbjct: 243 TEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWL 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.128 0.361
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,231,579
Number of extensions: 359404
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 67
Length of query: 438
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 342
Effective length of database: 4,021,377
Effective search space: 1375310934
Effective search space used: 1375310934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.6 bits)