Query psy11205
Match_columns 315
No_of_seqs 37 out of 39
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 20:50:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11205.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11205hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2db7a1 a.273.1.1 (A:3-57) Hai 59.0 8.1 0.00059 26.8 5.0 43 5-48 4-51 (55)
2 d1wg8a1 a.60.13.1 (A:109-206) 37.5 13 0.00098 27.6 3.6 17 232-248 1-17 (98)
3 d2gf5a2 a.77.1.4 (A:2-83) FADD 23.5 23 0.0017 24.9 2.6 29 256-288 1-29 (82)
4 d1vi0a2 a.121.1.1 (A:78-194) H 20.5 1.2E+02 0.0086 20.4 8.3 88 11-110 15-104 (117)
5 d1vi0a2 a.121.1.1 (A:78-194) H 19.8 36 0.0026 23.3 3.0 62 189-255 46-110 (117)
6 d1m6ya1 a.60.13.1 (A:115-215) 19.7 42 0.003 24.6 3.5 37 232-280 2-39 (101)
7 d2hf5a1 a.39.1.5 (A:81-113) Tr 18.8 21 0.0015 22.0 1.3 13 152-164 2-14 (33)
8 d2a0ba_ a.24.10.1 (A:) Aerobic 16.9 1.5E+02 0.011 20.5 6.0 46 17-62 71-116 (118)
9 d1au1a_ a.26.1.3 (A:) Interfer 14.6 2.7E+02 0.019 21.9 7.7 131 38-171 3-145 (166)
10 d1rxqa_ a.213.1.1 (A:) YfiT {B 14.4 1.2E+02 0.0089 22.1 5.1 44 235-278 2-47 (174)
No 1
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.98 E-value=8.1 Score=26.80 Aligned_cols=43 Identities=33% Similarity=0.347 Sum_probs=33.0
Q ss_pred chhHHHHHhhh---hHHHHHHHHHhhhcCCCCChh--HHHHHHHHHHHH
Q psy11205 5 DQSLLAQFFYA---DEALTFVAAELDSFDGREDPE--RCTALVNHLRQC 48 (315)
Q Consensus 5 D~~lLAqFy~A---De~l~~v~~ELds~Dgr~dp~--rc~~LvnqLr~~ 48 (315)
|++-||-=|+| .|=.+.|++=|.+.+| -||+ --++|+++|..|
T Consensus 4 D~~~la~~yra~GF~ECa~EV~RyL~~~eg-~d~~d~~r~RLl~HL~~C 51 (55)
T d2db7a1 4 DAHALAMDYRSLGFRECLAEVARYLSIIEG-LDASDPLRVRLVSHLNNY 51 (55)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHTSC-CCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccHHHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHH
Confidence 77888866777 6777888888888888 3333 667899999887
No 2
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}
Probab=37.49 E-value=13 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.1
Q ss_pred hhcccCCCCCCCCCCCc
Q psy11205 232 TGLLVYPSGPLSLDKEP 248 (315)
Q Consensus 232 ~GLli~pdGpln~d~~~ 248 (315)
.|.....+|||.+..++
T Consensus 1 RGFSf~~~gpLDMRmd~ 17 (98)
T d1wg8a1 1 RGFSYQKEGPLDMRMGL 17 (98)
T ss_dssp GCCCSSSCCBSCCCSSS
T ss_pred CCCCcCCCCCCCCCCCC
Confidence 48888999999988665
No 3
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.54 E-value=23 Score=24.85 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHHHHHhccCC
Q psy11205 256 RPFRTLLGKIREVLWRLNEDEIARLERLLCSVD 288 (315)
Q Consensus 256 rpf~~lL~kIr~lL~~Ls~~EL~~LEr~LC~~e 288 (315)
.|||.+|.+|.+- |+.+|+..+ |-||...
T Consensus 1 ~Pfr~lL~~Is~~---L~~~dl~~l-Kfl~~d~ 29 (82)
T d2gf5a2 1 DPFLVLLHSVSSS---LSSSELTEL-KYLCLGR 29 (82)
T ss_dssp CHHHHHHHHHHTT---SCHHHHHHH-HHHTTTT
T ss_pred ChHHHHHHHHHHh---cCHHHHHHH-HHHHHhh
Confidence 3999999999974 599999988 5788753
No 4
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=20.55 E-value=1.2e+02 Score=20.41 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHhhhhHHHHHHH-HHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccCChhhhhhccccc
Q psy11205 11 QFFYADEALTFVA-AELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQ 89 (315)
Q Consensus 11 qFy~ADe~l~~v~-~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e~ip~~Ra~RdfrvKFPeev~~dnl~g~ 89 (315)
+||..|..+-.|. .|+.+ .+|+.-..+.+..+.-...+-+||++- ...-.||-..|-.+...-+-|.
T Consensus 15 ~~~~~~~~~~~i~~~E~~~----~~~~~~~~i~~~~~~~~~~~~~ii~~g--------~~~G~ir~d~d~~~~a~~i~g~ 82 (117)
T d1vi0a2 15 SLLAGDHNLAIVTQLELRQ----SNLELRQKINEILKGYLNILDGILTEG--------IQSGEIKEGLDVRLARQMIFGT 82 (117)
T ss_dssp HHHHTCHHHHHHHHTTTCC----CSHHHHHHHHHHHHHHHHHHHHHHHHH--------HHTTCBCTTCCHHHHHHHHHHH
T ss_pred HHHHhCcchHHhHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCcccCCCHHHHHHHHHHH
Confidence 4677788887764 46654 455655555555555555555555444 4445566556667777777776
Q ss_pred h-HHHHHHhhccCcccchhhhh
Q psy11205 90 L-WFGAECLAAGSSIMNREAES 110 (315)
Q Consensus 90 l-wFgAEcLaAGs~I~n~E~es 110 (315)
+ |.+-..+..|....-.+...
T Consensus 83 i~~~~~~w~~~~~~~~~~~~~~ 104 (117)
T d1vi0a2 83 IDETVTTWVMNDQKYDLVALSN 104 (117)
T ss_dssp HHHHHHHHHHTTTCSCGGGGHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHH
Confidence 5 44556666666655444433
No 5
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=19.76 E-value=36 Score=23.34 Aligned_cols=62 Identities=8% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCccHHhhhhcCCcchhhhhhHHHHhhccc---CCCCCCCCCCCchhhhhhc
Q psy11205 189 QQLVMVLFSETLQRALRVGLLSQEMIEAYEPSLMFTIPRLAIVTGLLV---YPSGPLSLDKEPSEMSEMF 255 (315)
Q Consensus 189 Qq~v~VLf~ETl~RAl~~glltqe~Id~ydP~lMftIPRLAIv~GLli---~pdGpln~d~~~~~~s~mF 255 (315)
-..+..++.+.+++|.+.|.|.. +.||.++.. ==++.+.|+.+ .++|+.+++.-.+.+..+|
T Consensus 46 ~~~~~~~~~~ii~~g~~~G~ir~----d~d~~~~a~-~i~g~i~~~~~~w~~~~~~~~~~~~~~~~~~~~ 110 (117)
T d1vi0a2 46 LKGYLNILDGILTEGIQSGEIKE----GLDVRLARQ-MIFGTIDETVTTWVMNDQKYDLVALSNSVLELL 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCT----TCCHHHHHH-HHHHHHHHHHHHHHHTTTCSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccc----CCCHHHHHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 45777888999999999999874 345543321 12333445432 3688888886666655544
No 6
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}
Probab=19.74 E-value=42 Score=24.63 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=23.6
Q ss_pred hhcccCCCCCCCCCCCch-hhhhhchhhHHHHHHHHHHHhhcCHHHHHHH
Q psy11205 232 TGLLVYPSGPLSLDKEPS-EMSEMFRPFRTLLGKIREVLWRLNEDEIARL 280 (315)
Q Consensus 232 ~GLli~pdGpln~d~~~~-~~s~mFrpf~~lL~kIr~lL~~Ls~~EL~~L 280 (315)
.|.....||||.+..+++ +++ -.++|.+.|++||..+
T Consensus 2 RGFSf~~~gpLDMRmd~~~~~s------------A~~~ln~~~~~~L~~I 39 (101)
T d1m6ya1 2 RGFTFEREEPLDMRMDLESEVT------------AQKVLNELPEEELARI 39 (101)
T ss_dssp SCSSSSSCCBSCCCSSTTSSCC------------HHHHHHHSCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCCCcC------------HHHHHhhhhHHHHHHH
Confidence 488888999999987652 222 2355555666665543
No 7
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=18.77 E-value=21 Score=21.95 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHh
Q psy11205 152 IDRIFESLKVFDR 164 (315)
Q Consensus 152 ~~~l~~~L~~FD~ 164 (315)
-++++++++.||+
T Consensus 2 eeel~eAF~~FDk 14 (33)
T d2hf5a1 2 EEEIREAFRVFDK 14 (33)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCC
Confidence 3689999999997
No 8
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=16.87 E-value=1.5e+02 Score=20.51 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11205 17 EALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNKIMDV 62 (315)
Q Consensus 17 e~l~~v~~ELds~Dgr~dp~rc~~LvnqLr~~Qd~vL~i~~~im~e 62 (315)
..+.+++.+|.......|.+.|..++++|...=.+.+..++.-+.+
T Consensus 71 ~~l~~~~~~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~ 116 (118)
T d2a0ba_ 71 RHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 116 (118)
T ss_dssp HHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999988888899999999999998877777777765543
No 9
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.63 E-value=2.7e+02 Score=21.87 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcccccccccCChhhhhhcc---ccchHHHHHHhhccCcccchhhhh---
Q psy11205 38 CTALVNHLRQCQDNVLNICNKIMDVWIPD-DRANRDFRVKFPDDVMQDNL---AGQLWFGAECLAAGSSIMNREAES--- 110 (315)
Q Consensus 38 c~~LvnqLr~~Qd~vL~i~~~im~e~ip~-~Ra~RdfrvKFPeev~~dnl---~g~lwFgAEcLaAGs~I~n~E~es--- 110 (315)
|..|-=|.|.+=..-+..+++| .--+|. .....|| +||.++.+.+= ...+.+..|.|-.=..|-+.+..|
T Consensus 3 ~~~l~~q~r~~n~e~l~LL~~M-~~~~~~CLkdr~dF--~fP~e~~~~~q~qk~~a~~v~~emlqqif~LF~~~~ssa~W 79 (166)
T d1au1a_ 3 YNLLGFLQRSSNFQCQKLLWQL-NGRLEYCLKDRMNF--DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGW 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-CCCCSGGGGGCCCC--CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHTSCCGGGTC
T ss_pred chHHHHHHHHhHHHHHHHHHHc-cCCChhhhhcCcCC--CCCHHHhccchhhHHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence 4445555555555566666663 432221 1222344 59999997662 234778888877655555555544
Q ss_pred --hhccHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcc---cccccHHHHHHHHHHHHhhhhhhhh
Q psy11205 111 --AAMRPLAKALTKSLENVRNLLREYSLRSTHPSDIFF---TDDLYIDRIFESLKVFDRLLAEFEL 171 (315)
Q Consensus 111 --~~lRPLA~~L~~SLe~vR~~Lr~qsL~~p~~~~~~~---~~~~y~~~l~~~L~~FD~lfaEFEl 171 (315)
..+--+-..|.+.|+.+..-+.++.-....+.+... .+-.|...|..-|+.=+...|-.|.
T Consensus 80 net~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk~K~YS~CAWEi 145 (166)
T d1au1a_ 80 NETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTI 145 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCTTTHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCcccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345667778888888888877776443332222111 2346666676666665555554454
No 10
>d1rxqa_ a.213.1.1 (A:) YfiT {Bacillus subtilis [TaxId: 1423]}
Probab=14.41 E-value=1.2e+02 Score=22.08 Aligned_cols=44 Identities=11% Similarity=0.300 Sum_probs=33.7
Q ss_pred ccCCCCCCCC--CCCchhhhhhchhhHHHHHHHHHHHhhcCHHHHH
Q psy11205 235 LVYPSGPLSL--DKEPSEMSEMFRPFRTLLGKIREVLWRLNEDEIA 278 (315)
Q Consensus 235 li~pdGpln~--d~~~~~~s~mFrpf~~lL~kIr~lL~~Ls~~EL~ 278 (315)
+-||=|+... +-..++..++-.-....-..+.+++..||++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~~L~~~l~~Ls~e~l~ 47 (174)
T d1rxqa_ 2 LSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEVMTDSQLD 47 (174)
T ss_dssp CSCTTCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc
Confidence 3577777766 3334678888888888888888899999999874
Done!