Query psy11208
Match_columns 116
No_of_seqs 123 out of 1307
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:53:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0852|consensus 100.0 1.3E-33 2.8E-38 210.9 8.5 109 1-115 84-196 (196)
2 COG0450 AhpC Peroxiredoxin [Po 100.0 6.9E-32 1.5E-36 203.7 8.0 106 1-113 84-193 (194)
3 PRK15000 peroxidase; Provision 100.0 2E-28 4.4E-33 184.8 8.9 108 1-114 85-196 (200)
4 PTZ00137 2-Cys peroxiredoxin; 99.9 4.6E-27 1E-31 184.7 8.9 107 1-114 149-259 (261)
5 PTZ00253 tryparedoxin peroxida 99.9 3E-25 6.5E-30 166.3 8.4 107 1-113 87-197 (199)
6 PRK10382 alkyl hydroperoxide r 99.9 3.6E-25 7.8E-30 166.1 7.9 93 14-110 90-187 (187)
7 PRK13190 putative peroxiredoxi 99.9 6.7E-25 1.4E-29 165.4 8.5 105 1-112 78-186 (202)
8 PRK13191 putative peroxiredoxi 99.9 1.3E-24 2.9E-29 165.8 8.5 104 1-111 84-196 (215)
9 PRK13189 peroxiredoxin; Provis 99.9 3.5E-24 7.6E-29 164.0 8.7 104 1-111 86-198 (222)
10 cd03016 PRX_1cys Peroxiredoxin 99.9 5.1E-23 1.1E-27 155.0 8.0 89 14-106 86-180 (203)
11 PRK13599 putative peroxiredoxi 99.9 1.4E-21 3E-26 149.3 8.6 95 14-112 89-195 (215)
12 TIGR03137 AhpC peroxiredoxin. 99.8 3.1E-21 6.7E-26 143.5 8.0 92 14-109 90-186 (187)
13 KOG0854|consensus 99.7 1.4E-18 3E-23 131.0 5.6 108 1-112 83-203 (224)
14 cd03015 PRX_Typ2cys Peroxiredo 99.7 1.4E-17 3E-22 121.7 8.1 79 14-96 91-173 (173)
15 COG1225 Bcp Peroxiredoxin [Pos 99.6 7.1E-15 1.5E-19 108.4 6.6 67 13-84 84-156 (157)
16 PRK00522 tpx lipid hydroperoxi 99.1 2.8E-10 6.2E-15 83.1 7.0 64 14-81 97-166 (167)
17 cd03013 PRX5_like Peroxiredoxi 99.0 9.6E-10 2.1E-14 79.7 6.3 51 16-68 90-145 (155)
18 cd03014 PRX_Atyp2cys Peroxired 98.9 4.5E-09 9.7E-14 73.7 6.8 58 17-77 83-142 (143)
19 cd03018 PRX_AhpE_like Peroxire 98.9 7.6E-09 1.7E-13 72.5 6.8 64 14-81 83-148 (149)
20 cd03017 PRX_BCP Peroxiredoxin 98.8 1.6E-08 3.4E-13 70.1 5.8 60 14-77 78-140 (140)
21 cd02970 PRX_like2 Peroxiredoxi 98.7 4.5E-08 9.7E-13 68.0 5.4 48 14-62 78-148 (149)
22 PRK09437 bcp thioredoxin-depen 98.7 7.3E-08 1.6E-12 68.5 6.4 63 14-81 85-153 (154)
23 cd02969 PRX_like1 Peroxiredoxi 98.6 9.2E-08 2E-12 69.3 6.8 70 14-93 87-171 (171)
24 cd02971 PRX_family Peroxiredox 98.6 9.4E-08 2E-12 66.0 6.2 52 15-67 79-133 (140)
25 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 1.5E-07 3.2E-12 63.7 4.7 45 14-59 80-124 (124)
26 cd03012 TlpA_like_DipZ_like Tl 98.5 2.1E-07 4.5E-12 64.3 5.0 43 13-62 82-124 (126)
27 PF08534 Redoxin: Redoxin; In 98.4 8.2E-07 1.8E-11 62.2 6.0 51 14-65 83-136 (146)
28 KOG0855|consensus 98.2 3E-06 6.5E-11 64.0 6.3 65 13-81 144-209 (211)
29 PF10417 1-cysPrx_C: C-termina 98.2 4.1E-07 8.9E-12 53.0 1.0 26 87-112 10-39 (40)
30 PRK15412 thiol:disulfide inter 98.2 3.3E-06 7.2E-11 62.4 5.2 45 14-65 119-164 (185)
31 TIGR01626 ytfJ_HI0045 conserve 98.1 4.7E-06 1E-10 62.9 4.9 58 15-83 121-182 (184)
32 COG2077 Tpx Peroxiredoxin [Pos 98.0 5.1E-06 1.1E-10 61.3 4.0 50 14-63 97-150 (158)
33 TIGR00385 dsbE periplasmic pro 98.0 8.7E-06 1.9E-10 59.4 4.3 44 14-64 114-158 (173)
34 PRK03147 thiol-disulfide oxido 97.9 3.5E-05 7.6E-10 55.1 6.7 43 14-63 116-158 (173)
35 PTZ00256 glutathione peroxidas 97.9 3.8E-06 8.2E-11 62.1 1.5 51 14-64 104-168 (183)
36 cd03010 TlpA_like_DsbE TlpA-li 97.9 2.3E-05 5E-10 53.6 5.2 44 14-64 77-121 (127)
37 PLN02412 probable glutathione 97.9 1.2E-05 2.7E-10 58.7 3.3 50 14-64 92-151 (167)
38 cd03011 TlpA_like_ScsD_MtbDsbE 97.7 0.00012 2.6E-09 49.5 5.2 42 14-63 71-112 (123)
39 TIGR02540 gpx7 putative glutat 97.6 4.2E-05 9.2E-10 54.5 3.1 61 14-82 85-151 (153)
40 cd02968 SCO SCO (an acronym fo 97.6 5.7E-05 1.2E-09 52.2 3.7 47 14-61 84-141 (142)
41 cd02966 TlpA_like_family TlpA- 97.6 0.00014 3E-09 46.9 4.8 40 14-60 75-114 (116)
42 cd00340 GSH_Peroxidase Glutath 97.6 7.3E-05 1.6E-09 53.3 3.2 50 14-64 84-143 (152)
43 TIGR02661 MauD methylamine deh 97.5 0.00014 3E-09 54.1 3.9 52 15-78 126-177 (189)
44 PLN02399 phospholipid hydroper 97.3 0.00031 6.8E-09 54.8 4.1 51 14-64 162-221 (236)
45 cd02967 mauD Methylamine utili 97.0 0.00087 1.9E-08 44.7 3.6 38 14-60 74-112 (114)
46 PTZ00056 glutathione peroxidas 96.9 0.0023 4.9E-08 48.2 5.4 49 13-62 100-163 (199)
47 cd03008 TryX_like_RdCVF Trypar 96.6 0.0016 3.5E-08 47.3 2.6 34 19-59 95-128 (146)
48 PRK14018 trifunctional thiored 96.4 0.0061 1.3E-07 52.6 5.5 41 17-64 120-160 (521)
49 PRK13728 conjugal transfer pro 96.4 0.0075 1.6E-07 45.5 5.2 45 15-64 112-158 (181)
50 cd03009 TryX_like_TryX_NRX Try 96.2 0.0021 4.5E-08 44.2 1.3 38 15-60 79-116 (131)
51 PLN02919 haloacid dehalogenase 96.1 0.015 3.2E-07 53.8 6.5 44 13-63 479-522 (1057)
52 PF13911 AhpC-TSA_2: AhpC/TSA 95.1 0.06 1.3E-06 36.4 5.1 48 14-62 34-113 (115)
53 cd02964 TryX_like_family Trypa 93.6 0.12 2.6E-06 35.6 4.0 26 29-60 91-116 (132)
54 PF13905 Thioredoxin_8: Thiore 93.3 0.023 5E-07 36.6 -0.1 26 24-56 70-95 (95)
55 PF09695 YtfJ_HI0045: Bacteria 92.0 0.2 4.4E-06 37.3 3.4 55 15-78 101-156 (160)
56 TIGR02738 TrbB type-F conjugat 91.9 0.27 5.9E-06 35.7 4.1 21 43-63 118-139 (153)
57 PF00837 T4_deiodinase: Iodoth 91.6 0.56 1.2E-05 36.9 5.7 57 14-83 179-236 (237)
58 COG0678 AHP1 Peroxiredoxin [Po 90.3 0.87 1.9E-05 34.0 5.4 46 17-64 99-149 (165)
59 PF13098 Thioredoxin_2: Thiore 89.7 0.65 1.4E-05 30.5 4.0 29 29-63 74-102 (112)
60 cd02950 TxlA TRX-like protein 89.1 1.4 3.1E-05 31.1 5.7 29 29-63 68-96 (142)
61 cd02951 SoxW SoxW family; SoxW 89.0 0.75 1.6E-05 31.1 4.0 31 26-63 74-105 (125)
62 PF05176 ATP-synt_10: ATP10 pr 85.1 1.4 3E-05 34.7 4.0 43 16-63 192-236 (252)
63 TIGR02740 TraF-like TraF-like 81.4 1.7 3.6E-05 34.4 3.1 34 23-63 216-250 (271)
64 cd02958 UAS UAS family; UAS is 81.2 3.4 7.3E-05 27.6 4.2 44 26-82 65-109 (114)
65 cd02955 SSP411 TRX domain, SSP 79.9 5.8 0.00013 27.8 5.2 37 43-82 80-120 (124)
66 COG1999 Uncharacterized protei 79.5 5 0.00011 30.4 5.1 50 26-83 145-203 (207)
67 COG3054 Predicted transcriptio 78.3 5.5 0.00012 29.9 4.8 54 20-83 129-182 (184)
68 cd02956 ybbN ybbN protein fami 76.7 5.8 0.00013 25.2 4.1 34 20-61 50-83 (96)
69 cd02961 PDI_a_family Protein D 75.0 6.1 0.00013 24.3 3.8 34 15-55 49-83 (101)
70 cd02948 TRX_NDPK TRX domain, T 74.0 12 0.00027 24.4 5.3 52 16-83 51-102 (102)
71 cd02953 DsbDgamma DsbD gamma f 72.9 3.9 8.4E-05 26.6 2.6 29 26-61 62-91 (104)
72 cd03065 PDI_b_Calsequestrin_N 72.9 7.7 0.00017 27.1 4.2 53 15-83 65-118 (120)
73 TIGR01352 tonB_Cterm TonB fami 72.2 11 0.00023 22.8 4.4 39 44-84 12-50 (74)
74 KOG0541|consensus 71.8 6.8 0.00015 29.4 3.9 47 17-65 105-156 (171)
75 PRK09381 trxA thioredoxin; Pro 70.9 11 0.00023 24.6 4.4 35 21-63 60-94 (109)
76 cd02975 PfPDO_like_N Pyrococcu 70.2 6.6 0.00014 26.5 3.3 31 16-53 54-85 (113)
77 PRK10606 btuE putative glutath 69.3 9.4 0.0002 28.5 4.3 16 46-61 148-163 (183)
78 PF13778 DUF4174: Domain of un 67.6 29 0.00062 23.9 6.2 66 8-85 36-113 (118)
79 PF03544 TonB_C: Gram-negative 66.8 12 0.00025 22.9 3.8 38 43-82 17-54 (79)
80 cd02963 TRX_DnaJ TRX domain, D 65.8 18 0.00039 24.0 4.8 38 15-60 57-95 (111)
81 cd02994 PDI_a_TMX PDIa family, 65.8 18 0.00039 23.1 4.6 27 22-56 57-83 (101)
82 TIGR01068 thioredoxin thioredo 65.1 29 0.00062 21.5 5.4 38 16-61 47-85 (101)
83 cd02959 ERp19 Endoplasmic reti 64.4 17 0.00036 24.8 4.4 31 29-63 66-96 (117)
84 cd02985 TRX_CDSP32 TRX family, 63.8 11 0.00025 24.6 3.5 28 27-62 62-89 (103)
85 smart00594 UAS UAS domain. 62.8 19 0.00041 24.5 4.5 24 25-54 74-97 (122)
86 cd03002 PDI_a_MPD1_like PDI fa 62.4 12 0.00025 24.2 3.3 24 25-55 63-86 (109)
87 TIGR01126 pdi_dom protein disu 62.3 27 0.00058 21.8 4.9 27 22-55 55-81 (102)
88 cd03005 PDI_a_ERp46 PDIa famil 59.5 26 0.00057 22.0 4.5 32 23-62 60-91 (102)
89 PF02630 SCO1-SenC: SCO1/SenC; 59.2 9 0.00019 27.9 2.5 35 26-61 128-172 (174)
90 PRK00293 dipZ thiol:disulfide 58.5 13 0.00028 32.4 3.7 46 27-84 525-570 (571)
91 PRK11509 hydrogenase-1 operon 58.0 26 0.00055 25.1 4.6 53 16-83 70-123 (132)
92 PF11453 DUF2950: Protein of u 55.6 16 0.00035 29.4 3.5 69 14-95 187-270 (271)
93 KOG1651|consensus 55.4 16 0.00036 27.5 3.3 18 45-62 137-154 (171)
94 PF13103 TonB_2: TonB C termin 55.3 21 0.00047 22.3 3.5 42 41-84 25-66 (85)
95 PRK10996 thioredoxin 2; Provis 55.3 38 0.00083 23.6 5.1 33 22-62 92-124 (139)
96 cd02949 TRX_NTR TRX domain, no 53.1 23 0.0005 22.7 3.4 31 24-62 55-85 (97)
97 PF11720 Inhibitor_I78: Peptid 53.1 19 0.00042 22.0 2.9 19 43-61 41-59 (60)
98 cd02996 PDI_a_ERp44 PDIa famil 52.5 26 0.00056 22.8 3.7 35 15-57 56-91 (108)
99 COG0810 TonB Periplasmic prote 50.8 31 0.00067 26.5 4.4 40 43-84 181-220 (244)
100 smart00775 LNS2 LNS2 domain. T 50.6 20 0.00044 25.8 3.1 39 15-58 118-156 (157)
101 cd02954 DIM1 Dim1 family; Dim1 48.6 30 0.00065 24.0 3.6 38 19-64 51-88 (114)
102 PTZ00051 thioredoxin; Provisio 47.2 47 0.001 20.8 4.2 40 15-62 49-89 (98)
103 cd02984 TRX_PICOT TRX domain, 47.1 45 0.00097 20.8 4.1 31 24-62 56-86 (97)
104 PF00989 PAS: PAS fold; Inter 46.7 19 0.00042 22.3 2.3 16 45-60 12-27 (113)
105 cd02965 HyaE HyaE family; HyaE 46.6 43 0.00092 23.2 4.1 36 19-62 66-101 (111)
106 cd03004 PDI_a_ERdj5_C PDIa fam 45.6 24 0.00053 22.6 2.7 34 22-62 59-92 (104)
107 PTZ00443 Thioredoxin domain-co 45.6 40 0.00086 26.0 4.2 28 23-58 93-120 (224)
108 COG0386 BtuE Glutathione perox 45.4 20 0.00044 26.8 2.4 49 13-61 86-144 (162)
109 PF08448 PAS_4: PAS fold; Int 45.3 21 0.00046 22.0 2.3 15 46-60 7-21 (110)
110 PRK10819 transport protein Ton 42.4 48 0.001 26.0 4.3 39 43-84 182-221 (246)
111 PF13426 PAS_9: PAS domain; PD 42.2 25 0.00055 21.3 2.3 15 46-60 3-17 (104)
112 PLN00115 pollen allergen group 40.5 15 0.00032 26.0 1.0 11 87-97 100-110 (118)
113 PF05988 DUF899: Bacterial pro 40.5 1.1E+02 0.0023 23.8 5.9 69 17-96 130-199 (211)
114 PRK08671 methionine aminopepti 40.1 14 0.0003 29.2 1.0 30 17-58 260-289 (291)
115 cd02989 Phd_like_TxnDC9 Phosdu 40.1 96 0.0021 20.7 5.0 40 20-67 59-98 (113)
116 cd02997 PDI_a_PDIR PDIa family 39.9 45 0.00098 20.9 3.2 28 25-60 64-91 (104)
117 PF03190 Thioredox_DsbH: Prote 39.9 1.4E+02 0.0029 22.2 6.1 59 18-78 74-139 (163)
118 cd02998 PDI_a_ERp38 PDIa famil 39.7 46 0.00099 20.8 3.2 27 25-58 64-90 (105)
119 PF05228 CHASE4: CHASE4 domain 39.5 77 0.0017 21.8 4.6 19 44-62 50-68 (161)
120 cd02947 TRX_family TRX family; 38.1 85 0.0018 18.4 5.4 41 14-62 40-81 (93)
121 COG3322 Predicted periplasmic 34.9 50 0.0011 26.8 3.4 26 43-68 103-128 (295)
122 PF13728 TraF: F plasmid trans 34.8 73 0.0016 24.2 4.1 24 25-55 172-195 (215)
123 cd03003 PDI_a_ERdj5_N PDIa fam 33.5 37 0.0008 21.7 2.1 29 22-58 58-86 (101)
124 PF11211 DUF2997: Protein of u 32.6 32 0.0007 20.4 1.5 16 47-62 2-17 (48)
125 KOG0910|consensus 32.2 70 0.0015 23.6 3.5 41 15-63 93-134 (150)
126 PRK00446 cyaY frataxin-like pr 31.7 37 0.0008 23.3 1.9 30 43-72 43-72 (105)
127 cd09011 Glo_EDI_BRP_like_23 Th 31.0 66 0.0014 20.8 3.0 18 43-60 100-117 (120)
128 COG1443 Idi Isopentenyldiphosp 30.0 91 0.002 23.8 3.9 24 87-110 119-142 (185)
129 cd06006 R3H_unknown_2 R3H doma 28.8 62 0.0013 20.0 2.4 22 29-50 36-58 (59)
130 cd01088 MetAP2 Methionine Amin 28.6 27 0.00059 27.5 0.9 30 17-58 260-289 (291)
131 cd03001 PDI_a_P5 PDIa family, 27.9 86 0.0019 19.6 3.1 31 16-53 51-82 (103)
132 cd07186 CofD_like LPPG:FO 2-ph 27.6 92 0.002 25.4 3.8 41 53-96 157-197 (303)
133 PF12681 Glyoxalase_2: Glyoxal 27.5 80 0.0017 19.6 2.9 17 43-59 91-107 (108)
134 TIGR03421 FeS_CyaY iron donor 26.9 40 0.00086 23.0 1.4 29 43-71 41-69 (102)
135 TIGR01819 F420_cofD LPPG:FO 2- 26.6 1.2E+02 0.0026 24.7 4.2 38 55-95 158-195 (297)
136 TIGR02187 GlrX_arch Glutaredox 26.5 1.1E+02 0.0024 22.7 3.9 31 24-62 65-96 (215)
137 cd02973 TRX_GRX_like Thioredox 26.5 1.4E+02 0.003 17.3 4.2 35 15-59 30-65 (67)
138 cd02999 PDI_a_ERp44_like PDIa 26.3 1E+02 0.0022 20.0 3.3 22 25-53 61-82 (100)
139 cd08344 MhqB_like_N N-terminal 25.8 1E+02 0.0022 19.7 3.2 19 43-61 90-108 (112)
140 PF09717 CPW_WPC: Plasmodium f 25.7 39 0.00085 20.5 1.0 11 86-96 6-16 (60)
141 PF02575 YbaB_DNA_bd: YbaB/Ebf 25.6 1.2E+02 0.0027 19.4 3.6 23 45-67 31-53 (93)
142 cd03026 AhpF_NTD_C TRX-GRX-lik 25.5 1.5E+02 0.0032 19.2 3.9 34 15-58 43-77 (89)
143 TIGR02739 TraF type-F conjugat 25.5 1.1E+02 0.0023 24.3 3.7 21 29-55 205-225 (256)
144 PF13459 Fer4_15: 4Fe-4S singl 25.3 1.5E+02 0.0033 17.8 3.7 17 44-60 18-34 (65)
145 cd08350 BLMT_like BLMT, a bleo 25.1 96 0.0021 20.1 3.0 17 43-59 100-116 (120)
146 cd08357 Glo_EDI_BRP_like_18 Th 24.9 1.1E+02 0.0023 19.5 3.2 17 44-60 107-123 (125)
147 cd02960 AGR Anterior Gradient 24.5 65 0.0014 22.9 2.1 22 41-62 77-98 (130)
148 cd03000 PDI_a_TMX3 PDIa family 24.1 1.7E+02 0.0037 18.7 4.0 26 23-56 59-84 (104)
149 PTZ00102 disulphide isomerase; 24.1 2E+02 0.0043 23.5 5.3 53 16-84 85-138 (477)
150 cd07240 ED_TypeI_classII_N N-t 24.0 1.4E+02 0.003 18.7 3.6 19 44-62 96-114 (117)
151 cd02992 PDI_a_QSOX PDIa family 24.0 99 0.0021 20.6 2.9 25 23-54 65-89 (114)
152 TIGR00412 redox_disulf_2 small 23.7 1.3E+02 0.0028 18.6 3.2 20 29-57 41-60 (76)
153 cd07255 Glo_EDI_BRP_like_12 Th 23.5 1.5E+02 0.0033 18.9 3.7 18 45-62 102-119 (125)
154 cd02993 PDI_a_APS_reductase PD 23.5 1.3E+02 0.0028 19.6 3.4 37 26-72 67-104 (109)
155 PF09631 Sen15: Sen15 protein; 23.3 78 0.0017 21.1 2.3 20 44-63 73-93 (101)
156 cd07252 BphC1-RGP6_N_like N-te 23.2 1.3E+02 0.0028 19.5 3.4 18 45-62 100-117 (120)
157 TIGR00501 met_pdase_II methion 23.2 37 0.00079 26.9 0.7 30 17-58 264-293 (295)
158 PLN00050 expansin A; Provision 23.1 42 0.00091 26.6 1.0 11 87-97 230-240 (247)
159 KOG4614|consensus 22.6 85 0.0018 25.3 2.6 22 43-64 247-268 (287)
160 PF01217 Clat_adaptor_s: Clath 22.3 1.4E+02 0.003 20.6 3.5 19 45-63 3-21 (141)
161 PF13186 SPASM: Iron-sulfur cl 22.1 67 0.0014 18.4 1.6 16 44-59 4-19 (64)
162 PF00379 Chitin_bind_4: Insect 22.0 1.7E+02 0.0038 16.8 3.7 19 46-64 30-48 (52)
163 PF11199 DUF2891: Protein of u 21.9 90 0.002 25.8 2.7 14 87-100 196-209 (326)
164 cd08351 ChaP_like ChaP, an enz 21.7 1.4E+02 0.003 19.4 3.3 19 43-61 102-120 (123)
165 PF08750 CNP1: CNP1-like famil 21.6 1E+02 0.0022 22.3 2.7 22 45-66 41-62 (139)
166 cd09012 Glo_EDI_BRP_like_24 Th 21.5 1.4E+02 0.003 19.3 3.3 17 44-60 106-122 (124)
167 TIGR00411 redox_disulf_1 small 21.5 1.3E+02 0.0027 18.0 2.8 23 24-56 41-63 (82)
168 cd07267 THT_Oxygenase_N N-term 21.4 1.7E+02 0.0036 18.8 3.6 19 44-62 92-110 (113)
169 cd07253 Glo_EDI_BRP_like_2 Thi 21.0 1.3E+02 0.0029 18.8 3.0 17 44-60 107-123 (125)
170 cd08356 Glo_EDI_BRP_like_17 Th 20.8 1.2E+02 0.0026 19.7 2.8 17 43-59 95-111 (113)
171 PLN00193 expansin-A; Provision 20.7 50 0.0011 26.3 1.0 11 87-97 238-248 (256)
172 KOG2501|consensus 20.7 1.2E+02 0.0027 22.4 3.0 26 29-60 107-132 (157)
173 cd07235 MRD Mitomycin C resist 20.6 1.4E+02 0.0029 19.1 3.0 18 43-60 104-121 (122)
174 PF14847 Ras_bdg_2: Ras-bindin 20.5 1.7E+02 0.0036 20.1 3.5 37 46-87 2-38 (105)
175 cd02957 Phd_like Phosducin (Ph 20.4 1.3E+02 0.0029 19.7 3.0 30 27-64 67-96 (113)
176 TIGR00495 crvDNA_42K 42K curve 20.4 52 0.0011 27.4 1.1 32 17-60 305-336 (389)
177 PF02743 Cache_1: Cache domain 20.3 54 0.0012 20.1 1.0 15 44-58 53-67 (81)
178 TIGR03422 mito_frataxin fratax 20.2 50 0.0011 22.4 0.8 29 43-71 43-72 (97)
No 1
>KOG0852|consensus
Probab=100.00 E-value=1.3e-33 Score=210.86 Aligned_cols=109 Identities=49% Similarity=0.786 Sum_probs=106.6
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|++++|+.||+ ..+++|||||.+.+ +++.|||+.++.|++.|++||||++|++|++.++..+++|.++| +||. |
T Consensus 84 W~ntprk~gGl--g~~~iPllsD~~~~-IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE--~lRL-v 157 (196)
T KOG0852|consen 84 WINTPRKQGGL--GPLNIPLLSDLNHE-ISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDE--TLRL-V 157 (196)
T ss_pred HhcCchhhCCc--Cccccceeeccchh-hHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHH--HHHH-H
Confidence 99999999999 99999999999999 99999999999999999999999999999999999999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhcc
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKVN 115 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 115 (116)
+++|.. ++|||||.||+++|+|+++.+|+||++++
T Consensus 158 qAfQ~td~~geVcPagW~pgs~tikp~~~~skeyf~k~~ 196 (196)
T KOG0852|consen 158 QAFQFTDEHGEVCPAGWKPGSDTIKPDVKDSKEYFSKHN 196 (196)
T ss_pred HHHhhhhccCccccCCCCCCCcccCCCcchhHHHHhhcC
Confidence 999998 99999999999999999999999999875
No 2
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.9e-32 Score=203.75 Aligned_cols=106 Identities=38% Similarity=0.677 Sum_probs=102.1
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|.+++++++|+ .+++|||++|.+++ ++++||++.++.|++.|++|||||+|+||++.+++.+.+|+++| +||. |
T Consensus 84 W~~~~~~~~gi--~~i~~PmiaD~~~~-vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE--ilR~-i 157 (194)
T COG0450 84 WKATIREAGGI--GKIKFPMIADPKGE-IARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDE--ILRV-I 157 (194)
T ss_pred HHhcHHhcCCc--cceecceEEcCchh-HHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHH--HHHH-H
Confidence 89999999999 88999999999999 99999999998999999999999999999999999999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhh
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNK 113 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~ 113 (116)
++||+. ++|||||++|+++|+|+++. .+|+++
T Consensus 158 dAlq~~~~hg~vcPanW~~G~~~i~p~~~~-~~~~~~ 193 (194)
T COG0450 158 DALQFVAKHGEVCPANWKPGDKTIKPSPDL-GEYLKE 193 (194)
T ss_pred HHHHHHHHhCCCccCCCCCCCccccCCccc-hhhhhc
Confidence 999995 99999999999999999998 888865
No 3
>PRK15000 peroxidase; Provisional
Probab=99.95 E-value=2e-28 Score=184.79 Aligned_cols=108 Identities=26% Similarity=0.534 Sum_probs=100.0
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|+++.++++|+ .+++||++||++++ ++++||+..+..|.+.|++||||++|+|++++.++.+.+|+++| +||. |
T Consensus 85 w~~~~~~~~g~--~~i~fpllsD~~~~-ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~e--ilr~-l 158 (200)
T PRK15000 85 WRNTPVDKGGI--GPVKYAMVADVKRE-IQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDE--MLRM-V 158 (200)
T ss_pred HHhhHHHhCCc--cccCceEEECCCcH-HHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-H
Confidence 45556677888 78999999999999 99999999877788999999999999999999999999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
+++|+. ++|||||+||+++|+|++..+++||+++
T Consensus 159 ~al~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 196 (200)
T PRK15000 159 DALQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAEN 196 (200)
T ss_pred HHhhhHHhcCCCcCCCCCCCCceeccCHHHHHHHHHHh
Confidence 999985 9999999999999999999999999875
No 4
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.94 E-value=4.6e-27 Score=184.66 Aligned_cols=107 Identities=23% Similarity=0.491 Sum_probs=97.4
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|+++.++++|+ .+++||+|||++++ ++++||++.+ .|.+.|++||||++|+|+++++++...+||++| +||. |
T Consensus 149 w~~~~~~~~g~--~~l~fPlLsD~~~~-iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e--iLr~-l 221 (261)
T PTZ00137 149 WKELDVRQGGV--SPLKFPLFSDISRE-VSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDE--TLRL-F 221 (261)
T ss_pred HHhhhhhhccc--cCcceEEEEcCChH-HHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHH--HHHH-H
Confidence 45555666777 89999999999999 9999999864 478899999999999999999998999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
+++|+. ++|||||+||+++|.|++...++||++-
T Consensus 222 ~alq~~~~~g~~cPanW~~g~~~~~~~~~~~~~~~~~~ 259 (261)
T PTZ00137 222 DAVQFAEKTGNVCPVNWKQGDQAMKPDSQSVKQYLSNR 259 (261)
T ss_pred HHhchhhhcCCCcCCCCCcCCceecCCcccHHHHHhhh
Confidence 999975 9999999999999999999999999864
No 5
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.92 E-value=3e-25 Score=166.30 Aligned_cols=107 Identities=47% Similarity=0.792 Sum_probs=96.8
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|....+..+|+ .+++||+|+|.+++ +++.||++....|++.|++||||++|+|++++++..+.+|+++| +|+. |
T Consensus 87 ~~~~~~~~~~~--~~~~fpll~D~~~~-ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e--~l~~-l 160 (199)
T PTZ00253 87 WTLQERKKGGL--GTMAIPMLADKTKS-IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEE--VLRL-L 160 (199)
T ss_pred HHhChHhhCCc--cccccceEECcHhH-HHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-H
Confidence 33344556777 77999999999999 99999998877788899999999999999999998889999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhh
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNK 113 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~ 113 (116)
++++.. ..||+||+||+++|.|+|..+++||++
T Consensus 161 ~a~~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00253 161 EAFQFVEKHGEVCPANWKKGDPTMKPDPNKSKEGFFS 197 (199)
T ss_pred HhhhhHHhcCCEeCCCCCcCCccccCChHHHHHHhhc
Confidence 999975 999999999999999999999999975
No 6
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.92 E-value=3.6e-25 Score=166.08 Aligned_cols=93 Identities=23% Similarity=0.451 Sum_probs=86.0
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC-----cc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF-----SV 88 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~-----~~ 88 (116)
++++||||||++++ ++++||++.+..|++.|+|||||++|+|+++++.....+|+++| +||. |+++|+. ++
T Consensus 90 ~~l~fpllsD~~~~-ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~e--il~~-l~alq~~~~~~g~~ 165 (187)
T PRK10382 90 AKIKYAMIGDPTGA-LTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASD--LLRK-IKAAQYVASHPGEV 165 (187)
T ss_pred cCCceeEEEcCchH-HHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHH--HHHH-HHhhhhHhhcCCeE
Confidence 68999999999999 99999998776788889999999999999999988889999999 9999 9999983 89
Q ss_pred ccCCCCCCCCCccCChhhHHHH
Q psy11208 89 CPANWKPDSPTIKPSPAESKEY 110 (116)
Q Consensus 89 ~p~~w~~g~~~~~~~~~~~~~~ 110 (116)
||+||+||+++|.|+|+.+.+|
T Consensus 166 ~p~~w~~~~~~~~~~~~~~~~~ 187 (187)
T PRK10382 166 CPAKWKEGEATLAPSLDLVGKI 187 (187)
T ss_pred eCCCCCcCCcceecCHHHhccC
Confidence 9999999999999999877654
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=6.7e-25 Score=165.42 Aligned_cols=105 Identities=24% Similarity=0.411 Sum_probs=91.4
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|+++..++.|+ .++||+++|++++ ++++||+..+..|.+.|++||||++|+|+++..++...+|+++| +||. |
T Consensus 78 w~~~~~~~~g~---~~~fPll~D~~~~-ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~e--llr~-l 150 (202)
T PRK13190 78 WLRDIEERFGI---KIPFPVIADIDKE-LAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDE--IIRI-T 150 (202)
T ss_pred HHHhHHHhcCC---CceEEEEECCChH-HHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHH--HHHH-H
Confidence 34444444555 5899999999999 99999998776777899999999999999999998889999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhh
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFN 112 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~ 112 (116)
++++.. ++|||||+||+++|.|++...+++..
T Consensus 151 ~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~ 186 (202)
T PRK13190 151 KALQVNWKRKVATPANWQPGQEGIVPAPSTLDEAEM 186 (202)
T ss_pred HHhhhHHhcCCCcCCCCCcCCceecCCCCCHHHHHH
Confidence 999985 99999999999999999877776643
No 8
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.3e-24 Score=165.83 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=89.4
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCC-CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPA-GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV 79 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~-G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~ 79 (116)
|++..++.+|+ +++||+|||++++ ++++||++.+.. +.+.|++||||++|+|+++++++.+.+||++| +||.
T Consensus 84 w~~~~~~~~~~---~i~fPllsD~~~~-ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e--ilr~- 156 (215)
T PRK13191 84 WVMWIEKNLKV---EVPFPIIADPMGN-VAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDE--ILRA- 156 (215)
T ss_pred HHhhHHHhcCC---CCceEEEECCchH-HHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-
Confidence 44444444455 7999999999999 999999986543 56899999999999999999999999999999 9999
Q ss_pred HhhhCcC----ccccCCCCC----CCCCccCChhhHHHHh
Q psy11208 80 ISSFGLF----SVCPANWKP----DSPTIKPSPAESKEYF 111 (116)
Q Consensus 80 l~~l~~~----~~~p~~w~~----g~~~~~~~~~~~~~~~ 111 (116)
|+++|+. ++|||||+| |+++|.|++...+++.
T Consensus 157 l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~~~~~~~~~ 196 (215)
T PRK13191 157 IRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKDAK 196 (215)
T ss_pred HHHhhhhhhcCCCcCCCCCCCCCCCCceecCCCCCHHHHH
Confidence 9999985 999999997 9999999986666543
No 9
>PRK13189 peroxiredoxin; Provisional
Probab=99.91 E-value=3.5e-24 Score=164.05 Aligned_cols=104 Identities=22% Similarity=0.408 Sum_probs=89.8
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCC-CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPA-GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV 79 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~-G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~ 79 (116)
|++...+++|+ +++||++||.+++ ++++||+..+.. +.+.|++||||++|+|+++++++...+|+++| +||.
T Consensus 86 w~~~~~~~~g~---~i~fPllsD~~~~-ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e--ilr~- 158 (222)
T PRK13189 86 WVEWIKEKLGV---EIEFPIIADDRGE-IAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDE--ILRL- 158 (222)
T ss_pred HHHhHHHhcCc---CcceeEEEcCccH-HHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-
Confidence 45555555555 6899999999999 999999986543 45889999999999999999999899999999 9999
Q ss_pred HhhhCcC----ccccCCCCCCC----CCccCChhhHHHHh
Q psy11208 80 ISSFGLF----SVCPANWKPDS----PTIKPSPAESKEYF 111 (116)
Q Consensus 80 l~~l~~~----~~~p~~w~~g~----~~~~~~~~~~~~~~ 111 (116)
|+++|.. ++|||||+||+ ++|.|++....++.
T Consensus 159 l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 198 (222)
T PRK13189 159 VKALQTSDEKGVATPANWPPNDLIKDKVIVPPASSVEEAK 198 (222)
T ss_pred HHHhhhHhhcCcCcCCCCCCCCCCCCceeeCCCCCHHHHH
Confidence 9999885 99999999999 99999986666553
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.88 E-value=5.1e-23 Score=154.96 Aligned_cols=89 Identities=25% Similarity=0.480 Sum_probs=80.9
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC--CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC----c
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP--AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF----S 87 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~--~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~----~ 87 (116)
.+++||+|+|++++ ++++||+.... .+.+.|++||||++|+|+++++++...+|++++ +|+. |+++|.. .
T Consensus 86 ~~~~fpil~D~~~~-ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~e--ll~~-l~~lq~~~~~~~ 161 (203)
T cd03016 86 VEIPFPIIADPDRE-VAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDE--ILRV-VDALQLTDKHKV 161 (203)
T ss_pred CCCceeEEECchHH-HHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHHhhHhhcCc
Confidence 47899999999999 99999998653 345789999999999999999998888999999 9999 9999987 9
Q ss_pred cccCCCCCCCCCccCChhh
Q psy11208 88 VCPANWKPDSPTIKPSPAE 106 (116)
Q Consensus 88 ~~p~~w~~g~~~~~~~~~~ 106 (116)
+|||||+||+++|.|++..
T Consensus 162 ~~p~~w~~g~~~~~~~~~~ 180 (203)
T cd03016 162 ATPANWKPGDDVIVPPSVS 180 (203)
T ss_pred CcCCCCCCCCceecCCCCC
Confidence 9999999999999999733
No 11
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.86 E-value=1.4e-21 Score=149.30 Aligned_cols=95 Identities=20% Similarity=0.390 Sum_probs=83.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCC-cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC----cc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGI-PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF----SV 88 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~-~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~----~~ 88 (116)
.+++||+++|++++ ++++||+..+..+. +.|+|||||++|+|+++++++...+|+++| +|+. |++||.. .+
T Consensus 89 ~~i~fPil~D~~~~-va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e--ilr~-l~~lq~~~~~~~~ 164 (215)
T PRK13599 89 IAIPFPVIADDLGK-VSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE--ILRA-LKALQTADQYGVA 164 (215)
T ss_pred CCCceeEEECCCch-HHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHH--HHHH-HHHhhhhhhcCCC
Confidence 37899999999999 99999998655443 689999999999999999988888999999 9999 9999886 99
Q ss_pred ccCCCCC----CCCCccCCh---hhHHHHhh
Q psy11208 89 CPANWKP----DSPTIKPSP---AESKEYFN 112 (116)
Q Consensus 89 ~p~~w~~----g~~~~~~~~---~~~~~~~~ 112 (116)
|||||+| |+++|-|++ +++++-|.
T Consensus 165 ~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~ 195 (215)
T PRK13599 165 LPEKWPNNYLIKDHVIVPPSTDEASANERKE 195 (215)
T ss_pred cCCCCCCCCCCCCcEEEcCCCCHHHHHHhcc
Confidence 9999999 999999996 44455553
No 12
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.85 E-value=3.1e-21 Score=143.50 Aligned_cols=92 Identities=34% Similarity=0.587 Sum_probs=83.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC-----cc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF-----SV 88 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~-----~~ 88 (116)
.+++||++||++++ ++++||++....|++.|+|||||++|+|+++++.....++++++ +|+. |+++++. +.
T Consensus 90 ~~l~fpllsD~~~~-~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~--ll~~-l~~~~~~~~~~~~~ 165 (187)
T TIGR03137 90 GKITYPMLGDPTGV-LTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASE--LLRK-IKAAQYVAAHPGEV 165 (187)
T ss_pred cCcceeEEECCccH-HHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHH--HHHH-HHHhhhHHhcCCee
Confidence 57899999999999 99999998766677889999999999999999987788889999 9999 9999884 89
Q ss_pred ccCCCCCCCCCccCChhhHHH
Q psy11208 89 CPANWKPDSPTIKPSPAESKE 109 (116)
Q Consensus 89 ~p~~w~~g~~~~~~~~~~~~~ 109 (116)
|||+|++|.++|+|+++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T TIGR03137 166 CPAKWKEGAETLKPSLDLVGK 186 (187)
T ss_pred eCCCCCcCCccccCChHhhcc
Confidence 999999999999999876544
No 13
>KOG0854|consensus
Probab=99.75 E-value=1.4e-18 Score=130.96 Aligned_cols=108 Identities=23% Similarity=0.348 Sum_probs=93.5
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccC------CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEP------AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYF 74 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~------~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~ 74 (116)
|.+++.+-+....+.++||++.|++++ ++-.||+.+++ .|.+.|++|||||+-+|+.+..++.+.+|+++|
T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~re-la~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dE-- 159 (224)
T KOG0854|consen 83 WIKDIKSYAKVKNHSVPYPIIADPNRE-LAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDE-- 159 (224)
T ss_pred HHHHHHHHHhccCCCCCCCeecCCchh-hhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHH--
Confidence 666666655553345999999999999 99999999764 367899999999999999999999999999999
Q ss_pred HHHHHHhhhCcC----ccccCCCCCCCCCccCCh---hhHHHHhh
Q psy11208 75 TIRSVISSFGLF----SVCPANWKPDSPTIKPSP---AESKEYFN 112 (116)
Q Consensus 75 iL~~~l~~l~~~----~~~p~~w~~g~~~~~~~~---~~~~~~~~ 112 (116)
|||. |++||+. .+.|+||+||+++|-++. .+++..|.
T Consensus 160 iLRv-idsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp 203 (224)
T KOG0854|consen 160 ILRV-IDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFP 203 (224)
T ss_pred HHHH-HHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcc
Confidence 9999 9999988 788999999999999984 66777664
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.73 E-value=1.4e-17 Score=121.66 Aligned_cols=79 Identities=41% Similarity=0.787 Sum_probs=71.9
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC----ccc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF----SVC 89 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~----~~~ 89 (116)
.+++|++++|.+++ ++++||+.....|.+.|++||||++|+|++.++...+.+++.++ +|+. |+.++.. ++|
T Consensus 91 ~~~~f~~l~D~~~~-~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~--il~~-l~~~~~~~~~~~~~ 166 (173)
T cd03015 91 GKINFPLLADPKKK-ISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDE--TLRV-LDALQFVEEHGEVC 166 (173)
T ss_pred cCcceeEEECCchh-HHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHhhhhhhcCCCc
Confidence 67899999999999 99999998766677889999999999999999987777889999 9999 9888776 999
Q ss_pred cCCCCCC
Q psy11208 90 PANWKPD 96 (116)
Q Consensus 90 p~~w~~g 96 (116)
|+||.+|
T Consensus 167 ~~~~~~~ 173 (173)
T cd03015 167 PANWKPG 173 (173)
T ss_pred CCCCCCC
Confidence 9999987
No 15
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.1e-15 Score=108.37 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=58.6
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCC------CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPA------GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~------G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++|+|+||||++++ ++++|||+.+.. ....|+|||||++|+|+++| ...+...|+++ +|+. |+.+.
T Consensus 84 k~~L~f~LLSD~~~~-v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~--vl~~-l~~l~ 156 (157)
T COG1225 84 KHGLTFPLLSDEDGE-VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADE--VLAA-LKKLA 156 (157)
T ss_pred HhCCCceeeECCcHH-HHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHH--HHHH-HHHhc
Confidence 468899999999999 999999997643 24799999999999999999 45677889999 9999 88775
No 16
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.10 E-value=2.8e-10 Score=83.11 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred cccc-eEEEEeC-CChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEcc-CCCCCCccHHHHHHHHHh
Q psy11208 14 GTVT-AKVLSSR-NRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNV-PRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~-fpLLSD~-~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~-~~~~r~~~e~~iL~~~l~ 81 (116)
.+++ |+++||. ++. ++++||+.... .|++.|+|||||++|+|++.++.. .....|+++ +|++ |+
T Consensus 97 ~~~~~~~~lsD~~~~~-~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~--~l~~-l~ 166 (167)
T PRK00522 97 EGLENVITLSDFRDHS-FGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDA--ALAA-LK 166 (167)
T ss_pred CCCCCceEeecCCccH-HHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHH--HHHH-hh
Confidence 3555 8999995 558 99999998544 688899999999999999999854 466678999 8888 65
No 17
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.00 E-value=9.6e-10 Score=79.72 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=42.8
Q ss_pred cceEEEEeCCChHHHHHhCCCccCC--CC---cceEEEEECCCCCEEEEEEccCCCCC
Q psy11208 16 VTAKVLSSRNRREKEDRIGVLIEPA--GI---PLRGLFIIDPKGVLRQITVNVPRTGK 68 (116)
Q Consensus 16 l~fpLLSD~~~~~vak~yGv~~~~~--G~---~~RatFIID~dG~I~~~~~~~~~~~r 68 (116)
++||||||++++ ++++||++.++. |. +.|+||||| +|+|+|+++...+...
T Consensus 90 ~~f~lLsD~~~~-~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~ 145 (155)
T cd03013 90 DKIRFLADGNGE-FTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGDV 145 (155)
T ss_pred CcEEEEECCCHH-HHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence 489999999999 999999986643 33 689999999 6999999998765443
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.91 E-value=4.5e-09 Score=73.65 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=48.8
Q ss_pred ceEEEEeCC-ChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC-CCCCCccHHHHHH
Q psy11208 17 TAKVLSSRN-RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP-RTGKTLFGYFTIR 77 (116)
Q Consensus 17 ~fpLLSD~~-~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~-~~~r~~~e~~iL~ 77 (116)
+|++++|+. ++ ++++||++....|.+.|+|||||++|+|+++++... ...+++++ +|+
T Consensus 83 ~~~~l~D~~~~~-~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~--~~~ 142 (143)
T cd03014 83 NVTTLSDFRDHS-FGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEA--ALA 142 (143)
T ss_pred CceEeecCcccH-HHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHH--Hhh
Confidence 799999996 89 999999987767778899999999999999998653 45567777 654
No 19
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.87 E-value=7.6e-09 Score=72.52 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=53.6
Q ss_pred cccceEEEEeCC--ChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLSSRN--RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLSD~~--~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
++++||+++|.+ ++ +++.||+.....+++.|++||||++|+|++.+.......++..+ +.+. |+
T Consensus 83 ~~~~~~~~~D~~~~~~-~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~--~~~~-~~ 148 (149)
T cd03018 83 NGLTFPLLSDFWPHGE-VAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPD--YDEA-LD 148 (149)
T ss_pred cCCCceEecCCCchhH-HHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchh--HHHH-hh
Confidence 468999999988 99 99999998655577789999999999999999987766777777 6665 54
No 20
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.77 E-value=1.6e-08 Score=70.10 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=49.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHH
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIR 77 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~ 77 (116)
++++|++++|++++ ++++||+.... .+...|++||||++|+|++++.... .+++++| +|+
T Consensus 78 ~~~~~~~l~D~~~~-~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~--~~~ 140 (140)
T cd03017 78 YGLPFPLLSDPDGK-LAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEE--VLE 140 (140)
T ss_pred hCCCceEEECCccH-HHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHH--HhC
Confidence 57789999999999 99999998542 2345699999999999999997654 7778888 663
No 21
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.67 E-value=4.5e-08 Score=68.04 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=40.8
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC-----------------------CCCcceEEEEECCCCCEEEEEEc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP-----------------------AGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~-----------------------~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.+++||+++|++++ ++++||+.... .+...|++||||++|+|++.++.
T Consensus 78 ~~~~~p~~~D~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 KFLPFPVYADPDRK-LYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cCCCCeEEECCchh-HHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 57899999999999 99999996322 23579999999999999998864
No 22
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.66 E-value=7.3e-08 Score=68.46 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCC--C----CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPA--G----IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~--G----~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
.+++|++++|+++. ++++||+..... | ...|++||||++|+|++++... ...++.++ +|+. ++
T Consensus 85 ~~~~~~~l~D~~~~-~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~~~--~~~~-~~ 153 (154)
T PRK09437 85 ELLNFTLLSDEDHQ-VAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHHDV--VLDY-LK 153 (154)
T ss_pred hCCCCeEEECCCch-HHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhHHH--HHHH-Hh
Confidence 46789999999999 999999875321 1 1248999999999999998654 44567888 8877 54
No 23
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.65 E-value=9.2e-08 Score=69.25 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCC-----CCccHHHHHHHHHhhhCcC--
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTG-----KTLFGYFTIRSVISSFGLF-- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~-----r~~~e~~iL~~~l~~l~~~-- 86 (116)
.+++|++++|.++. +++.||+. ..|++||||++|+|++......... ....+ +.++ |+++...
T Consensus 87 ~~~~~~~l~D~~~~-~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~--~~~~-i~~~l~~~~ 156 (171)
T cd02969 87 HGYPFPYLLDETQE-VAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD--LRAA-LDALLAGKP 156 (171)
T ss_pred CCCCceEEECCchH-HHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHHH--HHHH-HHHHHcCCC
Confidence 46789999999999 99999996 4589999999999998765433221 13455 6666 6665333
Q ss_pred --------ccccCCC
Q psy11208 87 --------SVCPANW 93 (116)
Q Consensus 87 --------~~~p~~w 93 (116)
..|++.|
T Consensus 157 ~~~~~~~~~~~~~~~ 171 (171)
T cd02969 157 VPVPQTPSIGCSIKW 171 (171)
T ss_pred CCccccCCCCcccCC
Confidence 6788777
No 24
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.63 E-value=9.4e-08 Score=66.03 Aligned_cols=52 Identities=37% Similarity=0.563 Sum_probs=44.4
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCC---CCcceEEEEECCCCCEEEEEEccCCCC
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPA---GIPLRGLFIIDPKGVLRQITVNVPRTG 67 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~---G~~~RatFIID~dG~I~~~~~~~~~~~ 67 (116)
+++|++++|+++. ++++||+..... +...|++||||++|+|++++.......
T Consensus 79 ~~~~~~l~D~~~~-~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~ 133 (140)
T cd02971 79 GLNFPLLSDPDGE-FAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTG 133 (140)
T ss_pred CCCceEEECCChH-HHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCC
Confidence 6789999999999 999999986432 456899999999999999998876633
No 25
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.53 E-value=1.5e-07 Score=63.68 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=40.2
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEE
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~ 59 (116)
++++||+++|.+++ ++++||+.........|++||||++|+|+|.
T Consensus 80 ~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 80 YGLPFPVLSDPDGE-LAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HTCSSEEEEETTSH-HHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hccccccccCcchH-HHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 46899999999999 9999999876655678999999999999984
No 26
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.50 E-value=2.1e-07 Score=64.31 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=38.5
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+++++||+++|.++. ++++||+. ..|++||||++|+|++++.+
T Consensus 82 ~~~~~~p~~~D~~~~-~~~~~~v~------~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 82 RYGITYPVANDNDYA-TWRAYGNQ------YWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HcCCCCCEEECCchH-HHHHhCCC------cCCeEEEECCCCcEEEEEec
Confidence 357899999999999 99999986 45999999999999998865
No 27
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.40 E-value=8.2e-07 Score=62.19 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=43.1
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEccCC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNVPR 65 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~~~ 65 (116)
++++|++++|.++. ++++||+.... .|+..|++||||++|+|++++.....
T Consensus 83 ~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 83 YGINFPVLSDPDGA-LAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTTTSEEEEETTSH-HHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred hCCCceEEechHHH-HHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 57899999999999 99999986322 24578999999999999999987655
No 28
>KOG0855|consensus
Probab=98.25 E-value=3e-06 Score=63.98 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=56.1
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccC-CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEP-AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~-~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
+++|||.||||+.++ +-+.+|+.... .|++.|++||+|+.|..+.+.......+-++++ .+.. |.
T Consensus 144 KqnlPYhLLSDpk~e-~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~--a~k~-~~ 209 (211)
T KOG0855|consen 144 KQNLPYHLLSDPKNE-VIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDE--ALKF-LK 209 (211)
T ss_pred hccCCeeeecCcchh-HHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHH--HHHH-Hh
Confidence 479999999999999 99999998643 467999999999998888888777788889999 8877 54
No 29
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=98.22 E-value=4.1e-07 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.684 Sum_probs=19.2
Q ss_pred ccccCCCCCCCCCccCC---hh-hHHHHhh
Q psy11208 87 SVCPANWKPDSPTIKPS---PA-ESKEYFN 112 (116)
Q Consensus 87 ~~~p~~w~~g~~~~~~~---~~-~~~~~~~ 112 (116)
.+|||||+||+++|.|+ .+ ..++|++
T Consensus 10 v~tPanW~pGd~~ivpp~~s~~~a~k~~~~ 39 (40)
T PF10417_consen 10 VATPANWKPGDDVIVPPPVSQEEAKKRFPE 39 (40)
T ss_dssp SBBCTTTCTTSGEBE-TTSSTTHHHHHHHC
T ss_pred cccCcCCCCCCCeEcCCCCCHHHHHHHccC
Confidence 89999999999999655 34 3556653
No 30
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.17 E-value=3.3e-06 Score=62.44 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=38.7
Q ss_pred cccceEE-EEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCC
Q psy11208 14 GTVTAKV-LSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPR 65 (116)
Q Consensus 14 ~~l~fpL-LSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~ 65 (116)
++++|++ ++|.++. +++.||+. ..|+|||||++|+|++.+.+..+
T Consensus 119 ~~~~~~~~~~D~~~~-~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 119 LGNPYALSLFDGDGM-LGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred cCCCCceEEEcCCcc-HHHhcCCC------cCCeEEEECCCceEEEEEecCCC
Confidence 4678884 8999999 99999987 46999999999999999987653
No 31
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.11 E-value=4.7e-06 Score=62.86 Aligned_cols=58 Identities=7% Similarity=0.107 Sum_probs=44.1
Q ss_pred ccceE---EEEeCCChHHHHHhCCCccCCCCcceEE-EEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAK---VLSSRNRREKEDRIGVLIEPAGIPLRGL-FIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fp---LLSD~~~~~vak~yGv~~~~~G~~~Rat-FIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+..|| ++.|.+|. ++++||+. ..|+| ||||++|+|++.+.+..+.. ..++ ++.. |+++
T Consensus 121 ~~~~P~~~vllD~~g~-v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~--~~~l-i~~l 182 (184)
T TIGR01626 121 KKENPWSQVVLDDKGA-VKNAWQLN------SEDSAIIVLDKTGKVKFVKEGALSDS-DIQT--VISL-VNGL 182 (184)
T ss_pred cccCCcceEEECCcch-HHHhcCCC------CCCceEEEECCCCcEEEEEeCCCCHH-HHHH--HHHH-HHHH
Confidence 55677 99999999 99999987 56677 99999999999998765332 3445 5555 5543
No 32
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.1e-06 Score=61.32 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=41.9
Q ss_pred cccc-eEEEEeCCChHHHHHhCCCccCC---CCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVT-AKVLSSRNRREKEDRIGVLIEPA---GIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~-fpLLSD~~~~~vak~yGv~~~~~---G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+++. ...|||+....+.++||+...+. |+..|++||+|.+|+|.|.++.+
T Consensus 97 eGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 97 EGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred cCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccc
Confidence 4443 77899987655999999998765 89999999999999999998754
No 33
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.99 E-value=8.7e-06 Score=59.43 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=37.6
Q ss_pred cccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
++++|+ ++.|++++ ++++||+. ..|++|+||++|+|++.+.+..
T Consensus 114 ~~~~f~~v~~D~~~~-~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~ 158 (173)
T TIGR00385 114 LGNPYQAILIDPNGK-LGLDLGVY------GAPETFLVDGNGVILYRHAGPL 158 (173)
T ss_pred cCCCCceEEECCCCc-hHHhcCCe------eCCeEEEEcCCceEEEEEeccC
Confidence 467887 67899999 99999987 4689999999999999987643
No 34
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.95 E-value=3.5e-05 Score=55.07 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=37.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
.+++|+++.|.++. ++++||+. ..|++||||++|+|++.+.+.
T Consensus 116 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 116 YGLTFPVAIDKGRQ-VIDAYGVG------PLPTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred hCCCceEEECCcch-HHHHcCCC------CcCeEEEECCCCcEEEEEeCC
Confidence 46789999999999 99999986 569999999999999877554
No 35
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.93 E-value=3.8e-06 Score=62.11 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=33.9
Q ss_pred cccceEEEEe--CCChHHHHHhCCCccC-----------CCCc-ceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAKVLSS--RNRREKEDRIGVLIEP-----------AGIP-LRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fpLLSD--~~~~~vak~yGv~~~~-----------~G~~-~RatFIID~dG~I~~~~~~~~ 64 (116)
++++||+++| .++...++.|+.+.+. .+++ .|++||||++|+|++.+....
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~ 168 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKV 168 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCC
Confidence 4789999977 5665124566332111 1333 568999999999999887644
No 36
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.92 E-value=2.3e-05 Score=53.64 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=36.9
Q ss_pred cccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
++++|+ +++|.+++ +++.||+. ..|++|+||++|+|++.+.+..
T Consensus 77 ~~~~~~~~~~D~~~~-~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 77 HGNPYAAVGFDPDGR-VGIDLGVY------GVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred cCCCCceEEECCcch-HHHhcCCC------CCCeEEEECCCceEEEEEeccC
Confidence 355664 67999999 99999997 4699999999999999887654
No 37
>PLN02412 probable glutathione peroxidase
Probab=97.87 E-value=1.2e-05 Score=58.67 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=37.7
Q ss_pred cccceEEEEe--CCC-hHHHHHhCCCccCC------CC-cceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAKVLSS--RNR-REKEDRIGVLIEPA------GI-PLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fpLLSD--~~~-~~vak~yGv~~~~~------G~-~~RatFIID~dG~I~~~~~~~~ 64 (116)
++++||+++| .++ . ++..|+++..+. ++ ..|+|||||++|+|++.+....
T Consensus 92 ~~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~ 151 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT 151 (167)
T ss_pred cCCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC
Confidence 5789999984 665 6 888888654321 12 3699999999999999987544
No 38
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.65 E-value=0.00012 Score=49.52 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=36.6
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++|++++|.+++ +++.|++. ..|++||||++| |+++..+.
T Consensus 71 ~~~~~~~~~d~~~~-~~~~~~i~------~~P~~~vid~~g-i~~~~~g~ 112 (123)
T cd03011 71 KGYGFPVINDPDGV-ISARWGVS------VTPAIVIVDPGG-IVFVTTGV 112 (123)
T ss_pred cCCCccEEECCCcH-HHHhCCCC------cccEEEEEcCCC-eEEEEecc
Confidence 46799999999999 99999987 579999999999 98877643
No 39
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.65 E-value=4.2e-05 Score=54.50 Aligned_cols=61 Identities=13% Similarity=-0.025 Sum_probs=37.1
Q ss_pred cccceEEEEeC-----CChHHHHHhCCCccC-CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 14 GTVTAKVLSSR-----NRREKEDRIGVLIEP-AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 14 ~~l~fpLLSD~-----~~~~vak~yGv~~~~-~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++++||+++|. +.. .+..|++.... .....|+|||||++|+|++.+.... ..++ +.+. |+.
T Consensus 85 ~~~~fp~~~d~~~~~~~~~-~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~----~~~~--l~~~-i~~ 151 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAE-PAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE----PVEE--IRPE-ITA 151 (153)
T ss_pred cCCCCCccceEecCCCCCC-cHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC----CHHH--HHHH-HHH
Confidence 47899999983 223 33344432110 1112678999999999999886543 2345 5555 554
No 40
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.65 E-value=5.7e-05 Score=52.23 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=36.6
Q ss_pred cccceEEEEeCC---ChHHHHHhCCCccCC-------CC-cceEEEEECCCCCEEEEEE
Q psy11208 14 GTVTAKVLSSRN---RREKEDRIGVLIEPA-------GI-PLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 14 ~~l~fpLLSD~~---~~~vak~yGv~~~~~-------G~-~~RatFIID~dG~I~~~~~ 61 (116)
.+.+|++|+|.. +. ++++||+..... ++ ..|++||||++|+|++++.
T Consensus 84 ~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 84 FGPGWIGLTGTPEEIEA-LAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred hCCCcEEEECCHHHHHH-HHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 357899999975 68 999999875421 11 2589999999999999763
No 41
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.60 E-value=0.00014 Score=46.88 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=35.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
.+.+|++++|.+.. +++.||+. ..|++||+|++|+|++.+
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~------~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 75 YGITFPVLLDPDGE-LAKAYGVR------GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred cCCCcceEEcCcch-HHHhcCcC------ccceEEEECCCCcEEEEe
Confidence 35789999999888 99999987 568999999999999865
No 42
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.55 E-value=7.3e-05 Score=53.29 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=34.3
Q ss_pred cccceEEEEeC--CChHHHHHhCCCccC--------CCCcceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAKVLSSR--NRREKEDRIGVLIEP--------AGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fpLLSD~--~~~~vak~yGv~~~~--------~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
.+++||+++|. ++...++.|+++... .+. .|+|||||++|+|++.+.+..
T Consensus 84 ~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 84 YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKW-NFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCcccc-ccEEEEECCCCcEEEEECCCC
Confidence 47899999974 443146677743211 112 569999999999999887654
No 43
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.46 E-value=0.00014 Score=54.06 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=36.3
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
+++|+.+. .+++ +++.||+. ..|++||||++|+|++.. ..+..+++++ +|+.
T Consensus 126 ~~~~~~~~-~~~~-i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~--ll~~ 177 (189)
T TIGR02661 126 ELGGERYV-VSAE-IGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLES--LLEA 177 (189)
T ss_pred CCCcceee-chhH-HHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHH--HHHH
Confidence 45565543 4567 88899885 468999999999999852 2334446666 6665
No 44
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.29 E-value=0.00031 Score=54.77 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=34.7
Q ss_pred cccceEEEEe--CCChHHHHHhCCCccCC----C---CcceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAKVLSS--RNRREKEDRIGVLIEPA----G---IPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fpLLSD--~~~~~vak~yGv~~~~~----G---~~~RatFIID~dG~I~~~~~~~~ 64 (116)
++++||+++| .+|..++..|++..... | ...++|||||++|+|++++....
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~ 221 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT 221 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC
Confidence 5789999964 55632777776531111 1 12578999999999999886543
No 45
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.02 E-value=0.00087 Score=44.66 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=29.0
Q ss_pred ccc-ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 14 GTV-TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 14 ~~l-~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+++ .||++.| +. ++++||+. ..|++||||++|+|++.-
T Consensus 74 ~~~~~~p~~~~--~~-~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 74 HGLEAFPYVLS--AE-LGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred hCCCCCcEEec--HH-HHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 345 3777763 46 88888885 579999999999999853
No 46
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.90 E-value=0.0023 Score=48.20 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=30.0
Q ss_pred ccccceEEEEeC--CC----hHHH--------HHhCCCccCCCC-cceEEEEECCCCCEEEEEEc
Q psy11208 13 EGTVTAKVLSSR--NR----REKE--------DRIGVLIEPAGI-PLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 13 ~~~l~fpLLSD~--~~----~~va--------k~yGv~~~~~G~-~~RatFIID~dG~I~~~~~~ 62 (116)
+++++||+++|. +| . +. ..|++.....++ ..++|||||++|+|++.+..
T Consensus 100 ~~~~~fpvl~d~~v~g~~~~~-l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 100 KNKIKYNFFEPIEVNGENTHE-LFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred HcCCCceeeeeeeccCCccCH-HHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCC
Confidence 357899999973 22 2 22 234332111121 13589999999999987754
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.60 E-value=0.0016 Score=47.34 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=26.7
Q ss_pred EEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEE
Q psy11208 19 KVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 19 pLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~ 59 (116)
|+..+.++. +++.||+. ..|++||||++|+|+..
T Consensus 95 p~~~~~~~~-l~~~y~v~------~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 95 PFEDEFRRE-LEAQFSVE------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred cccchHHHH-HHHHcCCC------CCCEEEEECCCCcEEee
Confidence 344444557 99999986 57999999999999874
No 48
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.44 E-value=0.0061 Score=52.58 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=36.6
Q ss_pred ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
.||++.|.++. +++.||+. ..|++||||++|+|++...+..
T Consensus 120 ~~pV~~D~~~~-lak~fgV~------giPTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 120 KLPVLTDNGGT-LAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred ccceeccccHH-HHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC
Confidence 47899999999 99999997 6799999999999999887654
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.41 E-value=0.0075 Score=45.51 Aligned_cols=45 Identities=2% Similarity=-0.053 Sum_probs=34.6
Q ss_pred ccceEEEEe-CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE-EEEccC
Q psy11208 15 TVTAKVLSS-RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ-ITVNVP 64 (116)
Q Consensus 15 ~l~fpLLSD-~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~-~~~~~~ 64 (116)
.+.||++.| ..+. +.+.||+.. ...|+|||||++|+|++ ++.+..
T Consensus 112 ~~~fPv~~dd~~~~-~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~ 158 (181)
T PRK13728 112 DTAFPEALPAPPDV-MQTFFPNIP----VATPTTFLVNVNTLEALPLLQGAT 158 (181)
T ss_pred CCCCceEecCchhH-HHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCC
Confidence 578999996 5667 888998621 15799999999999975 666544
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.24 E-value=0.0021 Score=44.19 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.4
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
.++|+. +|.... ++++||+. ..|++||||++|+|++..
T Consensus 79 ~~~~~~-~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 79 AVPFSD-RERRSR-LNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred EcccCC-HHHHHH-HHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 344443 455567 89999987 569999999999998643
No 51
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.11 E-value=0.015 Score=53.77 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=38.3
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+.+++||++.|.+++ +++.|++. ..|++||||++|+|++.....
T Consensus 479 ~~~i~~pvv~D~~~~-~~~~~~V~------~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 479 RYNISHPVVNDGDMY-LWRELGVS------SWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred HhCCCccEEECCchH-HHHhcCCC------ccceEEEECCCCeEEEEEecc
Confidence 357889999999999 99999987 579999999999999986553
No 52
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=95.11 E-value=0.06 Score=36.43 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=37.8
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC----------------------CC----------CcceEEEEECCCCCEEEEEE
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP----------------------AG----------IPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~----------------------~G----------~~~RatFIID~dG~I~~~~~ 61 (116)
...+|+|.+|++++ +-+++|+.... .+ .-.-++||+|++|+|+|.|+
T Consensus 34 ~~~p~~ly~D~~~~-lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 34 TGFPFPLYVDPERK-LYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred cCCCCcEEEeCcHH-HHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 57799999999999 99999987520 01 12457999999999999886
Q ss_pred c
Q psy11208 62 N 62 (116)
Q Consensus 62 ~ 62 (116)
.
T Consensus 113 ~ 113 (115)
T PF13911_consen 113 D 113 (115)
T ss_pred c
Confidence 4
No 53
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=93.62 E-value=0.12 Score=35.61 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+++.||+. ..|+++|||++|+|++..
T Consensus 91 ~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 91 LEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 77778876 579999999999998744
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=93.25 E-value=0.023 Score=36.62 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=21.1
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
.... +.+.|++. ..|+++|||++|+|
T Consensus 70 ~~~~-l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 NNSE-LLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHH-HHHHTT-T------SSSEEEEEETTSBE
T ss_pred hHHH-HHHHCCCC------cCCEEEEECCCCCC
Confidence 3456 88999887 57999999999987
No 55
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=91.95 E-value=0.2 Score=37.28 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=39.4
Q ss_pred ccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 15 TVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 15 ~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
..|.. ++.|.+|. +.++|++..+ .-+.+|+|++|+|+++..+.++.. .+++ ++..
T Consensus 101 ~~p~s~~vlD~~G~-~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls~~-Ev~q--Vi~L 156 (160)
T PF09695_consen 101 EFPWSQFVLDSNGV-VRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALSPA-EVQQ--VIAL 156 (160)
T ss_pred hCCCcEEEEcCCCc-eeccccCCCC-----CceEEEEcCCccEEEEECCCCCHH-HHHH--HHHH
Confidence 34444 67999999 9999998743 345889999999999887665332 3455 4444
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=91.93 E-value=0.27 Score=35.74 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=15.8
Q ss_pred cceEEEEECCCCCEEE-EEEcc
Q psy11208 43 PLRGLFIIDPKGVLRQ-ITVNV 63 (116)
Q Consensus 43 ~~RatFIID~dG~I~~-~~~~~ 63 (116)
..|++||||++|.+++ +..+.
T Consensus 118 ~iPTt~LID~~G~~i~~~~~G~ 139 (153)
T TIGR02738 118 VTPATFLVNVNTRKAYPVLQGA 139 (153)
T ss_pred CCCeEEEEeCCCCEEEEEeecc
Confidence 6799999999988644 55543
No 57
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=91.59 E-value=0.56 Score=36.95 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=41.5
Q ss_pred cccceEEEEeC-CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSR-NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~-~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+...+|++.|. ++. ..++||++ +.|-.+ |. +|+|.|.- .+-+.+-+.+| +-+. |+.+
T Consensus 179 ~~~~~pi~vD~mdN~-~~~~YgA~------PeRlyI-i~-~gkv~Y~G-g~GP~~y~~~e--~r~~-L~~~ 236 (237)
T PF00837_consen 179 EFPQCPIVVDTMDNN-FNKAYGAL------PERLYI-IQ-DGKVVYKG-GPGPFGYSPEE--LREW-LEKY 236 (237)
T ss_pred hCCCCCEEEEccCCH-HHHHhCCC------cceEEE-EE-CCEEEEeC-CCCCCcCCHHH--HHHH-HHhc
Confidence 34678999998 555 99999998 667554 43 89999855 33355668888 7777 7654
No 58
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.87 Score=33.98 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=37.1
Q ss_pred ceEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccC
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~ 64 (116)
+..+|+|.+++ +.|+.|+.... .|. .-|...||. ||+|.+.++.++
T Consensus 99 ~I~fi~Dg~ge-FTk~~Gm~~d~~~~g~G~RS~RYsmvV~-nGvV~~~~iE~p 149 (165)
T COG0678 99 NIKFIPDGNGE-FTKAMGMLVDKSDLGFGVRSWRYSMVVE-NGVVEKLFIEPP 149 (165)
T ss_pred cEEEecCCCch-hhhhcCceeecccCCcceeeeeEEEEEe-CCeEEEEEecCC
Confidence 56779999999 99999988654 232 568899995 899999998663
No 59
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=89.69 E-value=0.65 Score=30.49 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+++.||+. ..|+.+++|++|++.+...+-
T Consensus 74 l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~ 102 (112)
T PF13098_consen 74 LAQRYGVN------GTPTIVFLDKDGKIVYRIPGY 102 (112)
T ss_dssp HHHHTT--------SSSEEEECTTTSCEEEEEESS
T ss_pred HHHHcCCC------ccCEEEEEcCCCCEEEEecCC
Confidence 88888887 579999999999998776543
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=89.12 E-value=1.4 Score=31.14 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+++.|++. ..|+++++|++|+++....+.
T Consensus 68 ~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 68 EIDRYRVD------GIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HHHHcCCC------CCCEEEEECCCCCEEEEEeCC
Confidence 88999987 579999999999999877653
No 61
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=88.95 E-value=0.75 Score=31.13 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=25.3
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECCC-CCEEEEEEcc
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDPK-GVLRQITVNV 63 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~d-G~I~~~~~~~ 63 (116)
.. ++++|++. ..|+++++|++ |++.....+.
T Consensus 74 ~~-l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 74 KE-LARKYRVR------FTPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred HH-HHHHcCCc------cccEEEEEcCCCCceeEEecCC
Confidence 45 89999987 57999999999 8998766543
No 62
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=85.08 E-value=1.4 Score=34.73 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=29.8
Q ss_pred cceEEEEeC--CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 16 VTAKVLSSR--NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 16 l~fpLLSD~--~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
-.|-+..+. ... +-+..|+.+...| .+||||++|+|||.-.+.
T Consensus 192 ~~Yf~~~~~~~~~~-iRe~Lgi~N~~~G----YvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 192 DRYFIVYRGQLSDD-IREALGINNSYVG----YVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred ceEEEEeCCcccHH-HHHHhCCCCCCcC----eEEEECCCCeEEeCccCC
Confidence 345444432 335 8888998866544 499999999999976543
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=81.35 E-value=1.7 Score=34.37 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=24.7
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECC-CCCEEEEEEcc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDP-KGVLRQITVNV 63 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~-dG~I~~~~~~~ 63 (116)
+.+.. +++.|||. ..|++||+|+ .|+|..+..+.
T Consensus 216 ~~d~~-la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~ 250 (271)
T TIGR02740 216 RPDAG-QAQQLKIR------TVPAVFLADPDPNQFTPIGFGV 250 (271)
T ss_pred cCCHH-HHHHcCCC------cCCeEEEEECCCCEEEEEEeCC
Confidence 34556 88999986 5799999999 46665555443
No 64
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=81.15 E-value=3.4 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=30.7
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECC-CCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDP-KGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~-dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.++++.|++. ..|+.++||+ +|++.+...+.. ..++ .+.. |+.
T Consensus 65 ~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~----~~~~--f~~~-L~~ 109 (114)
T cd02958 65 GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNI----TPED--LLSQ-LIE 109 (114)
T ss_pred HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCC----CHHH--HHHH-HHH
Confidence 33388888876 5799999999 899988665433 3445 5555 443
No 65
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=79.87 E-value=5.8 Score=27.77 Aligned_cols=37 Identities=8% Similarity=-0.095 Sum_probs=25.8
Q ss_pred cceEEEEECCCCCEEEEEEccCCC----CCCccHHHHHHHHHhh
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRT----GKTLFGYFTIRSVISS 82 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~----~r~~~e~~iL~~~l~~ 82 (116)
..|+++++|++|++.+....-.+. +..+.. +|+. |+.
T Consensus 80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~ 120 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKT--VLEK-IRE 120 (124)
T ss_pred CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHH--HHHH-HHH
Confidence 569999999999999988654322 224566 6666 543
No 66
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=79.53 E-value=5 Score=30.42 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=32.6
Q ss_pred ChHHHHHhCCCccC---CC----C--cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 26 RREKEDRIGVLIEP---AG----I--PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 26 ~~~vak~yGv~~~~---~G----~--~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+ ++++|+|+... .+ . -.-..|+||++|++......... .++ +++. |+.+
T Consensus 145 ~~-~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~--i~~~-l~~l 203 (207)
T COG1999 145 EE-VAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEE--IAAD-LKKL 203 (207)
T ss_pred HH-HHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHH--HHHH-HHHH
Confidence 35 88999988411 10 1 12457899999999986644322 577 7777 6654
No 67
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=78.34 E-value=5.5 Score=29.95 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=37.7
Q ss_pred EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 20 VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 20 LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++-|.+|- +-.+|++..+ .-+.+|+|++|+|.++.-+..+. ..+++ ++.. |..+
T Consensus 129 ~vlD~~gv-ak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt~-aevQ~--Vi~l-l~~l 182 (184)
T COG3054 129 FVLDSNGV-AKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALTQ-AEVQQ--VIDL-LQKL 182 (184)
T ss_pred eEEccchh-hhhhhccccc-----cceEEEEcCCCcEEEEecCCccH-HHHHH--HHHH-HHHh
Confidence 56777775 4448988753 36789999999999988665433 35677 7666 5544
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=76.74 E-value=5.8 Score=25.15 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 20 VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 20 LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
+=.|.... +++.|++. ..|++++++ +|+++....
T Consensus 50 vd~~~~~~-l~~~~~i~------~~Pt~~~~~-~g~~~~~~~ 83 (96)
T cd02956 50 VNCDAQPQ-IAQQFGVQ------ALPTVYLFA-AGQPVDGFQ 83 (96)
T ss_pred EeccCCHH-HHHHcCCC------CCCEEEEEe-CCEEeeeec
Confidence 33566667 99999997 579999997 898876543
No 69
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=74.98 E-value=6.1 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=25.3
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
++.|-.+. |.+.. +++.|++. ..|+.++++++|.
T Consensus 49 ~~~~~~v~~~~~~~-~~~~~~i~------~~Pt~~~~~~~~~ 83 (101)
T cd02961 49 KVVVAKVDCTANND-LCSEYGVR------GYPTIKLFPNGSK 83 (101)
T ss_pred ceEEEEeeccchHH-HHHhCCCC------CCCEEEEEcCCCc
Confidence 45665553 44567 99999996 5799999998863
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=74.03 E-value=12 Score=24.35 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=31.9
Q ss_pred cceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|..+.-.+.+ ++++|++. ..| ||++-++|++.....+. +..+ ++.. |++|
T Consensus 51 ~~~~~vd~d~~~-~~~~~~v~------~~P-t~~~~~~g~~~~~~~G~-----~~~~--~~~~-i~~~ 102 (102)
T cd02948 51 LHFATAEADTID-TLKRYRGK------CEP-TFLFYKNGELVAVIRGA-----NAPL--LNKT-ITEL 102 (102)
T ss_pred EEEEEEeCCCHH-HHHHcCCC------cCc-EEEEEECCEEEEEEecC-----ChHH--HHHH-HhhC
Confidence 444443222456 99999987 456 56666799888766542 3455 6666 6543
No 71
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=72.91 E-value=3.9 Score=26.58 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=23.3
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECC-CCCEEEEEE
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDP-KGVLRQITV 61 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~-dG~I~~~~~ 61 (116)
.. ++++|++. ..|+++++++ +|++.....
T Consensus 62 ~~-~~~~~~i~------~~Pti~~~~~~~g~~~~~~~ 91 (104)
T cd02953 62 TA-LLKRFGVF------GPPTYLFYGPGGEPEPLRLP 91 (104)
T ss_pred HH-HHHHcCCC------CCCEEEEECCCCCCCCcccc
Confidence 35 88999987 6799999998 898776553
No 72
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=72.88 E-value=7.7 Score=27.07 Aligned_cols=53 Identities=4% Similarity=0.053 Sum_probs=33.5
Q ss_pred ccceEE-EEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAKV-LSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fpL-LSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++.|-- =.|.+.+ +|..||+. ..|+.+++ ++|+++. ..+. +..++ +.+. |+.|
T Consensus 65 ~v~~~kVD~d~~~~-La~~~~I~------~iPTl~lf-k~G~~v~-~~G~----~~~~~--l~~~-l~~~ 118 (120)
T cd03065 65 GIGFGLVDSKKDAK-VAKKLGLD------EEDSIYVF-KDDEVIE-YDGE----FAADT--LVEF-LLDL 118 (120)
T ss_pred CCEEEEEeCCCCHH-HHHHcCCc------cccEEEEE-ECCEEEE-eeCC----CCHHH--HHHH-HHHH
Confidence 345433 3455667 99999998 56888888 5898765 4332 23455 6565 6544
No 73
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=72.18 E-value=11 Score=22.85 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=24.5
Q ss_pred ceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 44 LRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
..-.|.||++|.|..+.+...+....+++ -++++ ++.+.
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~-~a~~a-v~~~~ 50 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDR-AALEA-VRKAR 50 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHH-HHHHH-HHhCC
Confidence 57789999999999888754322222332 15555 65554
No 74
>KOG0541|consensus
Probab=71.80 E-value=6.8 Score=29.43 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=36.0
Q ss_pred ceEEEEeCCChHHHHHhCCCccC--C--C-CcceEEEEECCCCCEEEEEEccCC
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEP--A--G-IPLRGLFIIDPKGVLRQITVNVPR 65 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~--~--G-~~~RatFIID~dG~I~~~~~~~~~ 65 (116)
...+++|++|+ +.+.+|+.... . | -..|...+++ ||+|.+..+.+.+
T Consensus 105 ~V~f~aD~~g~-ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~g 156 (171)
T KOG0541|consen 105 HVKFVADPAGE-FTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEGG 156 (171)
T ss_pred eEEEEecCCCc-eeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccCC
Confidence 45679999999 99999987542 1 2 2578888996 8999998876543
No 75
>PRK09381 trxA thioredoxin; Provisional
Probab=70.87 E-value=11 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=25.5
Q ss_pred EEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 21 LSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 21 LSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
-.|.... +++.|++. ..|+++++ ++|++++...+.
T Consensus 60 d~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~ 94 (109)
T PRK09381 60 NIDQNPG-TAPKYGIR------GIPTLLLF-KNGEVAATKVGA 94 (109)
T ss_pred ECCCChh-HHHhCCCC------cCCEEEEE-eCCeEEEEecCC
Confidence 3455566 88999987 57888888 699998866543
No 76
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=70.24 E-value=6.6 Score=26.51 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=21.6
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCC
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPK 53 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~d 53 (116)
+.|..+ .|.+.+ ++++||+. ..|++++.+..
T Consensus 54 i~~~~vd~d~~~~-l~~~~~v~------~vPt~~i~~~g 85 (113)
T cd02975 54 LKLEIYDFDEDKE-KAEKYGVE------RVPTTIFLQDG 85 (113)
T ss_pred eEEEEEeCCcCHH-HHHHcCCC------cCCEEEEEeCC
Confidence 445444 455566 99999988 56888888653
No 77
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.28 E-value=9.4 Score=28.47 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.0
Q ss_pred EEEEECCCCCEEEEEE
Q psy11208 46 GLFIIDPKGVLRQITV 61 (116)
Q Consensus 46 atFIID~dG~I~~~~~ 61 (116)
+-|+||++|+++..+.
T Consensus 148 ~KFLv~~~G~vv~r~~ 163 (183)
T PRK10606 148 EKFLVGRDGQVIQRFS 163 (183)
T ss_pred EEEEECCCCcEEEEEC
Confidence 3799999999999874
No 78
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=67.57 E-value=29 Score=23.93 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=42.9
Q ss_pred cCCccccccceEEEEeCCCh------------HHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHH
Q psy11208 8 KGGLIEGTVTAKVLSSRNRR------------EKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFT 75 (116)
Q Consensus 8 ~~~~~~~~l~fpLLSD~~~~------------~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~i 75 (116)
.+++.+.++-.-.+.+.... ++-+.|++-. ..-+.++|++||.+...+..+. +..+ +
T Consensus 36 ~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~--l 104 (118)
T PF13778_consen 36 RCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEE--L 104 (118)
T ss_pred hhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHH--H
Confidence 57776677765555554331 2556666541 2356899999999988754332 4677 8
Q ss_pred HHHHHhhhCc
Q psy11208 76 IRSVISSFGL 85 (116)
Q Consensus 76 L~~~l~~l~~ 85 (116)
.+. |+++..
T Consensus 105 f~~-ID~MPm 113 (118)
T PF13778_consen 105 FDT-IDAMPM 113 (118)
T ss_pred HHH-HhCCcc
Confidence 888 888754
No 79
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=66.84 E-value=12 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=24.4
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
...-.|.||++|.|..+.+........+++ -++++ ++.
T Consensus 17 ~v~v~~~I~~~G~v~~~~v~~s~~~~~l~~-~a~~~-v~~ 54 (79)
T PF03544_consen 17 TVVVEFTIDPDGRVSDVRVIQSSGPPILDE-AALRA-VKK 54 (79)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSSSCSHH-HHHHH-HCC
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCHHHHHH-HHHHH-HHh
Confidence 357799999999999988755333222433 14455 544
No 80
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=65.76 E-value=18 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=26.0
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
++.|.-+ .|.+.. ++++||+. ..|+++++. +|++....
T Consensus 57 ~v~~~~vd~d~~~~-l~~~~~V~------~~Pt~~i~~-~g~~~~~~ 95 (111)
T cd02963 57 GVGIATVNAGHERR-LARKLGAH------SVPAIVGII-NGQVTFYH 95 (111)
T ss_pred CceEEEEeccccHH-HHHHcCCc------cCCEEEEEE-CCEEEEEe
Confidence 3443333 355667 99999997 678999995 88775543
No 81
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=65.76 E-value=18 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.6
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
.|.+.. +++.|++. ..|+++++ ++|++
T Consensus 57 ~~~~~~-~~~~~~i~------~~Pt~~~~-~~g~~ 83 (101)
T cd02994 57 VTQEPG-LSGRFFVT------ALPTIYHA-KDGVF 83 (101)
T ss_pred ccCCHh-HHHHcCCc------ccCEEEEe-CCCCE
Confidence 455567 99999987 56888876 78986
No 82
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=65.07 E-value=29 Score=21.46 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=26.1
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
+.|-.+ .|.+.. +++.||+. ..|+.+++ ++|++.+...
T Consensus 47 ~~~~~vd~~~~~~-~~~~~~v~------~~P~~~~~-~~g~~~~~~~ 85 (101)
T TIGR01068 47 VKFVKLNVDENPD-IAAKYGIR------SIPTLLLF-KNGKEVDRSV 85 (101)
T ss_pred eEEEEEECCCCHH-HHHHcCCC------cCCEEEEE-eCCcEeeeec
Confidence 444333 345566 89999987 57999999 5788765443
No 83
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=64.40 E-value=17 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=22.6
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
..+.|++. |...|+++++|++|++.......
T Consensus 66 ~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~~ 96 (117)
T cd02959 66 KDEEFSPD----GGYIPRILFLDPSGDVHPEIINK 96 (117)
T ss_pred hhhhcccC----CCccceEEEECCCCCCchhhccC
Confidence 55677654 32479999999999998865443
No 84
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=63.82 E-value=11 Score=24.62 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=21.0
Q ss_pred hHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 27 REKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 27 ~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
. +++.|+|. ..|+ |++-++|+++..+.+
T Consensus 62 ~-l~~~~~V~------~~Pt-~~~~~~G~~v~~~~G 89 (103)
T cd02985 62 E-LCRREKII------EVPH-FLFYKDGEKIHEEEG 89 (103)
T ss_pred H-HHHHcCCC------cCCE-EEEEeCCeEEEEEeC
Confidence 5 89999987 4565 566689999876654
No 85
>smart00594 UAS UAS domain.
Probab=62.79 E-value=19 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.3
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKG 54 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG 54 (116)
+|..++..|++. ..|+..|+|++|
T Consensus 74 eg~~l~~~~~~~------~~P~~~~l~~~~ 97 (122)
T smart00594 74 EGQRVSQFYKLD------SFPYVAIVDPRT 97 (122)
T ss_pred hHHHHHHhcCcC------CCCEEEEEecCC
Confidence 344488998886 579999999997
No 86
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=62.44 E-value=12 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.5
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
+.. +++.|++. ..|+.+++++.+.
T Consensus 63 ~~~-~~~~~~i~------~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 NKP-LCGKYGVQ------GFPTLKVFRPPKK 86 (109)
T ss_pred cHH-HHHHcCCC------cCCEEEEEeCCCc
Confidence 456 99999987 5799999998773
No 87
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=62.34 E-value=27 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=21.4
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
.|.+.. +++.|++. ..|+.|++++++.
T Consensus 55 ~~~~~~-~~~~~~i~------~~P~~~~~~~~~~ 81 (102)
T TIGR01126 55 ATAEKD-LASRFGVS------GFPTIKFFPKGKK 81 (102)
T ss_pred ccchHH-HHHhCCCC------cCCEEEEecCCCc
Confidence 344556 99999987 5789999998876
No 88
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=59.50 E-value=26 Score=22.01 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.1
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
|.+.. +++.|++. ..|+.+++ ++|+....+.+
T Consensus 60 ~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 60 TQHRE-LCSEFQVR------GYPTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred CCChh-hHhhcCCC------cCCEEEEE-eCCCeeeEeeC
Confidence 44556 99999986 56888888 68887655544
No 89
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=59.16 E-value=9 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=23.0
Q ss_pred ChHHHHHhCCCccC------C--C--CcceEEEEECCCCCEEEEEE
Q psy11208 26 RREKEDRIGVLIEP------A--G--IPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 26 ~~~vak~yGv~~~~------~--G--~~~RatFIID~dG~I~~~~~ 61 (116)
.+ +++.|++.... . + .-.-.+|||||+|+|+.++.
T Consensus 128 ~~-l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 128 EE-LAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HH-HHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HH-HHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 35 88888876421 0 1 12357999999999998773
No 90
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=58.51 E-value=13 Score=32.38 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=31.3
Q ss_pred hHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 27 REKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 27 ~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+ ++++||+. ..|+++++|++|+++...... -..+.++ .++. ++.++
T Consensus 525 ~-l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~--G~~~~~~--f~~~-L~~~~ 570 (571)
T PRK00293 525 A-LLKHYNVL------GLPTILFFDAQGQEIPDARVT--GFMDAAA--FAAH-LRQLQ 570 (571)
T ss_pred H-HHHHcCCC------CCCEEEEECCCCCCccccccc--CCCCHHH--HHHH-HHHhc
Confidence 5 88999987 569999999999985322211 1234566 6777 77654
No 91
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=58.02 E-value=26 Score=25.13 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=33.8
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.. ++..|||. ..|+.+++ ++|++.....+. ++-++ +++. |+.+
T Consensus 70 v~~akVDiD~~~~-LA~~fgV~------siPTLl~F-kdGk~v~~i~G~----~~k~~--l~~~-I~~~ 123 (132)
T PRK11509 70 WQVAIADLEQSEA-IGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAE--LINL-MRGL 123 (132)
T ss_pred eEEEEEECCCCHH-HHHHcCCc------cCCEEEEE-ECCEEEEEEeCc----CCHHH--HHHH-HHHH
Confidence 444443 344556 99999998 56777777 689888766543 22355 5565 5554
No 92
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=55.62 E-value=16 Score=29.43 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=39.5
Q ss_pred cccceEEEEeCCCh------------HHHHHhCCC-cc-CCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHH
Q psy11208 14 GTVTAKVLSSRNRR------------EKEDRIGVL-IE-PAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV 79 (116)
Q Consensus 14 ~~l~fpLLSD~~~~------------~vak~yGv~-~~-~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~ 79 (116)
++--|.+|.+.... ++...|.+. ++ ..|.+-=.||+|+.+|+|-. ...+++..+ +-..
T Consensus 187 hGY~frIL~~qG~~ApGGa~~Yvv~G~M~~GfalvAwPa~YG~TGVmtF~Vn~~g~VYq-----kDLG~~t~~--~A~a- 258 (271)
T PF11453_consen 187 HGYRFRILTAQGPHAPGGAYDYVVNGKMIGGFALVAWPAEYGETGVMTFMVNQDGQVYQ-----KDLGPDTAA--KAAA- 258 (271)
T ss_pred cceEEEEccCCCCCCCCcccceeeccccccceEEEEeehhhCCCceEEEEECCCCcEEe-----cccCcchHH--Hhhh-
Confidence 67788888876432 033334332 11 12333346999999999854 335555555 5555
Q ss_pred HhhhCcCccccC-CCCC
Q psy11208 80 ISSFGLFSVCPA-NWKP 95 (116)
Q Consensus 80 l~~l~~~~~~p~-~w~~ 95 (116)
++.+. |- +|++
T Consensus 259 i~~Fd-----Pd~~W~~ 270 (271)
T PF11453_consen 259 ITSFD-----PDDGWQK 270 (271)
T ss_pred hhccC-----CCCCCcC
Confidence 66655 54 6654
No 93
>KOG1651|consensus
Probab=55.44 E-value=16 Score=27.47 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=15.0
Q ss_pred eEEEEECCCCCEEEEEEc
Q psy11208 45 RGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~ 62 (116)
=+=|+||++|.|+..+..
T Consensus 137 F~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 137 FTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred eEEEeECCCCcEEEeeCC
Confidence 357999999999998853
No 94
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=55.28 E-value=21 Score=22.32 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=23.5
Q ss_pred CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 41 GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 41 G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+......|-||++|+|..+.+...+....+++ -++++ |++.+
T Consensus 25 ~~~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~-av~~a-i~~~~ 66 (85)
T PF13103_consen 25 GLSVTVRITIDPDGRVISVRIVKSSGNPAFDA-AVRRA-IRRAS 66 (85)
T ss_dssp T--EEEEEEE-TTSBEEEEEEEE--S-HHHHH-HHHHH-HHHH-
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCCHHHHH-HHHHH-HHHcC
Confidence 45678899999999997766654444444554 24455 66554
No 95
>PRK10996 thioredoxin 2; Provisional
Probab=55.25 E-value=38 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=23.6
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.|.+.. ++++|++. ..|+.+++ ++|++.....+
T Consensus 92 ~~~~~~-l~~~~~V~------~~Ptlii~-~~G~~v~~~~G 124 (139)
T PRK10996 92 TEAERE-LSARFRIR------SIPTIMIF-KNGQVVDMLNG 124 (139)
T ss_pred CCCCHH-HHHhcCCC------ccCEEEEE-ECCEEEEEEcC
Confidence 344567 99999997 45777666 58998876544
No 96
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=53.08 E-value=23 Score=22.66 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.+.+ +++.||+. ..|+.++++ +|++.....+
T Consensus 55 ~~~~-l~~~~~v~------~vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 55 EDQE-IAEAAGIM------GTPTVQFFK-DKELVKEISG 85 (97)
T ss_pred CCHH-HHHHCCCe------eccEEEEEE-CCeEEEEEeC
Confidence 3446 99999986 568999995 7888765543
No 97
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=53.05 E-value=19 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.6
Q ss_pred cceEEEEECCCCCEEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~ 61 (116)
+.|-+|.+|.+|+|..+..
T Consensus 41 ~dRLnv~~D~~g~I~~v~C 59 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRVRC 59 (60)
T ss_pred CCcEEEEECCCCcEEEEec
Confidence 6799999999999988753
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=52.47 E-value=26 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.1
Q ss_pred ccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEE
Q psy11208 15 TVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57 (116)
Q Consensus 15 ~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~ 57 (116)
.+.|. +=+|.+.. ++++||+. ..|+.++. ++|++.
T Consensus 56 ~~~~~~vd~d~~~~-l~~~~~v~------~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 56 KVVWGKVDCDKESD-IADRYRIN------KYPTLKLF-RNGMMM 91 (108)
T ss_pred cEEEEEEECCCCHH-HHHhCCCC------cCCEEEEE-eCCcCc
Confidence 35554 33677778 99999997 57888888 688854
No 99
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=50.76 E-value=31 Score=26.51 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=27.1
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
..+-.|.||++|.|.-+.+...+..+.+| +-+|++ ++.+.
T Consensus 181 ~V~V~f~i~~~G~v~~v~v~~SSg~~~lD-~aal~a-ir~~~ 220 (244)
T COG0810 181 TVKVKFTIDPDGNVTNVRVLKSSGSPALD-RAALEA-IRKWR 220 (244)
T ss_pred eEEEEEEECCCCCEeeeEEeecCCcHHHH-HHHHHH-HHHhc
Confidence 46889999999999998876543333333 235566 66655
No 100
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=50.59 E-value=20 Score=25.76 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=26.4
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+++|-+.-|.+-+ -..+|.-. |++..-+|+||+.|.|..
T Consensus 118 ~~~f~~~~gn~~~-D~~~y~~~----gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 118 GNPFYAGFGNRIT-DVISYSAV----GIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred CCCEEEEeCCCch-hHHHHHHc----CCChhhEEEECCCCcccc
Confidence 4556554553344 56666433 778888999999999863
No 101
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=48.56 E-value=30 Score=24.05 Aligned_cols=38 Identities=5% Similarity=-0.083 Sum_probs=28.0
Q ss_pred EEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 19 KVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 19 pLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
.+=.|.+.. ++..|||. ..|+.+++ ++|++..+..+..
T Consensus 51 kVDvD~~~~-la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~ 88 (114)
T cd02954 51 LVDIDEVPD-FNKMYELY------DPPTVMFF-FRNKHMKIDLGTG 88 (114)
T ss_pred EEECCCCHH-HHHHcCCC------CCCEEEEE-ECCEEEEEEcCCC
Confidence 334556667 99999998 56776666 6899999887643
No 102
>PTZ00051 thioredoxin; Provisional
Probab=47.22 E-value=47 Score=20.79 Aligned_cols=40 Identities=5% Similarity=0.095 Sum_probs=26.1
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
++.|-.+- |.... +++.|++. ..|+ |++-++|++.....+
T Consensus 49 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt-~~~~~~g~~~~~~~G 89 (98)
T PTZ00051 49 KMVFVKVDVDELSE-VAEKENIT------SMPT-FKVFKNGSVVDTLLG 89 (98)
T ss_pred CcEEEEEECcchHH-HHHHCCCc------eeeE-EEEEeCCeEEEEEeC
Confidence 34553332 23346 99999997 4576 455589999887765
No 103
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=47.08 E-value=45 Score=20.81 Aligned_cols=31 Identities=3% Similarity=0.135 Sum_probs=22.5
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
...+ +++.|++. ..|+.++++ +|++.....+
T Consensus 56 ~~~~-~~~~~~i~------~~Pt~~~~~-~g~~~~~~~g 86 (97)
T cd02984 56 ELPE-ISEKFEIT------AVPTFVFFR-NGTIVDRVSG 86 (97)
T ss_pred cCHH-HHHhcCCc------cccEEEEEE-CCEEEEEEeC
Confidence 3456 89999987 468877774 8988765543
No 104
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=46.68 E-value=19 Score=22.29 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=13.4
Q ss_pred eEEEEECCCCCEEEEE
Q psy11208 45 RGLFIIDPKGVLRQIT 60 (116)
Q Consensus 45 RatFIID~dG~I~~~~ 60 (116)
=+.|++|++|+|.++-
T Consensus 12 ~~i~~~d~~g~I~~~N 27 (113)
T PF00989_consen 12 DGIFVIDEDGRILYVN 27 (113)
T ss_dssp SEEEEEETTSBEEEEC
T ss_pred ceEEEEeCcCeEEEEC
Confidence 4689999999999854
No 105
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=46.56 E-value=43 Score=23.22 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.0
Q ss_pred EEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 19 KVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 19 pLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.+-.|.+.. ++..|+|. ..|+..++ ++|++.....+
T Consensus 66 kVdid~~~~-la~~f~V~------sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 66 VVGRADEQA-LAARFGVL------RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred EEECCCCHH-HHHHcCCC------cCCEEEEE-ECCEEEEEEeC
Confidence 444555667 99999998 55766666 68998887655
No 106
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=45.64 E-value=24 Score=22.56 Aligned_cols=34 Identities=0% Similarity=-0.101 Sum_probs=24.3
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.|.+.+ +++.||+. ..|+.+++.+.|...+.+.+
T Consensus 59 ~~~~~~-~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 59 CQKYES-LCQQANIR------AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred CCchHH-HHHHcCCC------cccEEEEEcCCCCCceEccC
Confidence 345556 99999987 57899999766576665543
No 107
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=45.60 E-value=40 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
|.+.. ++++|++. ..|++++++ +|++..
T Consensus 93 ~~~~~-l~~~~~I~------~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 93 TRALN-LAKRFAIK------GYPTLLLFD-KGKMYQ 120 (224)
T ss_pred cccHH-HHHHcCCC------cCCEEEEEE-CCEEEE
Confidence 44556 99999987 579999998 787654
No 108
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=20 Score=26.77 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=29.2
Q ss_pred ccccceEEEEe--CCChHHHHHhCCCccCC-----C---CcceEEEEECCCCCEEEEEE
Q psy11208 13 EGTVTAKVLSS--RNRREKEDRIGVLIEPA-----G---IPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 13 ~~~l~fpLLSD--~~~~~vak~yGv~~~~~-----G---~~~RatFIID~dG~I~~~~~ 61 (116)
.++++||+++= .+|.+..=.|--+.... | .-.=+-|+||++|.|+..+.
T Consensus 86 ~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 86 NYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred ccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 36889999874 35542222222211111 1 12346799999999999885
No 109
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=45.31 E-value=21 Score=22.00 Aligned_cols=15 Identities=40% Similarity=0.882 Sum_probs=11.9
Q ss_pred EEEEECCCCCEEEEE
Q psy11208 46 GLFIIDPKGVLRQIT 60 (116)
Q Consensus 46 atFIID~dG~I~~~~ 60 (116)
..+++|++|+|.+.-
T Consensus 7 ~i~v~D~~~~i~~~N 21 (110)
T PF08448_consen 7 GIFVIDPDGRIVYAN 21 (110)
T ss_dssp EEEEEETTSBEEEE-
T ss_pred eeEEECCCCEEEEEH
Confidence 478999999998754
No 110
>PRK10819 transport protein TonB; Provisional
Probab=42.40 E-value=48 Score=25.99 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=26.1
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCC-ccHHHHHHHHHhhhC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKT-LFGYFTIRSVISSFG 84 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~-~~e~~iL~~~l~~l~ 84 (116)
...-.|.||++|.|..+.+... .+.. +++ -++++ ++.+.
T Consensus 182 ~V~V~f~I~~~G~V~~v~V~~S-sg~~~fD~-aal~A-vr~wr 221 (246)
T PRK10819 182 QVKVKFDVDEDGRVDNVRILSA-EPRNMFER-EVKQA-MRKWR 221 (246)
T ss_pred EEEEEEEECCCCCEEEEEEecc-CChHHHHH-HHHHH-HHhcC
Confidence 3577899999999999887443 2322 332 26666 76665
No 111
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=42.19 E-value=25 Score=21.29 Aligned_cols=15 Identities=40% Similarity=0.957 Sum_probs=12.1
Q ss_pred EEEEECCCCCEEEEE
Q psy11208 46 GLFIIDPKGVLRQIT 60 (116)
Q Consensus 46 atFIID~dG~I~~~~ 60 (116)
+.|++|++|+|.++-
T Consensus 3 ~i~i~d~~g~i~~~N 17 (104)
T PF13426_consen 3 GIFILDPDGRILYVN 17 (104)
T ss_dssp EEEEEETTSBEEEE-
T ss_pred EEEEECCcCcEEehh
Confidence 479999999998754
No 112
>PLN00115 pollen allergen group 3; Provisional
Probab=40.48 E-value=15 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=9.8
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|+||++|+
T Consensus 100 nViPa~Wk~G~ 110 (118)
T PLN00115 100 DVIPESFKAGS 110 (118)
T ss_pred ceECCCCCCCC
Confidence 78899999986
No 113
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=40.46 E-value=1.1e+02 Score=23.82 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=44.8
Q ss_pred ceEEEEeCCChHHHHHhCCCccC-CCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcCccccCCCCC
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEP-AGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFSVCPANWKP 95 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~-~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~~~~p~~w~~ 95 (116)
.||.+|..+.. +...|++...+ ...+.=++|+-|. |+|.+.+.. ..|..+. +.-. ...|. +.|.+.+.
T Consensus 130 ~~pw~Ss~gs~-Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst---~~RG~e~--l~~~-~~lLD---lTP~GR~E 198 (211)
T PF05988_consen 130 TFPWYSSYGSD-FNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST---YGRGGER--LMPT-WNLLD---LTPLGRQE 198 (211)
T ss_pred CceEEEcCCCc-ccccccceeccCCCceeEEEEEEcC-CEEEEEeec---CCCCchh--hhhH-HHHHh---cCCCCCCC
Confidence 58999998888 88999985432 2234447899987 999887754 4555555 4444 44443 44555544
Q ss_pred C
Q psy11208 96 D 96 (116)
Q Consensus 96 g 96 (116)
.
T Consensus 199 ~ 199 (211)
T PF05988_consen 199 D 199 (211)
T ss_pred C
Confidence 4
No 114
>PRK08671 methionine aminopeptidase; Provisional
Probab=40.07 E-value=14 Score=29.20 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=21.3
Q ss_pred ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+||+|.|.+|+ +..+ ...|++|.++|.++-
T Consensus 260 ~yp~l~e~~~~-~vaq-----------~~~Tv~v~~~g~~~~ 289 (291)
T PRK08671 260 GYPVLKEVKGG-LVSQ-----------AEHTVIVTEDGCEVT 289 (291)
T ss_pred cCCccEecCCC-EEEE-----------EEEEEEECCCCcEEe
Confidence 67777777666 4333 367999999998764
No 115
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=40.07 E-value=96 Score=20.73 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=27.6
Q ss_pred EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCC
Q psy11208 20 VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTG 67 (116)
Q Consensus 20 LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~ 67 (116)
+=.|.... ++++|++. ..|+..++ .+|++.....+....+
T Consensus 59 Vd~~~~~~-l~~~~~v~------~vPt~l~f-k~G~~v~~~~g~~~~~ 98 (113)
T cd02989 59 VNAEKAPF-LVEKLNIK------VLPTVILF-KNGKTVDRIVGFEELG 98 (113)
T ss_pred EEcccCHH-HHHHCCCc------cCCEEEEE-ECCEEEEEEECccccC
Confidence 33455667 99999988 56777666 5898888776654443
No 116
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=39.93 E-value=45 Score=20.91 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=19.1
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+.. +++.||+. ..|+ +++.++|++....
T Consensus 64 ~~~-~~~~~~i~------~~Pt-~~~~~~g~~~~~~ 91 (104)
T cd02997 64 HDA-LKEEYNVK------GFPT-FKYFENGKFVEKY 91 (104)
T ss_pred cHH-HHHhCCCc------cccE-EEEEeCCCeeEEe
Confidence 456 88999986 4565 4555689876544
No 117
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=39.93 E-value=1.4e+02 Score=22.20 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=31.2
Q ss_pred eEEEEeCCC-hHHHHHhCCCccC--CCCcceEEEEECCCCCEEEEEEccCCCCC----CccHHHHHHH
Q psy11208 18 AKVLSSRNR-REKEDRIGVLIEP--AGIPLRGLFIIDPKGVLRQITVNVPRTGK----TLFGYFTIRS 78 (116)
Q Consensus 18 fpLLSD~~~-~~vak~yGv~~~~--~G~~~RatFIID~dG~I~~~~~~~~~~~r----~~~e~~iL~~ 78 (116)
+++..|.+. -++.+.|.-+... ....-|.+.+++|+|+..+.-.+.++..+ .+.+ +|+.
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~--~l~~ 139 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQ--LLER 139 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHH--HHHH
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHH--HHHH
Confidence 567777653 2276776211000 00146899999999999987766544322 4666 6666
No 118
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=39.74 E-value=46 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.0
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
... +++.|++. ..|+.+++++.|+...
T Consensus 64 ~~~-~~~~~~i~------~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 64 NKD-LAKKYGVS------GFPTLKFFPKGSTEPV 90 (105)
T ss_pred chh-hHHhCCCC------CcCEEEEEeCCCCCcc
Confidence 456 99999987 5799999987765544
No 119
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=39.48 E-value=77 Score=21.76 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.1
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.=.+||+|++|++.+....
T Consensus 50 ~d~~~~~d~~g~~~~~~~~ 68 (161)
T PF05228_consen 50 LDLIFILDPDGRVLYSSSK 68 (161)
T ss_pred ccEEEEEcCCCCEEEEecc
Confidence 4569999999999984443
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=38.11 E-value=85 Score=18.38 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=26.9
Q ss_pred cccceEEEEeC-CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 14 GTVTAKVLSSR-NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 14 ~~l~fpLLSD~-~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.++.|-.+... ... +++.|++. ..|+.++++ +|.+.+...+
T Consensus 40 ~~~~~~~i~~~~~~~-~~~~~~v~------~~P~~~~~~-~g~~~~~~~g 81 (93)
T cd02947 40 PKVKFVKVDVDENPE-LAEEYGVR------SIPTFLFFK-NGKEVDRVVG 81 (93)
T ss_pred CCceEEEEECCCChh-HHHhcCcc------cccEEEEEE-CCEEEEEEec
Confidence 34566555444 356 99999987 468888885 6776665543
No 121
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=34.92 E-value=50 Score=26.79 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=20.5
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGK 68 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r 68 (116)
..-..|+||++|+++|........+.
T Consensus 103 g~d~vf~vd~~G~~vy~~~~d~~t~~ 128 (295)
T COG3322 103 GLDGVFVVDPSGKLVYSKLVDQETAT 128 (295)
T ss_pred CccEEEEECCCCCEEEEeeecccccc
Confidence 34679999999999999987654444
No 122
>PF13728 TraF: F plasmid transfer operon protein
Probab=34.76 E-value=73 Score=24.22 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.3
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
+.. +++.+|+. ..|++|+|++++.
T Consensus 172 ~~g-~~~~l~v~------~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 172 DPG-QAKRLGVK------VTPALFLVNPNTK 195 (215)
T ss_pred CHH-HHHHcCCC------cCCEEEEEECCCC
Confidence 345 78888885 6899999999883
No 123
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=33.48 E-value=37 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=21.1
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
.|.+.. ++++|++. ..|+.+++ ++|+...
T Consensus 58 ~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~ 86 (101)
T cd03003 58 CGDDRM-LCRSQGVN------SYPSLYVF-PSGMNPE 86 (101)
T ss_pred CCccHH-HHHHcCCC------ccCEEEEE-cCCCCcc
Confidence 455567 99999986 56887777 6887643
No 124
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=32.60 E-value=32 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.5
Q ss_pred EEEECCCCCEEEEEEc
Q psy11208 47 LFIIDPKGVLRQITVN 62 (116)
Q Consensus 47 tFIID~dG~I~~~~~~ 62 (116)
.|.|+|||+|.-...+
T Consensus 2 ~~~I~~dG~V~~~v~G 17 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEG 17 (48)
T ss_pred EEEECCCcEEEEEEEe
Confidence 4899999999875543
No 125
>KOG0910|consensus
Probab=32.15 E-value=70 Score=23.56 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=30.0
Q ss_pred ccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 15 TVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 15 ~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
.+.|- +=.|.+.+ ++..|++. +.|+++++. +|..+...++.
T Consensus 93 ~~k~~kvdtD~~~e-la~~Y~I~------avPtvlvfk-nGe~~d~~vG~ 134 (150)
T KOG0910|consen 93 KFKLYKVDTDEHPE-LAEDYEIS------AVPTVLVFK-NGEKVDRFVGA 134 (150)
T ss_pred eEEEEEEccccccc-hHhhccee------eeeEEEEEE-CCEEeeeeccc
Confidence 34433 33567778 99999998 789999995 89888666543
No 126
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=31.67 E-value=37 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCCccH
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKTLFG 72 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~~~e 72 (116)
..+++|||+++--.+.+|+..+..+.|++-
T Consensus 43 ~~~~~~VINkQ~p~~QIWlas~sG~~hf~~ 72 (105)
T PRK00446 43 ENGSKIIINRQEPLHELWLAAKSGGFHFDY 72 (105)
T ss_pred CCCCEEEEeCCCchhheeEecCCCCcccee
Confidence 468999999999999999987654445543
No 127
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.98 E-value=66 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.0
Q ss_pred cceEEEEECCCCCEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~ 60 (116)
..|..++.||+|.+..+.
T Consensus 100 g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 100 GQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred ccEEEEEECCCCCEEEEe
Confidence 459999999999987654
No 128
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=29.99 E-value=91 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=20.0
Q ss_pred ccccCCCCCCCCCccCChhhHHHH
Q psy11208 87 SVCPANWKPDSPTIKPSPAESKEY 110 (116)
Q Consensus 87 ~~~p~~w~~g~~~~~~~~~~~~~~ 110 (116)
++||.---.....+.|+|+++.+|
T Consensus 119 Eic~V~~~~~~~~~~~npdEV~~~ 142 (185)
T COG1443 119 EICPVLAARLDSALDPNPDEVMDY 142 (185)
T ss_pred eeeeEEEEeecCCCCCChHHhhhe
Confidence 888887777777899999999877
No 129
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.83 E-value=62 Score=20.01 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=16.9
Q ss_pred HHHHhCCCccCCC-CcceEEEEE
Q psy11208 29 KEDRIGVLIEPAG-IPLRGLFII 50 (116)
Q Consensus 29 vak~yGv~~~~~G-~~~RatFII 50 (116)
+++.||+..+..| -+.|.++|.
T Consensus 36 la~~~gl~SeS~d~Ep~R~V~v~ 58 (59)
T cd06006 36 LAKDYGLYSESQDPEPKRSVFVK 58 (59)
T ss_pred HHHHcCCeeEecCCCCCcEEEEe
Confidence 8999999876655 467888874
No 130
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=28.57 E-value=27 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=20.5
Q ss_pred ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+||+|.|.+|. +..+ ...|++|.++|+++-
T Consensus 260 ~y~~l~e~~g~-~vaq-----------~~~T~~v~~~g~~~~ 289 (291)
T cd01088 260 PYPVLKEISGG-YVAQ-----------FEHTIIVREDGKEVT 289 (291)
T ss_pred cCCccEeeCCC-eEEE-----------EEEEEEECCCCcEec
Confidence 57777776665 4333 356899999998764
No 131
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=27.91 E-value=86 Score=19.56 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=21.1
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCC
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPK 53 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~d 53 (116)
+.|..+ .|.+.+ +++.||+. ..|+++++++.
T Consensus 51 ~~~~~id~~~~~~-~~~~~~i~------~~P~~~~~~~~ 82 (103)
T cd03001 51 VKVGAVDADVHQS-LAQQYGVR------GFPTIKVFGAG 82 (103)
T ss_pred ceEEEEECcchHH-HHHHCCCC------ccCEEEEECCC
Confidence 344333 344556 99999987 57899999754
No 132
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=27.63 E-value=92 Score=25.40 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcCccccCCCCCC
Q psy11208 53 KGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFSVCPANWKPD 96 (116)
Q Consensus 53 dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~~~~p~~w~~g 96 (116)
++.|+.++..+...-+...+ ++++ |+.-..+.++|.||--+
T Consensus 157 ~~~i~~V~~~~~e~a~~~p~--vl~A-I~~AD~IVlGPgsp~TS 197 (303)
T cd07186 157 EPEVRDVRFVGAEEARPAPE--VLEA-IEDADLVIIGPSNPVTS 197 (303)
T ss_pred CCCeEEEEeCCcccCCCCHH--HHHH-HHhCCEEEECCCccHHH
Confidence 45666666544333445778 8899 88888889999997543
No 133
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=27.51 E-value=80 Score=19.61 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.0
Q ss_pred cceEEEEECCCCCEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~ 59 (116)
..|..++.||+|.+..+
T Consensus 91 g~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 91 GQRSFYFIDPDGNRIEF 107 (108)
T ss_dssp SEEEEEEE-TTS-EEEE
T ss_pred CeEEEEEECCCCCEEEe
Confidence 45999999999987653
No 134
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.93 E-value=40 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=22.7
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCCcc
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKTLF 71 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~~~ 71 (116)
..+++|||+++--.+.+|+..+..+.|++
T Consensus 41 ~~~~~~VINkQ~p~~QIWlaspsG~~hF~ 69 (102)
T TIGR03421 41 ENGSQIIINKQEPLHQIWLAAKSGGFHFD 69 (102)
T ss_pred CCCCEEEEeCCchhhhheeecCCCCccce
Confidence 46899999999999999988775444543
No 135
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=26.65 E-value=1.2e+02 Score=24.75 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=24.8
Q ss_pred CEEEEEEccCCCCCCccHHHHHHHHHhhhCcCccccCCCCC
Q psy11208 55 VLRQITVNVPRTGKTLFGYFTIRSVISSFGLFSVCPANWKP 95 (116)
Q Consensus 55 ~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~~~~p~~w~~ 95 (116)
.|+.++......-+...+ ++++ |+.-..+..+|.||--
T Consensus 158 ~i~~V~~~g~e~a~a~pe--al~A-I~~AD~IIlGPgsp~T 195 (297)
T TIGR01819 158 PVEDVDFRGAEKASIAPK--VLEA-IRKEDNILIGPSNPIT 195 (297)
T ss_pred CeeEEEECCCCCCCCCHH--HHHH-HHhCCEEEECCCccHH
Confidence 444544432223345678 8888 8888888999998753
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=26.54 E-value=1.1e+02 Score=22.71 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE-EEEc
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ-ITVN 62 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~-~~~~ 62 (116)
.+.. +++.||+. ..|+..+++ +|.... .+.+
T Consensus 65 ~~~~-l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G 96 (215)
T TIGR02187 65 EDKE-EAEKYGVE------RVPTTIILE-EGKDGGIRYTG 96 (215)
T ss_pred ccHH-HHHHcCCC------ccCEEEEEe-CCeeeEEEEee
Confidence 4556 99999988 567777776 576653 4544
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=26.49 E-value=1.4e+02 Score=17.32 Aligned_cols=35 Identities=17% Similarity=0.452 Sum_probs=21.2
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEE
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~ 59 (116)
++.|..+- |.+.+ +++.||+. ..|+. +|| |++++.
T Consensus 30 ~i~~~~id~~~~~~-l~~~~~i~------~vPti-~i~--~~~~~~ 65 (67)
T cd02973 30 NISAEMIDAAEFPD-LADEYGVM------SVPAI-VIN--GKVEFV 65 (67)
T ss_pred ceEEEEEEcccCHh-HHHHcCCc------ccCEE-EEC--CEEEEe
Confidence 45666653 33455 89999986 34654 554 566553
No 138
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=26.33 E-value=1e+02 Score=20.03 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=17.6
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPK 53 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~d 53 (116)
... ++++|++. ..|+++++++.
T Consensus 61 ~~~-l~~~~~V~------~~PT~~lf~~g 82 (100)
T cd02999 61 KPS-LLSRYGVV------GFPTILLFNST 82 (100)
T ss_pred CHH-HHHhcCCe------ecCEEEEEcCC
Confidence 356 99999987 57999999754
No 139
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.82 E-value=1e+02 Score=19.68 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.5
Q ss_pred cceEEEEECCCCCEEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~ 61 (116)
..|..++.||+|....+..
T Consensus 90 ~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 90 DPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred CCCEEEEECCCCCEEEEec
Confidence 3478999999999987664
No 140
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=25.67 E-value=39 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q psy11208 86 FSVCPANWKPD 96 (116)
Q Consensus 86 ~~~~p~~w~~g 96 (116)
...||.+|...
T Consensus 6 s~~CP~~W~~~ 16 (60)
T PF09717_consen 6 SQPCPEGWILS 16 (60)
T ss_pred ccccccccccC
Confidence 35799999943
No 141
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=25.59 E-value=1.2e+02 Score=19.37 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=17.2
Q ss_pred eEEEEECCCCCEEEEEEccCCCC
Q psy11208 45 RGLFIIDPKGVLRQITVNVPRTG 67 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~~~~~~ 67 (116)
-.+..+|.+|.|..+.+.+.-..
T Consensus 31 ~V~V~v~g~g~v~~i~i~~~~~~ 53 (93)
T PF02575_consen 31 LVTVTVNGNGEVVDIEIDPSALR 53 (93)
T ss_dssp TEEEEEETTS-EEEEEE-GGGGC
T ss_pred EEEEEEecCceEEEEEEehHhhc
Confidence 35899999999999999876444
No 142
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=25.53 E-value=1.5e+02 Score=19.15 Aligned_cols=34 Identities=12% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccceEEEEeC-CChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 15 TVTAKVLSSR-NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 15 ~l~fpLLSD~-~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+++|.++--. ..+ +++.||+. ..|+++ | +|++.+
T Consensus 43 ~i~~~~vd~~~~~e-~a~~~~V~------~vPt~v-i--dG~~~~ 77 (89)
T cd03026 43 NIEHEMIDGALFQD-EVEERGIM------SVPAIF-L--NGELFG 77 (89)
T ss_pred CceEEEEEhHhCHH-HHHHcCCc------cCCEEE-E--CCEEEE
Confidence 4666665432 335 89999997 456665 5 587766
No 143
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=25.52 E-value=1.1e+02 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=16.5
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
.++.+|+. ..|++|+|+++..
T Consensus 205 qa~~l~v~------~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 205 QAQHLGVK------YFPALYLVNPKSQ 225 (256)
T ss_pred HHHhcCCc------cCceEEEEECCCC
Confidence 56777775 4799999999944
No 144
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=25.25 E-value=1.5e+02 Score=17.77 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.2
Q ss_pred ceEEEEECCCCCEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~ 60 (116)
.+.+|-+|++|.-+-..
T Consensus 18 aP~vF~~d~~g~a~~~~ 34 (65)
T PF13459_consen 18 APEVFELDDDGKAVVLV 34 (65)
T ss_pred CCccEEECCCCCEEEEe
Confidence 47899999999765543
No 145
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=25.13 E-value=96 Score=20.06 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.1
Q ss_pred cceEEEEECCCCCEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~ 59 (116)
..|..|+.||+|....+
T Consensus 100 g~~~~~~~DPdG~~ie~ 116 (120)
T cd08350 100 GMREFALVDPDGNLLRF 116 (120)
T ss_pred ceeEEEEECCCCCEEEe
Confidence 46899999999987654
No 146
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.89 E-value=1.1e+02 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.9
Q ss_pred ceEEEEECCCCCEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~ 60 (116)
.|+.|+.||+|.+..+.
T Consensus 107 ~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 107 QETFFLKDPSGNALEFK 123 (125)
T ss_pred eeEEEEECCCCCEEEEe
Confidence 48899999999887543
No 147
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=24.51 E-value=65 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.8
Q ss_pred CCcceEEEEECCCCCEEEEEEc
Q psy11208 41 GIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 41 G~~~RatFIID~dG~I~~~~~~ 62 (116)
|...|+++++|++|+++....+
T Consensus 77 g~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 77 GQYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred CcccCeEEEECCCCCCcccccc
Confidence 3457999999999999876654
No 148
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=24.13 E-value=1.7e+02 Score=18.65 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=18.8
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
|.... +++.|++. ..|+.++++ +|.+
T Consensus 59 ~~~~~-~~~~~~I~------~~Pt~~l~~-~~~~ 84 (104)
T cd03000 59 TAYSS-IASEFGVR------GYPTIKLLK-GDLA 84 (104)
T ss_pred ccCHh-HHhhcCCc------cccEEEEEc-CCCc
Confidence 33456 99999987 579999995 4543
No 149
>PTZ00102 disulphide isomerase; Provisional
Probab=24.11 E-value=2e+02 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=34.1
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+.|.-+ ++.+.. +++.||+. ..|+.++++..+.++ +. ..++.++ +.+. ++.+.
T Consensus 85 i~~~~vd~~~~~~-l~~~~~i~------~~Pt~~~~~~g~~~~--y~----g~~~~~~--l~~~-l~~~~ 138 (477)
T PTZ00102 85 IVLASVDATEEME-LAQEFGVR------GYPTIKFFNKGNPVN--YS----GGRTADG--IVSW-IKKLT 138 (477)
T ss_pred EEEEEEECCCCHH-HHHhcCCC------cccEEEEEECCceEE--ec----CCCCHHH--HHHH-HHHhh
Confidence 444443 455667 99999987 579999998655442 21 2355666 7777 66543
No 150
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=24.00 E-value=1.4e+02 Score=18.70 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=15.8
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.++.++.||+|.+..+...
T Consensus 96 ~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 96 GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred ceEEEEECCCCCEEEEEEc
Confidence 4889999999999877653
No 151
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=23.96 E-value=99 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.099 Sum_probs=18.4
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCC
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKG 54 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG 54 (116)
|.+.. +++.|++. ..|+.+++.+..
T Consensus 65 ~~~~~-~~~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 65 EENVA-LCRDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred hhhHH-HHHhCCCC------CCCEEEEECCCC
Confidence 34556 89999987 568899996544
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=23.66 E-value=1.3e+02 Score=18.57 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEE
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~ 57 (116)
.+..||+. ..|+.+| +|++.
T Consensus 41 ~a~~~~v~------~vPti~i---~G~~~ 60 (76)
T TIGR00412 41 EILEAGVT------ATPGVAV---DGELV 60 (76)
T ss_pred HHHHcCCC------cCCEEEE---CCEEE
Confidence 56778887 4576555 78776
No 153
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.54 E-value=1.5e+02 Score=18.89 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=14.9
Q ss_pred eEEEEECCCCCEEEEEEc
Q psy11208 45 RGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~ 62 (116)
++.|+.||+|....+...
T Consensus 102 ~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 102 EALYLSDPEGNGIEIYAD 119 (125)
T ss_pred eEEEEECCCCCEEEEEEe
Confidence 688999999999876643
No 154
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=23.49 E-value=1.3e+02 Score=19.55 Aligned_cols=37 Identities=3% Similarity=-0.004 Sum_probs=23.3
Q ss_pred ChHHHH-HhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccH
Q psy11208 26 RREKED-RIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFG 72 (116)
Q Consensus 26 ~~~vak-~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e 72 (116)
.. +++ .|++. ..|+.+++++++...+.+.+ ..++.+.
T Consensus 67 ~~-~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g---~~~~~~~ 104 (109)
T cd02993 67 RE-FAKEELQLK------SFPTILFFPKNSRQPIKYPS---EQRDVDS 104 (109)
T ss_pred hh-hHHhhcCCC------cCCEEEEEcCCCCCceeccC---CCCCHHH
Confidence 44 676 48876 57999999887765544322 1255555
No 155
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=23.29 E-value=78 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=12.2
Q ss_pred ceEE-EEECCCCCEEEEEEcc
Q psy11208 44 LRGL-FIIDPKGVLRQITVNV 63 (116)
Q Consensus 44 ~Rat-FIID~dG~I~~~~~~~ 63 (116)
.|-+ =|+|.||+|+|..+..
T Consensus 73 ~ri~LAiv~~DsTiVYY~i~~ 93 (101)
T PF09631_consen 73 KRILLAIVDDDSTIVYYKIHD 93 (101)
T ss_dssp -EEEEEEE-TTS-EEEEEEE-
T ss_pred cEEEEEEEcCCCCEEEEEEeC
Confidence 3433 3789999999988754
No 156
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=23.19 E-value=1.3e+02 Score=19.53 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.9
Q ss_pred eEEEEECCCCCEEEEEEc
Q psy11208 45 RGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~ 62 (116)
+..|+.||+|........
T Consensus 100 ~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 100 GLIRFADPDGNRHELFWG 117 (120)
T ss_pred EEEEEECCCCCEEEEEec
Confidence 688999999998876653
No 157
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=23.17 E-value=37 Score=26.95 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=19.9
Q ss_pred ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+||+|.|.+|. ...+ ...|++|.++|.++-
T Consensus 264 ~yp~l~e~~g~-~vaq-----------~~~Tv~v~~~g~~~~ 293 (295)
T TIGR00501 264 DYPVLNEISGG-YVAQ-----------WEHTILVEEHGKEVT 293 (295)
T ss_pred CCCccEeeCCC-EEEE-----------EEEEEEECCCccEEc
Confidence 56777776665 3222 366889999988753
No 158
>PLN00050 expansin A; Provisional
Probab=23.07 E-value=42 Score=26.56 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=10.0
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|++|++|+
T Consensus 230 ~V~Pa~W~~G~ 240 (247)
T PLN00050 230 NAAPSNWAFGQ 240 (247)
T ss_pred ceeCCCCCCCC
Confidence 78899999996
No 159
>KOG4614|consensus
Probab=22.56 E-value=85 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=17.4
Q ss_pred cceEEEEECCCCCEEEEEEccC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~ 64 (116)
-.-.+|+||..|+||+.-.+..
T Consensus 247 l~GyV~L~D~s~kIRW~g~G~a 268 (287)
T KOG4614|consen 247 LTGYVLLLDKSGKIRWQGFGTA 268 (287)
T ss_pred eeEEEEEEccCceEEEeecCCC
Confidence 3456999999999999776544
No 160
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=22.33 E-value=1.4e+02 Score=20.63 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=16.5
Q ss_pred eEEEEECCCCCEEEEEEcc
Q psy11208 45 RGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~~ 63 (116)
.+.||+|.+|.++....+.
T Consensus 3 ~~i~i~n~~G~~i~~k~y~ 21 (141)
T PF01217_consen 3 KAILILNSQGKRILSKYYR 21 (141)
T ss_dssp EEEEEEETTSEEEEEEESS
T ss_pred EEEEEEcCCCCEEEehhcC
Confidence 5789999999999888774
No 161
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=22.06 E-value=67 Score=18.43 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.7
Q ss_pred ceEEEEECCCCCEEEE
Q psy11208 44 LRGLFIIDPKGVLRQI 59 (116)
Q Consensus 44 ~RatFIID~dG~I~~~ 59 (116)
.+..+.|+++|.|.-=
T Consensus 4 ~~~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 4 GWNSLYIDPDGDVYPC 19 (64)
T ss_pred cCeEEEEeeCccEEeC
Confidence 4678889999999764
No 162
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=22.03 E-value=1.7e+02 Score=16.84 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.6
Q ss_pred EEEEECCCCCEEEEEEccC
Q psy11208 46 GLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 46 atFIID~dG~I~~~~~~~~ 64 (116)
+...+||+|+.+.+.....
T Consensus 30 sY~y~~pdG~~~~V~Y~Ad 48 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTYVAD 48 (52)
T ss_pred EEEEECCCCCEEEEEEECC
Confidence 3458999999998886553
No 163
>PF11199 DUF2891: Protein of unknown function (DUF2891); InterPro: IPR021365 This is a bacterial family of uncharacterised proteins.
Probab=21.88 E-value=90 Score=25.83 Aligned_cols=14 Identities=36% Similarity=1.049 Sum_probs=11.8
Q ss_pred ccccCCCCCCCCCc
Q psy11208 87 SVCPANWKPDSPTI 100 (116)
Q Consensus 87 ~~~p~~w~~g~~~~ 100 (116)
..||+.|+|++.-.
T Consensus 196 ~~cp~~~EPsG~DF 209 (326)
T PF11199_consen 196 KDCPAHWEPSGDDF 209 (326)
T ss_pred cCCCcccCCCCccc
Confidence 89999999986543
No 164
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.70 E-value=1.4e+02 Score=19.40 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=15.5
Q ss_pred cceEEEEECCCCCEEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~ 61 (116)
..|..|+.||+|.+..+..
T Consensus 102 g~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 102 GGRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred CeeEEEEECCCCCEEEEEe
Confidence 3599999999999877654
No 165
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=21.61 E-value=1e+02 Score=22.26 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.8
Q ss_pred eEEEEECCCCCEEEEEEccCCC
Q psy11208 45 RGLFIIDPKGVLRQITVNVPRT 66 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~~~~~ 66 (116)
+.+.=|.+||+|||+-+.....
T Consensus 41 ~~Sisvg~DgvVRY~lv~~S~~ 62 (139)
T PF08750_consen 41 PKSISVGPDGVVRYTLVVRSPS 62 (139)
T ss_pred hhheEECCCCcEEEEEEEcCCC
Confidence 4455667999999998765433
No 166
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.46 E-value=1.4e+02 Score=19.31 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.6
Q ss_pred ceEEEEECCCCCEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~ 60 (116)
.++.|+.||||.+..+.
T Consensus 106 ~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 106 MYGRSFADLDGHLWEVL 122 (124)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 46789999999987653
No 167
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=21.46 E-value=1.3e+02 Score=17.99 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
.+.+ .++.||+. ..|+.+ + +|++
T Consensus 41 ~~~~-~~~~~~v~------~vPt~~-~--~g~~ 63 (82)
T TIGR00411 41 ENPQ-KAMEYGIM------AVPAIV-I--NGDV 63 (82)
T ss_pred cCHH-HHHHcCCc------cCCEEE-E--CCEE
Confidence 4456 88899887 456655 5 5654
No 168
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=21.41 E-value=1.7e+02 Score=18.77 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.2
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.++.|+-||+|....+...
T Consensus 92 ~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 92 GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ceEEEEECCCCCEEEEEec
Confidence 5789999999998766543
No 169
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.95 E-value=1.3e+02 Score=18.80 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=13.8
Q ss_pred ceEEEEECCCCCEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~ 60 (116)
.++.++.||+|.+..+.
T Consensus 107 ~~~~~~~DPdG~~ve~~ 123 (125)
T cd07253 107 ITSVYFRDPDGNLIELS 123 (125)
T ss_pred ccEEEEECCCCCEEEee
Confidence 47899999999887643
No 170
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.77 E-value=1.2e+02 Score=19.67 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=13.9
Q ss_pred cceEEEEECCCCCEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~ 59 (116)
..|..++.||+|.+..+
T Consensus 95 g~r~f~~~DPdGn~~~~ 111 (113)
T cd08356 95 WGREFFLHDPSGVLWHI 111 (113)
T ss_pred CcEEEEEECCCccEEEe
Confidence 35999999999988653
No 171
>PLN00193 expansin-A; Provisional
Probab=20.74 E-value=50 Score=26.29 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=10.0
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|++|++|+
T Consensus 238 ~viPa~W~~G~ 248 (256)
T PLN00193 238 NVVPANWGFGQ 248 (256)
T ss_pred ceeCCCCCCCC
Confidence 88899999996
No 172
>KOG2501|consensus
Probab=20.72 E-value=1.2e+02 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+.+.|+|. ..++..++.++|++....
T Consensus 107 l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 107 LSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred HHHhcccC------cCceeEEecCCCCEehHh
Confidence 55566655 579999999999887643
No 173
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=20.57 E-value=1.4e+02 Score=19.15 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.3
Q ss_pred cceEEEEECCCCCEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~ 60 (116)
..|..++-||+|.+..++
T Consensus 104 g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 104 GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CCEEEEEECCCCCEEEEe
Confidence 348889999999987643
No 174
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=20.51 E-value=1.7e+02 Score=20.12 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=24.3
Q ss_pred EEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcCc
Q psy11208 46 GLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFS 87 (116)
Q Consensus 46 atFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~~ 87 (116)
..++|-.+|..+.+-+.. . .+.++ |++.+|+.+...+
T Consensus 2 vi~~I~~dG~tk~VNV~~--c-~~a~e--I~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSG--C-FNAQE--IKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S-----HHHH--HHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECC--C-CCHHH--HHHHHHHHcCCcc
Confidence 357788899888765432 2 35788 8877699988664
No 175
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=20.44 E-value=1.3e+02 Score=19.72 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred hHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 27 REKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 27 ~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
. ++..|++. ..|+.+++ .+|++.....+..
T Consensus 67 ~-l~~~~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 67 F-LVNYLDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred H-HHHhcCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 6 99999987 56766666 6899988777654
No 176
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=20.43 E-value=52 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.1
Q ss_pred ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+||+|.|..|. +..+ ...|++|.++|.++..-
T Consensus 305 ~ypvl~e~~g~-~Vaq-----------f~~Tv~v~~~g~~~~t~ 336 (389)
T TIGR00495 305 PYPVLYEKEGE-FVAQ-----------FKFTVLLMPNGPMRITS 336 (389)
T ss_pred cCCceEeeCCC-eEEE-----------EEEEEEECCCCcEEeCC
Confidence 67777777666 3332 46799999999988754
No 177
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.28 E-value=54 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.0
Q ss_pred ceEEEEECCCCCEEE
Q psy11208 44 LRGLFIIDPKGVLRQ 58 (116)
Q Consensus 44 ~RatFIID~dG~I~~ 58 (116)
....||+|.+|+|.+
T Consensus 53 ~g~~~ivd~~G~ii~ 67 (81)
T PF02743_consen 53 NGYAFIVDKNGTIIA 67 (81)
T ss_dssp TBEEEEEETTSBBCE
T ss_pred CEEEEEEECCCCEEE
Confidence 457999999999987
No 178
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.16 E-value=50 Score=22.37 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCEEEEEEccC-CCCCCcc
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVP-RTGKTLF 71 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~-~~~r~~~ 71 (116)
..+++|||+++-=.+.+|+..+ +.+.|++
T Consensus 43 ~~~~~~VINkQ~p~~QIWlsSp~sGp~hfd 72 (97)
T TIGR03422 43 PSVGTYVINKQPPNKQIWLSSPVSGPKRYD 72 (97)
T ss_pred CCCCEEEEeCCChhhHHheecCCCCCccee
Confidence 5689999999999999999875 3334543
Done!