RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11204
(161 letters)
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 125 bits (315), Expect = 1e-37
Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 7 FDEKGGVVKCPTPWGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQG 66
F+E+ GVV C TPWG W+QTL+EVFIEV + R++DI + ++ + G+E+ +G
Sbjct: 2 FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKG 61
Query: 67 KLLDVVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMK 126
KL D DE WTLE+ + ++ + W SL + YA DP + +M+
Sbjct: 62 KLFDSTIADEGTWTLEDRKMVRIVL--TKTKRDAANCWTSLL---ESEYAADPWVQDQMQ 116
Query: 127 KKMDLEKFQIENPGFDFSRAKLAKCYDKVQ-DPPT 160
+K+ LE+FQ ENPGFDFS A+++ Y K D
Sbjct: 117 RKLTLERFQKENPGFDFSGAEISGNYTKGGPDFSN 151
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 66.8 bits (163), Expect = 5e-15
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 22 SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKELFQGKLLDVVHGDEIIWTL 81
+W Q L+E+ I+ +T S I I+ +I G+ + G+LL V + W +
Sbjct: 8 TWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEIVIDGELLHEVDVSSLWWVI 67
Query: 82 ENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
+ +N+ K + + W+SL V S+
Sbjct: 68 NGDVVDVNVT------KKRNEWWDSLLVGSES 93
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 63.8 bits (155), Expect = 6e-14
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 16 CPTPWGSWWQTLDEVFIEVILT--DKVRSRDIAIKCTNTEISCTIAGKE-LFQGKLLDVV 72
P W QTL E+ + V +++ +D+ + + + G+ + G+L + V
Sbjct: 5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEV 64
Query: 73 HGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMKKKMD 130
+E W +E +G ++ + L K K + WN L + E + + K+
Sbjct: 65 KVEESSWLIE-DGKVVTVHLEKIN---KMEWWNRLVTSDPEI---NTKKINPENSKLS 115
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 56.1 bits (135), Expect = 4e-11
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 16 CPTPWGSWWQTLDEVFIEVILTD--KVRSRDIAIKCTNTEISCTIAGKE-LFQGKLLDVV 72
P W QTL E+ + V +++ +D+ + + + G+ + G+L + V
Sbjct: 14 ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEV 73
Query: 73 HGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMKKKMDLE 132
+E W + +G ++ + L K K + W+ L +DP I + +
Sbjct: 74 KVEESSWLIA-DGAVVTVHLEKIN---KMEWWSRLVS-------SDPEI--------NTK 114
Query: 133 KFQIEN 138
K EN
Sbjct: 115 KINPEN 120
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 52.7 bits (126), Expect = 8e-10
Identities = 18/103 (17%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 16 CPTPWGSWWQTLDEVFIEVIL-TDKVRSRDIAIKCTNTEISCTIAGKE----LFQGKLLD 70
+W Q ++ + V + V+ + +++ +++ I + + L +GKL
Sbjct: 17 AVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTH 76
Query: 71 VVHGDEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
++ + +W+LE G + + L K E WN++ +
Sbjct: 77 KINTESSLWSLE-PGKCVLVNLSKVG----EYWWNAILEGEEP 114
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 33.0 bits (75), Expect = 0.012
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE----LFQGKLLDVVHGDEII 78
W+QT +V I +++ + V+ D+ ++ + E+S + + +LL + ++
Sbjct: 14 WYQTESQVVITLMIKN-VQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQST 72
Query: 79 WTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
+ + T + I L K E W L
Sbjct: 73 FKVL--STKIEIKLKKPE----AVRWEKL 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.11
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 35/156 (22%)
Query: 3 KLSHFDEKGGVVKCPTP-WGSWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGK 61
+LS F PT W + + + V++ + ++ E + +I
Sbjct: 377 RLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI--- 428
Query: 62 ELFQGKLLDVVHG--DEIIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDP 119
E+ LEN L ++ + L + Y
Sbjct: 429 -----------PSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQY---- 472
Query: 120 TIF----HEMKKKMDLEKFQIENP---GFDFSRAKL 148
+ H +K E+ + F F K+
Sbjct: 473 -FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 29.8 bits (67), Expect = 0.13
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE----LFQGKLLDVVHGDEII 78
++Q +EV + + + +++ I +S I Q +L + D+
Sbjct: 7 YYQKPEEVVV-TVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCK 65
Query: 79 WTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
+ + T + I L KA+ W SL
Sbjct: 66 YEVL--STKIEICLAKAD----IITWASL 88
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A
{Chloroflexus aurantiacus}
Length = 139
Score = 28.3 bits (62), Expect = 0.74
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 2/85 (2%)
Query: 64 FQGKLLDVVHGDEIIWTLENNGTLL--NIVLPKAEFKGKEQIWNSLFVNSKENYATDPTI 121
F L V G + +NN + N +L K I N+
Sbjct: 32 FDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK 91
Query: 122 FHEMKKKMDLEKFQIENPGFDFSRA 146
+ + + + F A
Sbjct: 92 SNIIAESPLANGNETVEVTFTAPAA 116
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha,
guanine-nucleotide releasing factor, signaling PR; 2.20A
{Homo sapiens} PDB: 3l8n_A 3swv_A
Length = 211
Score = 28.6 bits (64), Expect = 0.77
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 123 HEMKKKMDLEKFQI----ENPGFDFSRAKLAKCYDKVQDPP 159
++K KM E++ N D L+ Y+++
Sbjct: 161 PQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine
nucleotide exchange factor (GEF), ARF small GTP-binding
proteins; 1.93A {Saccharomyces cerevisiae} SCOP:
a.118.3.1 PDB: 1re0_B*
Length = 230
Score = 28.6 bits (64), Expect = 0.79
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 123 HEMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
++K+ M E + + DF L + Y ++D
Sbjct: 179 PQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKE 219
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper
protein, azurin-L thermophIle; 1.55A {Chloroflexus
aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Length = 140
Score = 28.0 bits (61), Expect = 0.98
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 3/86 (3%)
Query: 64 FQGKLLDVVHGDEIIWTLENNGTLL---NIVLPKAEFKGKEQIWNSLFVNSKENYATDPT 120
F L + + N L N VL + + N+ + P
Sbjct: 30 FAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPD 89
Query: 121 IFHEMKKKMDLEKFQIENPGFDFSRA 146
+ + L + + F
Sbjct: 90 TPNALAWTAMLNAGESGSVTFRTPAP 115
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 27.6 bits (61), Expect = 1.0
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 23 WWQTLDEVFIEVILTDKVRSRDIAIKCTNTEI--SCTIAGKE---LFQGKLLDVVHGDEI 77
W+ D VFIE + D S+D+ + +++ SC L + L + ++
Sbjct: 8 WYDRRDYVFIEFCVED---SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDS 64
Query: 78 IWTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
+ L K E Q W L
Sbjct: 65 KHK--RTDRSILCCLRKGE---SGQSWPRL 89
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang
complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1
PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Length = 203
Score = 27.4 bits (61), Expect = 1.8
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 123 HEMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
++ KM LE+F + N G D L YD +++ P
Sbjct: 153 PNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEP 193
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 27.3 bits (60), Expect = 2.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 123 HEMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
H ++ K E+F + N G D L Y+ +++ P
Sbjct: 155 HNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEP 195
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, MOCO DE
translation; 2.00A {Escherichia coli} SCOP: d.58.21.1
PDB: 1eks_A*
Length = 161
Score = 26.4 bits (59), Expect = 3.7
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 1 MPKLSHFDEKG 11
M +L+H + G
Sbjct: 1 MAQLTHINAAG 11
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis,
structural genomics; 1.94A {Geobacillus kaustophilus}
Length = 162
Score = 26.4 bits (59), Expect = 4.0
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 1 MPKLSHFDEKG 11
M +HF+E+G
Sbjct: 1 MSSFTHFNEQG 11
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural
genomic NPPSFA, national project on protein structural
and function analyses; HET: FLC; 2.05A {Pyrococcus
horikoshii}
Length = 159
Score = 25.6 bits (57), Expect = 6.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 MPKLSHFDEKG 11
+ L+H DEKG
Sbjct: 2 VGGLTHVDEKG 12
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
exchange factor, signaling protein; 1.41A {Legionella
pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Length = 356
Score = 26.2 bits (57), Expect = 6.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 126 KKKMDLEKFQI----ENPGFDFSRAKLAKCYDKVQDPP 159
K KM ++ + N G DF L + Y +++ P
Sbjct: 156 KNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKP 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,586,949
Number of extensions: 144184
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 24
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)