RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11205
(315 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-08
Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 93/268 (34%)
Query: 109 ESAAMRPLAKALTK-SLENV----RNL------LREYSLRSTH-PSDIFFTDDLYIDRIF 156
++ + RPL L+ SLE+V L+E + P++ F DD
Sbjct: 2 DAYSTRPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD------- 52
Query: 157 ESLKVFDRLLAEFELGYVTAMVPVKTAKEY-EMQQLVMVLFSET-LQR----ALRVGLL- 209
E + L+ +F LGYV+++V ++ ++ L + F L+ AL LL
Sbjct: 53 EPTTPAE-LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 210 --------SQEMIEAY--------------EPSLMFTIPRLAIVTGLL-VYPS----GPL 242
++E+I+ Y S +F A+ G + G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR----AVGEGNAQLVAIFGGQGNT 166
Query: 243 S--LDKEPSEMSEMFRPFRTLLG----KIREVLWRLNEDEIAR---------LERLLCSV 287
+ E+ ++++ + L+G E L L + + L
Sbjct: 167 DDYFE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--- 219
Query: 288 DEPTPPPVPAVNTTPDEE--TSTPLRLP 313
+ P + TPD++ S P+ P
Sbjct: 220 ENP--------SNTPDKDYLLSIPISCP 239
Score = 42.7 bits (100), Expect = 1e-04
Identities = 56/397 (14%), Positives = 104/397 (26%), Gaps = 178/397 (44%)
Query: 4 DDQ-----SLLAQFFYADEALTFVAAELDSFDGREDPERCTALVNHLRQCQDNVLNICNK 58
DD+ L+ +F L +V++ ++ + + L L + ++ L
Sbjct: 51 DDEPTTPAELVGKF------LGYVSSLVEP---SKVGQFDQVLNLCLTEFENCYLE---- 97
Query: 59 IMDVWIPDDRANRD---FRVKFPDDVMQDNLAGQLW----FGAECLAAGSSIMNREAESA 111
D K + + + A + A ++++ SA
Sbjct: 98 -----------GNDIHALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRPF-DKKSNSA 144
Query: 112 -------------AM---------------------RPLAKALTKSLENVRNLLREYSLR 137
A+ L L ++ L E R
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL---IKFSAETLSELI-R 200
Query: 138 STHPSDIFFT----------------DDLYIDRIFESLKVFDRL-LAEFE-----LGY-- 173
+T ++ FT D Y+ I S + + LA + LG+
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 174 -----------------VTAMVP--VKTAKEYE--MQQLVMVLF---SETLQRALRVGLL 209
VTA+ + + + +++ + VLF A L
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSL 319
Query: 210 SQEMIEAYE------PSLMFTI--------------------------------PRLAIV 231
++E PS M +I + +V
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 232 TGLLVYPSGPLSLD---------KEPSEMSEMFRPFR 259
+G P P SL K PS + + PF
Sbjct: 380 SG----P--PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 2e-08
Identities = 43/316 (13%), Positives = 88/316 (27%), Gaps = 96/316 (30%)
Query: 32 REDPERCTALVNHLRQCQDNVLNI-------CNK---IMDVWIPDDRANRDFRV--KFPD 79
R P L L + + N+ K +DV ++V K
Sbjct: 133 RLQPY--LKLRQALLELRPA-KNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF 182
Query: 80 DVMQDNLAGQLW--FGAECLAAGSSIMNREAESAAMRPLAKALTKS-------LENVRNL 130
+ W C + + + + + P + + + +++
Sbjct: 183 KI--------FWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 131 LREYSLRSTHPSDIFFTDDLYIDRIFESLKVFD---RLLAEFELGYVTAMVPVKTAKEYE 187
LR + + + ++ + F+ ++L VT + T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 188 MQQLVMVLF-SETLQRALRVGLLSQ--EMIEAYEPSLMFTI-PR-LAIVTGLLVYPSGP- 241
+ M L E LL + + P + T PR L+I+ + G
Sbjct: 291 LDHHSMTLTPDEVK------SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLA 342
Query: 242 ------------------LSLDK-EPSEMSEMFR-----------PFRTLLGKIREVLWR 271
SL+ EP+E +MF P L ++W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIWF 397
Query: 272 -LNEDEIARLERLLCS 286
+ + ++ + L
Sbjct: 398 DVIKSDVMVVVNKLHK 413
Score = 43.7 bits (102), Expect = 7e-05
Identities = 51/323 (15%), Positives = 87/323 (26%), Gaps = 134/323 (41%)
Query: 2 LKDDQS--LLAQFFYADE-------------ALTFVAAELDSFDGREDPERCTALVNHLR 46
L D+ LL ++ L+ +A + R+ ++ +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-----RDGLAT----WDNWK 348
Query: 47 QCQ-DNVLNICNKIMDVWIPDD-RAN-RDFRVKFPDDV-MQDNLAGQLWFGAECLAAGSS 102
D + I ++V P + R V FP + L +WF
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVI------- 400
Query: 103 IMNREAESAAMRPLAKALTKSLENVRNLLREYSLRSTHPSDIFFTDDLYIDRIFESLKVF 162
+S M + K SL + S+ +Y++ LKV
Sbjct: 401 ------KSDVMVVVNKLHKYSLVEKQPKESTISI---P--------SIYLE-----LKV- 437
Query: 163 DRLLAEFELGYVTAMVPVKTAKEYEMQQLVMVLFSETLQRALRVGLLSQEMIEAYEPSLM 222
K EY + + +++ Y
Sbjct: 438 ------------------KLENEYALHR---------------------SIVDHYN---- 454
Query: 223 FTIPRLAIVTGLLVYPS---GPLSLDK-------------EPSEMSEMFRP----FRTLL 262
IP+ + S P LD+ E E +FR FR L
Sbjct: 455 --IPK--------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 263 GKIREV--LWRLNEDEIARLERL 283
KIR W + + L++L
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQL 527
Score = 34.4 bits (78), Expect = 0.046
Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 87/277 (31%)
Query: 56 CNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWFGAECLAAGSSIMN-REAESAAMR 114
I+ V+ +F K D+ + L+ E I+ ++A S +R
Sbjct: 18 YKDILSVFEDAFV--DNFDCKDVQDMPKSILSK-----EEI----DHIIMSKDAVSGTLR 66
Query: 115 PLAKALTKSLENVRN------------LLREYSLRSTHPSDIFFTDDLYIDRIFESLKVF 162
L+K E V+ L+ PS + DR++ +VF
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 163 DRLLAEFELGYVTAMVPVKTAKEYEMQQLVMVLFSETLQRALRVGLLSQEMIEAYEPSLM 222
+ V + Y L++AL
Sbjct: 127 AKY-------------NVSRLQPY-----------LKLRQALL----------------- 145
Query: 223 FTIPRLAIVTGLLVYPSGPLSLDKEPSEM-SEMFRPFRTLLGKIREVLW----RLNEDE- 276
L +L+ G L K + + ++ ++ ++ W N E
Sbjct: 146 ----ELRPAKNVLID--GVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 277 -IARLERLLCSVDEPTPPPVPAVNTTPDEETSTPLRL 312
+ L++LL +D P + D ++ LR+
Sbjct: 198 VLEMLQKLLYQID-------PNWTSRSDHSSNIKLRI 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.025
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 19/44 (43%)
Query: 187 EMQQLVMVLFSETLQRALRVGLLSQEMIEAYEPSLMFTIPRLAI 230
E Q L + LQ +L++ Y + P LAI
Sbjct: 18 EKQAL------KKLQASLKL----------YADD---SAPALAI 42
Score = 30.7 bits (68), Expect = 0.36
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 274 EDEIARLERLLCSVDEPTPPPVPAVNTT 301
+ + +L+ L + P A+ T
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKAT 45
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 34.5 bits (79), Expect = 0.041
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 124 LENVRNLLREYSLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFELGYVTAM-VPVKT 182
LE VR ++ L S I+ D L +D F KV + E + M VK
Sbjct: 311 LERVRKVMAS--LTGHEMSAIYIQDLLAVD-TFIPRKVQGGMAGECAMENAVGMAAMVKA 367
Query: 183 AKEYEMQQLVMVLFSETLQRALRVGLLSQEM 213
+ +MQ + L S LQ + VG + M
Sbjct: 368 DRL-QMQVIAREL-SARLQTEVVVGGVEANM 396
>3kxs_F Capsid protein; core protein, hepadnavirus, four helix bundle,
icosahedral, dimer, DNA-binding, HOST cytoplasm; 2.25A
{Hepatitis b virus subtype adyw} PDB: 2g33_C 2g34_C
1qgt_C
Length = 143
Score = 31.2 bits (70), Expect = 0.18
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 30 DGREDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIP---DDRANRDFRVKFPDDVMQ 83
D E PE C+ LRQ C +++ + W+ +D A+RD V + + +
Sbjct: 40 DALESPEHCSPHHTALRQAILCWGDLMTLAT-----WVGTNLEDPASRDLVVSYVNTNVG 94
Query: 84 DNLAGQLWFGAECLAAGSS 102
LWF CL G
Sbjct: 95 LKFRQLLWFHISCLTFGRE 113
>2qij_C Core antigen; viral capsid protein, icosahedral virus; 8.90A
{Hepatitis b virus subtype adyw}
Length = 157
Score = 30.1 bits (67), Expect = 0.47
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 30 DGREDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNL 86
D E PE C+ LRQ C +++ + + +D A+RD V + + +
Sbjct: 49 DALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNL--EDPASRDLVVSYVNTNVGLKF 106
Query: 87 AGQLWFGAECLAAGSS 102
LWF CL G
Sbjct: 107 RQLLWFHISCLTFGRE 122
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis}
SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A*
1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A
1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A
1gkb_A* 1i3h_A ...
Length = 237
Score = 28.3 bits (62), Expect = 3.2
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 21 FVAAELDSFDGREDPE----RCTALVNHLRQCQDNVLNICN-KIMDVWIPDDRANRDFRV 75
VA ELD++ + + + +R + N+ N K+ I + ++
Sbjct: 4 IVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSA 63
Query: 76 KF 77
Sbjct: 64 VV 65
>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A
{Lactococcus phage P2} PDB: 2x53_Y 2x54_Y 2x5a_Y
Length = 375
Score = 28.5 bits (63), Expect = 3.3
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 80 DVMQDNLAGQLWFGAECLAAGSSIMNREAESAAMRPLAKALTKSLENVRNLLREYSLRST 139
D ++NL +F + AG + +NR+AE+++ +AK + ++ +++ T
Sbjct: 139 DPNKNNLMSYGYFFNSSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQHAPSET 198
Query: 140 HPSDIFFTD 148
P ++ F +
Sbjct: 199 DPRNLLFIN 207
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc
genomics, PSI-2, protein structure initiative, joint
center structural genomics; 2.55A {Bacillus halodurans}
Length = 233
Score = 28.1 bits (63), Expect = 3.4
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 206 VGLLSQEMIEAYEPSLMFTIPR--------LAIVTGL-LVYPSGPLSLDKEPSEMSEMFR 256
+G + EM +MF++ R + + G +Y +G K + +
Sbjct: 146 IGQWTAEMF------MMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWA 199
Query: 257 PFRTLLGKIREVLWRLNEDEIARLERL 283
P+ T+ LW+ L
Sbjct: 200 PYETVACLY---LWKAAGTFAEEYRSL 223
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic
progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab
lab} SCOP: b.29.1.1
Length = 133
Score = 27.3 bits (60), Expect = 3.7
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 21 FVAAELDSFDGREDPE----RCTALVNHLRQCQDNVLNICN-KIMDVWIPDDRANRDFRV 75
VA E D++ + + VN +R + N KI I + ++ V
Sbjct: 3 VVAVEFDTYLNPDYGDPNYIHIGIDVNSIRSKVTAKWDWQNGKIATAHISYNSVSKRLSV 62
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 27.5 bits (62), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 93 GAECLAAGSSIMNREAESAAMRPLAKALTKSLEN 126
GA + AG+SI N E + + ++ K L N
Sbjct: 194 GANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,917,517
Number of extensions: 300791
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 27
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)