BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11204
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2
PE=2 SV=1
Length = 157
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 5/148 (3%)
Query: 7 FDEKGGVVKCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQG 66
F+E+ GVV C TPWG W+QTL+EVFIEV + R++DI + ++ + G+E+ +G
Sbjct: 5 FEERSGVVPCATPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKG 64
Query: 67 KLLDVVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMK 126
KL D DE WTLE+ ++ IVL K + + W SL + YA DP + +M+
Sbjct: 65 KLFDSTIADEGTWTLEDR-KMVRIVLTKTK-RDAANCWTSLL---ESEYAADPWVQDQMQ 119
Query: 127 KKMDLEKFQIENPGFDFSRAKLAKCYDK 154
+K+ LE+FQ ENPGFDFS A+++ Y K
Sbjct: 120 RKLTLERFQKENPGFDFSGAEISGNYTK 147
>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1
SV=1
Length = 157
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 93/148 (62%), Gaps = 5/148 (3%)
Query: 7 FDEKGGVVKCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQG 66
F+E+ GVV C TPWG W+QTL+EVFIEV + R++DI + ++ ++ G+E+ +G
Sbjct: 5 FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKG 64
Query: 67 KLLDVVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMK 126
KL D DE WTLE+ ++ IVL K + + W SL + YA DP + +M+
Sbjct: 65 KLFDSTIADEGTWTLEDR-KMVRIVLTKTK-RDAANCWTSLL---ESEYAADPWVQDQMQ 119
Query: 127 KKMDLEKFQIENPGFDFSRAKLAKCYDK 154
+K+ LE+FQ ENPGFDFS A+++ Y K
Sbjct: 120 RKLTLERFQKENPGFDFSGAEISGNYTK 147
>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1
SV=1
Length = 157
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 5/148 (3%)
Query: 7 FDEKGGVVKCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQG 66
F+E+ GVV C TPWG W+QTL+EVFIEV + R++DI + ++ + G+E+ +G
Sbjct: 5 FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKG 64
Query: 67 KLLDVVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMK 126
KL D DE WTLE+ ++ IVL K + + W SL + YA DP + +M+
Sbjct: 65 KLFDSTIADEGTWTLEDR-KMVRIVLTKTK-RDAANCWTSLL---ESEYAADPWVQDQMQ 119
Query: 127 KKMDLEKFQIENPGFDFSRAKLAKCYDK 154
+K+ LE+FQ ENPGFDFS A+++ Y K
Sbjct: 120 RKLTLERFQKENPGFDFSGAEISGNYTK 147
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 22 SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELF-QGKLLDVVHGDEIIWT 80
SW Q L EV I + + + +SR + + + + G++L G+ + V D+ W
Sbjct: 137 SWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFWN 196
Query: 81 LENNGTLLNIVLPKAE--------FKGKEQIWNSLF---------VNSKENYATDPTIFH 123
+E+ +++++L K + KG+ +I ++ + + + +F
Sbjct: 197 IEDQ-KMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255
Query: 124 EMKKKMD------------LEKFQIENPGFDFSRAKL 148
+ +K+M L+KF +NPG DFS AK
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKF 292
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 34/159 (21%)
Query: 22 SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCT--IAGKELFQGKLLDVVHGDEIIW 79
+W QTL++ + + L + V+S+D+ IK N ++ I + GKL V + W
Sbjct: 14 TWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNW 73
Query: 80 TLENNGTLLNIVLPK-----------------------------AEFKGKEQ-IWNSLFV 109
TLE +G L I L K ++F G+ + + +
Sbjct: 74 TLE-SGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLY 132
Query: 110 NSKENYATDPTIFHEMKKKMDLEKFQIENPGFDFSRAKL 148
N PT E K+++ E F+ E+P DFS AK
Sbjct: 133 NQNRKAQGLPTTDEEEKQRI-FETFKNEHPDMDFSNAKF 170
>sp|Q6PIP5|NUDC1_MOUSE NudC domain-containing protein 1 OS=Mus musculus GN=Nudcd1 PE=2
SV=2
Length = 582
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 19 PWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKLLDVVHGDEII 78
P W Q+ D++ + V L + DI I+ I+ + ++ +GKL + +
Sbjct: 275 PLYYWQQSEDDLTVTVRLPESSTKEDIQIQFLPDNINIKLKDIQVLEGKLYSSIDHEGST 334
Query: 79 WTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
WT++ N + L I L K K + +W L V K+
Sbjct: 335 WTIKENDS-LEISLIK---KNEGLMWPELVVGDKQ 365
>sp|P77744|ABGR_ECOLI HTH-type transcriptional regulator AbgR OS=Escherichia coli (strain
K12) GN=abgR PE=4 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 17 PTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKL-----LDV 71
PTP GS+++ L E +L D+ ++ + + C ++ K F KL D
Sbjct: 198 PTPHGSYYKQLSE-----LLDDQAQTPQVGVVCETFSACISLVAKSDFLSKLPEEMGCDP 252
Query: 72 VHGDEIIWTLENNGTLLNIVLPKAEF 97
+HG ++ + +LPKA +
Sbjct: 253 LHGQGLVMLPVSE------ILPKAAY 272
>sp|O06901|MALH_FUSMR Maltose-6'-phosphate glucosidase OS=Fusobacterium mortiferum
GN=malH PE=1 SV=1
Length = 441
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 73 HGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMKKKMDL- 131
G++++ L + + V+PK + + E WN F +K+ A DPT K L
Sbjct: 211 QGNDLMPKLREHVSQYGYVVPKGDNQHTEASWNDTFAKAKDVLALDPTTLPNTYLKYYLF 270
Query: 132 EKFQIENPGFDFSRA 146
+ +E+ +++RA
Sbjct: 271 PDYVVEHSNKEYTRA 285
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3
Length = 1848
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 100 KEQIWNSLFVNSKENYATDPTIFHEMKKKMDLEKFQIENPGFDFSRAKLAKCYDKVQDPP 159
KEQ+ N + SK+ +A + + MKK+++ E+ + +N ++S +L + YD ++D
Sbjct: 1031 KEQLNNQILCQSKDEFAQNSVKENLMKKELEEERSRYQNLVKEYS--QLEQRYDNLRDEM 1088
Query: 160 T 160
T
Sbjct: 1089 T 1089
>sp|Q96RS6|NUDC1_HUMAN NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1
SV=2
Length = 583
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 15 KCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKLLDVVHG 74
K P W QT D++ + + L + DI I+ I+ + + +GKL +
Sbjct: 272 KIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDH 331
Query: 75 DEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
+ W ++ + + L I L K K + W L + K+
Sbjct: 332 ESSTWIIKESNS-LEISLIK---KNEGLTWPELVIGDKQ 366
>sp|A8YVM4|SYGB_LACH4 Glycine--tRNA ligase beta subunit OS=Lactobacillus helveticus
(strain DPC 4571) GN=glyS PE=3 SV=1
Length = 687
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 63 LFQGKLLDVVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
L +L + H DE + + T +N +L KA+F GK + SLFV++ E
Sbjct: 564 LAAANVLQLHHDDEEFKPVVESLTRINNILKKAKFNGKVDVDESLFVDNSE 614
>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2
SV=1
Length = 586
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 19 PWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELF-QGKLLDVVHGDEI 77
P +W QT +EV + +L + D+ IK EI +I + F +G+L V +
Sbjct: 278 PLYNWQQTGEEVTLTFLLPEGKTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCESS 337
Query: 78 IWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKEN-YATDPTIFHEMKKKM 129
W ++ G + + L K E W L + K+ Y DP + +K+
Sbjct: 338 AWIMK-EGRGVEVTLTKRE---PGCTWAELVIADKQGEYIADPAQTAAIAEKL 386
>sp|Q60775|ELF1_MOUSE ETS-related transcription factor Elf-1 OS=Mus musculus GN=Elf1 PE=2
SV=1
Length = 612
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 73 HGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKEN 114
+GDE I T+E LLNI P ++QI N++F +S+++
Sbjct: 91 NGDETIETIEAAEALLNIDSPSPPVLDEKQINNNIFSSSEDD 132
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 61 KELFQGKLLDVVHGDEIIWTLENNGTLLNIVLPKA-EFKGKEQI------WNSLFVNSKE 113
K++FQG+LL ++ D + L N+ L K E K K WNSLF+N
Sbjct: 364 KQIFQGRLLHILPADAKKTHRLDEFDLKNLPLKKQRELKRKATAAQQTFSWNSLFMNQD- 422
Query: 114 NYATDPTIFHEMKKKMDLEKFQIENPGFDFSRAKLA 149
+ + K+ +EK Q+ +P S K A
Sbjct: 423 ------AVLSSVAAKLGMEKSQLIDPENSGSAVKQA 452
>sp|Q8R4U0|STAB2_MOUSE Stabilin-2 OS=Mus musculus GN=Stab2 PE=1 SV=1
Length = 2559
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 71 VVHGDEIIWTLENNG----TLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMK 126
VV G++++ +NG T+L A F +Q++ + + N ATD + H ++
Sbjct: 1211 VVLGEKLLRNDLHNGMHRETMLGFSYLLAFFLHNDQLYVNEAPINYTNVATDKGVIHGLE 1270
Query: 127 KKMDLEKFQIENPGFDFSRAKLAKCYDKVQDP 158
K ++++K + +N R K KC + P
Sbjct: 1271 KVLEIKKNRCDNNDTIIVRGKCGKCSQQTLCP 1302
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 61 KELFQGKLLDVVHGDEIIWTLENNGTLLNIVLPKA-EFKGKEQI------WNSLFVNSKE 113
K++FQG+LL ++ D+ + L N+ L K E K K Q WNSL++NS
Sbjct: 373 KQIFQGRLLHILPADKKKDHRLDEFDLKNLPLKKQRELKKKAQAAKTQFSWNSLYMNSD- 431
Query: 114 NYATDPTIFHEMKKKMDLEKFQIENPGFDFSRAKLA 149
+ + K+ + K Q+ +P S K A
Sbjct: 432 ------AVLESVASKLGVTKSQLIDPENSSSAVKQA 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,820,653
Number of Sequences: 539616
Number of extensions: 2693132
Number of successful extensions: 5752
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5732
Number of HSP's gapped (non-prelim): 26
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)