RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11205
(315 letters)
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B
virus [TaxId: 10407]}
Length = 142
Score = 29.5 bits (66), Expect = 0.26
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 30 DGREDPERCTALVNHLRQ---CQDNVLNICNKIMDVWIP---DDRANRDFRVKFPDDVMQ 83
+ E PE C+ LRQ C ++ + W+ +D A+RD V + + M
Sbjct: 40 EALESPEHCSPHHTALRQAILCWGELMTLAT-----WVGNNLEDPASRDLVVNYVNTNMG 94
Query: 84 DNLAGQLWFGAECLAAG 100
+ LWF CL G
Sbjct: 95 LKIRQLLWFHISCLTFG 111
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 29.1 bits (65), Expect = 0.26
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 120 LTKSLENVRNLLREY--SLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFE 170
T ++ N++ L ++ S D F DL + + LK +D++ E
Sbjct: 16 FTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELL 68
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide
phosphate guanylyltransferase CobU {Salmonella
typhimurium [TaxId: 90371]}
Length = 180
Score = 29.6 bits (66), Expect = 0.31
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 20 TFVAAELDSFDGREDPE-------------RCTALVNHLRQCQDNVLNICNKIMDVWIPD 66
T V L + G DPE L+ ++C V+ + N++ +P+
Sbjct: 84 TMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPE 143
Query: 67 DRANRDFR 74
+R R FR
Sbjct: 144 NRLARHFR 151
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
{Lactobacillus plantarum [TaxId: 1590]}
Length = 266
Score = 29.1 bits (65), Expect = 0.67
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 265 IREVLWRLNEDEIA---RLERLLCSVDEPTPPPVPAVNTTPDEE 305
+R++L L E + + ++E VP + E
Sbjct: 167 VRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVP--GDMKEIE 208
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 27.5 bits (61), Expect = 0.91
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 120 LTKSLENVRNLLREY--SLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFE 170
T + N+R L + + + DL LK +D + EF
Sbjct: 17 FTGVMGNLRCLYDNHFVEGTNVRSTGQLLQHDLIFPIKDLKLKNYDSVKTEFN 69
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 27.9 bits (61), Expect = 1.2
Identities = 10/76 (13%), Positives = 27/76 (35%)
Query: 47 QCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWFGAECLAAGSSIMNR 106
+ + + +M + ++ ++ + + GA + AG+SI N
Sbjct: 145 EPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNA 204
Query: 107 EAESAAMRPLAKALTK 122
E + + ++ K
Sbjct: 205 EDPKYVIDTMRVSVQK 220
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 27.7 bits (61), Expect = 2.0
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 140 HPSDIFFTDDLYIDRIFESLKVFDRLLAEFELGYVTAMVPVKTAKEYEMQQLVMVLFSET 199
++ F D Y+DR + S++ L+A ++ Y + ++ E V + E
Sbjct: 71 PDTNYLFMGD-YVDRGYYSVETVTLLVA-LKVRYRERITILRGNHESRQITQVYGFYDEC 128
Query: 200 LQR 202
L++
Sbjct: 129 LRK 131
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 27.1 bits (59), Expect = 2.2
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 44 HLRQCQDNVLNICNKIMDVWIPDDRANRDFRVKFPDDVMQDNLAGQLWFGAECLAAGSSI 103
+ + + + + R + + DN A + GA+ ++ S+I
Sbjct: 143 PIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAI 202
Query: 104 MNREAESAAMRPLAKALTKSLENVRN 129
E +A A+ + ++ +
Sbjct: 203 SQAEDPESA----ARKFREEIQTYKT 224
>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB
{Staphylococcus aureus [TaxId: 1280]}
Length = 121
Score = 26.4 bits (58), Expect = 2.6
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 120 LTKSLENVRNLLREY--SLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFE 170
T +EN++ L + S + D F DL L +D + EF+
Sbjct: 17 FTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFK 69
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 26.1 bits (57), Expect = 4.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 121 TKSLENVRNLLREYSLRSTHPSDIFFTDDLY 151
K +E V L+ +D+F T DLY
Sbjct: 72 FKQMEQVAQFLKAAEDYGVIKTDMFQTVDLY 102
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 26.5 bits (58), Expect = 4.2
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 126 NVRNLLREYSLRSTHPSDIFFTDDLYIDRIFESLKVFDRLLAEFELGYVTAMVPVKTAKE 185
+LLR + P + Y+DR +SL+ LLA +++ Y ++ E
Sbjct: 63 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLA-YKIKYPENFFLLRGNHE 121
Query: 186 YEMQQLVMVLFSETLQR 202
+ + E +R
Sbjct: 122 CASINRIYGFYDECKRR 138
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 25.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 121 TKSLENVRNLLREYSLRSTHPSDIFFTDDLY 151
LEN+ N LR P DIF +DL+
Sbjct: 56 WHKLENIGNFLRAIKHYGVKPHDIFEANDLF 86
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 25.8 bits (56), Expect = 7.3
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 33 EDPERCTALVNHLRQCQDNVLNICNKIMDVWIPD-DRANRDFRVKFPDDVMQDNLAGQLW 91
+ ++ + + + C + + D F ++ V +
Sbjct: 128 DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYE 187
Query: 92 FGAECLAAGSSIMNREAESAAMRPLAKAL 120
GA AGS + + ++ L AL
Sbjct: 188 AGANVFVAGSYLFKASDLVSQVQTLRTAL 216
>d2owna1 d.38.1.8 (A:3-149) Putative oleoyl-ACP thioesterase LP0708
{Lactobacillus plantarum [TaxId: 1590]}
Length = 147
Score = 24.8 bits (53), Expect = 9.6
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 181 KTAKEYEMQQLVMVLFSETLQRALRVGLLSQEMIEAYEPSLMFTIPRL 228
++ + V+ S+T +R ++ + E++ Y+ ++ IPRL
Sbjct: 102 ADGQQLAYITSIWVMMSQTTRRIVK---ILPELVAPYQSEVVKRIPRL 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,167,052
Number of extensions: 54976
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 19
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)