RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11203
         (438 letters)



>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 291

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 42/315 (13%), Positives = 80/315 (25%), Gaps = 56/315 (17%)

Query: 129 WGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLY 188
              +    +            EDK          + EVTEM+  + L+   I + +    
Sbjct: 23  RTKLSQAFNHWLKV------PEDKLQ-------IIIEVTEMLHNASLLIDDIEDNSKLRR 69

Query: 189 SEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRD 248
             PV  +     + I   +  Y L           +   +                    
Sbjct: 70  GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL------------EL 117

Query: 249 LQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLK 308
            Q   L   +    T P +       L +      LA                       
Sbjct: 118 HQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVG--------------------- 156

Query: 309 LAGQDAELQEQGYQFGKHLALAWQACLDLEPFT--------SNYAPGTIFNLTSAPVMFH 360
           L    ++ +E        L L +Q   D             S     T    +   +   
Sbjct: 157 LMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 216

Query: 361 LEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFK 420
             + +S ++ N + + TE++     K   + +        T+   K+   +A K +    
Sbjct: 217 WSRPESTQVQNILRQRTENIDIK--KYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARG 274

Query: 421 ESDARTALSNIIVAM 435
            +    AL   +  M
Sbjct: 275 GNPELVALVKHLSKM 289


>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 347

 Score = 28.8 bits (64), Expect = 1.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 385 YKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKE 421
           Y+ V N+ S      L KQL++         +  F+E
Sbjct: 33  YQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFRE 69


>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 381

 Score = 27.6 bits (61), Expect = 3.2
 Identities = 8/108 (7%), Positives = 31/108 (28%), Gaps = 3/108 (2%)

Query: 212 LSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQI 271
           +     ++       L  L    + +        +   Q   +    +   +  D S   
Sbjct: 92  VCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALD 151

Query: 272 MESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQ 319
           + +     +   +  +      ++   +    +     A ++ E+++Q
Sbjct: 152 LRTKSTKQLAQNVTSFDVT---NSQLAVLLKDRSFQSFAWRNGEMEKQ 196


>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 120

 Score = 25.5 bits (56), Expect = 6.1
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 358 MFHLEQEKSDELLNEINKGTESVTNID----------------YKKVYN-IVSKGPGMRL 400
           + +  +  ++ L + +    E    ID                ++K +N +    P  + 
Sbjct: 23  VANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKY 82

Query: 401 TKQLQKQHSQQAMKVLQVFKESDARTA 427
           T Q+  +  +      +   +S  R  
Sbjct: 83  TAQVDAEEKEDVKSCAEFLTQSKTRIQ 109


>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens),
           s100a9 (mrp14) [TaxId: 9606]}
          Length = 83

 Score = 25.0 bits (55), Expect = 6.5
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 238 LTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDE 277
           L + EF   ++L    L         +      IME LD 
Sbjct: 29  LNQGEF---KELVRKDLQNFLKKENKNEKVIEHIMEDLDT 65


>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 115

 Score = 25.2 bits (55), Expect = 8.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 352 LTSAPVMFHLEQEKSDELLNEINK 375
           L +A + F+ E  K++ +  ++NK
Sbjct: 23  LQNAIIEFYTEYYKTNSINEKMNK 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,146
Number of extensions: 62825
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 7
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)