BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11205
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QIJ|C Chain C, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|D Chain D, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|B Chain B, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|A Chain A, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data
Length = 157
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 30 DGREDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIP---DDRANRDFRVKFPDDVMQ 83
D E PE C+ LRQ C +++ + W+ +D A+RD V + + +
Sbjct: 49 DALESPEHCSPHHTALRQAILCWGDLMTLAT-----WVGTNLEDPASRDLVVSYVNTNVG 103
Query: 84 DNLAGQLWFGAECLAAG 100
LWF CL G
Sbjct: 104 LKFRQLLWFHISCLTFG 120
>pdb|1QGT|C Chain C, Human Hepatitis B Viral Capsid (Hbcag)
pdb|1QGT|D Chain D, Human Hepatitis B Viral Capsid (Hbcag)
pdb|1QGT|B Chain B, Human Hepatitis B Viral Capsid (Hbcag)
pdb|1QGT|A Chain A, Human Hepatitis B Viral Capsid (Hbcag)
Length = 149
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 33 EDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQ 89
E PE C+ LRQ C ++ + + + +D A+RD V + + M +
Sbjct: 43 ESPEHCSPHHTALRQAILCWGELMTLATWVGNNL--EDPASRDLVVNYVNTNMGLKIRQL 100
Query: 90 LWFGAECLAAG 100
LWF CL G
Sbjct: 101 LWFHISCLTFG 111
>pdb|3KXS|F Chain F, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|E Chain E, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|C Chain C, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|D Chain D, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|A Chain A, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|B Chain B, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
Length = 143
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 30 DGREDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIP---DDRANRDFRVKFPDDVMQ 83
D E PE C+ LRQ C +++ + W+ +D A+RD V + + +
Sbjct: 40 DALESPEHCSPHHTALRQAILCWGDLMTLAT-----WVGTNLEDPASRDLVVSYVNTNVG 94
Query: 84 DNLAGQLWFGAECLAAG 100
LWF CL G
Sbjct: 95 LKFRQLLWFHISCLTFG 111
>pdb|1OUT|B Chain B, Trout Hemoglobin I
pdb|1OUU|B Chain B, Carbonmonoxy Trout Hemoglobin I
pdb|1OUU|D Chain D, Carbonmonoxy Trout Hemoglobin I
Length = 146
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 89 QLWFGA-ECLAAGSSIMNREAESAAMRPLAKALTKSLENVRNLLREY-SLRSTHPSDIFF 146
Q +FG+ ++ ++IM +A + + AL K+++N+ N+L Y SL TH + +F
Sbjct: 39 QRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANKLFV 98
Query: 147 TDD 149
D
Sbjct: 99 DPD 101
>pdb|2X54|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 372
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 80 DVMQDNLAGQLWFGAECLAAGSSIMNREAESAAMRPLAKALTKSLENVRNLLREYSLRST 139
D ++NL +F + AG + +NR+AE+++ +AK + ++ +++ T
Sbjct: 139 DPNKNNLMSYGYFFNSSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQHAPSET 198
Query: 140 HPSDIFFTD 148
P ++ F +
Sbjct: 199 DPRNLLFIN 207
>pdb|2X53|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|1 Chain 1, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 375
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 80 DVMQDNLAGQLWFGAECLAAGSSIMNREAESAAMRPLAKALTKSLENVRNLLREYSLRST 139
D ++NL +F + AG + +NR+AE+++ +AK + ++ +++ T
Sbjct: 139 DPNKNNLMSYGYFFNSSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQHAPSET 198
Query: 140 HPSDIFFTD 148
P ++ F +
Sbjct: 199 DPRNLLFIN 207
>pdb|2WZP|R Chain R, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 375
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 80 DVMQDNLAGQLWFGAECLAAGSSIMNREAESAAMRPLAKALTKSLENVRNLLREYSLRST 139
D ++NL +F + AG + +NR+AE+++ +AK + ++ +++ T
Sbjct: 139 DPNKNNLMSYGYFFNSSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQHAPSET 198
Query: 140 HPSDIFFTD 148
P ++ F +
Sbjct: 199 DPRNLLFIN 207
>pdb|2QS7|A Chain A, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|B Chain B, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|C Chain C, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|D Chain D, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
Length = 144
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 185 EYEMQQLVMVLFSETLQRALRVGLL-SQEMIEAYEPSLMFTIPRLAIVTGLLVYPSGPLS 243
E + ++L +++FS T+ + VG+L S YE +L FT L +T + P
Sbjct: 4 EEKKKKLSIIVFSGTIDKLXPVGILTSGAAASGYEVNLFFTFWGLQAITKRSLNSQQPPQ 63
Query: 244 LDK 246
+DK
Sbjct: 64 IDK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,007,428
Number of Sequences: 62578
Number of extensions: 298171
Number of successful extensions: 748
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 9
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)