RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11204
(161 letters)
>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution)
C-like found in human NUDC domain-containing protein 2
(NUDCD2) and similar proteins. Little is known about
the function of the proteins in this subgroup.
Length = 93
Score = 83.3 bits (206), Expect = 1e-21
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 14 VKCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKLLDVVH 73
V C TPWG W+QT+DEVFIEV + R++D+ K + +IS + G+E+ +GKL D V
Sbjct: 1 VPCKTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVV 60
Query: 74 GDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
DE WTLE+ L+ IVL K+ + W SL
Sbjct: 61 ADECTWTLEDR-KLIRIVLTKSN-RDAGNCWKSL 92
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear
distribution) C and similar proteins. Aspergillus
nidulas (An) NUDC is needed for nuclear movement. AnNUDC
is localized at the hyphal cortex, and binds NUDF at
spindle pole bodies (SPBs) and in the cytoplasm at
different stages in the cell cycle. At the SPBs it is
part of the dynein molecular motor/NUDF complex that
regulates microtubule dynamics. Mammalian(m) NUDC
associates both with the dynein complex and also with an
anti-inflammatory enzyme, platelet activating factor
acetylhydrolase I, PAF-AH(I) complex, through binding
mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC
is important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation. This group also includes the human
broadly immunogenic tumor associated antigen, CML66,
which is highly expressed in a variety of solid tumors
and in leukemias. In normal tissues high expression of
CML66 is limited to testis and heart.
Length = 85
Score = 66.0 bits (162), Expect = 5e-15
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 22 SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE-LFQGKLLDVVHGDEIIWT 80
SW QTLDEV + + L + +S+D+ ++ T + + G E L G+L V DE WT
Sbjct: 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWT 61
Query: 81 LENNGTLLNIVLPKAEFKGKEQIWNSLF 108
LE+ L I L K + + W SL
Sbjct: 62 LEDGKL-LEITLEKRN---EGEWWPSLV 85
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 46.9 bits (112), Expect = 8e-08
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTI----AGKELFQGKLLDVVHGDEII 78
W+QTLDEV I + L D +D+ ++ T ++ ++ + L +G+L + +E
Sbjct: 1 WYQTLDEVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESK 59
Query: 79 WTLENNGTLLNIVLPKAEFKGKEQIWNSLF 108
WT+E + I L K E + W L
Sbjct: 60 WTVE--DRKIEITLKKKE---PGEWWPRLE 84
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought
to be indicative of an interaction between CS and
CHORD. It has been suggested that the CS domain is a
binding module for HSP90, implying that CS
domain-containing proteins are involved in recruiting
heat shock proteins to multiprotein assemblies.
Length = 78
Score = 46.4 bits (111), Expect = 1e-07
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 19 PWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE----LFQGKLLDVVHG 74
P W+QTLDEV I + L + +D+ ++ + +I G L G+L +
Sbjct: 1 PRYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDP 60
Query: 75 DEIIWTLENNGTLLNIVLPK 94
+E W +E T + I L K
Sbjct: 61 EESSWKIE--DTKVEITLKK 78
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 37.2 bits (87), Expect = 4e-04
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE-----------LFQGKLLDV 71
W+QT DEV + V L V+ DI ++ + ++ + +E +L +
Sbjct: 1 WYQTDDEVVVTVDLPG-VKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 72 VHGDEIIWTLENNGTLLNIVLPK 94
V ++ +LEN +L I LPK
Sbjct: 60 VDPEKSKASLENG--VLEITLPK 80
>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution)
C-like domain of mammalian(m) NUDC and similar
proteins. Mammalian(m) NUDC associates both with the
dynein complex and also with an anti-inflammatory
enzyme, platelet activating factor acetylhydrolase I,
PAF-AH(I) complex, through binding mNUDF, the
regulatory beta subunit of PAF-AH(I). mNUDC is
important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation.
Length = 87
Score = 30.8 bits (70), Expect = 0.084
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 22 SWWQTLDEVFIEVIL--TDKVRSRDIAIKCTNTEISCTIAGKE-LFQGKLLDVVHGDEII 78
W QTL EV ++V + +++ +D+ + + + G+ + G+L + V +E
Sbjct: 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESS 61
Query: 79 WTLENNGTLL 88
W +E+ +
Sbjct: 62 WLIEDGKVVT 71
>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear
distribution) C-like domain found in human NUD (nuclear
distribution) C domain-containing protein 1, NUDCD1
(also known as CML66), and similar proteins.
NUDCD1/CML66 is a broadly immunogenic tumor associated
antigen, which is highly expressed in a variety of
solid tumors and in leukemias. In normal tissues high
expression of NUDCD1/CML66 is limited to testis and
heart.
Length = 85
Score = 28.6 bits (64), Expect = 0.42
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGK-ELFQGKLLDVVHGDEIIWTL 81
W QT +++ + + L + DI IK IS + + L +GKL + + W +
Sbjct: 3 WQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWII 62
Query: 82 ENNGTL 87
+ N +L
Sbjct: 63 KENKSL 68
>gnl|CDD|219411 pfam07434, CblD, CblD like pilus biogenesis initiator. This family
consists of several minor pilin proteins including CblD
from Burkholderia cepacia which is known to CblD be the
initiator of pilus biogenesis. The family also contains
a variety of Enterobacterial minor pilin proteins.
Length = 360
Score = 29.4 bits (66), Expect = 0.78
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 24/141 (17%)
Query: 16 CPTPWGSWWQTLD-EVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKLLDVVHG 74
CPT S W E I++ T+K + + + + G + F +
Sbjct: 80 CPTTHLSGWYAFGGETNIKLQFTEKR---------SLAKRTLNLKGYKRFLCENDCCGSV 130
Query: 75 DEII-------WTLEN-NGTLLNIVLPKAEFKG--KEQIWNS-LFVNSKENYATDPTIFH 123
++ +G L + +P E W + L +N K P +
Sbjct: 131 IKMNLNSAACQCDTVGADGRSLKLYIPAGELNKLPTGGTWKATLVLNLKRWGDDTPLGTY 190
Query: 124 EMKKKMDL---EKFQIENPGF 141
+ +DL Q+ P F
Sbjct: 191 TVNITVDLTDKGNIQVWLPQF 211
>gnl|CDD|223795 COG0723, QcrA, Rieske Fe-S protein [Energy production and
conversion].
Length = 177
Score = 28.3 bits (63), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 5 SHFDEKGGVVKCPTP 19
S +D GGVVK P P
Sbjct: 133 SRYDPDGGVVKGPAP 147
>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a
guanine-nucleotide-exchange-factor (GEF) for the
pfam00025 family.
Length = 188
Score = 26.8 bits (60), Expect = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 123 HEMKKKMDLEKFQIEN-----PGFDFSRAKLAKCYDKVQ 156
+K KM E F I+N G DF L + YD ++
Sbjct: 147 PNVKNKMTKEDF-IKNLRGINDGKDFPEEFLEEIYDSIK 184
>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S. cerevisiae
SEC7 gene product. The Sec7 domain is the central domain
of the guanine-nucleotide-exchange factors (GEFs) of the
ADP-ribosylation factor family of small GTPases (ARFs) .
It carries the exchange factor activity.
Length = 185
Score = 26.4 bits (59), Expect = 6.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 123 HEMKKKMDLEKFQIEN-----PGFDFSRAKLAKCYDKVQD 157
+KKKM LE F I+N G DF R L + YD +++
Sbjct: 144 PNVKKKMTLEDF-IKNLRGINDGEDFPREFLKELYDSIKN 182
>gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins.
This ClC family presents in bacteria, where it
facilitates acid resistance in acidic soil. Mutation of
this gene (sycA) in Rhizobium tropici CIAT899 causes
serious deficiencies in nodule development, nodulation
competitiveness, and N2 fixation on Phaseolus vulgaris
plants, due to its reduced ability for acid resistance.
This family is part of the ClC chloride channel
superfamiy. These proteins catalyse the selective flow
of Cl- ions across cell membranes and Cl-/H+ exchange
transport. These proteins share two characteristics that
are apparently inherent to the entire ClC chloride
channel superfamily: a unique double-barreled
architecture and voltage-dependent gating mechanism. The
gating is conferred by the permeating anion itself,
acting as the gating charge.
Length = 378
Score = 26.4 bits (59), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 50 TNTEISCTIAGKELF 64
TNT ++C I G ELF
Sbjct: 338 TNTPLACIIMGIELF 352
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction
only].
Length = 1024
Score = 26.6 bits (59), Expect = 8.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 120 TIFH--EMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
T H +K KM E F + EN G DF L + YD ++
Sbjct: 406 TDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKE 451
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain. Domain named after the S.
cerevisiae SEC7 gene product, which is required for
proper protein transport through the Golgi. The domain
facilitates guanine nucleotide exchange on the small
GTPases, ARFs (ADP ribosylation factors).
Length = 189
Score = 26.1 bits (58), Expect = 9.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 117 TDPTIFHEMKKKMDLEKFQIEN-----PGFDFSRAKLAKCYDKVQD 157
TD +KKKM LE F I+N G D R L + YD +++
Sbjct: 143 TDLHN-PNVKKKMTLEDF-IKNVRGSNDGEDLPREFLEELYDSIKN 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,312,549
Number of extensions: 753276
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 21
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)