RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11204
         (161 letters)



>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 131

 Score = 57.6 bits (139), Expect = 5e-12
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 22  SWWQTLDEVFIEVIL--TDKVRSRDIAIKCTNTEISCTIAGKE-LFQGKLLDVVHGDEII 78
            W QTL E+ + V    + +++ +D+ +      +   + G+  +  G+L + V  +E  
Sbjct: 11  RWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESS 70

Query: 79  WTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKENYATDPTIFHEMKKKMD 130
           W +E+   +  + L K     K + WN L  +  E    +    +    K+ 
Sbjct: 71  WLIEDGKVVT-VHLEKIN---KMEWWNRLVTSDPEI---NTKKINPENSKLS 115


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
           (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 49.2 bits (117), Expect = 7e-09
 Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 22  SWWQTLDEVFIEVILTDK-VRSRDIAIKCTNTEISCTIAGKE----LFQGKLLDVVHGDE 76
           +W Q   ++ + V +    V+ + +++  +++ I   +  +     L +GKL   ++ + 
Sbjct: 23  TWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES 82

Query: 77  IIWTLENNGTLLNIVLPKAEFKGKEQIWNSLFVNSKE 113
            +W+LE    +L + L K      E  WN++    + 
Sbjct: 83  SLWSLEPGKCVL-VNLSKVG----EYWWNAILEGEEP 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 22  SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE----LFQGKLLDVVHGDEI 77
            W+QT  +V I +++ + V+  D+ ++ +  E+S  +          + +LL  +  ++ 
Sbjct: 6   DWYQTESQVVITLMIKN-VQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQS 64

Query: 78  IWTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
            + + +    + I L K E       W  L
Sbjct: 65  TFKVLSTK--IEIKLKKPE----AVRWEKL 88


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 32.3 bits (73), Expect = 0.007
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 22  SWWQTLDEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKE---LFQGKLLDVVHGDEII 78
            W+   D VFIE  + D  +  ++  + +    SC         L +  L   +  ++  
Sbjct: 7   KWYDRRDYVFIEFCVED-SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSK 65

Query: 79  WTLENNGTLLNIVLPKAEFKGKEQIWNSL 107
               +    +   L K E     Q W  L
Sbjct: 66  HKRTDRS--ILCCLRKGE---SGQSWPRL 89


>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 211

 Score = 28.3 bits (63), Expect = 0.37
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 123 HEMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
            ++K+ M  E +    +      DF    L + Y  ++D  
Sbjct: 167 PQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKE 207


>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 187

 Score = 26.7 bits (59), Expect = 1.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 123 HEMKKKMDLEKF----QIENPGFDFSRAKLAKCYDKVQDPP 159
             ++ KM LE+F    +  N G D     L   YD +++ P
Sbjct: 141 PNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEP 181


>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
          (Mamestra brassicae) [TaxId: 55057]}
          Length = 101

 Score = 25.0 bits (55), Expect = 2.4
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 28 DEVFIEVILTDKVRSRDIAIKCTNTEISCTIAGKEL 63
          D + ++ IL +K R     + C      C+  GKEL
Sbjct: 7  DNINLDEILANK-RLLVAYVNCVMERGKCSPEGKEL 41


>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
           10665]}
          Length = 282

 Score = 25.2 bits (54), Expect = 4.0
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)

Query: 117 TDPTIFHEMKKKMDLEKFQIENPGFDFSRA 146
            + + FHE++     + F  E  G+ F+  
Sbjct: 17  CEESTFHELR-----DFFSFEADGYRFNPR 41


>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 180

 Score = 24.3 bits (52), Expect = 6.7
 Identities = 5/23 (21%), Positives = 7/23 (30%)

Query: 64 FQGKLLDVVHGDEIIWTLENNGT 86
            G  L    GD +    +N   
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKAH 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,565
Number of extensions: 29560
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 15
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)