Query psy11205
Match_columns 315
No_of_seqs 37 out of 39
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:50:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hw4_A Induced myeloid leukemi 58.9 13 0.00043 31.6 5.0 102 13-134 37-139 (157)
2 2db7_A Hairy/enhancer-OF-split 55.9 20 0.00068 26.7 5.0 45 5-50 11-60 (64)
3 1rxq_A YFIT; nickel-binding, h 50.4 25 0.00087 27.6 5.2 44 235-278 6-51 (178)
4 3pk1_A Induced myeloid leukemi 42.8 21 0.00073 31.4 3.9 100 15-134 72-172 (189)
5 3mxn_A RECQ-mediated genome in 27.8 39 0.0013 29.4 3.0 35 23-59 90-124 (157)
6 3r9m_A BRO1 domain-containing 26.5 1.3E+02 0.0045 28.1 6.7 47 115-171 29-75 (376)
7 4aq3_A Apoptosis regulator BCL 24.6 35 0.0012 29.2 2.2 46 17-66 57-102 (169)
8 2nl9_A Fusion protein consisti 23.1 62 0.0021 26.8 3.4 33 89-125 97-129 (157)
9 3uxj_A NADPH-dependent 7-cyano 19.4 22 0.00075 33.7 -0.2 24 213-236 30-53 (290)
10 2y6w_A BCL-2-like protein 2; a 17.5 1.1E+02 0.0038 26.1 3.8 93 17-134 57-154 (177)
No 1
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=58.94 E-value=13 Score=31.59 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccCChhhhhhccccchHH
Q psy11205 13 FYADEALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWF 92 (315)
Q Consensus 13 y~ADe~l~~v~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e~ip~~Ra~RdfrvKFPeev~~dnl~g~lwF 92 (315)
-.+=+.|..++.||.. +.+.....+++||+..-++-...+.++|++.+.+.--+ =.+.-+-+-|
T Consensus 37 ~~~~~~Lr~vgdele~----~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~N------------WGRIVaLfaF 100 (157)
T 4hw4_A 37 RKALETLRRVGDGVQR----NHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTN------------WGRIVTLISF 100 (157)
T ss_dssp HHHHHHHHHHHHHHHH----HTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCcc------------HHHHHHHHHH
Confidence 3445678889999988 78889999999998877777777888888887653211 1233344567
Q ss_pred HHHHhhccCcccchhhhhhhccHHHHHHHHHHH-HHHHHHHHH
Q psy11205 93 GAECLAAGSSIMNREAESAAMRPLAKALTKSLE-NVRNLLREY 134 (315)
Q Consensus 93 gAEcLaAGs~I~n~E~es~~lRPLA~~L~~SLe-~vR~~Lr~q 134 (315)
|+-.... +.-.++| ..++++|..++.-|. .+++-++++
T Consensus 101 gg~la~~-~~~~~~~---~~v~~l~~~i~~~l~~~l~~WI~~~ 139 (157)
T 4hw4_A 101 GAFVAKH-LKTINQE---SCIEPLAESITDVLVRTKRDWLVKQ 139 (157)
T ss_dssp HHHHHHH-HHHTTCG---GGHHHHHHHHHHHHHTTTHHHHHHT
T ss_pred HHHHHHH-HHHcCch---hHHHHHHHHHHHHHHhhHHHHHHHC
Confidence 7653322 2112222 466888988887775 444444443
No 2
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=55.93 E-value=20 Score=26.72 Aligned_cols=45 Identities=31% Similarity=0.334 Sum_probs=32.0
Q ss_pred chhHHHHHhhh---hHHHHHHHHHhhhcCCCCChh--HHHHHHHHHHHHHH
Q psy11205 5 DQSLLAQFFYA---DEALTFVAAELDSFDGREDPE--RCTALVNHLRQCQD 50 (315)
Q Consensus 5 D~~lLAqFy~A---De~l~~v~~ELds~Dgr~dp~--rc~~LvnqLr~~Qd 50 (315)
|++-++.=|++ -|=++.|++=|.+.+| -||+ .+..|+++|+.|..
T Consensus 11 d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg-~d~~d~~r~rLl~HL~~~~~ 60 (64)
T 2db7_A 11 DAHALAMDYRSLGFRECLAEVARYLSIIEG-LDASDPLRVRLVSHLNNYAS 60 (64)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHTSC-CCTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHhh
Confidence 55666655663 4556667777777677 5665 99999999998864
No 3
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=50.38 E-value=25 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCCc--hhhhhhchhhHHHHHHHHHHHhhcCHHHHH
Q psy11205 235 LVYPSGPLSLDKEP--SEMSEMFRPFRTLLGKIREVLWRLNEDEIA 278 (315)
Q Consensus 235 li~pdGpln~d~~~--~~~s~mFrpf~~lL~kIr~lL~~Ls~~EL~ 278 (315)
+-||=||+.+.++. +++..+..-+...-.+++++|..||++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~l~~L~~e~l~ 51 (178)
T 1rxq_A 6 LSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEVMTDSQLD 51 (178)
T ss_dssp CSCTTCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 34899999988766 666667778888888899999999999864
No 4
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=42.84 E-value=21 Score=31.35 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccCChhhhhhccccchHHHH
Q psy11205 15 ADEALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWFGA 94 (315)
Q Consensus 15 ADe~l~~v~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e~ip~~Ra~RdfrvKFPeev~~dnl~g~lwFgA 94 (315)
+=+.|..++.||.. +-+.....+++||+..-.+-...+.++|++++.+.--+ =.+.-+-+-||+
T Consensus 72 ~~~~Lr~vgdEle~----~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGi~N------------WGRIVaLfaFgg 135 (189)
T 3pk1_A 72 ALETLRRVGDGVQR----NHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTN------------WGRIVTLISFGA 135 (189)
T ss_dssp HHHHHHHHHHHHHH----HTHHHHHHHHHHHTCCSTTCCHHHHHHHHHHTTTSCCC------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCcc------------HHHHHHHHHHHH
Confidence 33566777777776 66777888888887655555555667777666543211 122333455776
Q ss_pred HHhhccCcccchhhhhhhccHHHHHHHHHHH-HHHHHHHHH
Q psy11205 95 ECLAAGSSIMNREAESAAMRPLAKALTKSLE-NVRNLLREY 134 (315)
Q Consensus 95 EcLaAGs~I~n~E~es~~lRPLA~~L~~SLe-~vR~~Lr~q 134 (315)
-.... +.-.++| ..++++|..++.-|. .++.-++++
T Consensus 136 ~La~~-~~~~~~~---~~v~~l~e~i~~fL~~~l~~WI~~~ 172 (189)
T 3pk1_A 136 FVAKH-LKTINQE---SCIEPLAESITDVLVRTKRDWLVKQ 172 (189)
T ss_dssp HHHHH-HHHHCTT---CCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHccch---hHHHHHHHHHHHHHHhhHHHHHHHC
Confidence 53322 2112222 467889998887775 444444443
No 5
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=27.78 E-value=39 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.618 Sum_probs=28.2
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11205 23 AAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKI 59 (315)
Q Consensus 23 ~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~i 59 (315)
+.|+.+. ++||++...|..-|++||+.+.+++--|
T Consensus 90 ~~E~~~l--kkdp~~~~~l~e~L~~~Q~~L~dl~clM 124 (157)
T 3mxn_A 90 VPEMKQS--KKDPLQYQKFLEGLQKCQRDLIDLCCLM 124 (157)
T ss_dssp HHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_pred HHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhhccEE
Confidence 4566664 6999999999999999999988765433
No 6
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=26.52 E-value=1.3e+02 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccHHHHHHHHHHHHhhhhhhhh
Q psy11205 115 PLAKALTKSLENVRNLLREYSLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFEL 171 (315)
Q Consensus 115 PLA~~L~~SLe~vR~~Lr~qsL~~p~~~~~~~~~~~y~~~l~~~L~~FD~lfaEFEl 171 (315)
|.+..+++-|...|+.|++. +++|. ...+.++++|..+-....-|..
T Consensus 29 ~~~~~~~~~l~~~R~~l~~~-~~~~~---------~~~~~~~~~l~~Yl~~L~~l~~ 75 (376)
T 3r9m_A 29 PSASKICNDLRSSRARLLEL-FTDLS---------CNPEMMKNAADSYFSLLQGFIN 75 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCTT---------CCHHHHHHHHHHHHHHHGGGTB
T ss_pred chHHHHHHHHHHHHHHHHHH-HhcCC---------CCHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999999 88887 6678888999888877766643
No 7
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=24.65 E-value=35 Score=29.21 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11205 17 EALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDVWIPD 66 (315)
Q Consensus 17 e~l~~v~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e~ip~ 66 (315)
+.|..++.||.+ +.|.....+++||+...+.....+.++|++.+.+
T Consensus 57 ~~Lr~igdele~----~~~~~f~~~~~~L~it~~~a~~~F~~Va~elF~d 102 (169)
T 4aq3_A 57 LALRQAGDDFSR----RYRGDFAEMSSQLHLTPFTARGRFATVVEELFRD 102 (169)
T ss_dssp HHHHHHHHHHHH----HTHHHHHHHHHHCCCCTTTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH----HhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Confidence 467788888888 6888999999999877778888888888888775
No 8
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=23.07 E-value=62 Score=26.83 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=17.4
Q ss_pred chHHHHHHhhccCcccchhhhhhhccHHHHHHHHHHH
Q psy11205 89 QLWFGAECLAAGSSIMNREAESAAMRPLAKALTKSLE 125 (315)
Q Consensus 89 ~lwFgAEcLaAGs~I~n~E~es~~lRPLA~~L~~SLe 125 (315)
-+-||+-+... +.-.++| ..+++++..+++-|.
T Consensus 97 lf~F~~~la~~-~~~~~~~---~~v~~i~~~~~~~l~ 129 (157)
T 2nl9_A 97 LISFGAFVAKH-LKTINQE---SCIEPLAESITDVLV 129 (157)
T ss_dssp HHHHHHHHHHH-HHHHCTT---CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHcCch---hHHHHHHHHHHHHHH
Confidence 34577754322 2222222 356788888777763
No 9
>3uxj_A NADPH-dependent 7-cyano-7-deazaguanine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE PRF NAP; 1.40A {Vibrio cholerae o1 biovar el tor} PDB: 3s19_A* 3rjb_A* 3bp1_A* 3uxv_A* 3rzp_A* 3rj4_A* 3rzq_A* 4ghm_A*
Probab=19.43 E-value=22 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=17.8
Q ss_pred hhhhcCCcchhhhhhHHHHhhccc
Q psy11205 213 MIEAYEPSLMFTIPRLAIVTGLLV 236 (315)
Q Consensus 213 ~Id~ydP~lMftIPRLAIv~GLli 236 (315)
=.+.|||.++|.|||-.==..+-+
T Consensus 30 Y~~~Ydp~LL~pIpR~~~R~~lgi 53 (290)
T 3uxj_A 30 YANQYDPSLLQPVPRSLNRNDLHL 53 (290)
T ss_dssp CCCCCCGGGCCEEEHHHHHHHTTC
T ss_pred CccccChhhcccCCCccchhhcCC
Confidence 357899999999999765444333
No 10
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=17.45 E-value=1.1e+02 Score=26.08 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccCChhhhhhccccchHHHHH-
Q psy11205 17 EALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWFGAE- 95 (315)
Q Consensus 17 e~l~~v~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e~ip~~Ra~RdfrvKFPeev~~dnl~g~lwFgAE- 95 (315)
+.|..++.||.. +.+.....+.+||...-+.....+.++|++++-+. -+ =.+.-+-+-||+-
T Consensus 57 ~~Lr~~gdele~----~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dG-in------------WGRIVaLfaF~g~L 119 (177)
T 2y6w_A 57 QAMRAAGDEFET----RFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGG-PN------------WGRLVAFFVFGAAL 119 (177)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHCC-CH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-CC------------HHHHHHHHHHHHHH
Confidence 456677778876 56777888999998888888888888988887542 12 1222233445543
Q ss_pred ---HhhccCcccchhhhhhhccHHHHHHHHHHH-HHHHHHHHH
Q psy11205 96 ---CLAAGSSIMNREAESAAMRPLAKALTKSLE-NVRNLLREY 134 (315)
Q Consensus 96 ---cLaAGs~I~n~E~es~~lRPLA~~L~~SLe-~vR~~Lr~q 134 (315)
|...|. +..++.++.-+++-|. .++.-++++
T Consensus 120 a~~~~~~~~--------~~~v~~I~~~~~~yl~~~l~~WI~~~ 154 (177)
T 2y6w_A 120 CAESVNKEM--------EPLVGQVQEWMVEYLETRLADWIHSS 154 (177)
T ss_dssp HHHHHHTTC--------THHHHHHHHHHHHHHHTTTHHHHHHT
T ss_pred HHHHHHcCC--------hHHHHHHHHHHHHHHHhhHHHHHHHC
Confidence 444331 2346777777777764 555555554
Done!