Query psy11208
Match_columns 116
No_of_seqs 123 out of 1307
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:53:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbc_A Peroxiredoxin TSA1; alp 100.0 4.6E-34 1.6E-38 217.6 9.2 110 1-116 103-216 (216)
2 3tue_A Tryparedoxin peroxidase 100.0 2.7E-32 9.1E-37 208.3 6.2 107 1-113 107-218 (219)
3 3tjj_A Peroxiredoxin-4; thiore 99.9 2.6E-25 9E-30 171.1 6.4 109 1-115 142-254 (254)
4 3qpm_A Peroxiredoxin; oxidored 99.9 5.7E-24 1.9E-28 161.7 8.3 108 1-114 128-239 (240)
5 2i81_A 2-Cys peroxiredoxin; st 99.9 3.3E-22 1.1E-26 148.9 9.1 105 3-114 105-213 (213)
6 2pn8_A Peroxiredoxin-4; thiore 99.9 2.6E-22 9.1E-27 149.2 8.6 103 6-114 104-210 (211)
7 1uul_A Tryparedoxin peroxidase 99.9 3.6E-22 1.2E-26 146.0 8.6 104 6-115 92-199 (202)
8 1zye_A Thioredoxin-dependent p 99.9 3.1E-22 1.1E-26 149.4 7.2 108 3-116 109-220 (220)
9 1qmv_A Human thioredoxin perox 99.9 1.4E-21 4.8E-26 142.1 9.2 105 4-114 88-196 (197)
10 1prx_A HORF6; peroxiredoxin, h 99.8 2.5E-21 8.6E-26 145.8 6.9 96 14-113 96-204 (224)
11 2h01_A 2-Cys peroxiredoxin; th 99.8 2.8E-21 9.6E-26 139.8 6.8 102 6-114 87-192 (192)
12 3a2v_A Probable peroxiredoxin; 99.8 3E-21 1E-25 148.8 6.7 103 2-112 85-200 (249)
13 2v2g_A Peroxiredoxin 6; oxidor 99.8 1.8E-21 6.2E-26 148.1 4.2 95 15-113 93-200 (233)
14 2c0d_A Thioredoxin peroxidase 99.8 5.9E-21 2E-25 143.5 6.7 101 8-115 114-218 (221)
15 1xcc_A 1-Cys peroxiredoxin; un 99.8 5.3E-21 1.8E-25 143.7 6.3 94 14-111 93-199 (220)
16 1n8j_A AHPC, alkyl hydroperoxi 99.8 2.2E-19 7.5E-24 130.3 8.5 88 14-105 89-181 (186)
17 3ztl_A Thioredoxin peroxidase; 99.8 2.2E-18 7.4E-23 128.5 8.3 93 7-105 126-222 (222)
18 1zof_A Alkyl hydroperoxide-red 99.7 4.8E-18 1.6E-22 123.3 5.3 102 6-114 89-194 (198)
19 1we0_A Alkyl hydroperoxide red 99.7 3.7E-17 1.3E-21 117.4 7.4 87 15-105 91-182 (187)
20 2bmx_A Alkyl hydroperoxidase C 99.6 3.1E-16 1E-20 113.6 8.0 89 14-107 104-192 (195)
21 4gqc_A Thiol peroxidase, perox 99.5 3.4E-14 1.2E-18 101.4 5.8 68 13-84 87-159 (164)
22 4eo3_A Bacterioferritin comigr 99.5 3.3E-14 1.1E-18 112.4 5.8 67 13-86 74-140 (322)
23 4g2e_A Peroxiredoxin; redox pr 99.5 1.9E-13 6.6E-18 96.4 7.8 67 14-84 85-157 (157)
24 3mng_A Peroxiredoxin-5, mitoch 99.3 2.3E-12 8E-17 93.5 7.3 65 14-83 100-173 (173)
25 3keb_A Probable thiol peroxida 99.2 1.6E-11 5.5E-16 93.5 7.5 67 14-84 103-175 (224)
26 1xiy_A Peroxiredoxin, pfaop; a 99.2 2.3E-11 7.9E-16 89.5 6.2 63 17-84 105-181 (182)
27 4f82_A Thioredoxin reductase; 99.1 7.8E-11 2.7E-15 86.8 6.1 64 15-84 105-175 (176)
28 3p7x_A Probable thiol peroxida 99.1 1.5E-10 5E-15 81.4 6.9 66 14-83 98-166 (166)
29 1psq_A Probable thiol peroxida 99.0 6.7E-10 2.3E-14 77.8 7.9 66 14-83 95-163 (163)
30 2xhf_A Peroxiredoxin 5; oxidor 99.0 1.7E-10 5.9E-15 84.3 4.0 58 17-78 103-168 (171)
31 1xvw_A Hypothetical protein RV 99.0 1E-09 3.5E-14 75.7 7.0 67 14-84 91-159 (160)
32 2cvb_A Probable thiol-disulfid 99.0 8.2E-10 2.8E-14 78.4 6.6 75 14-98 94-182 (188)
33 2ywi_A Hypothetical conserved 99.0 8.4E-10 2.9E-14 78.5 6.3 74 14-97 108-196 (196)
34 3ixr_A Bacterioferritin comigr 99.0 5.4E-10 1.8E-14 80.0 5.3 66 14-84 106-177 (179)
35 3gkn_A Bacterioferritin comigr 99.0 8.4E-10 2.9E-14 76.5 5.9 66 14-84 90-161 (163)
36 3zrd_A Thiol peroxidase; oxido 99.0 1.8E-09 6E-14 79.1 7.7 63 14-80 131-199 (200)
37 3u5r_E Uncharacterized protein 98.9 1.8E-09 6.2E-14 79.5 6.9 75 14-98 121-210 (218)
38 1nm3_A Protein HI0572; hybrid, 98.9 1.7E-09 5.8E-14 80.4 6.6 65 14-83 90-165 (241)
39 1q98_A Thiol peroxidase, TPX; 98.9 2.5E-09 8.5E-14 75.1 7.1 62 14-78 96-163 (165)
40 3drn_A Peroxiredoxin, bacterio 98.9 1.7E-09 5.7E-14 75.5 6.1 67 14-86 84-150 (161)
41 3uma_A Hypothetical peroxiredo 98.9 1.7E-09 5.9E-14 78.9 5.4 61 14-78 113-183 (184)
42 2yzh_A Probable thiol peroxida 98.9 5.3E-09 1.8E-13 73.5 7.8 65 14-83 100-170 (171)
43 2jsy_A Probable thiol peroxida 98.9 9.5E-09 3.2E-13 71.6 8.7 66 14-83 97-165 (167)
44 2pwj_A Mitochondrial peroxired 98.8 5.2E-09 1.8E-13 74.8 6.3 55 16-72 104-163 (171)
45 1tp9_A Peroxiredoxin, PRX D (t 98.8 8E-09 2.7E-13 72.6 6.3 57 17-78 97-161 (162)
46 1xvq_A Thiol peroxidase; thior 98.8 2.7E-08 9.1E-13 70.6 8.4 66 14-83 96-166 (175)
47 2wfc_A Peroxiredoxin 5, PRDX5; 98.6 7.2E-08 2.5E-12 68.8 6.5 54 14-69 88-148 (167)
48 2a4v_A Peroxiredoxin DOT5; yea 98.6 4.2E-08 1.4E-12 68.0 4.1 47 14-63 89-136 (159)
49 3hdc_A Thioredoxin family prot 98.4 1.2E-06 4.1E-11 60.2 8.0 60 13-84 92-151 (158)
50 2b7k_A SCO1 protein; metalloch 98.3 3.6E-07 1.2E-11 66.2 4.3 77 14-94 103-195 (200)
51 3kcm_A Thioredoxin family prot 98.3 1.4E-06 4.8E-11 58.9 7.0 59 14-84 84-142 (154)
52 4evm_A Thioredoxin family prot 98.3 2.4E-06 8.3E-11 55.6 7.3 55 15-83 82-137 (138)
53 3gl3_A Putative thiol:disulfid 98.3 2.7E-06 9.4E-11 57.4 7.3 59 14-84 83-141 (152)
54 3eyt_A Uncharacterized protein 98.2 2.7E-06 9.1E-11 57.9 6.7 56 14-83 90-150 (158)
55 2f9s_A Thiol-disulfide oxidore 98.2 3.4E-06 1.2E-10 57.1 6.4 57 14-84 81-137 (151)
56 2b5x_A YKUV protein, TRXY; thi 98.2 5E-06 1.7E-10 55.3 7.0 56 14-83 88-143 (148)
57 3fw2_A Thiol-disulfide oxidore 98.2 2E-06 6.7E-11 58.5 5.0 41 14-61 91-134 (150)
58 1lu4_A Soluble secreted antige 98.1 7E-06 2.4E-10 53.9 6.9 58 14-83 77-134 (136)
59 3kh7_A Thiol:disulfide interch 98.1 2.2E-06 7.4E-11 60.6 4.5 44 14-64 109-153 (176)
60 1xzo_A BSSCO, hypothetical pro 98.1 4.7E-06 1.6E-10 57.5 5.9 65 14-84 94-171 (174)
61 1jfu_A Thiol:disulfide interch 98.1 6.2E-06 2.1E-10 57.9 6.2 63 14-84 116-179 (186)
62 3ewl_A Uncharacterized conserv 98.1 8E-06 2.7E-10 54.6 6.1 55 13-84 84-140 (142)
63 2l5o_A Putative thioredoxin; s 98.0 8.9E-06 3E-10 54.9 6.0 56 14-83 84-139 (153)
64 3erw_A Sporulation thiol-disul 98.0 8.2E-06 2.8E-10 54.0 5.6 43 14-63 92-134 (145)
65 3lor_A Thiol-disulfide isomera 98.0 2.1E-05 7.3E-10 53.3 7.2 44 14-63 92-140 (160)
66 2lrn_A Thiol:disulfide interch 98.0 7.8E-06 2.7E-10 55.6 4.8 40 14-60 84-126 (152)
67 3fkf_A Thiol-disulfide oxidore 98.0 8.8E-06 3E-10 54.2 5.0 41 14-61 89-132 (148)
68 3lwa_A Secreted thiol-disulfid 98.0 1.3E-05 4.5E-10 56.1 5.7 59 14-83 121-179 (183)
69 1zzo_A RV1677; thioredoxin fol 98.0 2.9E-05 9.9E-10 50.6 7.0 55 14-83 78-133 (136)
70 1kng_A Thiol:disulfide interch 97.9 1.3E-05 4.4E-10 54.1 4.5 43 14-63 94-137 (156)
71 2h30_A Thioredoxin, peptide me 97.9 4.2E-05 1.4E-09 52.0 6.8 56 15-84 99-155 (164)
72 2b1k_A Thiol:disulfide interch 97.8 1.3E-05 4.6E-10 55.1 3.9 43 14-63 102-145 (168)
73 3ia1_A THIO-disulfide isomeras 97.8 1.5E-05 5.2E-10 53.9 3.9 57 14-84 84-143 (154)
74 2k6v_A Putative cytochrome C o 97.8 3.9E-06 1.3E-10 57.7 0.8 63 14-83 97-171 (172)
75 2rli_A SCO2 protein homolog, m 97.8 4.1E-05 1.4E-09 52.5 5.8 61 14-82 89-161 (171)
76 2ls5_A Uncharacterized protein 97.0 3.1E-06 1.1E-10 57.9 0.0 57 13-78 89-145 (159)
77 2ggt_A SCO1 protein homolog, m 97.8 1.1E-05 3.6E-10 55.1 2.5 62 14-83 86-159 (164)
78 3ha9_A Uncharacterized thiored 97.8 2.9E-05 9.8E-10 53.3 4.7 54 15-84 109-163 (165)
79 3raz_A Thioredoxin-related pro 97.7 2.6E-05 8.9E-10 52.9 4.2 58 14-84 78-139 (151)
80 2lrt_A Uncharacterized protein 97.7 9.7E-06 3.3E-10 55.7 1.9 52 15-78 89-142 (152)
81 3hcz_A Possible thiol-disulfid 97.7 4.2E-05 1.4E-09 50.8 4.9 53 14-78 86-140 (148)
82 2hyx_A Protein DIPZ; thioredox 97.7 5.8E-05 2E-09 60.2 5.7 43 14-63 142-184 (352)
83 3or5_A Thiol:disulfide interch 97.6 7.6E-05 2.6E-09 50.6 5.2 48 14-63 89-136 (165)
84 4h86_A Peroxiredoxin type-2; o 97.6 3.9E-05 1.3E-09 57.6 3.8 48 15-64 132-182 (199)
85 4fo5_A Thioredoxin-like protei 97.5 6.3E-05 2.2E-09 50.5 3.3 40 14-60 87-130 (143)
86 2lja_A Putative thiol-disulfid 97.3 0.00072 2.5E-08 45.2 6.6 53 18-84 90-142 (152)
87 3eur_A Uncharacterized protein 97.3 0.00037 1.3E-08 46.6 4.7 42 14-61 89-131 (142)
88 3me7_A Putative uncharacterize 97.1 0.0005 1.7E-08 48.2 4.5 53 25-84 106-161 (170)
89 2p5q_A Glutathione peroxidase 97.1 0.00027 9.4E-09 48.2 3.0 45 14-63 95-153 (170)
90 2obi_A PHGPX, GPX-4, phospholi 97.1 0.00026 9E-09 49.7 3.0 48 14-62 109-168 (183)
91 2v1m_A Glutathione peroxidase; 97.1 0.00031 1.1E-08 47.8 3.2 48 14-63 94-152 (169)
92 3cmi_A Peroxiredoxin HYR1; thi 97.1 0.00028 9.5E-09 49.0 2.7 46 14-63 94-153 (171)
93 2r37_A Glutathione peroxidase 97.0 0.00016 5.4E-09 53.2 1.3 19 45-63 160-178 (207)
94 2i3y_A Epididymal secretory gl 97.0 0.00018 6.1E-09 53.4 1.3 32 45-83 178-209 (215)
95 2gs3_A PHGPX, GPX-4, phospholi 97.0 0.00043 1.5E-08 48.9 3.2 49 14-63 111-171 (185)
96 2vup_A Glutathione peroxidase- 96.8 0.00018 6.3E-09 51.0 -0.0 44 14-62 111-169 (190)
97 3dwv_A Glutathione peroxidase- 96.8 0.00025 8.6E-09 50.3 0.3 44 14-62 109-167 (187)
98 2f8a_A Glutathione peroxidase 96.7 0.0011 3.8E-08 48.3 3.3 20 44-63 173-192 (208)
99 2p31_A CL683, glutathione pero 96.7 0.00035 1.2E-08 49.1 0.5 56 14-83 112-179 (181)
100 2lus_A Thioredoxion; CR-Trp16, 95.6 0.00033 1.1E-08 46.3 0.0 37 18-61 90-126 (143)
101 1o8x_A Tryparedoxin, TRYX, TXN 96.3 0.00027 9.1E-09 47.5 -1.8 31 23-60 95-126 (146)
102 2ju5_A Thioredoxin disulfide i 96.2 0.0051 1.8E-07 42.2 4.1 45 26-83 106-150 (154)
103 1i5g_A Tryparedoxin II; electr 95.9 0.0013 4.3E-08 43.9 -0.0 31 23-60 95-126 (144)
104 1o73_A Tryparedoxin; electron 95.3 0.0029 9.8E-08 41.9 0.0 30 23-59 95-125 (144)
105 4hde_A SCO1/SENC family lipopr 95.3 0.026 9E-07 39.4 4.9 35 44-83 134-168 (170)
106 2l57_A Uncharacterized protein 95.2 0.046 1.6E-06 35.4 5.7 56 15-84 58-116 (126)
107 2kuc_A Putative disulphide-iso 95.1 0.034 1.2E-06 36.1 4.8 45 25-83 75-119 (130)
108 3fk8_A Disulphide isomerase; A 95.0 0.041 1.4E-06 36.0 4.9 36 23-62 75-110 (133)
109 3s9f_A Tryparedoxin; thioredox 94.8 0.0051 1.7E-07 42.6 -0.0 28 26-60 118-146 (165)
110 3kij_A Probable glutathione pe 93.7 0.06 2.1E-06 37.3 3.7 21 47-67 139-159 (180)
111 2fwh_A Thiol:disulfide interch 93.3 0.019 6.5E-07 38.2 0.5 47 24-84 79-127 (134)
112 3f9u_A Putative exported cytoc 92.1 0.034 1.2E-06 38.2 0.5 27 30-62 123-149 (172)
113 3hxs_A Thioredoxin, TRXP; elec 91.4 0.36 1.2E-05 31.5 5.0 53 16-83 84-137 (141)
114 2l5l_A Thioredoxin; structural 90.6 0.48 1.6E-05 31.1 5.1 53 16-83 71-124 (136)
115 2pu9_C TRX-F, thioredoxin F-ty 90.6 0.48 1.7E-05 29.6 4.8 44 24-83 66-109 (111)
116 2i4a_A Thioredoxin; acidophIle 90.1 0.68 2.3E-05 28.3 5.2 53 16-83 53-106 (107)
117 2trx_A Thioredoxin; electron t 89.3 0.82 2.8E-05 28.1 5.1 39 16-62 53-92 (108)
118 2voc_A Thioredoxin; electron t 89.2 0.5 1.7E-05 29.8 4.1 53 16-83 50-103 (112)
119 3ira_A Conserved protein; meth 88.4 0.98 3.4E-05 32.2 5.6 45 25-78 85-141 (173)
120 1thx_A Thioredoxin, thioredoxi 88.2 1 3.5E-05 27.8 5.1 53 16-83 58-111 (115)
121 3tco_A Thioredoxin (TRXA-1); d 87.6 0.93 3.2E-05 27.6 4.5 52 16-82 54-106 (109)
122 1oaz_A Thioredoxin 1; immune s 87.4 0.76 2.6E-05 29.9 4.2 47 22-83 75-121 (123)
123 1dby_A Chloroplast thioredoxin 87.1 1.9 6.5E-05 26.3 5.8 39 16-62 52-91 (107)
124 1faa_A Thioredoxin F; electron 86.7 0.94 3.2E-05 28.8 4.3 44 25-84 80-123 (124)
125 1nsw_A Thioredoxin, TRX; therm 86.3 0.75 2.6E-05 28.1 3.5 39 16-62 50-89 (105)
126 2e0q_A Thioredoxin; electron t 86.2 1.6 5.4E-05 26.1 5.0 39 16-62 48-87 (104)
127 3zzx_A Thioredoxin; oxidoreduc 86.1 1.2 4E-05 28.6 4.5 45 22-82 59-103 (105)
128 2yzu_A Thioredoxin; redox prot 85.8 1.5 5.2E-05 26.5 4.8 53 16-83 51-104 (109)
129 3hz4_A Thioredoxin; NYSGXRC, P 85.5 0.41 1.4E-05 31.7 2.1 69 16-99 57-132 (140)
130 1w4v_A Thioredoxin, mitochondr 85.5 1.6 5.4E-05 27.7 4.9 52 16-82 64-116 (119)
131 2es7_A Q8ZP25_salty, putative 85.5 0.46 1.6E-05 32.4 2.3 47 22-83 77-123 (142)
132 3die_A Thioredoxin, TRX; elect 85.1 1.5 5.2E-05 26.6 4.5 52 16-82 52-104 (106)
133 2o8v_B Thioredoxin 1; disulfid 85.0 0.99 3.4E-05 29.5 3.8 52 16-82 73-125 (128)
134 3f3q_A Thioredoxin-1; His TAG, 84.5 1.9 6.6E-05 26.9 4.9 39 16-62 56-95 (109)
135 1x5d_A Protein disulfide-isome 84.4 1.8 6.2E-05 27.5 4.8 53 16-83 62-115 (133)
136 3d22_A TRXH4, thioredoxin H-ty 84.4 0.75 2.6E-05 29.9 3.0 39 16-62 78-117 (139)
137 3qfa_C Thioredoxin; protein-pr 83.6 2.4 8.2E-05 26.8 5.2 51 16-82 63-114 (116)
138 4euy_A Uncharacterized protein 83.6 2.6 9E-05 25.9 5.2 47 22-83 57-103 (105)
139 2wz9_A Glutaredoxin-3; protein 83.2 2.2 7.5E-05 28.5 5.0 54 15-84 63-117 (153)
140 1fb6_A Thioredoxin M; electron 82.1 2.9 9.9E-05 25.2 4.9 40 16-63 51-91 (105)
141 3cxg_A Putative thioredoxin; m 82.0 1.8 6.2E-05 28.3 4.1 46 23-83 79-127 (133)
142 3q6o_A Sulfhydryl oxidase 1; p 81.7 1.6 5.4E-05 31.5 4.1 40 14-60 183-222 (244)
143 3gnj_A Thioredoxin domain prot 81.7 2.5 8.6E-05 25.8 4.5 52 16-82 55-107 (111)
144 2ppt_A Thioredoxin-2; thiredox 81.3 2.8 9.7E-05 28.3 5.0 52 16-82 97-149 (155)
145 3gix_A Thioredoxin-like protei 81.1 0.9 3.1E-05 30.7 2.4 31 23-61 64-94 (149)
146 1t00_A Thioredoxin, TRX; redox 80.8 2.9 9.9E-05 25.7 4.6 39 16-62 56-95 (112)
147 1xfl_A Thioredoxin H1; AT3G510 80.3 2.5 8.6E-05 27.2 4.3 45 23-83 78-122 (124)
148 3ph9_A Anterior gradient prote 80.0 0.71 2.4E-05 32.1 1.6 42 29-78 92-139 (151)
149 2vlu_A Thioredoxin, thioredoxi 80.0 2.8 9.4E-05 26.3 4.4 39 16-62 66-105 (122)
150 1ep7_A Thioredoxin CH1, H-type 79.9 1.2 4E-05 27.5 2.5 40 15-62 56-96 (112)
151 2l6c_A Thioredoxin; oxidoreduc 79.8 2.1 7.3E-05 26.7 3.8 54 15-83 50-104 (110)
152 2dml_A Protein disulfide-isome 79.5 0.62 2.1E-05 29.8 1.1 50 16-78 68-118 (130)
153 3emx_A Thioredoxin; structural 79.3 0.81 2.8E-05 30.0 1.7 33 23-63 79-111 (135)
154 2lst_A Thioredoxin; structural 80.6 0.38 1.3E-05 30.9 0.0 32 24-62 66-100 (130)
155 1v98_A Thioredoxin; oxidoreduc 79.2 3.7 0.00013 26.6 5.0 39 16-62 83-122 (140)
156 3ul3_B Thioredoxin, thioredoxi 79.0 2.6 8.8E-05 27.1 4.0 45 22-81 82-126 (128)
157 1xwb_A Thioredoxin; dimerizati 78.6 2.9 9.9E-05 25.2 4.0 32 23-62 61-92 (106)
158 2oe3_A Thioredoxin-3; electron 78.4 3.6 0.00012 26.0 4.6 39 16-62 62-101 (114)
159 2j23_A Thioredoxin; immune pro 78.3 4.1 0.00014 25.9 4.8 52 16-83 67-119 (121)
160 1ti3_A Thioredoxin H, PTTRXH1; 78.0 2.6 8.9E-05 25.8 3.7 39 16-62 58-97 (113)
161 2xc2_A Thioredoxinn; oxidoredu 77.5 3.8 0.00013 25.6 4.5 32 23-62 72-103 (117)
162 3p2a_A Thioredoxin 2, putative 77.0 7.5 0.00026 25.3 6.0 53 15-82 87-140 (148)
163 1sen_A Thioredoxin-like protei 76.7 0.98 3.4E-05 31.0 1.5 48 29-83 93-146 (164)
164 2vm1_A Thioredoxin, thioredoxi 76.0 5.2 0.00018 24.6 4.8 52 15-82 59-111 (118)
165 3uvt_A Thioredoxin domain-cont 75.3 4.4 0.00015 24.6 4.2 53 15-82 56-109 (111)
166 2vim_A Thioredoxin, TRX; thior 75.3 6.8 0.00023 23.4 5.1 52 15-82 50-102 (104)
167 3m9j_A Thioredoxin; oxidoreduc 75.1 2.2 7.5E-05 25.8 2.7 39 16-62 52-91 (105)
168 1gh2_A Thioredoxin-like protei 74.8 5.2 0.00018 24.4 4.5 39 16-62 53-92 (107)
169 3d6i_A Monothiol glutaredoxin- 74.6 2.5 8.5E-05 26.1 2.9 40 15-62 54-94 (112)
170 2dlx_A UBX domain-containing p 72.6 6 0.0002 27.4 4.8 41 29-83 93-134 (153)
171 1r26_A Thioredoxin; redox-acti 72.4 7.4 0.00025 25.1 5.0 52 16-83 69-121 (125)
172 1syr_A Thioredoxin; SGPP, stru 71.7 4.6 0.00016 25.0 3.7 52 16-83 58-110 (112)
173 3h79_A Thioredoxin-like protei 71.0 3.5 0.00012 26.3 3.1 55 16-83 71-126 (127)
174 2yj7_A LPBCA thioredoxin; oxid 73.4 0.88 3E-05 27.4 0.0 33 22-62 59-91 (106)
175 1u07_A TONB protein; beta-hair 70.1 6 0.0002 24.6 3.9 20 44-63 27-46 (90)
176 3aps_A DNAJ homolog subfamily 69.3 1.5 5.2E-05 27.6 1.0 36 15-57 53-89 (122)
177 3t58_A Sulfhydryl oxidase 1; o 69.2 11 0.00038 31.0 6.4 57 15-84 65-127 (519)
178 1x5e_A Thioredoxin domain cont 68.6 6.3 0.00022 24.8 3.9 54 15-84 55-109 (126)
179 1mek_A Protein disulfide isome 67.8 2.8 9.7E-05 25.7 2.0 45 24-83 69-115 (120)
180 3apq_A DNAJ homolog subfamily 66.5 4.8 0.00017 28.2 3.3 52 16-82 147-199 (210)
181 1nho_A Probable thioredoxin; b 65.8 10 0.00035 21.7 4.2 32 15-56 33-65 (85)
182 2qsi_A Putative hydrogenase ex 65.7 3.8 0.00013 28.3 2.5 40 16-63 68-108 (137)
183 2f51_A Thioredoxin; electron t 65.6 3.4 0.00012 26.2 2.1 41 15-62 54-98 (118)
184 3dxb_A Thioredoxin N-terminall 65.4 12 0.00041 26.4 5.2 48 22-84 70-117 (222)
185 3t58_A Sulfhydryl oxidase 1; o 64.8 5.6 0.00019 32.8 3.7 39 14-59 183-221 (519)
186 3q6o_A Sulfhydryl oxidase 1; p 64.3 17 0.00057 25.9 5.8 83 15-112 65-153 (244)
187 2k9k_A TONB2; metal transport; 63.9 13 0.00046 23.6 4.8 40 43-84 41-80 (106)
188 2dj1_A Protein disulfide-isome 63.6 6.6 0.00023 25.1 3.3 44 25-84 80-123 (140)
189 2i1u_A Thioredoxin, TRX, MPT46 63.6 9.8 0.00034 23.4 4.0 52 16-82 63-115 (121)
190 1qgv_A Spliceosomal protein U5 59.7 6.3 0.00022 26.1 2.7 32 23-62 64-95 (142)
191 1a8l_A Protein disulfide oxido 59.1 27 0.00092 24.1 6.1 53 15-82 170-223 (226)
192 1fo5_A Thioredoxin; disulfide 58.6 8.2 0.00028 22.2 2.8 32 15-56 34-66 (85)
193 3qou_A Protein YBBN; thioredox 57.1 8.7 0.0003 27.9 3.3 39 16-62 59-98 (287)
194 2dj3_A Protein disulfide-isome 55.1 4.7 0.00016 25.6 1.3 48 25-84 70-117 (133)
195 2qgv_A Hydrogenase-1 operon pr 53.5 7.1 0.00024 27.0 2.1 34 22-63 77-110 (140)
196 1zma_A Bacterocin transport ac 50.8 14 0.00047 22.9 3.1 26 27-60 78-103 (118)
197 2dj0_A Thioredoxin-related tra 49.9 28 0.00097 22.1 4.6 48 15-64 59-107 (137)
198 2jnz_A PHL P 3 allergen; timot 49.4 5.4 0.00018 26.8 0.9 11 87-97 92-102 (108)
199 1z6n_A Hypothetical protein PA 48.7 8.2 0.00028 26.8 1.8 41 16-60 86-127 (167)
200 3ft1_A PHL P 3 allergen; beta- 48.6 5.8 0.0002 26.1 1.0 11 87-97 81-91 (100)
201 2grx_C Protein TONB; beta barr 47.9 30 0.001 25.9 5.0 38 44-83 166-203 (229)
202 1bmw_A PHL P II, pollen allerg 46.1 6.9 0.00023 25.5 1.0 11 87-97 80-90 (96)
203 3idv_A Protein disulfide-isome 45.2 67 0.0023 22.0 6.3 52 16-83 68-120 (241)
204 1ilo_A Conserved hypothetical 44.4 19 0.00064 20.3 2.7 24 25-58 39-62 (77)
205 1lr0_A TOLA protein; domain-sw 42.3 34 0.0012 22.9 4.2 42 41-84 51-92 (129)
206 3a0s_A Sensor protein; PAS-fol 42.3 17 0.00058 19.6 2.3 14 46-59 4-17 (96)
207 4hi4_A Aerotaxis transducer AE 41.5 17 0.00057 22.3 2.3 15 45-59 16-30 (121)
208 1wmj_A Thioredoxin H-type; str 41.3 5.2 0.00018 25.1 -0.2 45 23-83 76-120 (130)
209 3b33_A Sensor protein; structu 41.0 21 0.00072 21.0 2.7 15 45-59 18-32 (115)
210 2dbc_A PDCL2, unnamed protein 40.1 34 0.0012 22.0 3.8 38 43-84 80-120 (135)
211 1wou_A Thioredoxin -related pr 38.8 24 0.00081 22.3 2.8 25 23-54 79-103 (123)
212 3ihg_A RDME; flavoenzyme, anth 38.1 62 0.0021 25.7 5.8 19 43-61 497-515 (535)
213 2a4x_A Mitomycin-binding prote 35.7 46 0.0016 20.9 3.9 23 44-67 110-132 (138)
214 3olo_A Two-component sensor hi 34.9 30 0.001 19.9 2.6 15 45-59 24-38 (118)
215 3fg8_A Uncharacterized protein 34.4 30 0.001 20.9 2.7 15 45-59 23-37 (118)
216 3fcd_A Lyase, ORF125EGC139; la 33.2 62 0.0021 20.3 4.2 21 43-63 105-125 (134)
217 2k8s_A Thioredoxin; dimer, str 32.6 43 0.0015 19.3 3.1 24 26-59 45-68 (80)
218 2gj3_A Nitrogen fixation regul 32.6 34 0.0012 20.4 2.7 14 46-59 17-30 (120)
219 3fc7_A HTR-like protein, senso 32.5 28 0.00097 20.3 2.3 15 45-59 30-44 (125)
220 1ll8_A PAS kinase; PAS domain, 32.0 30 0.001 20.4 2.3 15 45-59 9-24 (114)
221 2hls_A Protein disulfide oxido 31.3 82 0.0028 22.5 5.0 50 15-83 174-224 (243)
222 3mfx_A Sensory BOX/ggdef famil 30.9 29 0.001 22.3 2.3 16 45-60 18-33 (129)
223 2vv6_A FIXL, sensor protein FI 30.8 31 0.0011 20.5 2.3 14 46-59 5-18 (119)
224 3iv4_A Putative oxidoreductase 28.7 68 0.0023 21.2 3.8 28 29-62 72-99 (112)
225 2av4_A Thioredoxin-like protei 28.6 22 0.00076 25.2 1.4 30 23-60 82-111 (160)
226 2r78_A Sensor protein; sensory 28.6 42 0.0014 20.1 2.6 14 46-59 23-36 (117)
227 3dml_A Putative uncharacterize 28.5 26 0.00087 23.2 1.7 28 29-63 68-95 (116)
228 2rk0_A Glyoxalase/bleomycin re 28.2 85 0.0029 19.4 4.2 18 45-62 110-127 (136)
229 2qkp_A Uncharacterized protein 27.8 34 0.0012 22.8 2.3 18 45-62 30-47 (151)
230 4gym_A Glyoxalase/bleomycin re 27.4 75 0.0026 20.2 3.9 18 44-61 115-132 (149)
231 3kol_A Oxidoreductase, glyoxal 27.3 68 0.0023 20.0 3.6 20 44-63 133-152 (156)
232 3bwl_A Sensor protein; structu 26.7 49 0.0017 19.5 2.7 14 46-59 29-42 (126)
233 4dvc_A Thiol:disulfide interch 26.1 1E+02 0.0035 20.1 4.5 40 29-84 142-181 (184)
234 1d06_A Nitrogen fixation regul 25.8 42 0.0014 20.3 2.3 15 45-59 27-41 (130)
235 3kp8_A Vkorc1/thioredoxin doma 25.7 52 0.0018 20.5 2.7 23 24-56 54-76 (106)
236 2qnt_A AGR_C_3434P, uncharacte 25.3 79 0.0027 19.6 3.6 19 44-62 109-127 (141)
237 2r2j_A Thioredoxin domain-cont 25.1 60 0.002 24.8 3.4 53 16-82 61-114 (382)
238 3luq_A Sensor protein; PAS, hi 24.8 49 0.0017 18.6 2.3 15 45-59 14-28 (114)
239 3mxq_A Sensor protein; PSI2, M 24.3 44 0.0015 22.5 2.3 15 45-59 33-47 (152)
240 3cwf_A Alkaline phosphatase sy 24.2 39 0.0013 21.3 1.9 14 47-60 51-64 (122)
241 3lyx_A Sensory BOX/ggdef domai 24.1 52 0.0018 18.3 2.3 15 45-59 18-32 (124)
242 1sji_A Calsequestrin 2, calseq 24.0 64 0.0022 24.2 3.4 53 15-83 67-120 (350)
243 3vol_A Aerotaxis transducer AE 24.0 43 0.0015 23.7 2.3 15 45-59 33-47 (233)
244 3ga4_A Dolichyl-diphosphooligo 23.8 63 0.0022 22.8 3.1 62 23-95 90-166 (178)
245 2rbb_A Glyoxalase/bleomycin re 23.6 82 0.0028 19.7 3.4 19 44-62 114-132 (141)
246 3huh_A Virulence protein STM31 23.5 81 0.0028 20.0 3.4 20 44-63 125-144 (152)
247 3mjq_A Uncharacterized protein 23.4 51 0.0018 19.0 2.3 15 45-59 10-24 (126)
248 1ecs_A Bleomycin resistance pr 22.4 1E+02 0.0034 18.9 3.7 18 44-61 101-118 (126)
249 3kzq_A Putative uncharacterize 22.2 1.3E+02 0.0044 20.6 4.5 30 47-83 172-201 (208)
250 2p25_A Glyoxalase family prote 22.1 84 0.0029 18.7 3.2 16 44-59 109-124 (126)
251 2vlg_A Sporulation kinase A; h 21.7 66 0.0023 20.0 2.6 15 46-60 11-25 (111)
252 3ed3_A Protein disulfide-isome 21.5 1E+02 0.0035 22.8 4.1 23 25-55 80-102 (298)
253 3sk2_A EHPR; antibiotic resist 21.4 85 0.0029 19.4 3.2 17 45-61 114-130 (132)
254 2zyz_A Putative uncharacterize 21.3 86 0.0029 20.9 3.2 25 45-69 85-110 (116)
255 3ey7_A Biphenyl-2,3-DIOL 1,2-d 21.3 1.1E+02 0.0038 18.4 3.6 17 45-61 113-129 (133)
256 1qto_A Bleomycin-binding prote 21.0 87 0.003 19.1 3.1 16 45-60 104-119 (122)
257 1w63_Q Adapter-related protein 20.9 1E+02 0.0035 21.0 3.7 21 44-64 2-22 (158)
258 1xrk_A Bleomycin resistance pr 20.8 90 0.0031 19.1 3.2 16 45-60 104-119 (124)
259 3rri_A Glyoxalase/bleomycin re 20.5 1.1E+02 0.0036 18.8 3.5 19 44-62 110-128 (135)
260 3apo_A DNAJ homolog subfamily 20.3 25 0.00086 29.5 0.4 58 15-83 707-765 (780)
No 1
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-34 Score=217.63 Aligned_cols=110 Identities=44% Similarity=0.747 Sum_probs=105.6
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|+++.+..+|+ .+++||||||++++ ++++||++.++.|++.|+|||||++|+|+++++++.+.+||++| +||. |
T Consensus 103 w~~~~~~~~~~--~~l~fpllsD~~~~-vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dE--iLr~-l 176 (216)
T 3sbc_A 103 WTNIPRKEGGL--GPINIPLLADTNHS-LSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDE--ALRL-V 176 (216)
T ss_dssp HHTSCGGGTCC--CSCSSCEEECTTSH-HHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-H
T ss_pred HHHHHHHhCCc--cCcccceEeCCCCH-HHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHH--HHHH-H
Confidence 77888889999 89999999999999 99999999988899999999999999999999999999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhccC
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKVNK 116 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~ 116 (116)
++||+. ++|||||+||+++|+|+++.+++||++++|
T Consensus 177 ~AlQ~~~~~~~~~Pa~W~~G~~~i~p~~~~~~~~~~~~~~ 216 (216)
T 3sbc_A 177 EAFQWTDKNGTVLPCNWTPGAATIKPTVEDSKEYFEAANK 216 (216)
T ss_dssp HHHHHHHHHCCBBCTTCCTTSCCBCCSTTTHHHHHHHHCC
T ss_pred HHhhhHhhcCCCcCCCCCCCCceecCCHHHHHHHHHHccC
Confidence 999966 899999999999999999999999999886
No 2
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=99.97 E-value=2.7e-32 Score=208.28 Aligned_cols=107 Identities=46% Similarity=0.825 Sum_probs=75.8
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|+...+.++++ .+++||||||++++ ++++|||+.+..|++.|+|||||++|+|+++++++.+.+||++| +||. |
T Consensus 107 w~~~~~~~~~~--~~l~fpllsD~~~~-va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~E--vLr~-l 180 (219)
T 3tue_A 107 WTLQDRKKGGL--GTMAIPILADKTKN-IARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEE--VLRL-L 180 (219)
T ss_dssp HHHSCGGGTCC--CSCSSCEEECTTSH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-H
T ss_pred HhhhhHHhcCc--cccccccccCcccH-HHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHH--HHHH-H
Confidence 66777888999 89999999999999 99999999988899999999999999999999999999999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHH-Hhhh
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKE-YFNK 113 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~-~~~~ 113 (116)
++||+. ++|||||+||+++|+|+|+.+++ ||++
T Consensus 181 ~aLQ~~~~~~~~~Pa~W~~G~~~i~p~~~~~~e~y~~k 218 (219)
T 3tue_A 181 EAFQFVEKHGEVCPANWKKGDPGMKPEPNASVEGYFSK 218 (219)
T ss_dssp HHHHHHHHC-----------------------------
T ss_pred HHhhhHHhcCCCcCCCCCCCCccccCCCccchhhhccC
Confidence 999975 99999999999999999988775 9986
No 3
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=99.91 E-value=2.6e-25 Score=171.05 Aligned_cols=109 Identities=42% Similarity=0.704 Sum_probs=71.4
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|++..++.+|+ .+++||+++|.+++ ++++||+..+..|.+.|++||||++|+|++++.++...++++++ +|+. |
T Consensus 142 ~~~~~~~~~g~--~~~~fp~l~D~~~~-va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~e--il~~-L 215 (254)
T 3tjj_A 142 WINTPRRQGGL--GPIRIPLLSDLTHQ-ISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE--TLRL-V 215 (254)
T ss_dssp HHTSCGGGTSC--CSCSSCEEECTTSH-HHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-H
T ss_pred HHHHHHHhcCC--cccccceeeCcHHH-HHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-H
Confidence 44555667788 78999999999999 99999999877788899999999999999999988888999999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhcc
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKVN 115 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 115 (116)
++++.. ++||+||+||+++|.|+|..+++||.++|
T Consensus 216 ~alq~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 254 (254)
T 3tjj_A 216 QAFQYTDKHGEVAPAGWKPGSETIIPDPAGKLKYFDKLN 254 (254)
T ss_dssp HHHHHHHHHC-----------------------------
T ss_pred HhhccccccCccccCCCCCCCceeccChhHHHHHhhccC
Confidence 999865 99999999999999999999999998865
No 4
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=99.90 E-value=5.7e-24 Score=161.72 Aligned_cols=108 Identities=44% Similarity=0.740 Sum_probs=95.9
Q ss_pred CcccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 1 MCLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 1 ~~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
|++..++.+|+ .+++||+++|.+++ ++++||+..+..|...|++||||++|+|++++.++...++++++ +|+. |
T Consensus 128 ~~~~~~~~~~~--~~~~fp~l~D~~~~-v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~e--il~~-l 201 (240)
T 3qpm_A 128 WIITPRKQGGL--GPMKIPLLSDLTHQ-ISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDE--TLRL-V 201 (240)
T ss_dssp HHHSCGGGTCC--CSCSSCEEECTTSH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-H
T ss_pred HHHHHHhhcCC--CCCceeEEeCchHH-HHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHH--HHHH-H
Confidence 34445566777 78999999999999 99999999777787889999999999999999988888889999 9999 9
Q ss_pred hhhCcC----ccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 81 SSFGLF----SVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
++++.. .+||+||+||+++|.|++..+++||.++
T Consensus 202 ~~lq~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~ 239 (240)
T 3qpm_A 202 QAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLKYFDKM 239 (240)
T ss_dssp HHHHHHHHHSCBBCTTCCTTSCCBCSSTTTTHHHHC--
T ss_pred HHhhhhhhcCCccCCCCCCCCceecCCHHHHHHHHhhc
Confidence 999865 8999999999999999999999999875
No 5
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=99.87 E-value=3.3e-22 Score=148.87 Aligned_cols=105 Identities=28% Similarity=0.539 Sum_probs=92.1
Q ss_pred ccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 3 LRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 3 ~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+..++.+|+ .+++||+++|.+++ ++++||+.. +.|...|++||||++|+|++.+.+....+++.++ +++. |++
T Consensus 105 ~~~~~~~g~--~~~~fp~l~D~~~~-~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~e--ll~~-l~~ 177 (213)
T 2i81_A 105 KTPLAKGGI--GNIKHTLLSDITKS-ISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDE--ILRI-IDA 177 (213)
T ss_dssp SSCGGGTCC--CSCSSEEEECTTSH-HHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-HHH
T ss_pred HHHHhhCCc--cCCCceEEECCchH-HHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHH
Confidence 334455677 78999999999999 999999986 4577789999999999999999887777889999 9999 999
Q ss_pred hCc----CccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 83 FGL----FSVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 83 l~~----~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
++. .+.||++|+||+++|.|+++..++||+++
T Consensus 178 l~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~~ 213 (213)
T 2i81_A 178 IQHHEKYGDVCPANWQKGKVSMKPSEEGVAQYLSTL 213 (213)
T ss_dssp HHHHHHHCCBCCTTCCTTSCCBCSSTTTHHHHTTC-
T ss_pred HHhhhhcCCCcCCCCCcCCccccCCchhHHHHhhcC
Confidence 884 39999999999999999999999999864
No 6
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=149.17 Aligned_cols=103 Identities=45% Similarity=0.784 Sum_probs=90.9
Q ss_pred cccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc
Q psy11208 6 LKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL 85 (116)
Q Consensus 6 ~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~ 85 (116)
.+.+|+ .+++||+++|.+++ ++++||+..+..|...|++||||++|+|++++.+....++++++ +++. |++|+.
T Consensus 104 ~~~~g~--~~~~fp~l~D~~~~-~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~e--ll~~-l~~l~~ 177 (211)
T 2pn8_A 104 RRQGGL--GPIRIPLLSDLTHQ-ISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE--TLRL-VQAFQY 177 (211)
T ss_dssp GGGTCC--CSCSSCEEECTTSH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHHHH
T ss_pred hhccCc--cCCceEEEECCchH-HHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHHhhh
Confidence 344566 68999999999999 99999998665666789999999999999999887777789999 9999 999875
Q ss_pred C----ccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 86 F----SVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 86 ~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
. ..||+||+||+++|.|+++..++||+++
T Consensus 178 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 210 (211)
T 2pn8_A 178 TDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKL 210 (211)
T ss_dssp HHHHCCBBCTTCCTTSCCBCSSTTTHHHHHCC-
T ss_pred cccCCcccCCCCCCCCccccCCchhHHHHhhhc
Confidence 4 9999999999999999999999999874
No 7
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=99.87 E-value=3.6e-22 Score=146.02 Aligned_cols=104 Identities=46% Similarity=0.792 Sum_probs=92.0
Q ss_pred cccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc
Q psy11208 6 LKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL 85 (116)
Q Consensus 6 ~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~ 85 (116)
.+.+|+ .+++||+++|.+++ ++++||+.....|...|++||||++|+|++++.+....+++.++ +++. |++++.
T Consensus 92 ~~~~~~--~~~~~p~l~D~~~~-~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e--ll~~-l~~l~~ 165 (202)
T 1uul_A 92 RKRGGL--GQMNIPILADKTKC-IMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDE--ALRL-VKAFQF 165 (202)
T ss_dssp GGGTCC--CSCSSCEEECTTCH-HHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHHHH
T ss_pred HhhCCC--CCCceeEEECCchH-HHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHH--HHHH-HHHhhh
Confidence 344667 78999999999999 99999998766677899999999999999999887777889999 9999 999884
Q ss_pred ----CccccCCCCCCCCCccCChhhHHHHhhhcc
Q psy11208 86 ----FSVCPANWKPDSPTIKPSPAESKEYFNKVN 115 (116)
Q Consensus 86 ----~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 115 (116)
.+.||+||++|+++|.|+++..++||+++.
T Consensus 166 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 199 (202)
T 1uul_A 166 VEKHGEVCPANWKPGDKTMKPDPEKSKEYFGAVA 199 (202)
T ss_dssp HHHHSCBBCTTCCTTSCCBCSSTGGGHHHHCC--
T ss_pred hhhcCCccCCCcCCCCceeccChhhHHHHHhhhh
Confidence 399999999999999999999999998764
No 8
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=99.86 E-value=3.1e-22 Score=149.43 Aligned_cols=108 Identities=45% Similarity=0.836 Sum_probs=67.3
Q ss_pred ccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 3 LRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 3 ~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+..++.+|+ .+++||+++|.+++ ++++||+..+..|...|++||||++|+|++.+.+..+.+++.++ +++. |++
T Consensus 109 ~~~~~~~g~--~~~~fp~l~D~~~~-i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~e--ll~~-l~~ 182 (220)
T 1zye_A 109 NTPRKNGGL--GHMNIALLSDLTKQ-ISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEE--TLRL-VKA 182 (220)
T ss_dssp TSCGGGTCC--CSCSSEEEECTTSH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-HHH
T ss_pred HHHHHhCCC--cCCceEEEECCcHH-HHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHH
Confidence 334455677 78999999999999 99999998776677889999999999999999888778889999 9999 998
Q ss_pred hCcC----ccccCCCCCCCCCccCChhhHHHHhhhccC
Q psy11208 83 FGLF----SVCPANWKPDSPTIKPSPAESKEYFNKVNK 116 (116)
Q Consensus 83 l~~~----~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~ 116 (116)
|+.. +.||+||+||+++|.|+++.+++||.++++
T Consensus 183 l~~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~~ 220 (220)
T 1zye_A 183 FQFVEAHGEVSPANWTPESPTIKPHPTASREYFEKVNQ 220 (220)
T ss_dssp HHHTTC--------------------------------
T ss_pred hhhhcccCCccCCCCCCCCceecCCHHHHHHHHHhhcC
Confidence 8744 999999999999999999999999998764
No 9
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=99.86 E-value=1.4e-21 Score=142.14 Aligned_cols=105 Identities=49% Similarity=0.778 Sum_probs=92.7
Q ss_pred cccccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 4 RSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 4 ~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
...+..|+ .+++||+++|.+++ ++++||+.....|...|++||||++|+|++.+.+..+.+++.++ +++. |+++
T Consensus 88 ~~~~~~~~--~~~~~p~l~D~~~~-~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e--~l~~-l~~l 161 (197)
T 1qmv_A 88 TPRKEGGL--GPLNIPLLADVTRR-LSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDE--ALRL-VQAF 161 (197)
T ss_dssp SCGGGTCC--CSCSSCEEECTTCH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHH
T ss_pred HHHhhCCC--CCCceEEEECCcHH-HHHHcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHH--HHHH-HHhc
Confidence 33444566 68999999999999 99999998766677789999999999999999887777889999 9999 9998
Q ss_pred Cc----CccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 84 GL----FSVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 84 ~~----~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
+. ...||+||+||+++|.|+++..++||+++
T Consensus 162 ~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~~ 196 (197)
T 1qmv_A 162 QYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKH 196 (197)
T ss_dssp HHHHHHCCBBCTTCCTTSCCBCSSHHHHHHHHHHH
T ss_pred chhhccCCccCCCcCcCCccccCCccchhhHhhcc
Confidence 74 39999999999999999999999999885
No 10
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=99.84 E-value=2.5e-21 Score=145.79 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=84.1
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC----C--CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC-
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP----A--GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~----~--G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~- 86 (116)
.+++||+++|.+++ ++++||+..+. . +.+.|++||||++|+|++++.++...+++++| +|+. |++|+..
T Consensus 96 ~~~~fpil~D~~~~-va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~e--il~~-i~~l~~~~ 171 (224)
T 1prx_A 96 EKLPFPIIDDRNRE-LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDE--ILRV-VISLQLTA 171 (224)
T ss_dssp SCCSSCEEECTTCH-HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHH--HHHH-HHHHHHHH
T ss_pred cCcCcceeecCchH-HHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHHHHhhc
Confidence 47899999999999 99999997542 1 35689999999999999999988888899999 9999 9999876
Q ss_pred ---ccccCCCCCCCCCccCC---hhhHHHHhhh
Q psy11208 87 ---SVCPANWKPDSPTIKPS---PAESKEYFNK 113 (116)
Q Consensus 87 ---~~~p~~w~~g~~~~~~~---~~~~~~~~~~ 113 (116)
.+||+||+||+++|.|+ ..+++++|.+
T Consensus 172 ~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~ 204 (224)
T 1prx_A 172 EKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPK 204 (224)
T ss_dssp HHCEEBCTTCCTTSCEEECTTSCHHHHHHHCTT
T ss_pred cCCcCCCCCCCCCCceEeCCCCCHHHHHHhhcc
Confidence 89999999999999887 3777888854
No 11
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=99.84 E-value=2.8e-21 Score=139.79 Aligned_cols=102 Identities=27% Similarity=0.564 Sum_probs=73.6
Q ss_pred cccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc
Q psy11208 6 LKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL 85 (116)
Q Consensus 6 ~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~ 85 (116)
.+.+|+ .+++||+++|.++. ++++||+.. ..|...|++||||++|+|++.+.+....+++.++ +++. |++++.
T Consensus 87 ~~~~~~--~~~~~~~l~D~~~~-~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~--l~~~-l~~l~~ 159 (192)
T 2h01_A 87 LSQGGI--GNIKHTLISDISKS-IARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDE--ILRL-IDALQH 159 (192)
T ss_dssp GGGTCC--CSCSSEEEECTTSH-HHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHH--HHHH-HHHHHH
T ss_pred HhhCCc--cCCCcCeEECCcHH-HHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHH--HHHH-HHHHhh
Confidence 344566 78999999999999 999999986 4566789999999999999999887777788999 9999 999885
Q ss_pred ----CccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 86 ----FSVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 86 ----~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
.+.||+||+||+++|.|+++..++||+++
T Consensus 160 ~~~~~~~cp~~w~~~~~~~~~~~~~~~~~~~~~ 192 (192)
T 2h01_A 160 HEKYGDVCPANWQKGKESMKPSEEGVAKYLSNL 192 (192)
T ss_dssp HHHHCCCCCSSCCCC------------------
T ss_pred hhhcCCCccCCCCCCCccccCCchhhhhHhhcC
Confidence 39999999999999999999999999763
No 12
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=99.83 E-value=3e-21 Score=148.81 Aligned_cols=103 Identities=21% Similarity=0.436 Sum_probs=87.5
Q ss_pred cccccccCCccccccceEEEEeCCChHHHHHhCCCccCCCC-cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 2 CLRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGI-PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 2 ~~~~~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~-~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
+++..+.+|. +++||+++|.+++ ++++||+..+..|. +.|++||||++|+|+++.+++.+.+|+++| +++. |
T Consensus 85 ~~~~~~~~~~---~i~fPil~D~~~~-ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~E--llr~-I 157 (249)
T 3a2v_A 85 KEWIERHIGV---RIPFPIIADPQGT-VARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDE--ILRI-V 157 (249)
T ss_dssp HHHHHHHTCC---CCCSCEEECTTSH-HHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-H
T ss_pred HHHHHHhcCC---CCceeEEECCchH-HHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHH--HHHH-H
Confidence 3334444444 8999999999999 99999998776665 889999999999999999988888999999 9999 9
Q ss_pred hhhCcC----ccccCCCCC-----CCCCccCCh---hhHHHHhh
Q psy11208 81 SSFGLF----SVCPANWKP-----DSPTIKPSP---AESKEYFN 112 (116)
Q Consensus 81 ~~l~~~----~~~p~~w~~-----g~~~~~~~~---~~~~~~~~ 112 (116)
++++.. ++||+|| | |+++|.|++ ++.++.|.
T Consensus 158 ~alq~~~~~~~~~Pa~W-~~~~~~g~~~~~~~~~~~~~~~~~~~ 200 (249)
T 3a2v_A 158 KALKLGDSLKRAVPADW-PNNEIIGEGLIVPPPTTEDQARARME 200 (249)
T ss_dssp HHHHHHHHHTCBBCTTT-TSBTTTBTCEEECCCCSHHHHHHHHH
T ss_pred HHHHhccccCccCCCCC-CCCCCCCCCeecCCCCCHHHHHHhcc
Confidence 999875 9999999 9 999999996 44455554
No 13
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=99.83 E-value=1.8e-21 Score=148.14 Aligned_cols=95 Identities=22% Similarity=0.419 Sum_probs=83.0
Q ss_pred ccceEEEEeCCChHHHHHhCCCccC----C--CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC--
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEP----A--GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF-- 86 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~----~--G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~-- 86 (116)
+++||+++|.+++ ++++||+..+. . +.+.|++||||++|+|++++.++...+|+++| +|+. |++|+..
T Consensus 93 ~~~fpil~D~~~~-va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~e--ilr~-l~~Lq~~~~ 168 (233)
T 2v2g_A 93 DMPYPIIADETRE-LAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSE--ILRV-IDSLQLTAQ 168 (233)
T ss_dssp SCSSCEEECTTCH-HHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHHHHHHH
T ss_pred CCceEEEECChHH-HHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHHHHhhcc
Confidence 7899999999999 99999997432 1 34689999999999999999988888999999 9999 9999876
Q ss_pred --ccccCCCCCCCCCccCCh---hhHHHHhhh
Q psy11208 87 --SVCPANWKPDSPTIKPSP---AESKEYFNK 113 (116)
Q Consensus 87 --~~~p~~w~~g~~~~~~~~---~~~~~~~~~ 113 (116)
.+||+||+||+++|.|++ .+++++|.+
T Consensus 169 ~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~ 200 (233)
T 2v2g_A 169 KKVATPADWQPGDRCMVVPGVSAEEAKTLFPN 200 (233)
T ss_dssp SSEEBCTTCCTTSCEEECTTSCHHHHHHHCTT
T ss_pred CCccCCCCcCcCCceEeCCCCCHHHHHHhcCC
Confidence 899999999999998874 667777754
No 14
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=99.83 E-value=5.9e-21 Score=143.50 Aligned_cols=101 Identities=37% Similarity=0.619 Sum_probs=66.2
Q ss_pred cCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC-
Q psy11208 8 KGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF- 86 (116)
Q Consensus 8 ~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~- 86 (116)
.+|+ .+++||+++|.+++ ++++||+. ...|...|++||||++|+|++.+.+....+++.++ +++. |++|+..
T Consensus 114 ~~g~--~~~~fp~l~D~~~~-~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~e--ll~~-l~~L~~~~ 186 (221)
T 2c0d_A 114 KGGI--GNVEFTLVSDINKD-ISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQE--VLRT-IDSIIHVD 186 (221)
T ss_dssp GTCC--CSCSSEEEECTTSH-HHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-HHHHHHHH
T ss_pred hcCc--cCCceEEEECCchH-HHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHHhhhh
Confidence 3466 68899999999999 99999998 55566789999999999999999887766788999 9999 9998754
Q ss_pred ---ccccCCCCCCCCCccCChhhHHHHhhhcc
Q psy11208 87 ---SVCPANWKPDSPTIKPSPAESKEYFNKVN 115 (116)
Q Consensus 87 ---~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 115 (116)
..||++|++|+++|.|++...++||+++.
T Consensus 187 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 218 (221)
T 2c0d_A 187 TSGEVCPINWKKGQKAFKPTTESLIDYMNNAN 218 (221)
T ss_dssp HHCCSCC-------------------------
T ss_pred cCCCcCCCCCCCCCccccCCcHHHHHHHHhcc
Confidence 99999999999999999999999998753
No 15
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=99.83 E-value=5.3e-21 Score=143.65 Aligned_cols=94 Identities=19% Similarity=0.375 Sum_probs=82.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC----CC--CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC-
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP----AG--IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~----~G--~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~- 86 (116)
.+++||+++|.+++ ++++||+..+. .| .+.|++||||++|+|++++.++.+.+++++| +++. |++|+..
T Consensus 93 ~~~~fpil~D~~~~-va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~e--ll~~-i~~lq~~~ 168 (220)
T 1xcc_A 93 NKWEIPIVCDESRE-LANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHE--ILRV-LKSLQLTY 168 (220)
T ss_dssp SCCCCCEEECTTSH-HHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHHHHHH
T ss_pred CCCcceeEECchhH-HHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHHHHhhh
Confidence 57899999999999 99999997532 12 4689999999999999999988888899999 9999 9999876
Q ss_pred ---ccccCCCCCCCCCccCC---hhhHHHHh
Q psy11208 87 ---SVCPANWKPDSPTIKPS---PAESKEYF 111 (116)
Q Consensus 87 ---~~~p~~w~~g~~~~~~~---~~~~~~~~ 111 (116)
.+||+||+||+++|.|+ ..+++++|
T Consensus 169 ~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~ 199 (220)
T 1xcc_A 169 TTPVATPVNWNEGDKCCVIPTLQDDEISKHF 199 (220)
T ss_dssp HSSEEBCTTCCTTSCEEECTTCCGGGHHHHC
T ss_pred cCCcccCCCcCcCCceEeCCCCCHHHHHHHh
Confidence 89999999999999887 47778887
No 16
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=99.79 E-value=2.2e-19 Score=130.31 Aligned_cols=88 Identities=24% Similarity=0.473 Sum_probs=78.6
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc-----Ccc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL-----FSV 88 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~-----~~~ 88 (116)
.+++||+++|.+++ ++++||+.....|...|++||||++|+|++++......+++.++ +++. |++|+. .+.
T Consensus 89 ~~~~fp~l~D~~~~-~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~--l~~~-l~~l~~~~~~p~~~ 164 (186)
T 1n8j_A 89 AKIKYAMIGDPTGA-LTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASD--LLRK-IKAAQYVAAHPGEV 164 (186)
T ss_dssp GGCCSEEEECTTSH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH--HHHH-HHHHHHHHHSTTCB
T ss_pred cCCceeEEECCchH-HHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHHHHHhhcCCCc
Confidence 58999999999999 99999998655566689999999999999999877666778999 9999 998876 489
Q ss_pred ccCCCCCCCCCccCChh
Q psy11208 89 CPANWKPDSPTIKPSPA 105 (116)
Q Consensus 89 ~p~~w~~g~~~~~~~~~ 105 (116)
||+||++|+++|+++++
T Consensus 165 ~p~~w~~~~~~~~~~~~ 181 (186)
T 1n8j_A 165 CPAKWKEGEATLAPSLD 181 (186)
T ss_dssp BCTTCCTTSCCBCCSST
T ss_pred cCCCCCCCCccccCChH
Confidence 99999999999999876
No 17
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=99.75 E-value=2.2e-18 Score=128.49 Aligned_cols=93 Identities=41% Similarity=0.733 Sum_probs=81.1
Q ss_pred ccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC
Q psy11208 7 KKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF 86 (116)
Q Consensus 7 ~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~ 86 (116)
+..++ .+++|++++|.++. ++++||+.....|...|++||||++|+|++.+.......+++++ +|+. |++++..
T Consensus 126 ~~~~~--~~~~~~~l~D~~~~-~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~--il~~-l~~l~~~ 199 (222)
T 3ztl_A 126 KSGGL--GHMKIPLLADRKQE-ISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDE--TLRL-LDAFQFV 199 (222)
T ss_dssp GGTSC--CSCSSCEEECSSSH-HHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHH--HHHH-HHHHHHH
T ss_pred hhccc--cccceeEEeCCchH-HHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHhhcc
Confidence 34455 68999999999999 99999999777787899999999999999999887777778999 9999 9998866
Q ss_pred ----ccccCCCCCCCCCccCChh
Q psy11208 87 ----SVCPANWKPDSPTIKPSPA 105 (116)
Q Consensus 87 ----~~~p~~w~~g~~~~~~~~~ 105 (116)
..||++|+||+++|.|+|+
T Consensus 200 ~~~~~~c~~~w~~~~~~~~~~~~ 222 (222)
T 3ztl_A 200 EKHGEVCPVNWKRGQHGIKVNQK 222 (222)
T ss_dssp HHHSCBBCTTCCTTSCCBCC---
T ss_pred cccCccCCcCcCCCCccccCCCC
Confidence 9999999999999999874
No 18
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=99.72 E-value=4.8e-18 Score=123.25 Aligned_cols=102 Identities=26% Similarity=0.478 Sum_probs=65.8
Q ss_pred cccCCccccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc
Q psy11208 6 LKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL 85 (116)
Q Consensus 6 ~~~~~~~~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~ 85 (116)
.+..|+ ++++||+++|.++. ++++||+..+ .|...|++||||++|+|++.+.+....+++.++ +++. |++++.
T Consensus 89 ~~~~~~--~~~~~~~~~d~~~~-~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~--l~~~-l~~l~~ 161 (198)
T 1zof_A 89 VEKGGI--GQVSFPMVADITKS-ISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADE--MLRM-VDALLH 161 (198)
T ss_dssp GGGTCC--CCCSSCEEECTTSH-HHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHH--HHHH-HHHHHH
T ss_pred hhcccc--cCceeEEEECCchH-HHHHhCCccc-CCcccceEEEECCCCEEEEEEecCCCCCCCHHH--HHHH-HHHHHH
Confidence 344556 78999999999999 9999999863 366789999999999999999877667778889 9999 888874
Q ss_pred ----CccccCCCCCCCCCccCChhhHHHHhhhc
Q psy11208 86 ----FSVCPANWKPDSPTIKPSPAESKEYFNKV 114 (116)
Q Consensus 86 ----~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 114 (116)
.+.||++|++|+++|.+++...++||+++
T Consensus 162 ~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~ 194 (198)
T 1zof_A 162 FEEHGEVCPAGWRKGDKGMKATHQGVAEYLKEN 194 (198)
T ss_dssp HHSSCCCCC------------------------
T ss_pred hhccCCccCCcCcCCCccccCCcccccceeccc
Confidence 49999999999999999999899999864
No 19
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=99.69 E-value=3.7e-17 Score=117.39 Aligned_cols=87 Identities=30% Similarity=0.542 Sum_probs=62.5
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCc-----Cccc
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGL-----FSVC 89 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~-----~~~~ 89 (116)
+++|++++|.+++ ++++||+.....|...|++||||++|+|++.+.......++.++ +++. |++++. ...|
T Consensus 91 ~~~~~~~~d~~~~-~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~--l~~~-l~~l~~~~~~~~~~~ 166 (187)
T 1we0_A 91 SIEYIMIGDPSQT-ISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDAST--LINK-VKAAQYVRENPGEVC 166 (187)
T ss_dssp TCCSEEEECTTCH-HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTH--HHHH-HHHHHHHHTSTTCCC
T ss_pred CCCceEEECCchH-HHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHHhhhhhCCCccc
Confidence 7899999999999 99999998666666789999999999999999887666778899 9999 888876 4899
Q ss_pred cCCCCCCCCCccCChh
Q psy11208 90 PANWKPDSPTIKPSPA 105 (116)
Q Consensus 90 p~~w~~g~~~~~~~~~ 105 (116)
|+||++|.++|+++++
T Consensus 167 p~~w~~~~~~~~~~~~ 182 (187)
T 1we0_A 167 PAKWEEGGETLKPSLD 182 (187)
T ss_dssp ----------------
T ss_pred ccccccCCceeecCHH
Confidence 9999999999999877
No 20
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.65 E-value=3.1e-16 Score=113.63 Aligned_cols=89 Identities=22% Similarity=0.430 Sum_probs=59.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcCccccCCC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFSVCPANW 93 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~~~~p~~w 93 (116)
.+++|++++|.+++ ++++||+... .|...|++||||++|+|++.+.......++.++ +++. |+.++..+.||++|
T Consensus 104 ~~~~~~~~~d~~~~-~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~--l~~~-l~~l~~~~~~p~~w 178 (195)
T 2bmx_A 104 KTLPFPMLSDIKRE-LSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVDE--VLRV-LDALQSDELCASNW 178 (195)
T ss_dssp GGCCSCEEECTTSH-HHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHHH--HHHH-HHHHHC--------
T ss_pred cCCceeEEeCCchH-HHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCCCHHH--HHHH-HHHHhhCCCcCccc
Confidence 48899999999999 9999999865 566789999999999999999887767778899 9999 99998899999999
Q ss_pred CCCCCCccCChhhH
Q psy11208 94 KPDSPTIKPSPAES 107 (116)
Q Consensus 94 ~~g~~~~~~~~~~~ 107 (116)
++|+++|.++++.+
T Consensus 179 ~~~~~~~~~~~~~~ 192 (195)
T 2bmx_A 179 RKGDPTLDAGELLK 192 (195)
T ss_dssp --------------
T ss_pred ccCCcccCCChHHh
Confidence 99999999987643
No 21
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=99.48 E-value=3.4e-14 Score=101.43 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCC----CCcceEEEEECCCCCEEEEEEccCCCCC-CccHHHHHHHHHhhhC
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPA----GIPLRGLFIIDPKGVLRQITVNVPRTGK-TLFGYFTIRSVISSFG 84 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~----G~~~RatFIID~dG~I~~~~~~~~~~~r-~~~e~~iL~~~l~~l~ 84 (116)
+++++||+|+|++++ ++++|||+.+.. +.+.|+|||||++|+|+++++.....++ +++| +|+. |+.|.
T Consensus 87 ~~~~~fp~l~D~~~~-v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~e--il~~-l~~l~ 159 (164)
T 4gqc_A 87 ENRLAFNLLSDYNRE-VIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDE--VVRE-ANKIA 159 (164)
T ss_dssp HTTCCSEEEECTTSH-HHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHH--HHHH-HHHHH
T ss_pred hcCcccceeecCchH-HHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHH--HHHH-HHHHh
Confidence 367899999999999 999999986532 3578999999999999999988765544 7999 9999 88764
No 22
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.48 E-value=3.3e-14 Score=112.42 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=59.0
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF 86 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~ 86 (116)
+++++||+|||++++ ++++|||+.. |.+.|+|||||++|+|++++.. .+..+|++| +|+. |++++..
T Consensus 74 ~~~l~fp~l~D~~~~-v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~~-v~~~~h~~~--~l~~-~~~~~~~ 140 (322)
T 4eo3_A 74 KNDLKVTLLSDPEGI-LHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWRR-VKVEGHVQE--VKEA-LDRLIEE 140 (322)
T ss_dssp HHTCCSEEEECTTCH-HHHHTTCEET--TEECCEEEEECTTSBEEEEEES-CCSTTHHHH--HHHH-HHHHHHH
T ss_pred hhCCceEEEEcCchH-HHHhcCCCCC--CcCccEEEEECCCCEEEEEEeC-CCccccHHH--HHHH-Hhhhchh
Confidence 367899999999999 9999999853 6678999999999999999975 578889999 9999 9988644
No 23
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.45 E-value=1.9e-13 Score=96.39 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=56.6
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCC-----CcceEEEEECCCCCEEEEEEccCCCC-CCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAG-----IPLRGLFIIDPKGVLRQITVNVPRTG-KTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G-----~~~RatFIID~dG~I~~~~~~~~~~~-r~~~e~~iL~~~l~~l~ 84 (116)
++++||+|+|++++ ++++|||.....+ ++.|+|||||++|+|+++++.....+ .++++ +++. |++|.
T Consensus 85 ~~~~~p~l~D~~~~-v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~e--il~~-l~~Ls 157 (157)
T 4g2e_A 85 NKLNFTILSDYNRE-VVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDE--IEKV-VKSLS 157 (157)
T ss_dssp TTCCSEEEECTTSH-HHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHH--HHHH-HHHTC
T ss_pred cCCcEEEEEcCCcH-HHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHH--HHHH-HHHhC
Confidence 57899999999999 9999999754332 46899999999999999998876544 47899 9999 99874
No 24
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=99.34 E-value=2.3e-12 Score=93.45 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=56.2
Q ss_pred cccc--eEEEEeCCChHHHHHhCCCccCC-----C--CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVT--AKVLSSRNRREKEDRIGVLIEPA-----G--IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~--fpLLSD~~~~~vak~yGv~~~~~-----G--~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+++ ||+|+|++++ ++++||+..++. | .+.|+||||| +|+|+++++++.+.+|++.+ +.+. |++|
T Consensus 100 ~~~~~~fp~l~D~~~~-va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~~~--~~~v-l~~l 173 (173)
T 3mng_A 100 HKAEGKVRLLADPTGA-FGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTCSL--APNI-ISQL 173 (173)
T ss_dssp TTCTTTCEEEECTTCH-HHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSSTTS--HHHH-HHHC
T ss_pred hCCCCceEEEECCChH-HHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcchHH--HHHH-HHhC
Confidence 3455 9999999999 999999986532 2 4789999999 99999999999889999999 9888 8765
No 25
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=99.24 E-value=1.6e-11 Score=93.47 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred ccc-ceEEEEeC-CChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEccCCC-CCCccHHHHHHHHHhhhC
Q psy11208 14 GTV-TAKVLSSR-NRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNVPRT-GKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l-~fpLLSD~-~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~~~~-~r~~~e~~iL~~~l~~l~ 84 (116)
+++ +||+|||. +++ ++++||+..+. .|++.|+|||||++|+|+|+++.+... .+++++ +|+. |+.++
T Consensus 103 ~gl~~fplLsD~~~~~-vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~e--vl~~-L~~l~ 175 (224)
T 3keb_A 103 HGLPNIALLSTLRGRD-FHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDA--IEKL-LQEGE 175 (224)
T ss_dssp HCCTTCEEEESTTCTT-HHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHH--HHHH-HHHHH
T ss_pred cCCCCceEEEcCCchH-HHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHH--HHHH-HHHhh
Confidence 466 69999999 699 99999998754 577899999999999999999876543 468999 9999 88775
No 26
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=99.19 E-value=2.3e-11 Score=89.50 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=51.8
Q ss_pred ceEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccCCC---------CCCccHHHHHHHHHhh
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVPRT---------GKTLFGYFTIRSVISS 82 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~~~---------~r~~~e~~iL~~~l~~ 82 (116)
+|+||||++++ ++++||+..+. .|+ ..|+||||| +|+|+++++.+... .+|+++ +|+. |++
T Consensus 105 ~f~lLsD~~~~-~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~~~~~~~~~~~~--vL~~-L~~ 179 (182)
T 1xiy_A 105 KIKYISDGNSS-FTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNIQTDPYDISTVNN--VKEF-LKN 179 (182)
T ss_dssp SSEEEECTTSH-HHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTCSSCCCSTTSHHH--HHHH-HHC
T ss_pred CceEEEeCchH-HHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeCCcccccccCcccCCCHHH--HHHH-HHh
Confidence 79999999999 99999998543 242 689999999 99999999876443 378999 9999 876
Q ss_pred hC
Q psy11208 83 FG 84 (116)
Q Consensus 83 l~ 84 (116)
.+
T Consensus 180 ~~ 181 (182)
T 1xiy_A 180 NQ 181 (182)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 27
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=99.12 E-value=7.8e-11 Score=86.77 Aligned_cols=64 Identities=14% Similarity=0.315 Sum_probs=48.6
Q ss_pred ccc--eEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVT--AKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~--fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++ ||+|||++++ ++++||+..+. .|+ +.|+|||| ++|+|+++++++. .+++... +.+. |++|+
T Consensus 105 ~l~~~f~lLsD~~~~-va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~-~~~~~~~--a~~v-L~~Lk 175 (176)
T 4f82_A 105 HTAGKVRMMADGSAA-FTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAP-GKFEVSD--AASV-LATLT 175 (176)
T ss_dssp TCTTTSEEEECTTCH-HHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCT-TCCSSSS--HHHH-HHTCC
T ss_pred CCCCCceEEEcCchH-HHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCC-CCcchhh--HHHH-HHHhh
Confidence 455 9999999999 99999998654 343 57999999 9999999999763 3444555 5555 55543
No 28
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=99.11 E-value=1.5e-10 Score=81.42 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=55.5
Q ss_pred ccc-ceEEEEeC-CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC-CCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSSR-NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP-RTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD~-~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~-~~~r~~~e~~iL~~~l~~l 83 (116)
+++ +||+++|. +++ ++++||+.....|...|++||||++|+|++++.... ....+.++ +++. |+.+
T Consensus 98 ~~~~~~~~l~D~~~~~-~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~--il~~-l~~l 166 (166)
T 3p7x_A 98 AGLDNVITLSDHRDLS-FGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDA--ALAA-YKNI 166 (166)
T ss_dssp HTCSSCEEEECTTTCH-HHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHH--HHHH-HHTC
T ss_pred cCCCceEEccCCchhH-HHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHH--HHHH-HhcC
Confidence 567 89999999 888 999999997766777899999999999999987654 44557888 9888 7653
No 29
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=99.04 E-value=6.7e-10 Score=77.81 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=54.5
Q ss_pred ccc-ceEEEEe-CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC-CCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSS-RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP-RTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD-~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~-~~~r~~~e~~iL~~~l~~l 83 (116)
+++ +||+++| .++. ++++||+.....|+..|++||||++|+|++.+.... ....++++ +++. |++|
T Consensus 95 ~~~~~~~~l~D~~~~~-~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~--~l~~-l~~l 163 (163)
T 1psq_A 95 EGLDNAIMLSDYFDHS-FGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEA--AIAA-AKAL 163 (163)
T ss_dssp HTCTTSEEEECTTTCH-HHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHH--HHHH-HHHC
T ss_pred cCCCCcEEecCCchhH-HHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHH--HHHH-HHhC
Confidence 467 8999999 8899 999999986555666799999999999999998653 34456789 9988 8764
No 30
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=99.01 E-value=1.7e-10 Score=84.31 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=45.0
Q ss_pred ceEEEEeCCChHHHHHhCCCccCC----C-CcceEEEEECCCCCEEEEEEccCCCC---CCccHHHHHHH
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEPA----G-IPLRGLFIIDPKGVLRQITVNVPRTG---KTLFGYFTIRS 78 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~~----G-~~~RatFIID~dG~I~~~~~~~~~~~---r~~~e~~iL~~ 78 (116)
+|+||||++++ ++++||+..+.. | ...|+||||| +|+|+++++.+.+.+ .++++ +|+.
T Consensus 103 ~f~lLSD~~~~-~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~~--vL~~ 168 (171)
T 2xhf_A 103 KIRMLADMHGE-FTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLLSIQ--RQKE 168 (171)
T ss_dssp CSEEEECTTSH-HHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHHH--HC--
T ss_pred CeEEEEeCCch-HHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHHH--HHHH
Confidence 89999999999 999999986541 2 3789999999 999999998765431 24566 6555
No 31
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=98.99 E-value=1e-09 Score=75.69 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=57.3
Q ss_pred cccceEEEEeC--CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSR--NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~--~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++|++++|. ++. +++.||+.....+++.|++||||++|+|++.+.+........++ +++. |++++
T Consensus 91 ~~~~~~~~~d~~~~~~-~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~--l~~~-l~~l~ 159 (160)
T 1xvw_A 91 SGFTFPLLSDFWPHGA-VSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRL--WTDA-LAALT 159 (160)
T ss_dssp HTCCSCEEECTTTTTH-HHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHH--HHHH-HHHTC
T ss_pred cCCCceEEecCCcChH-HHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHH--HHHH-HHHhc
Confidence 56789999996 888 99999998665577778999999999999999877666667889 9999 88876
No 32
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.99 E-value=8.2e-10 Score=78.39 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=54.8
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCC----CCCCccHHHHHHHHHhhhCcC---
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPR----TGKTLFGYFTIRSVISSFGLF--- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~----~~r~~~e~~iL~~~l~~l~~~--- 86 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|++....... ...+.++ +.+. |+.+...
T Consensus 94 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~--l~~~-i~~ll~~~~~ 163 (188)
T 2cvb_A 94 HGIFFPYLLDETQE-VAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHD--LEAA-IEALLRGEEP 163 (188)
T ss_dssp HTCCSCEEECSSSH-HHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCH--HHHH-HHHHHTTCCC
T ss_pred hCCCceEEECCcch-HHHHcCCC------CCCeEEEECCCCcEEEEEecCCccccccccCHHH--HHHH-HHHHHcCCCC
Confidence 56789999999999 99999987 56999999999999987321110 1113456 6666 6554222
Q ss_pred -------ccccCCCCCCCC
Q psy11208 87 -------SVCPANWKPDSP 98 (116)
Q Consensus 87 -------~~~p~~w~~g~~ 98 (116)
..||++|+||++
T Consensus 164 ~~~~~~~~gc~~~~~~~~~ 182 (188)
T 2cvb_A 164 PLKEAPAIGCTIKWRPGNE 182 (188)
T ss_dssp CSSCCCCCSEECCCCTTCC
T ss_pred CcccCCCCceEEEecCCCC
Confidence 679999998864
No 33
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.98 E-value=8.4e-10 Score=78.49 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=55.8
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCC----CC-CCccHHHHHHHHHhhhCcC--
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPR----TG-KTLFGYFTIRSVISSFGLF-- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~----~~-r~~~e~~iL~~~l~~l~~~-- 86 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|++....... .+ .+.++ +.+. |+.+...
T Consensus 108 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~--l~~~-i~~ll~~~~ 177 (196)
T 2ywi_A 108 LGYPFPYLYDETQE-VAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGES--IRAA-LDALLEGRP 177 (196)
T ss_dssp HTCCSCEEECSSCH-HHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHH--HHHH-HHHHHHTCC
T ss_pred cCCCceEEECCchH-HHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCccCHHH--HHHH-HHHHHcCCC
Confidence 46789999999999 99999987 57999999999999998653321 12 24556 6666 6654221
Q ss_pred --------ccccCCCCCCC
Q psy11208 87 --------SVCPANWKPDS 97 (116)
Q Consensus 87 --------~~~p~~w~~g~ 97 (116)
..||+.|++|.
T Consensus 178 ~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 178 VPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp CCSCCCCCEEEECCCCCCC
T ss_pred CCCCCCCCCceeeeeccCC
Confidence 68999999884
No 34
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=98.98 E-value=5.4e-10 Score=79.97 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=53.9
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCC--CC----cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPA--GI----PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~--G~----~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++||+++|.+++ ++++||+..... |. ..|++||||++|+|++++ .......++++ +++. |++++
T Consensus 106 ~~~~f~~l~D~~~~-~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~--il~~-l~~l~ 177 (179)
T 3ixr_A 106 QGFTFPLVSDSDAI-LCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGHAEE--VLNK-LKAHA 177 (179)
T ss_dssp HTCCSCEEECTTCH-HHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTHHHH--HHHH-HHHHH
T ss_pred cCCceEEEECCchH-HHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCCHHH--HHHH-HHHHh
Confidence 57899999999999 999999985322 21 369999999999999998 44566678899 9999 88875
No 35
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=98.97 E-value=8.4e-10 Score=76.53 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=54.1
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCC--CC----cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPA--GI----PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~--G~----~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++||+++|.+++ ++++||+..... |. ..|++||||++|+|++++ .......+.++ +++. |++++
T Consensus 90 ~~~~~~~~~d~~~~-~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~--il~~-l~~l~ 161 (163)
T 3gkn_A 90 QGFAFPLVSDGDEA-LCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADA--VLAA-LKAHA 161 (163)
T ss_dssp HCCSSCEEECTTCH-HHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHH--HHHH-HHHHC
T ss_pred hCCCceEEECCcHH-HHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHH--HHHH-HHHHh
Confidence 57899999999999 999999985321 11 179999999999999998 44556678899 9999 88876
No 36
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=98.96 E-value=1.8e-09 Score=79.15 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=52.8
Q ss_pred ccc-ceEEEEeC-CChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEcc-CCCCCCccHHHHHHHHH
Q psy11208 14 GTV-TAKVLSSR-NRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNV-PRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 14 ~~l-~fpLLSD~-~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~-~~~~r~~~e~~iL~~~l 80 (116)
+++ +|++++|. +++ ++++||+.... .|...|++||||++|+|+++++.. ....+++++ +|++ |
T Consensus 131 ~~~~~f~~l~D~~~~~-~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~--~l~~-L 199 (200)
T 3zrd_A 131 EGLSNVITLSTLRGAD-FKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDA--ALAA-L 199 (200)
T ss_dssp TTCTTEEEEETTSCTH-HHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHH--HHHH-H
T ss_pred cCCCCceEEecCchHH-HHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHH--HHHh-h
Confidence 578 99999999 899 99999998644 466689999999999999999865 355667888 8877 5
No 37
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=98.93 E-value=1.8e-09 Score=79.54 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=54.5
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCC-----CCCCccHHHHHHHHHhhhCcC--
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPR-----TGKTLFGYFTIRSVISSFGLF-- 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~-----~~r~~~e~~iL~~~l~~l~~~-- 86 (116)
++++||+++|.++. +++.||+. ..|++||||++|+|++....... ......+ +.+. |+++...
T Consensus 121 ~~~~~~~l~D~~~~-~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~--l~~~-i~~ll~~~~ 190 (218)
T 3u5r_E 121 YGYGFPYLKDASQS-VAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGAD--LRAA-VDAVLKGKD 190 (218)
T ss_dssp HTCCSCEEECTTCH-HHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHH--HHHH-HHHHHTTCC
T ss_pred hCCCccEEECCccH-HHHHcCCC------CCCeEEEECCCCcEEEeccccccccccccccCHHH--HHHH-HHHHHcCCC
Confidence 57899999999999 99999997 56999999999999987643322 1112344 5555 6665322
Q ss_pred --------ccccCCCCCCCC
Q psy11208 87 --------SVCPANWKPDSP 98 (116)
Q Consensus 87 --------~~~p~~w~~g~~ 98 (116)
..||.+|.+|++
T Consensus 191 ~~~~~~~~~GC~i~w~~~~~ 210 (218)
T 3u5r_E 191 VGTTQVPSIGCNIKWTAGNE 210 (218)
T ss_dssp CCSCCCCCEEEECCCCCC--
T ss_pred CCcCCcCCCCeeEEeCCCCC
Confidence 579999999865
No 38
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=98.93 E-value=1.7e-09 Score=80.38 Aligned_cols=65 Identities=12% Similarity=0.263 Sum_probs=53.8
Q ss_pred cccc-eEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccCCCC-----CCccHHHHHHHHHhh
Q psy11208 14 GTVT-AKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVPRTG-----KTLFGYFTIRSVISS 82 (116)
Q Consensus 14 ~~l~-fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~~~~-----r~~~e~~iL~~~l~~ 82 (116)
++++ ||+|+|.+++ ++++||+.... .|+ +.|+|||| ++|+|++++......+ +++++ +|+. |++
T Consensus 90 ~~~~~~~~l~D~~~~-~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~--il~~-l~~ 164 (241)
T 1nm3_A 90 EKSENISFIPDGNGE-FTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADT--MLKY-LAP 164 (241)
T ss_dssp TTCTTSEEEECTTSH-HHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHH--HHHH-HCT
T ss_pred cCCCceEEEECCCcH-HHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCHHH--HHHH-hhh
Confidence 4565 9999999999 99999998543 244 67999999 9999999999876665 58999 9999 876
Q ss_pred h
Q psy11208 83 F 83 (116)
Q Consensus 83 l 83 (116)
.
T Consensus 165 ~ 165 (241)
T 1nm3_A 165 Q 165 (241)
T ss_dssp T
T ss_pred h
Confidence 4
No 39
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=98.92 E-value=2.5e-09 Score=75.14 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=50.2
Q ss_pred ccc-ceEEEEeC-CChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEcc-CCCCCCccHHHHHHH
Q psy11208 14 GTV-TAKVLSSR-NRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNV-PRTGKTLFGYFTIRS 78 (116)
Q Consensus 14 ~~l-~fpLLSD~-~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~-~~~~r~~~e~~iL~~ 78 (116)
+++ +||+++|. +++ ++++||+.... .|...|++||||++|+|++.+... .....++++ +|+.
T Consensus 96 ~~~~~~~~l~D~~~~~-~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~--~l~~ 163 (165)
T 1q98_A 96 EGIENAKTVSTFRNHA-LHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEA--ALAV 163 (165)
T ss_dssp TTCTTEEEEECTTCTH-HHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHH--HHHT
T ss_pred cCCCceEEeeccccch-HHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHH--HHHh
Confidence 577 79999998 788 99999997532 355679999999999999999853 445667888 7776
No 40
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.92 E-value=1.7e-09 Score=75.49 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=56.5
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF 86 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~ 86 (116)
.+++|++++|.+++ ++++||+.. .....|++||||++|+|++.+........++++ +++. |++++..
T Consensus 84 ~~~~~~~~~d~~~~-~~~~~~v~~--~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~--il~~-l~~l~~~ 150 (161)
T 3drn_A 84 YKLPFILVSDPDKK-IRELYGAKG--FILPARITFVIDKKGIIRHIYNSQMNPANHVNE--ALKA-LKQIKEE 150 (161)
T ss_dssp TTCCSEEEECTTSH-HHHHTTCCC--SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHH--HHHH-HHHHHHH
T ss_pred hCCCceEEECCcHH-HHHHcCCCC--cCcccceEEEECCCCEEEEEEecCCCCCcCHHH--HHHH-HHHhhhh
Confidence 57789999999999 999999973 134579999999999999999876666778899 9999 8888643
No 41
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=98.89 E-value=1.7e-09 Score=78.90 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred cccc--eEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccCCCC---CCccHHHHHHH
Q psy11208 14 GTVT--AKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVPRTG---KTLFGYFTIRS 78 (116)
Q Consensus 14 ~~l~--fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~~~~---r~~~e~~iL~~ 78 (116)
.+++ ||+|+|++++ ++++||+.... .|+ +.|+||||| +|+|+++++++.+.. .++++ +|+.
T Consensus 113 ~~~~~~fp~l~D~~~~-va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~~~~--vL~~ 183 (184)
T 3uma_A 113 SGGMGKIHFLSDWNAA-FTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASGAAA--MLEL 183 (184)
T ss_dssp HTCTTTSEEEECTTCH-HHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTSHHH--HHHH
T ss_pred hCCCCceEEEEcCchH-HHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCCHHH--HHhh
Confidence 4566 9999999999 99999998542 232 579999996 999999999875433 34555 5543
No 42
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=98.89 E-value=5.3e-09 Score=73.54 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=53.2
Q ss_pred ccc-ceEEEEe-CCChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEccC-CCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSS-RNRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVNVP-RTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD-~~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~~~-~~~r~~~e~~iL~~~l~~l 83 (116)
+++ +|++++| .+++ + ++||+.... .|...|++||||++|+|++.+.... ....+.++ +++. |++|
T Consensus 100 ~~~~~~~~l~D~~~~~-~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~--ll~~-l~~l 170 (171)
T 2yzh_A 100 FNIQNVTVASDFRYRD-M-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDE--VVNK-VKEL 170 (171)
T ss_dssp TTCCSSEEEECTTTCG-G-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHH--HHHH-HHHC
T ss_pred cCCCCeEEeecCccCc-H-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHH--HHHH-HHhh
Confidence 467 8999999 8899 9 999998643 3556799999999999999998643 34567899 9998 8765
No 43
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=98.88 E-value=9.5e-09 Score=71.55 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=54.5
Q ss_pred ccc-ceEEEEe-CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC-CCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSS-RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP-RTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD-~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~-~~~r~~~e~~iL~~~l~~l 83 (116)
.++ +||+++| .+++ ++++||+.....|...|++||||++|+|++.+.... ....+.++ +++. |+.|
T Consensus 97 ~~~~~~~~~~d~~~~~-~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~--l~~~-l~~l 165 (167)
T 2jsy_A 97 NGIDKVETLSDHRDMS-FGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEK--PIEA-AKAL 165 (167)
T ss_dssp SSCTTEEEEEGGGTCH-HHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHH--HHHH-HHHH
T ss_pred cCCCCceEeeCCchhH-HHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHH--HHHH-HHHh
Confidence 467 8999999 8889 999999986555666799999999999999998653 33446788 9988 8765
No 44
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=98.84 E-value=5.2e-09 Score=74.77 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=43.4
Q ss_pred cceEEEEeCCChHHHHHhCCCccCC----CC-cceEEEEECCCCCEEEEEEccCCCCCCccH
Q psy11208 16 VTAKVLSSRNRREKEDRIGVLIEPA----GI-PLRGLFIIDPKGVLRQITVNVPRTGKTLFG 72 (116)
Q Consensus 16 l~fpLLSD~~~~~vak~yGv~~~~~----G~-~~RatFIID~dG~I~~~~~~~~~~~r~~~e 72 (116)
++||+|+|.+++ ++++||+..... |+ ..|.||+|| +|+|+++++...+.++...+
T Consensus 104 ~~fp~l~D~~~~-~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~~~~~~ 163 (171)
T 2pwj_A 104 DAIEFYGDFDGS-FHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSDVKVSG 163 (171)
T ss_dssp TTSEEEECTTCH-HHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTCCSSSS
T ss_pred CceEEEECCccH-HHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCCCcccC
Confidence 589999999999 999999985431 32 368899999 99999999987665444344
No 45
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=98.81 E-value=8e-09 Score=72.58 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=45.1
Q ss_pred ceEEEEeCCChHHHHHhCCCccC--CCC---cceEEEEECCCCCEEEEEEccCCCCC---CccHHHHHHH
Q psy11208 17 TAKVLSSRNRREKEDRIGVLIEP--AGI---PLRGLFIIDPKGVLRQITVNVPRTGK---TLFGYFTIRS 78 (116)
Q Consensus 17 ~fpLLSD~~~~~vak~yGv~~~~--~G~---~~RatFIID~dG~I~~~~~~~~~~~r---~~~e~~iL~~ 78 (116)
+||+|+|.+++ ++++||+.... .|. ..|+||||| +|+|+++++.. +.++ ++++ +|+.
T Consensus 97 ~~~~l~D~~~~-~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~~~~--vl~~ 161 (162)
T 1tp9_A 97 HVKFLADGSAT-YTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSSAED--ILKD 161 (162)
T ss_dssp SEEEEECTTSH-HHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCSHHH--HHTT
T ss_pred CeEEEECCCch-HHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCCHHH--HHhh
Confidence 89999999999 99999998432 242 479999999 99999999876 4444 5666 6543
No 46
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=98.78 E-value=2.7e-08 Score=70.56 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=51.2
Q ss_pred ccc-ceEEEEeCCChHHHHHhCCCccC---CCCcceEEEEECCCCCEEEEEEc-cCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSSRNRREKEDRIGVLIEP---AGIPLRGLFIIDPKGVLRQITVN-VPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD~~~~~vak~yGv~~~~---~G~~~RatFIID~dG~I~~~~~~-~~~~~r~~~e~~iL~~~l~~l 83 (116)
.++ +|++++|.++. ++++||+.... .|...|++||||++|+|++.+.. ......++++ +|+. +++-
T Consensus 96 ~~~~~~~~l~D~~~~-~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~--~l~~-l~~~ 166 (175)
T 1xvq_A 96 EGTENVMPASAFRDS-FGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEA--ALAA-LGAT 166 (175)
T ss_dssp ----CEEEEECTTSS-HHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHH--HHHH-HHHT
T ss_pred cCCCCceEeeCCHHH-HHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHH--HHHH-HHhh
Confidence 466 89999999999 99999997542 35667999999999999999974 3345557888 8888 6653
No 47
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=98.62 E-value=7.2e-08 Score=68.75 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=42.8
Q ss_pred cccc--eEEEEeCCChHHHHHhCCCccCC---C--CcceEEEEECCCCCEEEEEEccCCCCCC
Q psy11208 14 GTVT--AKVLSSRNRREKEDRIGVLIEPA---G--IPLRGLFIIDPKGVLRQITVNVPRTGKT 69 (116)
Q Consensus 14 ~~l~--fpLLSD~~~~~vak~yGv~~~~~---G--~~~RatFIID~dG~I~~~~~~~~~~~r~ 69 (116)
.+++ ||+|+|.+++ ++++||+..... | ...|+|||| ++|+|+++++.+....+.
T Consensus 88 ~~~~~~fp~l~D~~~~-~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~ 148 (167)
T 2wfc_A 88 HGADDKVQMLADPGGA-FTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLT 148 (167)
T ss_dssp TTCTTTSEEEECTTSH-HHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSS
T ss_pred cCCCcceEEEECCCCc-HHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcce
Confidence 3566 9999999999 999999975311 2 246999999 999999999887655443
No 48
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=98.57 E-value=4.2e-08 Score=68.02 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=39.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccC-CCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEP-AGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~-~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++||+++|.+++ ++++||+.... .| ..|++||| ++|+|++.+...
T Consensus 89 ~~~~~~~l~D~~~~-~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 89 QNLPYHLLSDPKRE-FIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp HTCSSEEEECTTCH-HHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEESC
T ss_pred hCCCceEEECCccH-HHHHhCCcccccCC-ccceEEEE-cCCEEEEEEccC
Confidence 46789999999999 99999997543 34 47899999 999999998754
No 49
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.41 E-value=1.2e-06 Score=60.23 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=49.6
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+.+++|++++|.++. +++.||+. ..|++||||++|+|++.+.+... .+..+ +++. ++..+
T Consensus 92 ~~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~~--~~~~~--~~~~-~~~~~ 151 (158)
T 3hdc_A 92 RAPVSFNFLSDATGQ-VQQRYGAN------RLPDTFIVDRKGIIRQRVTGGIE--WDAPK--VVSY-LKSLE 151 (158)
T ss_dssp GCCCSCEEEECTTSH-HHHHTTCC------SSSEEEEECTTSBEEEEEESCCC--TTSHH--HHHH-HHTTC
T ss_pred HcCCCceEEECchHH-HHHHhCCC------CcceEEEEcCCCCEEEEEeCCCc--cchHH--HHHH-HHhhc
Confidence 357899999999999 99999997 57999999999999999876543 34577 8777 66655
No 50
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.34 E-value=3.6e-07 Score=66.16 Aligned_cols=77 Identities=10% Similarity=0.084 Sum_probs=44.6
Q ss_pred cccceEEEEe---CCChHHHHHhCCCccC-----CC-----CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 14 GTVTAKVLSS---RNRREKEDRIGVLIEP-----AG-----IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 14 ~~l~fpLLSD---~~~~~vak~yGv~~~~-----~G-----~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
.+++|+.|++ ..+. ++++||+.... .| ...|++||||++|+|++.+....+.....++ +.+. |
T Consensus 103 ~~~~~~~l~~~~d~~~~-~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~--i~~~-l 178 (200)
T 2b7k_A 103 FHPSILGLTGTFDEVKN-ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDK--IVEH-V 178 (200)
T ss_dssp SCTTCEEEECCHHHHHH-HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHH--HHHH-H
T ss_pred cCCCceEEeCCHHHHHH-HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHH--HHHH-H
Confidence 3567888874 3467 99999997211 01 1347999999999999987654444434445 5556 7
Q ss_pred hhhCcC---ccccCCCC
Q psy11208 81 SSFGLF---SVCPANWK 94 (116)
Q Consensus 81 ~~l~~~---~~~p~~w~ 94 (116)
+.+... +.|+.+|-
T Consensus 179 ~~l~~~~~~~~~~~~~~ 195 (200)
T 2b7k_A 179 KSYVPAEQRAKQKEAWY 195 (200)
T ss_dssp HHCCCC-----------
T ss_pred HHhhhhhhcchhHHHHH
Confidence 777666 89999994
No 51
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.34 E-value=1.4e-06 Score=58.93 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=47.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|++.+.+.... +..+ +++. |+.+.
T Consensus 84 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~--~~~~--l~~~-l~~l~ 142 (154)
T 3kcm_A 84 TGFTLPVLLDADKR-VGKLYGTT------GVPETFVIDRHGVILKKVVGAMEW--DHPE--VIAF-LNNEL 142 (154)
T ss_dssp HCCCCCEEECTTCH-HHHHHTCC------SBCEEEEECTTSBEEEEEESCCCT--TSHH--HHHH-HHTC-
T ss_pred cCCCeeEEecCchH-HHHHhCCC------CCCeEEEECCCCcEEEEEcCCCcc--ccHH--HHHH-HHHHH
Confidence 46789999999999 99999997 578999999999999988765332 3466 7777 77765
No 52
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.30 E-value=2.4e-06 Score=55.61 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred cc-ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TV-TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l-~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++ +|++++|.++. +++.||+. ..|++||||++|+|++.+.+. .+.++ +.+. |+.+
T Consensus 82 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~--l~~~-l~~l 137 (138)
T 4evm_A 82 DYKNLPVLVDPSGK-LLETYGVR------SYPTQAFIDKEGKLVKTHPGF----MEKDA--ILQT-LKEL 137 (138)
T ss_dssp CCTTCCEEECTTCH-HHHHTTCC------SSSEEEEECTTCCEEEEEESC----CCHHH--HHHH-HHHC
T ss_pred CCCCeeEEECcchH-HHHHcCcc------cCCeEEEECCCCcEEEeecCC----CcHHH--HHHH-HHhh
Confidence 44 89999999999 99999987 569999999999999987643 23455 6666 6665
No 53
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.28 E-value=2.7e-06 Score=57.37 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=47.4
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.+++|++++|.++. +++.||+. ..|++||||++|+|++.+.+... .+.++ +.+. |+++.
T Consensus 83 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~--~~~~~--l~~~-i~~~~ 141 (152)
T 3gl3_A 83 VPAEFTVAFDPKGQ-TPRLYGVK------GMPTSFLIDRNGKVLLQHVGFRP--ADKEA--LEQQ-ILAAL 141 (152)
T ss_dssp SCCCSEEEECTTCH-HHHHTTCC------SSSEEEEECTTSBEEEEEESCCT--TTHHH--HHHH-HHHHT
T ss_pred cCCCCceeECCcch-hHHHcCCC------CCCeEEEECCCCCEEEEEccCCC--cCHHH--HHHH-HHHHH
Confidence 56789999999999 99999997 57999999999999998875432 23456 6666 76655
No 54
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.24 E-value=2.7e-06 Score=57.91 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=43.9
Q ss_pred cccceEEEEeCCC-----hHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSRNR-----REKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~~~-----~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++++||++.|.++ . +++.||+. ..|++||||++|+|++.+.+.. +.++ +.+. |+.+
T Consensus 90 ~~~~~~~~~d~~~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-i~~l 150 (158)
T 3eyt_A 90 YRIKFPVGVDQPGDGAMPR-TMAAYQMR------GTPSLLLIDKAGDLRAHHFGDV----SELL--LGAE-IATL 150 (158)
T ss_dssp TTCCSCEEEECCCSSSSCH-HHHHTTCC------SSSEEEEECTTSEEEEEEESCC----CHHH--HHHH-HHHH
T ss_pred cCCCceEEEcCccchhhHH-HHHHcCCC------CCCEEEEECCCCCEEEEEeCCC----CHHH--HHHH-HHHH
Confidence 5778999999998 7 99999987 5799999999999999887543 2344 5555 5544
No 55
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.20 E-value=3.4e-06 Score=57.08 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=45.9
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|++.+.+.. +.++ +.+. |+.+.
T Consensus 81 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~----~~~~--l~~~-l~~ll 137 (151)
T 2f9s_A 81 YGVNFPVVLDTDRQ-VLDAYDVS------PLPTTFLINPEGKVVKVVTGTM----TESM--IHDY-MNLIK 137 (151)
T ss_dssp HTCCSCEEEETTSH-HHHHTTCC------SSCEEEEECTTSEEEEEEESCC----CHHH--HHHH-HHHHS
T ss_pred cCCCceEEECCchH-HHHhcCCC------CCCeEEEECCCCcEEEEEeCCC----CHHH--HHHH-HHHHH
Confidence 46789999999999 99999987 5699999999999999876432 3455 6666 77665
No 56
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.19 E-value=5e-06 Score=55.28 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=44.1
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++++||++.|.++. +++.||+. ..|++||||++|+|++...... +.++ +.+. |+.+
T Consensus 88 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~~~ 143 (148)
T 2b5x_A 88 HDITQPIFVDSDHA-LTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKM--LEKR-VNRV 143 (148)
T ss_dssp TTCCSCEEECSSCH-HHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHH--HHHH-HHHH
T ss_pred cCCCcceEECCchh-HHHHhCCC------CCCEEEEECCCCcEEEEecCCC----CHHH--HHHH-HHHH
Confidence 56789999999999 99999987 5699999999999999876542 3445 5555 5543
No 57
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=2e-06 Score=58.50 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=36.3
Q ss_pred cccceEEEEeC---CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 14 GTVTAKVLSSR---NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 14 ~~l~fpLLSD~---~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
++++|++++|. ++. +++.||+. ..|++||||++|+|++.+.
T Consensus 91 ~~~~~~~~~d~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~ 134 (150)
T 3fw2_A 91 DTLDWEQVCDFGGLNSE-VAKQYSIY------KIPANILLSSDGKILAKNL 134 (150)
T ss_dssp TTCCSEEECCSCGGGCH-HHHHTTCC------SSSEEEEECTTSBEEEESC
T ss_pred hCCCceEEEcCcccchH-HHHHcCCC------ccCeEEEECCCCEEEEccC
Confidence 57899999998 568 99999987 5799999999999998763
No 58
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.14 E-value=7e-06 Score=53.94 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=44.3
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|+ .+.. .....+.++ +.+. |+.+
T Consensus 77 ~~~~~~~~~d~~~~-~~~~~~i~------~~P~~~lid~~G~i~-~~~~-~~g~~~~~~--l~~~-l~~l 134 (136)
T 1lu4_A 77 YNLNFTNLNDADGV-IWARYNVP------WQPAFVFYRADGTST-FVNN-PTAAMSQDE--LSGR-VAAL 134 (136)
T ss_dssp HTCCSEEEECTTSH-HHHHTTCC------SSSEEEEECTTSCEE-EECC-SSSCCCHHH--HHHH-HHHC
T ss_pred cCCCceEEECCchh-HHHhcCCC------CCCEEEEECCCCcEE-EEEc-CCCccCHHH--HHHH-HHHH
Confidence 57799999999999 99999987 569999999999999 5542 112234566 6666 6654
No 59
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.14 E-value=2.2e-06 Score=60.62 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=37.7
Q ss_pred cccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 14 GTVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 14 ~~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
.+++|+ +++|.++. +++.||+. ..|++||||++|+|++.+....
T Consensus 109 ~~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~ 153 (176)
T 3kh7_A 109 LHNPYLLSISDADGT-LGLDLGVY------GAPETYLIDKQGIIRHKIVGVV 153 (176)
T ss_dssp TTCCCSEEEEETTCH-HHHHHTCC------SSCEEEEECTTCBEEEEEESCC
T ss_pred cCCCCceEEECCcch-HHHHcCCC------CCCeEEEECCCCeEEEEEcCCC
Confidence 466777 58999999 99999997 5699999999999999887654
No 60
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.12 E-value=4.7e-06 Score=57.51 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=47.0
Q ss_pred cccce---EEEEeCCChHHHHHhCCC-----cc-----CCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHH
Q psy11208 14 GTVTA---KVLSSRNRREKEDRIGVL-----IE-----PAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVI 80 (116)
Q Consensus 14 ~~l~f---pLLSD~~~~~vak~yGv~-----~~-----~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l 80 (116)
++++| ++++|.+++ ++++|++. .. ......+++||||++|+|++.+..... .+.++ +++. |
T Consensus 94 ~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~--~~~~~--l~~~-l 167 (174)
T 1xzo_A 94 YPLSFDNWDFLTGYSQS-EIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN--TPYDD--IISD-V 167 (174)
T ss_dssp SCCCGGGEEEEBCSCHH-HHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS--CCHHH--HHHH-H
T ss_pred cCCCCcceEEEeCCCHH-HHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC--CCHHH--HHHH-H
Confidence 46677 999999988 88888741 10 012356899999999999998876432 35677 8888 7
Q ss_pred hhhC
Q psy11208 81 SSFG 84 (116)
Q Consensus 81 ~~l~ 84 (116)
+.+.
T Consensus 168 ~~ll 171 (174)
T 1xzo_A 168 KSAS 171 (174)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
No 61
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.10 E-value=6.2e-06 Score=57.89 Aligned_cols=63 Identities=6% Similarity=0.094 Sum_probs=47.6
Q ss_pred ccc-ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTV-TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l-~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++ .|++++|.++. +++.||+.... ...|++||||++|+|++.+.+.. ..+.++ +++. |+.+.
T Consensus 116 ~~~~~~~~~~d~~~~-~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~--~~~~~~--l~~~-l~~ll 179 (186)
T 1jfu_A 116 ANLTRLGYFNDQKAK-VFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPA--EWASED--ALKL-IRAAT 179 (186)
T ss_dssp TTCCTTCCEECTTCH-HHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCC--CTTSHH--HHHH-HHHHH
T ss_pred cCCCCCceEECCcch-HHHHhcccccc--CCCCEEEEECCCCCEEEEEecCC--ccCHHH--HHHH-HHHHh
Confidence 455 58999999999 99999986322 24699999999999999887543 234567 7777 76654
No 62
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.07 E-value=8e-06 Score=54.56 Aligned_cols=55 Identities=5% Similarity=-0.046 Sum_probs=41.4
Q ss_pred ccccceEEEEeCCChHHHH--HhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 13 EGTVTAKVLSSRNRREKED--RIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak--~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++++|+++.|.++. ++. .||+. ..|++||||++|+|++. ..+.++ +.+. |+.++
T Consensus 84 ~~~~~~~~~~d~~~~-~~~~~~~~v~------~~P~~~lid~~G~i~~~-------~~~~~~--l~~~-l~~~~ 140 (142)
T 3ewl_A 84 YMPQGWIVGWNKAGD-IRTRQLYDIR------ATPTIYLLDGRKRVILK-------DTSMEQ--LIDY-LATQA 140 (142)
T ss_dssp TSCTTCEEEECTTCH-HHHTTCSCCC------SSSEEEEECTTCBEEEC-------SCCHHH--HHHH-HHC--
T ss_pred HcCCCcceeeCCccc-hhhHHHcCCC------CCCeEEEECCCCCEEec-------CCCHHH--HHHH-HHHHc
Confidence 357899999999999 877 89987 57999999999999872 123455 5555 66543
No 63
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.05 E-value=8.9e-06 Score=54.85 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=44.5
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++++|+++.|.+.. +++.||+. ..|++||||++|+|++.+.+. .+.++ +++. |+.+
T Consensus 84 ~~~~~~~~~d~~~~-~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~--l~~~-l~~l 139 (153)
T 2l5o_A 84 YGLPFTVMYDADKA-VGQAFGTQ------VYPTSVLIGKKGEILKTYVGE----PDFGK--LYQE-IDTA 139 (153)
T ss_dssp TTCCSEEEECSSCH-HHHHHTCC------SSSEEEEECSSSCCCEEEESS----CCHHH--HHHH-HHHH
T ss_pred cCCCceEEcCchHH-HHHHcCCC------ccCeEEEECCCCcEEEEEcCC----CCHHH--HHHH-HHHH
Confidence 46789999999999 99999987 569999999999999877643 34555 6666 5554
No 64
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.04 E-value=8.2e-06 Score=54.02 Aligned_cols=43 Identities=9% Similarity=0.255 Sum_probs=38.2
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++|++++|.++. +++.||+. ..|++||||++|+|++.+.+.
T Consensus 92 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~ 134 (145)
T 3erw_A 92 NKLTFPIVLDSKGE-LMKEYHII------TIPTSFLLNEKGEIEKTKIGP 134 (145)
T ss_dssp TTCCSCEEECSSSH-HHHHTTCC------EESEEEEECTTCCEEEEEESC
T ss_pred cCCceeEEEcCchh-HHHhcCcC------ccCeEEEEcCCCcEEEEEcCC
Confidence 57789999999999 99999987 579999999999999977653
No 65
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.00 E-value=2.1e-05 Score=53.31 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.0
Q ss_pred cccceEEEEeCCCh-----HHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRR-----EKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~-----~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++||++.|.++. .+++.||+. ..|++||||++|+|++.+.+.
T Consensus 92 ~~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~ 140 (160)
T 3lor_A 92 FGIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQ 140 (160)
T ss_dssp TTCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESC
T ss_pred cCCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCc
Confidence 56789999998763 288999987 579999999999999988754
No 66
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=97.99 E-value=7.8e-06 Score=55.59 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=35.6
Q ss_pred cccceEEEEeC---CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 14 GTVTAKVLSSR---NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 14 ~~l~fpLLSD~---~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
.+++|++++|. +.. +++.||+. ..|++||||++|+|++.+
T Consensus 84 ~~~~~~~~~d~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 84 DKSYWNQVLLQKDDVKD-VLESYCIV------GFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp HTCCSEEEEECHHHHHH-HHHHTTCC------SSCEEEEECTTSEEEEEC
T ss_pred hCCCCeEEecccchhHH-HHHHhCCC------cCCeEEEECCCCeEEEee
Confidence 56889999999 678 99999987 569999999999999876
No 67
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=97.99 E-value=8.8e-06 Score=54.19 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=36.0
Q ss_pred cccceEEEEeC---CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 14 GTVTAKVLSSR---NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 14 ~~l~fpLLSD~---~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
++++|++++|. +.. +++.||+. ..|++||||++|+|++...
T Consensus 89 ~~~~~~~~~d~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~ 132 (148)
T 3fkf_A 89 DTLSWDQVCDFTGLSSE-TAKQYAIL------TLPTNILLSPTGKILARDI 132 (148)
T ss_dssp TTCCSEEECCSCGGGCH-HHHHTTCC------SSSEEEEECTTSBEEEESC
T ss_pred cCCCceEEEccCCcchH-HHHhcCCC------CcCEEEEECCCCeEEEecC
Confidence 57899999998 668 99999987 5799999999999998664
No 68
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.96 E-value=1.3e-05 Score=56.14 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=44.2
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++++||+++|.++. +++.||.+.- ...|++||||++|+|++.+.... +.++ +.+. |+.+
T Consensus 121 ~~~~~~~~~d~~~~-~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~~l 179 (183)
T 3lwa_A 121 NGLDYPSIYDPPFM-TAASLGGVPA---SVIPTTIVLDKQHRPAAVFLREV----TSKD--VLDV-ALPL 179 (183)
T ss_dssp TTCCSCEEECTTCG-GGGGTTTCCT---TCCSEEEEECTTSCEEEEECSCC----CHHH--HHHH-HHHH
T ss_pred cCCCccEEECCcch-HHHHhccCCC---CCCCeEEEECCCCcEEEEEcCCC----CHHH--HHHH-HHHH
Confidence 57889999999999 9999985421 25689999999999999876432 3455 5555 5543
No 69
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=97.96 E-value=2.9e-05 Score=50.63 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=42.1
Q ss_pred ccc-ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 14 GTV-TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 14 ~~l-~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+++ +|++++|.++. +++.||+. ..|++||||++|+|+ .+.+.. +.++ +.+. |+.+
T Consensus 78 ~~~~~~~~~~d~~~~-~~~~~~i~------~~P~~~~id~~g~i~-~~~g~~----~~~~--l~~~-l~~~ 133 (136)
T 1zzo_A 78 YPVKTFTQLADTDGS-VWANFGVT------QQPAYAFVDPHGNVD-VVRGRM----SQDE--LTRR-VTAL 133 (136)
T ss_dssp TTCTTSEEEECTTCH-HHHHTTCC------SSSEEEEECTTCCEE-EEESCC----CHHH--HHHH-HHHH
T ss_pred cCCCceEEEEcCCcH-HHHHcCCC------CCceEEEECCCCCEE-EEecCC----CHHH--HHHH-HHHH
Confidence 355 89999999999 99999987 569999999999998 555432 2455 5555 5544
No 70
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.89 E-value=1.3e-05 Score=54.08 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=37.1
Q ss_pred cccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++|+ ++.|.+.. +++.||+. ..|++||||++|+|++.+.+.
T Consensus 94 ~~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~~id~~G~i~~~~~g~ 137 (156)
T 1kng_A 94 YGNPFGRVGVDANGR-ASIEWGVY------GVPETFVVGREGTIVYKLVGP 137 (156)
T ss_dssp HCCCCSEEEEETTSH-HHHHTTCC------SSCEEEEECTTSBEEEEEESC
T ss_pred cCCCCceeeeCchhH-HHHhcCcC------ccCeEEEEcCCCCEEEEEeCC
Confidence 467788 88999999 99999987 568999999999999977654
No 71
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=97.86 E-value=4.2e-05 Score=52.01 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=43.8
Q ss_pred ccc-eEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVT-AKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~-fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++ |+++.|.++. +++.||+. ..|++||||++|+|++.+.+.. +.++ +.+. |+.+.
T Consensus 99 ~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-i~~~~ 155 (164)
T 2h30_A 99 NYPKLPVVTDNGGT-IAQNLNIS------VYPSWALIGKDGDVQRIVKGSI----NEAQ--ALAL-IRNPN 155 (164)
T ss_dssp CCTTSCEEECTTCH-HHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CHHH--HHHH-HHCTT
T ss_pred CCCcceEEEcCchH-HHHHcCCC------ccceEEEECCCCcEEEEEcCCC----CHHH--HHHH-HHHHH
Confidence 566 8999999999 99999987 5699999999999999776432 3455 6566 66543
No 72
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=97.83 E-value=1.3e-05 Score=55.15 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=36.6
Q ss_pred cccceE-EEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAK-VLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fp-LLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++|+ ++.|.++. +++.||+. ..|++||||++|+|++.+.+.
T Consensus 102 ~~~~~~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~ 145 (168)
T 2b1k_A 102 LGNPYALSLFDGDGM-LGLDLGVY------GAPETFLIDGNGIIRYRHAGD 145 (168)
T ss_dssp HCCCCSEEEEETTCH-HHHHHTCC------SSSEEEEECTTSBEEEEEESC
T ss_pred cCCCCceeeECcchH-HHHHcCcc------ccCEEEEECCCCeEEEEEeCC
Confidence 456777 67899999 99999997 569999999999999988754
No 73
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=97.82 E-value=1.5e-05 Score=53.87 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=45.1
Q ss_pred cccceEEEEe---CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSS---RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD---~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.+++|++++| .... +++.||+. ..|++||||++|+|++.+.+.. ..++ +.+. |+.+.
T Consensus 84 ~~~~~~~~~d~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~~~~ 143 (154)
T 3ia1_A 84 YPRFIPLLASDRDRPHE-VAARFKVL------GQPWTFVVDREGKVVALFAGRA----GREA--LLDA-LLLAG 143 (154)
T ss_dssp CTTEEECBCCSSCCHHH-HHTTSSBC------SSCEEEEECTTSEEEEEEESBC----CHHH--HHHH-HHHTT
T ss_pred cCCCcccccccccchHH-HHHHhCCC------cccEEEEECCCCCEEEEEcCCC----CHHH--HHHH-HHhcc
Confidence 5779999999 5667 99999987 5799999999999999876432 3456 6666 77765
No 74
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.81 E-value=3.9e-06 Score=57.72 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=46.4
Q ss_pred cccceEEEEeCC---ChHHHHHhCCCccCC--------C-CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLSSRN---RREKEDRIGVLIEPA--------G-IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLSD~~---~~~vak~yGv~~~~~--------G-~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
++++|++++|.. ++ ++++||+..... + ...|++|||| +|+|++.+.... ..+.++ +++. |+
T Consensus 97 ~~~~~~~l~d~~~~~~~-~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~--~~~~~~--l~~~-l~ 169 (172)
T 2k6v_A 97 FHPSFLGLSGSPEAVRE-AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDK--AEATDR--VVAD-LQ 169 (172)
T ss_dssp HCTTEEEECCCHHHHHH-HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHH--HTCHHH--HHHH-HH
T ss_pred hCCCcEEEeCCHHHHHH-HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCC--CCCHHH--HHHH-HH
Confidence 467899999987 67 999999864311 1 2469999999 999999886543 225677 7777 76
Q ss_pred hh
Q psy11208 82 SF 83 (116)
Q Consensus 82 ~l 83 (116)
.+
T Consensus 170 ~l 171 (172)
T 2k6v_A 170 AL 171 (172)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 75
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.79 E-value=4.1e-05 Score=52.53 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=40.8
Q ss_pred cccceEEEEeCC---ChHHHHHhCCCccCC-----C----CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLSSRN---RREKEDRIGVLIEPA-----G----IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLSD~~---~~~vak~yGv~~~~~-----G----~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
++++|++|+|.. +. ++++||+..... + ...|++||||++|+|++.+.... +.++ +++. |+
T Consensus 89 ~~~~~~~l~~~~~~~~~-~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~ 160 (171)
T 2rli_A 89 FHPRLLGLTGSTKQVAQ-ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----SAEQ--ISDS-VR 160 (171)
T ss_dssp TCTTCCEEECCHHHHHH-HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----CHHH--HHHH-HH
T ss_pred cCCCeEEEeCCHHHHHH-HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----CHHH--HHHH-HH
Confidence 457888888743 46 999999873210 0 12459999999999999876532 3445 5555 44
Q ss_pred h
Q psy11208 82 S 82 (116)
Q Consensus 82 ~ 82 (116)
.
T Consensus 161 ~ 161 (171)
T 2rli_A 161 R 161 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=3.1e-06 Score=57.89 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=42.9
Q ss_pred ccccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 13 ~~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
+++++||+++|.++. +++.||+... ..|++||||++|+|++.+... ....+.+ +|+.
T Consensus 89 ~~~~~~~~~~d~~~~-~~~~~~~~~~----~~P~~~lid~~G~i~~~~~g~--~~~~l~~--~l~~ 145 (159)
T 2ls5_A 89 STGVTYPLGLDPGAD-IFAKYALRDA----GITRNVLIDREGKIVKLTRLY--NEEEFAS--LVQQ 145 (159)
Confidence 357899999999999 9999997421 358999999999999987542 1224555 5555
No 77
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.77 E-value=1.1e-05 Score=55.06 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=41.2
Q ss_pred cccceEEEE---eCCChHHHHHhCCCccC----C-C----CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLS---SRNRREKEDRIGVLIEP----A-G----IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLS---D~~~~~vak~yGv~~~~----~-G----~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
++++|++|+ |..++ ++++||+.... . + ...+++||||++|+|++.+.... +.++ +++. |+
T Consensus 86 ~~~~~~~l~~~~d~~~~-~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~ 157 (164)
T 2ggt_A 86 FSPKLVGLTGTREEVDQ-VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK----RKGE--IAAS-IA 157 (164)
T ss_dssp TCSSCEEEECCHHHHHH-HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC----CHHH--HHHH-HH
T ss_pred cCCCeEEEeCCHHHHHH-HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC----CHHH--HHHH-HH
Confidence 457888884 55667 99999987321 0 0 01238999999999999886432 3455 6666 55
Q ss_pred hh
Q psy11208 82 SF 83 (116)
Q Consensus 82 ~l 83 (116)
.+
T Consensus 158 ~l 159 (164)
T 2ggt_A 158 TH 159 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 78
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=97.77 E-value=2.9e-05 Score=53.31 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=40.5
Q ss_pred cc-ceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TV-TAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l-~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++ +|+++.| ++. +++.||+. ..|++||||++|+|++ ....+ +.++ +.+. |+.+.
T Consensus 109 ~~~~~~~~~d-~~~-~~~~~~v~------~~P~~~lid~~G~i~~--~g~~~---~~~~--l~~~-l~~l~ 163 (165)
T 3ha9_A 109 GDPSWIMVMD-DGS-LVEKFNVR------SIDYIVIMDKSSNVLY--AGTTP---SLGE--LESV-IKSVQ 163 (165)
T ss_dssp SCTTSEEEEC-CSH-HHHHTTCC------SSSEEEEEETTCCEEE--EEESC---CHHH--HHHH-HHHC-
T ss_pred CCCCeeEEeC-hHH-HHHHhCCC------CceEEEEEcCCCcEEE--eCCCC---CHHH--HHHH-HHHHh
Confidence 45 9999999 888 99999987 5699999999999999 32221 3445 5555 66553
No 79
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=97.75 E-value=2.6e-05 Score=52.89 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=41.6
Q ss_pred cccceEEEEeCCC--hHHHHHhC--CCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 14 GTVTAKVLSSRNR--REKEDRIG--VLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 14 ~~l~fpLLSD~~~--~~vak~yG--v~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++++||++.|... ..+++.|| +. ..|++||||++|+|++.+.+.. +.++ +.+. |+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~--l~~~-l~~l~ 139 (151)
T 3raz_A 78 TPVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGEV----NEKS--LTDA-VKLAH 139 (151)
T ss_dssp SCCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSCC----CHHH--HHHH-HHHHH
T ss_pred cCCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCCC----CHHH--HHHH-HHHHH
Confidence 5778999998753 22788888 43 5699999999999998775432 3455 5555 66654
No 80
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.73 E-value=9.7e-06 Score=55.71 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred ccceEEEEeCCCh--HHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 15 TVTAKVLSSRNRR--EKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 15 ~l~fpLLSD~~~~--~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
+++|++++|.++. .+++.||+. ..|++||||++|+|++.+.. ..+.++ .+..
T Consensus 89 ~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g----~~~~e~--~~~~ 142 (152)
T 2lrt_A 89 NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGEN----IKDLDE--AIKK 142 (152)
T ss_dssp TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTT----CSCHHH--HHHH
T ss_pred CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCC----HHHHHH--HHHH
Confidence 4789999999873 289999987 56999999999999986543 234555 5544
No 81
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=97.73 E-value=4.2e-05 Score=50.79 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=40.2
Q ss_pred cccc-eEEEEeCCCh-HHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 14 GTVT-AKVLSSRNRR-EKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 14 ~~l~-fpLLSD~~~~-~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
++++ |++++|.++. ++++.||+. ..|++||||++|+|++.+.+. .+..+ +++.
T Consensus 86 ~~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~--~l~~ 140 (148)
T 3hcz_A 86 KKIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDD--FLVQ 140 (148)
T ss_dssp HTCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHH--HHHH
T ss_pred cCCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHH--HHHH
Confidence 3555 9999998752 189999987 579999999999999876432 45666 6666
No 82
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.66 E-value=5.8e-05 Score=60.22 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=38.4
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++||+++|.+.. +++.|++. ..|++||||++|+|++.+...
T Consensus 142 ~~l~fpv~~D~~~~-l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~ 184 (352)
T 2hyx_A 142 LGISYPIALDNNYA-TWTNYRNR------YWPAEYLIDATGTVRHIKFGE 184 (352)
T ss_dssp HTCCSCEEECTTSH-HHHHTTCC------EESEEEEECTTSBEEEEEESB
T ss_pred cCCCccEEeCCcHH-HHHHcCCC------ccCEEEEEeCCCeEEEEEcCC
Confidence 46789999999999 99999987 579999999999999988754
No 83
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=97.63 E-value=7.6e-05 Score=50.65 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=36.7
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++|+++.|.. + +++.|+.+........|++||||++|+|++.+...
T Consensus 89 ~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 136 (165)
T 3or5_A 89 QGIIYPVMMATP-E-LIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP 136 (165)
T ss_dssp HTCCSCEEECCH-H-HHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC
T ss_pred cCCCCceEecCH-H-HHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC
Confidence 578899999976 7 99999655332223579999999999999877543
No 84
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=97.62 E-value=3.9e-05 Score=57.57 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=39.2
Q ss_pred ccceEEEEeCCChHHHHHhCCCccCCC---CcceEEEEECCCCCEEEEEEccC
Q psy11208 15 TVTAKVLSSRNRREKEDRIGVLIEPAG---IPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 15 ~l~fpLLSD~~~~~vak~yGv~~~~~G---~~~RatFIID~dG~I~~~~~~~~ 64 (116)
...+++|+|.+++ +++++|+.....+ ...|.++||| ||+|++.++.+.
T Consensus 132 ~~~i~~laD~~~e-ftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~ 182 (199)
T 4h86_A 132 TTHIKFASDPGCA-FTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETN 182 (199)
T ss_dssp CSSEEEEECGGGH-HHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSS
T ss_pred cccccccCCcchH-HHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCC
Confidence 4578999999999 9999998654322 2579999999 999999998654
No 85
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=97.51 E-value=6.3e-05 Score=50.48 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=34.1
Q ss_pred cccce-EEEEeCC---ChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 14 GTVTA-KVLSSRN---RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 14 ~~l~f-pLLSD~~---~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
++++| ++++|.. +. +++.||+. ..|++||||++|+|++..
T Consensus 87 ~~~~~~~~~~d~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 87 DKLDLSTQFHEGLGKESE-LYKKYDLR------KGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp HTCCGGGEEECTTGGGSH-HHHHTTGG------GCCCEEEECTTSBEEEES
T ss_pred hCCCCceeeecccccchH-HHHHcCCC------CCCcEEEECCCCEEEEcc
Confidence 46788 8899985 57 99999987 579999999999999864
No 86
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=97.30 E-value=0.00072 Score=45.19 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=39.6
Q ss_pred eEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 18 AKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 18 fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+++++|.++. +++.||+. ..|++||||++|+|++.... ..+.++ +.+. |+.+.
T Consensus 90 ~~~~~d~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~g----~~~~~~--l~~~-l~~~~ 142 (152)
T 2lja_A 90 IQLHMGTDRT-FMDAYLIN------GIPRFILLDRDGKIISANMT----RPSDPK--TAEK-FNELL 142 (152)
T ss_dssp EEEECSSCTH-HHHHTTCC------SSCCEEEECTTSCEEESSCC----CTTCHH--HHHH-HHHHH
T ss_pred ceeecCcchh-HHHHcCcC------CCCEEEEECCCCeEEEccCC----CCCHHH--HHHH-HHHHh
Confidence 5788888888 99999987 56899999999999985432 223455 5566 66654
No 87
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.26 E-value=0.00037 Score=46.59 Aligned_cols=42 Identities=5% Similarity=-0.003 Sum_probs=34.2
Q ss_pred cccceEEEEeCCCh-HHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 14 GTVTAKVLSSRNRR-EKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 14 ~~l~fpLLSD~~~~-~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
.+++|+.+.|.++. .+++.|++. ..|++||||++|+|++...
T Consensus 89 ~~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 89 FAKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp SCTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEE
T ss_pred cccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCC
Confidence 56789999998763 157888886 5799999999999998765
No 88
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=97.12 E-value=0.0005 Score=48.17 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=38.3
Q ss_pred CChHHHHHhCCCccC--CC-CcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 25 NRREKEDRIGVLIEP--AG-IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 25 ~~~~vak~yGv~~~~--~G-~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
..+ ++++||+.... .+ ...|++||||++|+|++++... ..+.++ +++. |+++.
T Consensus 106 ~~~-~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~---~~~~~~--i~~~-l~~~~ 161 (170)
T 3me7_A 106 LFK-LLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGV---NYNYLE--FVNA-LRLAR 161 (170)
T ss_dssp HHH-HHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESS---SCCHHH--HHHH-HHHHT
T ss_pred HHH-HHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCC---CCCHHH--HHHH-HHHhh
Confidence 456 99998875321 11 2468899999999999988543 345788 8888 77765
No 89
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.12 E-value=0.00027 Score=48.16 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=31.4
Q ss_pred cccceEEE--EeCCChHHHH-H--------hCCCccCCCCcce---EEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVL--SSRNRREKED-R--------IGVLIEPAGIPLR---GLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLL--SD~~~~~vak-~--------yGv~~~~~G~~~R---atFIID~dG~I~~~~~~~ 63 (116)
++++||++ .|.++. +++ . ||++ +...| ++||||++|+|++.+...
T Consensus 95 ~~~~~~~~~~~d~~~~-~~~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~G~i~~~~~g~ 153 (170)
T 2p5q_A 95 FKSEFPIFDKIDVNGE-NASPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKDGQVVDRYYPT 153 (170)
T ss_dssp TCCCSCBBCCCBSSST-TBCHHHHHHHTHHHHTT----CSCCCSTTCEEEECTTSCEEEEECTT
T ss_pred cCCCceeEeeeccCCC-chHHHHHHHHhcCCCcc----CCcccccccEEEECCCCCEEEeeCCC
Confidence 47788998 688776 542 2 3542 12345 999999999999987543
No 90
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.11 E-value=0.00026 Score=49.69 Aligned_cols=48 Identities=17% Similarity=0.031 Sum_probs=31.8
Q ss_pred cccceEEEE--eCCChHHHH-HhCCCccCC---C------CcceEEEEECCCCCEEEEEEc
Q psy11208 14 GTVTAKVLS--SRNRREKED-RIGVLIEPA---G------IPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak-~yGv~~~~~---G------~~~RatFIID~dG~I~~~~~~ 62 (116)
++++||+++ |.++. .+. .|+.+.... | ...|++||||++|+|++.+..
T Consensus 109 ~~~~~p~~~~~d~~~~-~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g 168 (183)
T 2obi_A 109 YNVKFDMFSKICVNGD-DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 168 (183)
T ss_dssp TTCCSEEBCCCCCSST-TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECT
T ss_pred cCCCceEEeeeccCCc-chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCC
Confidence 578899998 77776 543 452221100 1 124799999999999998754
No 91
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.11 E-value=0.00031 Score=47.85 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=32.3
Q ss_pred cccceEEEE--eCCChHHHH-Hh--------CCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLS--SRNRREKED-RI--------GVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak-~y--------Gv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++++||+++ |.++. +++ .| |+.... -...|++||||++|+|++.+...
T Consensus 94 ~~~~~~~~~~~d~~~~-~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g~ 152 (169)
T 2v1m_A 94 YGVQFDMFSKIKVNGS-DADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSPT 152 (169)
T ss_dssp HCCCSEEBCCCCCSST-TSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECTT
T ss_pred cCCCCceEEEEeecCc-cccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCCC
Confidence 578899997 77776 543 34 443100 01247999999999999987653
No 92
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00028 Score=48.96 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=29.8
Q ss_pred cccceEEEEeC--CChHHHHH--------hCCCccCCCCc----ceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLSSR--NRREKEDR--------IGVLIEPAGIP----LRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLSD~--~~~~vak~--------yGv~~~~~G~~----~RatFIID~dG~I~~~~~~~ 63 (116)
++++||+++|. ++..+++. ||+. +++ .|++||||++|+|++.+...
T Consensus 94 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~----~~P~i~~~~~~~lid~~G~i~~~~~g~ 153 (171)
T 3cmi_A 94 YGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML----GLRGIKWNFEKFLVDKKGKVYERYSSL 153 (171)
T ss_dssp -CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS----SCCSCCSTTCEEEECSSSCEEEEECTT
T ss_pred cCCCceEEeeccCCCccchHHHHHHHhccCCcC----CCCcccccceEEEECCCCCEEEEeCCC
Confidence 57889999864 34312233 4443 222 23999999999999987643
No 93
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=97.05 E-value=0.00016 Score=53.17 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.7
Q ss_pred eEEEEECCCCCEEEEEEcc
Q psy11208 45 RGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~~ 63 (116)
|+|||||++|+|++.+...
T Consensus 160 ~ttflID~~G~i~~~~~g~ 178 (207)
T 2r37_A 160 FEKFLVGPDGIPIMRWHHR 178 (207)
T ss_dssp TCEEEECTTSCEEEEECTT
T ss_pred ceEEEECCCCcEEEEECCC
Confidence 7999999999999988643
No 94
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=97.01 E-value=0.00018 Score=53.40 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=22.4
Q ss_pred eEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 45 RGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
|+|||||++|+|++.+..... .++ +.+. |+.+
T Consensus 178 pttfLID~~G~vv~~~~g~~~----~~~--l~~~-I~~l 209 (215)
T 2i3y_A 178 FEKFLVGPDGIPVMRWSHRAT----VSS--VKTD-ILAY 209 (215)
T ss_dssp TCEEEECTTSCEEEEECTTSC----HHH--HHHH-HHHH
T ss_pred ceEEEECCCCeEEEEeCCCCC----HHH--HHHH-HHHH
Confidence 799999999999998854322 345 5555 5544
No 95
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.01 E-value=0.00043 Score=48.85 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=31.7
Q ss_pred cccceEEEE--eCCChHHHH-HhCCCccCC---CC------cceEEEEECCCCCEEEEEEcc
Q psy11208 14 GTVTAKVLS--SRNRREKED-RIGVLIEPA---GI------PLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak-~yGv~~~~~---G~------~~RatFIID~dG~I~~~~~~~ 63 (116)
++++||+++ |.++. .+. .|+.+.... |. ..|++||||++|+|++.+...
T Consensus 111 ~~~~~p~~~~~d~~~~-~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~ 171 (185)
T 2gs3_A 111 YNVKFDMFSKICVNGD-DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPM 171 (185)
T ss_dssp TTCCSEEBCCCBSSST-TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTT
T ss_pred cCCCCeeeeeeccCCh-hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCC
Confidence 577899997 66666 443 452221100 11 147999999999999987653
No 96
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=96.82 E-value=0.00018 Score=51.02 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=29.8
Q ss_pred cccceEEEE--eCCChHHHH-H--------hCCCccCCCCc----ceEEEEECCCCCEEEEEEc
Q psy11208 14 GTVTAKVLS--SRNRREKED-R--------IGVLIEPAGIP----LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak-~--------yGv~~~~~G~~----~RatFIID~dG~I~~~~~~ 62 (116)
++++||+++ |.++. +++ . ||+. +++ .+++||||++|+|++.+..
T Consensus 111 ~~~~~p~l~~~D~~~~-~~~~~~~~l~~~~~~v~----~~P~i~~~~~~~lid~~G~i~~~~~g 169 (190)
T 2vup_A 111 FKAEFPIMAKINVNGE-NAHPLYEYMKKTKPGIL----KTKAIKWNFTSFLIDRDGVPVERFSP 169 (190)
T ss_dssp HCCCSCBBCCCBSSST-TBCHHHHHHHHHSCCGG----GCCSCCSTTCEEEECTTSCEEEEECT
T ss_pred cCCCeEEEeecccCcc-cccHHHHHHHhhcCCcC----CCccccccceEEEECCCCcEEEEECC
Confidence 567888887 66666 533 2 3443 221 1289999999999998754
No 97
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=96.76 E-value=0.00025 Score=50.26 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred cccceEEEE--eCCChHHHH-Hh--------CCCccCCCC-cce---EEEEECCCCCEEEEEEc
Q psy11208 14 GTVTAKVLS--SRNRREKED-RI--------GVLIEPAGI-PLR---GLFIIDPKGVLRQITVN 62 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak-~y--------Gv~~~~~G~-~~R---atFIID~dG~I~~~~~~ 62 (116)
++++||+++ |.++. .+. .| +++ |. ..| ++||||++|+|++.+..
T Consensus 109 ~~~~~p~~~~~d~~~~-~~~~~~~~l~~~~~~~~----~~~~iP~~~~~~liD~~G~i~~~~~g 167 (187)
T 3dwv_A 109 FKAEFPIMAKINVNGE-NAHPLYEYMKKTKPGIL----ATKAIKWNFTSFLIDRDGVPVERFSP 167 (187)
T ss_dssp CCCSSCBBCCBCCSCC--CCHHHHHHHHHSCCSB----SSSSCCSTTCEEEECTTSCEEEEECT
T ss_pred cCCCCceeeccccCCc-chhHHHHHHHhhcCCcc----CCCccccceeEEEECCCCCEEEEECC
Confidence 378899997 66665 432 33 332 22 356 99999999999998754
No 98
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=96.67 E-value=0.0011 Score=48.31 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.3
Q ss_pred ceEEEEECCCCCEEEEEEcc
Q psy11208 44 LRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~ 63 (116)
.|+|||||++|+|++.+...
T Consensus 173 ~p~tflID~~G~i~~~~~g~ 192 (208)
T 2f8a_A 173 NFEKFLVGPDGVPLRRYSRR 192 (208)
T ss_dssp TTCEEEECTTSCEEEEECTT
T ss_pred CceEEEEcCCCcEEEEeCCC
Confidence 48899999999999988644
No 99
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=96.66 E-value=0.00035 Score=49.14 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=34.7
Q ss_pred cccceEEEE--eCCChHHHH---HhCCCccCCCCcce-------EEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 14 GTVTAKVLS--SRNRREKED---RIGVLIEPAGIPLR-------GLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 14 ~~l~fpLLS--D~~~~~vak---~yGv~~~~~G~~~R-------atFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
++++||+++ |.++. .+. .|++. ..+ ++||||++|+|++.+... .+.++ +.+. |+
T Consensus 112 ~~~~~p~~~~~d~~g~-~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~g~----~~~~~--l~~~-i~ 177 (181)
T 2p31_A 112 YSVSFPMFSKIAVTGT-GAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWDPT----VSVEE--VRPQ-IT 177 (181)
T ss_dssp HCCCSCBBCCCCCSST-TSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEECTT----SCHHH--HHHH-HH
T ss_pred cCCCceeEeecccCCc-cchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeCCC----CCHHH--HHHH-HH
Confidence 467788886 45554 322 23222 123 899999999999987542 23456 6666 66
Q ss_pred hh
Q psy11208 82 SF 83 (116)
Q Consensus 82 ~l 83 (116)
.+
T Consensus 178 ~l 179 (181)
T 2p31_A 178 AL 179 (181)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 100
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=95.62 E-value=0.00033 Score=46.30 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=30.5
Q ss_pred eEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 18 AKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 18 fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
+++..|..+. +++.||+. ..|++||||++|+|++...
T Consensus 90 ~~~~~~~~~~-~~~~~~v~------~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 90 IPYRSGPASN-VTAKYGIT------GIPALVIVKKDGTLISMNG 126 (143)
Confidence 5556677778 99999986 5799999999999998753
No 101
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=96.32 E-value=0.00027 Score=47.50 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=25.5
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEEC-CCCCEEEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIID-PKGVLRQIT 60 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID-~dG~I~~~~ 60 (116)
|.+.. +++.||+. ..|++|||| ++|+|++.+
T Consensus 95 d~~~~-~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 95 EAVQK-LSKHFNVE------SIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHHH-HHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred hHHHH-HHHHhCCC------CCCEEEEEECCCCeEEEec
Confidence 44567 99999986 569999999 999998753
No 102
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=96.18 E-value=0.0051 Score=42.21 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=33.8
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+ +++.||+. ..|+++|+|++|++++.. +.. ..+.++ +++. |+.+
T Consensus 106 ~~-l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~--l~~~-l~~~ 150 (154)
T 2ju5_A 106 QE-LKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAA--YVSK-VKSA 150 (154)
T ss_dssp HH-HHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHH--HHHH-HHHH
T ss_pred HH-HHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHH--HHHH-HHHH
Confidence 46 99999997 579999999999999876 433 234566 6666 6554
No 103
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=95.93 E-value=0.0013 Score=43.90 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.4
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEEC-CCCCEEEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIID-PKGVLRQIT 60 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID-~dG~I~~~~ 60 (116)
|.++. +++.||+. ..|++|||| ++|+|++.+
T Consensus 95 d~~~~-~~~~~~v~------~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 95 KGMEF-LTTGFDVK------SIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHHH-HHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHH-HHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence 44567 99999986 579999999 999998754
No 104
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=95.34 E-value=0.0029 Score=41.91 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEEC-CCCCEEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIID-PKGVLRQI 59 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID-~dG~I~~~ 59 (116)
|.+.. +++.||+. ..|++|||| ++|+|++.
T Consensus 95 ~~~~~-~~~~~~v~------~~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 95 STVSE-LGKTFGVE------SIPTLITINADTGAIIGT 125 (144)
T ss_dssp HHHHH-HHHHHTCC------SSSEEEEEETTTCCEEES
T ss_pred hHHHH-HHHHcCCC------CCCEEEEEECCCCeEEec
Confidence 44556 99999987 579999999 89999874
No 105
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=95.26 E-value=0.026 Score=39.41 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=26.2
Q ss_pred ceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 44 LRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+++||||++|+|+.++.... ..+.++ +++. |+.|
T Consensus 134 ~~~~~liD~~G~i~~~~~g~~--~~~~~~--l~~~-ik~L 168 (170)
T 4hde_A 134 GTSFYLIDQNGKVMKKYSGIS--NTPYED--IIRD-MKRL 168 (170)
T ss_dssp CCEEEEECTTSCEEEEEESSS--SCCHHH--HHHH-HHHH
T ss_pred eeEEEEEcCCCeEEEEECCCC--CCCHHH--HHHH-HHHH
Confidence 368999999999998876432 234677 8888 7765
No 106
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=95.20 E-value=0.046 Score=35.39 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=39.1
Q ss_pred ccceEEEE---eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVTAKVLS---SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~fpLLS---D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++.|-.+. |.+.. +++.||+. ..|+++++|++|++++.+.+. .+.++ +.+. |+.+.
T Consensus 58 ~v~~~~v~~~~d~~~~-~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~----~~~~~--l~~~-l~~~~ 116 (126)
T 2l57_A 58 KFNIYYARLEEEKNID-LAYKYDAN------IVPTTVFLDKEGNKFYVHQGL----MRKNN--IETI-LNSLG 116 (126)
T ss_dssp SCEEEEEETTSSHHHH-HHHHTTCC------SSSEEEEECTTCCEEEEEESC----CCHHH--HHHH-HHHHC
T ss_pred CeEEEEEeCCCCchHH-HHHHcCCc------ceeEEEEECCCCCEEEEecCC----CCHHH--HHHH-HHHHh
Confidence 45554443 45567 99999987 579999999999998876542 23455 6666 66554
No 107
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=95.10 E-value=0.034 Score=36.09 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=32.9
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.. +++.||+. ..|+++++|++|++++...+.. ..++ +.+. |+.+
T Consensus 75 ~~~-~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~~----~~~~--l~~~-l~~~ 119 (130)
T 2kuc_A 75 GVE-LRKKYGVH------AYPTLLFINSSGEVVYRLVGAE----DAPE--LLKK-VKLG 119 (130)
T ss_dssp HHH-HHHHTTCC------SSCEEEEECTTSCEEEEEESCC----CHHH--HHHH-HHHH
T ss_pred hHH-HHHHcCCC------CCCEEEEECCCCcEEEEecCCC----CHHH--HHHH-HHHH
Confidence 446 99999987 5799999999999988765432 3455 5566 5554
No 108
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=94.96 E-value=0.041 Score=36.01 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=28.0
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
|.+.. +++.||+... ...|+++++|++|++++....
T Consensus 75 ~~~~~-l~~~~~v~~~---~~~Pt~~~~d~~G~~~~~~~g 110 (133)
T 3fk8_A 75 DRNLE-LSQAYGDPIQ---DGIPAVVVVNSDGKVRYTTKG 110 (133)
T ss_dssp TSSHH-HHHHTTCGGG---GCSSEEEEECTTSCEEEECCS
T ss_pred cchHH-HHHHhCCccC---CccceEEEECCCCCEEEEecC
Confidence 55667 9999999210 157999999999999987655
No 109
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=94.79 E-value=0.0051 Score=42.63 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.0
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECCC-CCEEEEE
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDPK-GVLRQIT 60 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~d-G~I~~~~ 60 (116)
+. +++.||+. ..|++||||++ |+|++..
T Consensus 118 ~~-l~~~~~v~------~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 118 EA-LTKKYSVE------SIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HH-HHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HH-HHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence 56 99999987 57999999998 9998854
No 110
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=93.69 E-value=0.06 Score=37.32 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=16.9
Q ss_pred EEEECCCCCEEEEEEccCCCC
Q psy11208 47 LFIIDPKGVLRQITVNVPRTG 67 (116)
Q Consensus 47 tFIID~dG~I~~~~~~~~~~~ 67 (116)
+||||++|+|++.+.......
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~ 159 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIE 159 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGG
T ss_pred EEEECCCCCEEEEECCCCCHH
Confidence 999999999999886554433
No 111
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=93.28 E-value=0.019 Score=38.15 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=32.9
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEE--EEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR--QITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~--~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.+.. +++.||+. ..|+++++|++|+++ +...+ ....++ +++. |+.++
T Consensus 79 ~~~~-l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G----~~~~~~--l~~~-l~~~~ 127 (134)
T 2fwh_A 79 QDVA-LLKHLNVL------GLPTILFFDGQGQEHPQARVTG----FMDAET--FSAH-LRDRQ 127 (134)
T ss_dssp HHHH-HHHHTTCC------SSSEEEEECTTSCBCGGGCBCS----CCCHHH--HHHH-HHHC-
T ss_pred hHHH-HHHHcCCC------CCCEEEEECCCCCEeeeeeeee----ccCHHH--HHHH-HHhcC
Confidence 3456 99999987 579999999999986 33322 123556 6666 77766
No 112
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=92.14 E-value=0.034 Score=38.19 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.7
Q ss_pred HHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 30 EDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 30 ak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
++.||+. ..|+++|||++|+|++...+
T Consensus 123 ~~~~~v~------~~Pt~~lid~~G~~~~~~~G 149 (172)
T 3f9u_A 123 RVKFGAN------AQPFYVLIDNEGNPLNKSYA 149 (172)
T ss_dssp HHHHSCC------CSSEEEEECTTSCBSSCCBC
T ss_pred HHHcCCC------CcceEEEECCCCCEEeeccC
Confidence 6889987 57999999999999876553
No 113
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=91.38 E-value=0.36 Score=31.50 Aligned_cols=53 Identities=8% Similarity=0.125 Sum_probs=34.8
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.. +++.||+. ..|+++++|++|++. ...+. .+.++ +.+. |+.+
T Consensus 84 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~----~~~~~--l~~~-l~~~ 137 (141)
T 3hxs_A 84 IYIYKVNVDKEPE-LARDFGIQ------SIPTIWFVPMKGEPQ-VNMGA----LSKEQ--LKGY-IDKV 137 (141)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSSEEEEECSSSCCE-EEESC----CCHHH--HHHH-HHHT
T ss_pred eEEEEEECCCCHH-HHHHcCCC------CcCEEEEEeCCCCEE-EEeCC----CCHHH--HHHH-HHHH
Confidence 444333 355556 99999997 579999999999986 33322 23455 5555 6554
No 114
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=90.63 E-value=0.48 Score=31.08 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=34.8
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.. +++.||+. ..|+++++|++|++. ...+ ..+.++ +.+. |+.+
T Consensus 71 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~~~G~~~-~~~G----~~~~~~--l~~~-l~~~ 124 (136)
T 2l5l_A 71 IVIYKVDTEKEQE-LAGAFGIR------SIPSILFIPMEGKPE-MAQG----AMPKAS--FKKA-IDEF 124 (136)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSCEEEEECSSSCCE-EEES----CCCHHH--HHHH-HHHH
T ss_pred EEEEEEeCCCCHH-HHHHcCCC------CCCEEEEECCCCcEE-EEeC----CCCHHH--HHHH-HHHH
Confidence 444333 344556 99999987 579999999999987 3332 233455 6566 5554
No 115
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=90.56 E-value=0.48 Score=29.58 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+.. +++.||+. ..|+ |+++++|++.....+. +.++ +.+. |+.+
T Consensus 66 ~~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~--l~~~-l~~~ 109 (111)
T 2pu9_C 66 ENKT-LAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDK--LLEA-IQAA 109 (111)
T ss_dssp TTHH-HHHHHCCS------BSSE-EEEESSSSEEEEEESS-----CHHH--HHHH-HHHH
T ss_pred chHH-HHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHH--HHHH-HHHh
Confidence 3456 99999987 4565 8888999998866542 2455 5555 5543
No 116
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=90.13 E-value=0.68 Score=28.26 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=35.3
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+. |.+.. +++.||+. ..|+++++ ++|++...+.+. .+.++ +.+. |+.+
T Consensus 53 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~~ 106 (107)
T 2i4a_A 53 VTVAKVNIDDNPE-TPNAYQVR------SIPTLMLV-RDGKVIDKKVGA----LPKSQ--LKAW-VESA 106 (107)
T ss_dssp EEEEEEETTTCCH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHHT
T ss_pred EEEEEEECCCCHH-HHHhcCCC------ccCEEEEE-eCCEEEEEecCC----CCHHH--HHHH-HHhc
Confidence 4444433 55667 99999987 56899999 899998866532 23455 5555 6543
No 117
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=89.28 E-value=0.82 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.4
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+ .|.+.. +++.||+. ..|+++++ ++|++.....+
T Consensus 53 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 92 (108)
T 2trx_A 53 LTVAKLNIDQNPG-TAPKYGIR------GIPTLLLF-KNGEVAATKVG 92 (108)
T ss_dssp EEEEEEETTTCTT-HHHHTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred cEEEEEECCCCHH-HHHHcCCc------ccCEEEEE-eCCEEEEEEec
Confidence 444333 355677 99999987 56889999 79999876654
No 118
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=89.17 E-value=0.5 Score=29.80 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=36.3
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.+ +++.||+. ..|+++++ ++|++...+.+. ...++ +.+. ++..
T Consensus 50 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~~ 103 (112)
T 2voc_A 50 LKIVKIDVDENQE-TAGKYGVM------SIPTLLVL-KDGEVVETSVGF----KPKEA--LQEL-VNKH 103 (112)
T ss_dssp CEEEEEETTTCCS-HHHHTTCC------SBSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHTT
T ss_pred cEEEEEECCCCHH-HHHHcCCC------cccEEEEE-eCCEEEEEEeCC----CCHHH--HHHH-HHHH
Confidence 444433 356678 99999987 57999999 899998866543 23455 5555 5544
No 119
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=88.35 E-value=0.98 Score=32.22 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=30.3
Q ss_pred CChHHHHHh--------CCCccCCCCcceEEEEECCCCCEEEEEEccCCCC----CCccHHHHHHH
Q psy11208 25 NRREKEDRI--------GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTG----KTLFGYFTIRS 78 (116)
Q Consensus 25 ~~~~vak~y--------Gv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~----r~~~e~~iL~~ 78 (116)
+.. +++.| |+. ..|+++++|++|++.+...+-++.+ ..+.+ +|+.
T Consensus 85 ~~~-l~~~y~~~~q~~~gv~------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~--~L~~ 141 (173)
T 3ira_A 85 RPD-IDNIYMTVCQIILGRG------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLE--LVPR 141 (173)
T ss_dssp CHH-HHHHHHHHHHHHHSCC------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHH--HHHH
T ss_pred cCc-HHHHHHHHHHHHcCCC------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHH--HHHH
Confidence 345 88888 765 5699999999999998643322221 24666 6666
No 120
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=88.25 E-value=1 Score=27.77 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=35.0
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+. |.+.+ +++.||+. ..|+++++ ++|++.+...+. ++.++ +.+. |+.+
T Consensus 58 v~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~--l~~~-l~~~ 111 (115)
T 1thx_A 58 LKVVKLEIDPNPT-TVKKYKVE------GVPALRLV-KGEQILDSTEGV----ISKDK--LLSF-LDTH 111 (115)
T ss_dssp CEEEEEESTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHHH
T ss_pred EEEEEEEcCCCHH-HHHHcCCC------ceeEEEEE-cCCEEEEEecCC----CCHHH--HHHH-HHHH
Confidence 5554443 44556 99999987 56899999 899998866533 23445 5555 5543
No 121
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=87.55 E-value=0.93 Score=27.62 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=34.7
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+. |.+.. +++.|++. ..|+++++ ++|++.....+. .+.++ +.+. |+.
T Consensus 54 ~~~~~v~~~~~~~-~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~--l~~~-l~~ 106 (109)
T 3tco_A 54 AVFGRLNVDENQK-IADKYSVL------NIPTTLIF-VNGQLVDSLVGA----VDEDT--LEST-VNK 106 (109)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHH
T ss_pred ceEEEEccccCHH-HHHhcCcc------cCCEEEEE-cCCcEEEeeecc----CCHHH--HHHH-HHH
Confidence 4554443 44556 99999987 56899999 899998876543 23455 5555 554
No 122
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=87.37 E-value=0.76 Score=29.91 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=33.5
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.|.+.+ +++.||+. ..|+++++ ++|++.....+. ++.++ +.+. |+.+
T Consensus 75 ~d~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~~ 121 (123)
T 1oaz_A 75 IDQNPG-TAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQ--LKEF-LDAN 121 (123)
T ss_dssp TTSCTT-TGGGGTCC------BSSEEEEE-ESSSEEEEEESC----CCHHH--HHHH-HTTT
T ss_pred CCCCHH-HHHHcCCC------ccCEEEEE-ECCEEEEEEeCC----CCHHH--HHHH-HHHH
Confidence 356677 99999987 57899999 899998766543 23455 6666 6543
No 123
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=87.12 E-value=1.9 Score=26.28 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=26.7
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|--+. |.+.+ +++.||+. ..|+++++ ++|++.+...+
T Consensus 52 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 91 (107)
T 1dby_A 52 LKCVKLNTDESPN-VASEYGIR------SIPTIMVF-KGGKKCETIIG 91 (107)
T ss_dssp CEEEEEETTTCHH-HHHHHTCC------SSCEEEEE-SSSSEEEEEES
T ss_pred eEEEEEECCCCHH-HHHHCCCC------cCCEEEEE-eCCEEEEEEeC
Confidence 4444333 44556 99999987 45776666 79999886654
No 124
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=86.72 E-value=0.94 Score=28.76 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=30.0
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+.+ +++.||+. ..|+ |+++++|++.....+. ..++ +.+. |+.+.
T Consensus 80 ~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~--l~~~-i~~~~ 123 (124)
T 1faa_A 80 NKT-LAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDK--LLEA-IQAAR 123 (124)
T ss_dssp THH-HHHHHCCS------SSSE-EEEEETTEEEEEEESS-----CHHH--HHHH-HHHHT
T ss_pred hHH-HHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHH--HHHH-HHHhh
Confidence 456 99999987 4565 7777899998766542 2455 6666 66543
No 125
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=86.26 E-value=0.75 Score=28.13 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=28.3
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.+ +++.||+. ..|+++++ ++|++...+.+
T Consensus 50 v~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 89 (105)
T 1nsw_A 50 VTVAKLNVDENPE-TTSQFGIM------SIPTLILF-KGGRPVKQLIG 89 (105)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred cEEEEEECcCCHH-HHHHcCCc------cccEEEEE-eCCeEEEEEec
Confidence 4444433 45566 99999987 56899999 89998876653
No 126
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=86.19 E-value=1.6 Score=26.12 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.0
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.+ +++.||+. ..|+++++ ++|++.....+
T Consensus 48 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g 87 (104)
T 2e0q_A 48 VGFGKLNSDENPD-IAARYGVM------SLPTVIFF-KDGEPVDEIIG 87 (104)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSCEEEEE-ETTEEEEEEES
T ss_pred ceEEEEECCCCHH-HHHhCCcc------ccCEEEEE-ECCeEhhhccC
Confidence 4444443 55566 99999987 46888888 79999876654
No 127
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=86.12 E-value=1.2 Score=28.59 Aligned_cols=45 Identities=4% Similarity=-0.026 Sum_probs=30.6
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
.|.+.+ +++.|||. ..|+ |++-++|++.....+ ++.++ +++. |+.
T Consensus 59 ~d~~~~-l~~~~~V~------~~PT-~~~~~~G~~v~~~~G-----~~~~~--l~~~-i~k 103 (105)
T 3zzx_A 59 VDECED-IAQDNQIA------CMPT-FLFMKNGQKLDSLSG-----ANYDK--LLEL-VEK 103 (105)
T ss_dssp TTTCHH-HHHHTTCC------BSSE-EEEEETTEEEEEEES-----CCHHH--HHHH-HHH
T ss_pred cccCHH-HHHHcCCC------eecE-EEEEECCEEEEEEeC-----cCHHH--HHHH-HHh
Confidence 355567 99999997 4565 555589999876654 34566 6666 654
No 128
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=85.79 E-value=1.5 Score=26.52 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=35.2
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|--+. |.+.+ +++.||+. ..|+++++ ++|++.....+. .+.++ +.+. |+.+
T Consensus 51 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~--l~~~-l~~~ 104 (109)
T 2yzu_A 51 LLVAKLDVDENPK-TAMRYRVM------SIPTVILF-KDGQPVEVLVGA----QPKRN--YQAK-IEKH 104 (109)
T ss_dssp BEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHTT
T ss_pred eEEEEEECCCCHh-HHHhCCCC------cCCEEEEE-eCCcEeeeEeCC----CCHHH--HHHH-HHHH
Confidence 4544443 45567 99999987 56889999 899988766542 23455 6565 5544
No 129
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=85.52 E-value=0.41 Score=31.67 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=35.0
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhCcC------cc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF------SV 88 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~~~------~~ 88 (116)
+.|-.+. |.+.. +++.|++. ..|+.+++ ++|++.....+.. ..++ +.+. |+.+-.. ..
T Consensus 57 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~--l~~~-l~~~l~~~~~~~~~~ 121 (140)
T 3hz4_A 57 AVFGRINIATNPW-TAEKYGVQ------GTPTFKFF-CHGRPVWEQVGQI----YPSI--LKNA-VRDMLQHGEECIRKS 121 (140)
T ss_dssp SEEEEEETTTCHH-HHHHHTCC------EESEEEEE-ETTEEEEEEESSC----CHHH--HHHH-HHHHHHHHHHHHHTS
T ss_pred eEEEEEECCcCHh-HHHHCCCC------cCCEEEEE-eCCcEEEEEcCCC----CHHH--HHHH-HHHHhcccccCcccc
Confidence 4554433 44556 99999987 46766666 7899887665432 2344 4444 4433211 55
Q ss_pred ccCCCCCCCCC
Q psy11208 89 CPANWKPDSPT 99 (116)
Q Consensus 89 ~p~~w~~g~~~ 99 (116)
.|.+|+-+.++
T Consensus 122 ~~~~~~~~~~~ 132 (140)
T 3hz4_A 122 TPVGQDITGYV 132 (140)
T ss_dssp BC---------
T ss_pred cccCccceeee
Confidence 67777666543
No 130
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=85.49 E-value=1.6 Score=27.73 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=33.6
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+ .|.+.+ +++.||+. ..|+++++ ++|++.....+. .+.++ +.+. |+.
T Consensus 64 v~~~~vd~d~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~ 116 (119)
T 1w4v_A 64 VVMAKVDIDDHTD-LAIEYEVS------AVPTVLAM-KNGDVVDKFVGI----KDEDQ--LEAF-LKK 116 (119)
T ss_dssp SEEEEEETTTTHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHH
T ss_pred eEEEEEeCCCCHH-HHHHcCCC------cccEEEEE-eCCcEEEEEcCC----CCHHH--HHHH-HHH
Confidence 444443 344556 99999997 56888888 899998766532 23445 5555 544
No 131
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=85.45 E-value=0.46 Score=32.41 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=29.8
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.|.+.+ ++++|||. ..|+++++ ++|+++....+. ++.++ +.+. |+.+
T Consensus 77 ~d~~~~-la~~~~V~------~iPT~~~f-k~G~~v~~~~G~----~~~~~--l~~~-i~~~ 123 (142)
T 2es7_A 77 LEQSEA-IGDRFNVR------RFPATLVF-TDGKLRGALSGI----HPWAE--LLTL-MRSI 123 (142)
T ss_dssp HHHHHH-HHHTTTCC------SSSEEEEE-SCC----CEESC----CCHHH--HHHH-HHHH
T ss_pred CCCCHH-HHHhcCCC------cCCeEEEE-eCCEEEEEEeCC----CCHHH--HHHH-HHHH
Confidence 455667 99999998 67999999 899988766543 23455 5555 5543
No 132
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=85.08 E-value=1.5 Score=26.56 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=33.4
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+. |.+.+ +++.|++. ..|+.++++ +|++.....+. .+.++ +.+. |+.
T Consensus 52 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~~-~G~~~~~~~g~----~~~~~--l~~~-l~~ 104 (106)
T 3die_A 52 ADILKLDVDENPS-TAAKYEVM------SIPTLIVFK-DGQPVDKVVGF----QPKEN--LAEV-LDK 104 (106)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SBSEEEEEE-TTEEEEEEESC----CCHHH--HHHH-HHT
T ss_pred cEEEEEECCcCHH-HHHhCCCc------ccCEEEEEe-CCeEEEEEeCC----CCHHH--HHHH-HHH
Confidence 4554443 45556 99999987 568888885 89888765442 23455 5555 543
No 133
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=85.00 E-value=0.99 Score=29.46 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=34.3
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+ .|.+.+ +++.||+. ..|+++++ ++|++.....+. .+.++ +.+. |+.
T Consensus 73 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~ 125 (128)
T 2o8v_B 73 LTVAKLNIDQNPG-TAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQ--LKEF-LDA 125 (128)
T ss_dssp EEEEEEETTTCCT-TSGGGTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHH
T ss_pred eEEEEEECCCCHH-HHHHcCCC------ccCEEEEE-eCCEEEEEEcCC----CCHHH--HHHH-HHH
Confidence 444333 355667 89999987 56899999 899998766543 23445 5555 554
No 134
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=84.49 E-value=1.9 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=27.8
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+ .|.+.. +++.|++. ..|++++++ +|++.....+
T Consensus 56 ~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G 95 (109)
T 3f3q_A 56 ADFYKLDVDELGD-VAQKNEVS------AMPTLLLFK-NGKEVAKVVG 95 (109)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSSEEEEEE-TTEEEEEEES
T ss_pred CEEEEEECCCCHH-HHHHcCCC------ccCEEEEEE-CCEEEEEEeC
Confidence 444333 345567 99999998 568888887 8998876654
No 135
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.44 E-value=1.8 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=33.6
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.. +++.|++. ..|+++++++ |++...+.. .++.++ +.+. |+.+
T Consensus 62 ~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G----~~~~~~--l~~~-l~~~ 115 (133)
T 1x5d_A 62 VKLAAVDATVNQV-LASRYGIR------GFPTIKIFQK-GESPVDYDG----GRTRSD--IVSR-ALDL 115 (133)
T ss_dssp EEEEEEETTTCCH-HHHHHTCC------SSSEEEEEET-TEEEEEECS----CCSHHH--HHHH-HHHH
T ss_pred EEEEEEECCCCHH-HHHhCCCC------eeCeEEEEeC-CCceEEecC----CCCHHH--HHHH-HHHH
Confidence 444333 244567 99999987 5799999987 876654433 234555 6666 5443
No 136
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=84.41 E-value=0.75 Score=29.92 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=27.3
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+ .|.+.. +++.||+. ..|+++++ ++|+++....+
T Consensus 78 v~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 117 (139)
T 3d22_A 78 LMFLVIDVDELSD-FSASWEIK------ATPTFFFL-RDGQQVDKLVG 117 (139)
T ss_dssp SEEEEEETTTSHH-HHHHTTCC------EESEEEEE-ETTEEEEEEES
T ss_pred CEEEEEeCcccHH-HHHHcCCC------cccEEEEE-cCCeEEEEEeC
Confidence 444443 345566 99999987 45776666 89999887654
No 137
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=83.64 E-value=2.4 Score=26.84 Aligned_cols=51 Identities=10% Similarity=-0.058 Sum_probs=32.4
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|--+ .|.+.. +++.||+. ..|+++++ ++|++.....+. +.++ +.+. |+.
T Consensus 63 v~~~~vd~d~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~--l~~~-l~~ 114 (116)
T 3qfa_C 63 VIFLEVDVDDCQD-VASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEK--LEAT-INE 114 (116)
T ss_dssp SEEEEEETTTTHH-HHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHH--HHHH-HHH
T ss_pred CEEEEEECCCCHH-HHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHH--HHHH-HHH
Confidence 444333 344556 99999987 46777777 789988766532 3455 5555 554
No 138
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=83.64 E-value=2.6 Score=25.87 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=24.5
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.|.+.. +++.||+. ..|++++++ +|++.....+.. +.++ +.+. |+.+
T Consensus 57 ~~~~~~-l~~~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~--l~~~-l~~~ 103 (105)
T 4euy_A 57 LQDMQE-IAGRYAVF------TGPTVLLFY-NGKEILRESRFI----SLEN--LERT-IQLF 103 (105)
T ss_dssp ECCC----------C------CCCEEEEEE-TTEEEEEEESSC----CHHH--HHHH-HHTT
T ss_pred CCCCHH-HHHhcCCC------CCCEEEEEe-CCeEEEEEeCCc----CHHH--HHHH-HHHh
Confidence 466677 99999987 568888885 898887665432 3455 6565 6543
No 139
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=83.24 E-value=2.2 Score=28.49 Aligned_cols=54 Identities=4% Similarity=-0.011 Sum_probs=36.6
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++.|-.+. |.+.. +++.||+. ..|++++++ +|++.....+ ...++ +.+. |+.+.
T Consensus 63 ~v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G-----~~~~~--l~~~-i~~~l 117 (153)
T 2wz9_A 63 QVSFVKLEAEGVPE-VSEKYEIS------SVPTFLFFK-NSQKIDRLDG-----AHAPE--LTKK-VQRHA 117 (153)
T ss_dssp TSEEEEEETTTSHH-HHHHTTCC------SSSEEEEEE-TTEEEEEEES-----SCHHH--HHHH-HHHHS
T ss_pred CeEEEEEECCCCHH-HHHHcCCC------CCCEEEEEE-CCEEEEEEeC-----CCHHH--HHHH-HHHHh
Confidence 34554442 34556 99999987 579999999 9998876543 23456 6677 66654
No 140
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=82.09 E-value=2.9 Score=25.16 Aligned_cols=40 Identities=5% Similarity=0.164 Sum_probs=26.1
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+.|-.+ .|.+.+ +++.||+. ..|+.+++ ++|++.....+.
T Consensus 51 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 91 (105)
T 1fb6_A 51 IAVYKLNTDEAPG-IATQYNIR------SIPTVLFF-KNGERKESIIGA 91 (105)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEEEC
T ss_pred eEEEEEcCcchHH-HHHhCCCC------cccEEEEE-eCCeEEEEEecC
Confidence 444333 344556 99999987 45665555 799998766543
No 141
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=82.03 E-value=1.8 Score=28.35 Aligned_cols=46 Identities=7% Similarity=0.069 Sum_probs=30.4
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEE-CCCCC--EEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFII-DPKGV--LRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFII-D~dG~--I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
|.+.. +++.||+. ..|+++++ |++|+ ++....+. +.++ +.+. |+.+
T Consensus 79 ~~~~~-l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~--l~~~-l~~~ 127 (133)
T 3cxg_A 79 DIHPK-LNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQND--IEKA-FQKY 127 (133)
T ss_dssp TTCHH-HHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHH--HHHH-HHHH
T ss_pred cchHH-HHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHH--HHHH-HHHH
Confidence 34556 99999987 56889888 45565 77665432 3456 6666 6654
No 142
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=81.74 E-value=1.6 Score=31.46 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=33.1
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
..+.+..+.|.+.. +++.|||. ..|+.++++++|++....
T Consensus 183 ~~i~v~~~~~~~~~-l~~~f~v~------~~Pslvl~~~~g~~~~~~ 222 (244)
T 3q6o_A 183 KGVAVRRVLNTEAN-VVRKFGVT------DFPSCYLLFRNGSVSRVP 222 (244)
T ss_dssp TTEEEEEEETTCHH-HHHHHTCC------CSSEEEEEETTSCEEECC
T ss_pred CceEEEEEeCchHH-HHHHcCCC------CCCeEEEEeCCCCeEeec
Confidence 35667888887778 99999998 469999999999998754
No 143
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=81.66 E-value=2.5 Score=25.81 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=33.1
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+. |.+.. +++.||+. ..|+++++ ++|++.....+. .+.++ +.+. |+.
T Consensus 55 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~--l~~~-l~~ 107 (111)
T 3gnj_A 55 FGFYYVDVEEEKT-LFQRFSLK------GVPQILYF-KDGEYKGKMAGD----VEDDE--VEQM-IAD 107 (111)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSCEEEEE-ETTEEEEEEESS----CCHHH--HHHH-HHH
T ss_pred eEEEEEECCcChh-HHHhcCCC------cCCEEEEE-ECCEEEEEEecc----CCHHH--HHHH-HHH
Confidence 4554433 44556 99999987 56888888 689887665533 23445 5555 544
No 144
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=81.30 E-value=2.8 Score=28.29 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=34.2
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|--+ .|.+.. +++.||+. ..|+++++ ++|++...+.+. .+.++ +.+. |+.
T Consensus 97 v~~~~vd~~~~~~-l~~~~~i~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~ 149 (155)
T 2ppt_A 97 VRLAKIDTQAHPA-VAGRHRIQ------GIPAFILF-HKGRELARAAGA----RPASE--LVGF-VRG 149 (155)
T ss_dssp CEEEEEETTTSTH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHH
T ss_pred EEEEEEeCCccHH-HHHHcCCC------cCCEEEEE-eCCeEEEEecCC----CCHHH--HHHH-HHH
Confidence 444433 345567 99999987 56888888 699998766543 23455 5555 554
No 145
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=81.11 E-value=0.9 Score=30.73 Aligned_cols=31 Identities=3% Similarity=-0.047 Sum_probs=24.1
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~ 61 (116)
|.+.. +++.|++. ..|+++ ++++|+++++..
T Consensus 64 d~~~~-l~~~~~v~------~~Pt~~-~~~~G~~v~~~~ 94 (149)
T 3gix_A 64 DQTAV-YTQYFDIS------YIPSTV-FFFNGQHMKVDY 94 (149)
T ss_dssp TTCCH-HHHHTTCC------SSSEEE-EEETTEEEEEEC
T ss_pred CcCHH-HHHHcCCC------ccCeEE-EEECCeEEEeec
Confidence 66778 99999997 567777 677999985444
No 146
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=80.80 E-value=2.9 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=25.9
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.+ +++.||+. ..|+.+++ ++|++.+...+
T Consensus 56 ~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 95 (112)
T 1t00_A 56 IEIVKLNIDENPG-TAAKYGVM------SIPTLNVY-QGGEVAKTIVG 95 (112)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred eEEEEEEcCCCHH-HHHhCCCC------cccEEEEE-eCCEEEEEEeC
Confidence 4444433 44566 99999987 45665555 89999876654
No 147
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=80.26 E-value=2.5 Score=27.22 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=29.1
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
|.+.+ +++.||+. ..|+.+ +.++|++.....+. +.++ +.+. |+.+
T Consensus 78 d~~~~-l~~~~~v~------~~Pt~~-~~~~G~~~~~~~G~-----~~~~--l~~~-l~~~ 122 (124)
T 1xfl_A 78 DELKS-VASDWAIQ------AMPTFM-FLKEGKILDKVVGA-----KKDE--LQST-IAKH 122 (124)
T ss_dssp TTSHH-HHHHTTCC------SSSEEE-EEETTEEEEEEESC-----CHHH--HHHH-HHHH
T ss_pred ccCHH-HHHHcCCC------ccCEEE-EEECCEEEEEEeCC-----CHHH--HHHH-HHHh
Confidence 44556 99999987 456654 44899998866541 3455 5555 5543
No 148
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=80.02 E-value=0.71 Score=32.07 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=28.8
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCC------CCCccHHHHHHH
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRT------GKTLFGYFTIRS 78 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~------~r~~~e~~iL~~ 78 (116)
++..|++. ..|+++++|++|+++...++.... ..++++ +|+.
T Consensus 92 ~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~--ll~~ 139 (151)
T 3ph9_A 92 KNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPL--LIEN 139 (151)
T ss_dssp GGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHH--HHHH
T ss_pred hHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHH--HHHH
Confidence 66677764 679999999999998866554111 124666 7766
No 149
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=79.99 E-value=2.8 Score=26.31 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=25.6
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.. +++.||+. ..|+ |++.++|++...+.+
T Consensus 66 ~~~~~vd~~~~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G 105 (122)
T 2vlu_A 66 AVFLKVDVDELKP-IAEQFSVE------AMPT-FLFMKEGDVKDRVVG 105 (122)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSSE-EEEEETTEEEEEEES
T ss_pred cEEEEEECCCCHH-HHHHcCCC------cccE-EEEEeCCEEEEEEeC
Confidence 4443332 44556 99999987 3465 555589999876654
No 150
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=79.94 E-value=1.2 Score=27.52 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.2
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
++.|-.+. |.+.. +++.||+. ..|+ |++.++|++.....+
T Consensus 56 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G 96 (112)
T 1ep7_A 56 KVIFLKVDVDAVAA-VAEAAGIT------AMPT-FHVYKDGVKADDLVG 96 (112)
T ss_dssp TSEEEEEETTTTHH-HHHHHTCC------BSSE-EEEEETTEEEEEEES
T ss_pred CeEEEEEECCchHH-HHHHcCCC------cccE-EEEEECCeEEEEEcC
Confidence 34444433 44556 99999987 4566 555589999876653
No 151
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=79.80 E-value=2.1 Score=26.75 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=35.6
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++.|-.+ .|.+.. +++.||+. ..|+++++ ++|++.....+.. +.++ +.+. |+..
T Consensus 50 ~v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~--l~~~-~~~~ 104 (110)
T 2l6c_A 50 QVAISSVDSEARPE-LMKELGFE------RVPTLVFI-RDGKVAKVFSGIM----NPRE--LQAL-YASI 104 (110)
T ss_dssp TSCEEEEEGGGCHH-HHHHTTCC------SSCEEEEE-ESSSEEEEEESCC----CHHH--HHHH-HHTC
T ss_pred CcEEEEEcCcCCHH-HHHHcCCc------ccCEEEEE-ECCEEEEEEcCCC----CHHH--HHHH-HHHH
Confidence 3444433 244566 99999987 56899999 8999987665432 3455 5555 6554
No 152
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.50 E-value=0.62 Score=29.83 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=31.8
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHH
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS 78 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~ 78 (116)
+.|-.+ .|.+.. +++.|++. ..|++++++++|.+...+.. .+..++ +++.
T Consensus 68 ~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~--l~~~ 118 (130)
T 2dml_A 68 VKVGAVNADKHQS-LGGQYGVQ------GFPTIKIFGANKNKPEDYQG----GRTGEA--IVDA 118 (130)
T ss_dssp SEEEEEETTTCHH-HHHHHTCC------SSSEEEEESSCTTSCEECCS----CCSHHH--HHHH
T ss_pred eEEEEEeCCCCHH-HHHHcCCC------ccCEEEEEeCCCCeEEEeec----CCCHHH--HHHH
Confidence 444333 344556 99999987 57999999999984443322 234555 6555
No 153
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=79.31 E-value=0.81 Score=30.03 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.8
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
|.+.. +++.||+. ..| ||++..+|+++....+.
T Consensus 79 d~~~~-l~~~~~v~------~~P-t~~~~~~G~~v~~~~G~ 111 (135)
T 3emx_A 79 SAARL-EMNKAGVE------GTP-TLVFYKEGRIVDKLVGA 111 (135)
T ss_dssp HHHHH-HHHHHTCC------SSS-EEEEEETTEEEEEEESC
T ss_pred hhhHH-HHHHcCCc------eeC-eEEEEcCCEEEEEEeCC
Confidence 45567 99999997 457 55555599998877653
No 154
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=80.56 E-value=0.38 Score=30.94 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=23.6
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECC-CCCE--EEEEEc
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDP-KGVL--RQITVN 62 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~-dG~I--~~~~~~ 62 (116)
.+.. +++.||+. ..|+++++|+ +|++ .....+
T Consensus 66 ~~~~-~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G 100 (130)
T 2lst_A 66 EGQE-LARRYRVP------GTPTFVFLVPKAGAWEEVGRLFG 100 (130)
Confidence 3456 88999887 5799999996 5988 554443
No 155
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=79.17 E-value=3.7 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.. +++.||+. ..|+++++ ++|++...+.+
T Consensus 83 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 122 (140)
T 1v98_A 83 LKVVKVNVDEHPG-LAARYGVR------SVPTLVLF-RRGAPVATWVG 122 (140)
T ss_dssp EEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred eEEEEEECCCCHH-HHHHCCCC------ccCEEEEE-eCCcEEEEEeC
Confidence 4444333 44456 99999987 46888888 79999876654
No 156
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=78.98 E-value=2.6 Score=27.06 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=30.8
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHh
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS 81 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~ 81 (116)
.|.+.. +++.||+. ..|+++++ ++|++.....+. .+.++ +.+. |+
T Consensus 82 ~d~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~ 126 (128)
T 3ul3_B 82 LDKNES-LARKFSVK------SLPTIILL-KNKTMLARKDHF----VSSND--LIAL-IK 126 (128)
T ss_dssp GGGCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHH--HHHH-HT
T ss_pred CCCCHH-HHHHcCCC------CcCEEEEE-ECCEEEEEecCC----CCHHH--HHHH-HH
Confidence 345567 99999987 57999999 689887755332 33455 5555 44
No 157
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=78.55 E-value=2.9 Score=25.20 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=22.5
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
|.+.+ +++.||+. ..|+ |++.++|++...+.+
T Consensus 61 ~~~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~g 92 (106)
T 1xwb_A 61 DECED-IAMEYNIS------SMPT-FVFLKNGVKVEEFAG 92 (106)
T ss_dssp TTCHH-HHHHTTCC------SSSE-EEEEETTEEEEEEES
T ss_pred cchHH-HHHHcCCC------cccE-EEEEcCCcEEEEEcC
Confidence 44556 99999987 4566 555579998876643
No 158
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=78.37 E-value=3.6 Score=26.00 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=25.7
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+ .|.+.+ +++.||+. ..|+.++ .++|++.....+
T Consensus 62 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~-~~~G~~~~~~~G 101 (114)
T 2oe3_A 62 VRFVKCDVDESPD-IAKECEVT------AMPTFVL-GKDGQLIGKIIG 101 (114)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SBSEEEE-EETTEEEEEEES
T ss_pred CEEEEEECCCCHH-HHHHCCCC------cccEEEE-EeCCeEEEEEeC
Confidence 444433 244556 99999987 4566555 489999876654
No 159
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=78.29 E-value=4.1 Score=25.85 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=33.0
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.+ +++.||+. ..|+++++ ++|++.....+. +.++ +.+. |+.+
T Consensus 67 v~~~~vd~d~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~--l~~~-l~~~ 119 (121)
T 2j23_A 67 VGFYKVDVDEQSQ-IAQEVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSK--LQAA-ITQH 119 (121)
T ss_dssp SEEEEEETTTCHH-HHHHHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHH--HHHH-HHHH
T ss_pred EEEEEEECcCCHH-HHHHcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHH--HHHH-HHHh
Confidence 554443 344556 99999987 45777666 589988766432 3455 5555 6554
No 160
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=78.03 E-value=2.6 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=26.4
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+. |.+.. +++.||+. ..|+.+++ ++|++.....+
T Consensus 58 v~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g 97 (113)
T 1ti3_A 58 VTFLKVDVDELKA-VAEEWNVE------AMPTFIFL-KDGKLVDKTVG 97 (113)
T ss_dssp EEEEEEETTTCHH-HHHHHHCS------STTEEEEE-ETTEEEEEEEC
T ss_pred cEEEEEEccccHH-HHHhCCCC------cccEEEEE-eCCEEEEEEec
Confidence 4444433 44556 99999987 45776666 79999876654
No 161
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=77.54 E-value=3.8 Score=25.55 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=22.3
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
|.+.+ +++.||+. ..|+. ++.++|++.....+
T Consensus 72 ~~~~~-~~~~~~v~------~~Pt~-~~~~~G~~~~~~~G 103 (117)
T 2xc2_A 72 DKLEE-TARKYNIS------AMPTF-IAIKNGEKVGDVVG 103 (117)
T ss_dssp TTSHH-HHHHTTCC------SSSEE-EEEETTEEEEEEES
T ss_pred CccHH-HHHHcCCC------ccceE-EEEeCCcEEEEEeC
Confidence 34456 99999987 45664 44479998876654
No 162
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=76.95 E-value=7.5 Score=25.34 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=33.1
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++.|-.+. |.+.. +++.||+. ..|+++++ ++|++...+.+. .+.++ +.+. |+.
T Consensus 87 ~~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~ 140 (148)
T 3p2a_A 87 KVRFVKVNTEAEPA-LSTRFRIR------SIPTIMLY-RNGKMIDMLNGA----VPKAP--FDNW-LDE 140 (148)
T ss_dssp TCEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHH--HHHH-HHH
T ss_pred ceEEEEEECcCCHH-HHHHCCCC------ccCEEEEE-ECCeEEEEEeCC----CCHHH--HHHH-HHH
Confidence 35554443 44556 99999987 46777777 589988755432 23455 5555 544
No 163
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=76.69 E-value=0.98 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCC------CCCccHHHHHHHHHhhh
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRT------GKTLFGYFTIRSVISSF 83 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~------~r~~~e~~iL~~~l~~l 83 (116)
++..|++. +...|+++++|++|+++....+.... ..+.++ +++. |+.+
T Consensus 93 ~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~--l~~~-l~~~ 146 (164)
T 1sen_A 93 KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQ--VVQG-MKEA 146 (164)
T ss_dssp SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHH--HHHH-HHHH
T ss_pred HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHH--HHHH-HHHH
Confidence 45667653 23579999999999998755443221 245666 7776 5543
No 164
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=75.99 E-value=5.2 Score=24.56 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=31.6
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++.|-.+ .|.+.. +++.||+. ..|+.+++ ++|++.....+ . +.++ +.+. |+.
T Consensus 59 ~~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g-~----~~~~--l~~~-l~~ 111 (118)
T 2vm1_A 59 GAIFLKVDVDELKD-VAEAYNVE------AMPTFLFI-KDGEKVDSVVG-G----RKDD--IHTK-IVA 111 (118)
T ss_dssp TSEEEEEETTTSHH-HHHHTTCC------SBSEEEEE-ETTEEEEEEES-C----CHHH--HHHH-HHH
T ss_pred CcEEEEEEcccCHH-HHHHcCCC------cCcEEEEE-eCCeEEEEecC-C----CHHH--HHHH-HHH
Confidence 3444433 344456 99999987 45766555 79998876643 1 3445 5555 544
No 165
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=75.27 E-value=4.4 Score=24.58 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=32.6
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++.|-.+. |.+.+ +++.||+. ..|+.+++ ++|++...+.+. .+.++ +++. |+.
T Consensus 56 ~~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~--l~~~-l~~ 109 (111)
T 3uvt_A 56 GVKIAEVDCTAERN-ICSKYSVR------GYPTLLLF-RGGKKVSEHSGG----RDLDS--LHRF-VLS 109 (111)
T ss_dssp CEEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEECSC----CSHHH--HHHH-HHH
T ss_pred ceEEEEEeccccHh-HHHhcCCC------cccEEEEE-eCCcEEEeccCC----cCHHH--HHHH-HHh
Confidence 44554443 34456 99999987 45776666 789887655332 34566 6666 543
No 166
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=75.26 E-value=6.8 Score=23.35 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=31.5
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++.|-.+. |.+.. +++.||+. ..|+.+++ ++|++.....+ .+.++ +.+. |+.
T Consensus 50 ~~~~~~v~~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~--l~~~-l~~ 102 (104)
T 2vim_A 50 EVEFAKVDVDQNEE-AAAKYSVT------AMPTFVFI-KDGKEVDRFSG-----ANETK--LRET-ITR 102 (104)
T ss_dssp TSEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHH--HHHH-HHH
T ss_pred CCEEEEEeccCCHH-HHHHcCCc------cccEEEEE-eCCcEEEEEeC-----CCHHH--HHHH-HHh
Confidence 34554443 33456 99999987 45765555 58998876653 23445 5555 554
No 167
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=75.09 E-value=2.2 Score=25.81 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=26.9
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|--+. |.+.. +++.|++. ..|+++++ ++|++.....+
T Consensus 52 ~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g 91 (105)
T 3m9j_A 52 VIFLEVDVDDCQD-VASESEVK------SMPTFQFF-KKGQKVGEFSG 91 (105)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------BSSEEEEE-ETTEEEEEEES
T ss_pred eEEEEEEhhhhHH-HHHHcCCC------cCcEEEEE-ECCeEEEEEeC
Confidence 4443332 34456 99999987 56888888 68888776543
No 168
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=74.80 E-value=5.2 Score=24.41 Aligned_cols=39 Identities=3% Similarity=-0.127 Sum_probs=26.0
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|-.+ .|.+.+ +++.||+. ..|+.+++ ++|++.....+
T Consensus 53 ~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 92 (107)
T 1gh2_A 53 AVFLEVDVHQCQG-TAATNNIS------ATPTFQFF-RNKVRIDQYQG 92 (107)
T ss_dssp SEEEEEETTTSHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred cEEEEEECccCHH-HHHhcCCC------cccEEEEE-ECCeEEEEEeC
Confidence 444433 244556 99999987 46777666 78988876543
No 169
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=74.64 E-value=2.5 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=27.2
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
++.|--+. |.+.+ +++.||+. ..|+++++ ++|++.....+
T Consensus 54 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G 94 (112)
T 3d6i_A 54 NVSFLSIDADENSE-ISELFEIS------AVPYFIII-HKGTILKELSG 94 (112)
T ss_dssp TSEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEECS
T ss_pred CEEEEEEecccCHH-HHHHcCCC------cccEEEEE-ECCEEEEEecC
Confidence 35554443 44556 99999987 46777777 69998876543
No 170
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=72.58 E-value=6 Score=27.37 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=28.7
Q ss_pred HHHHhCCCccCCCCcceEEEEECCC-CCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPK-GVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~d-G~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+++.|++. ..|++++||++ |...... . +.+.++ .++. |+.+
T Consensus 93 l~~~y~v~------~~P~~~fld~~~G~~l~~~-~----g~~~~~--fl~~-L~~~ 134 (153)
T 2dlx_A 93 YIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSS--FLDQ-VTGF 134 (153)
T ss_dssp HHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHH--HHHH-HHHH
T ss_pred HHHHcCCC------CCCEEEEEeCCCCcEeeec-C----CCCHHH--HHHH-HHHH
Confidence 88899986 56899999998 8655443 1 245677 7776 5543
No 171
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=72.39 E-value=7.4 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=31.6
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+ .|.+.+ +++.||+. ..|+.+++ ++|++.....+ .+.++ +.+. |+.+
T Consensus 69 v~~~~vd~d~~~~-l~~~~~v~------~~Pt~~i~-~~G~~~~~~~G-----~~~~~--l~~~-l~~~ 121 (125)
T 1r26_A 69 VKFAKVDADNNSE-IVSKCRVL------QLPTFIIA-RSGKMLGHVIG-----ANPGM--LRQK-LRDI 121 (125)
T ss_dssp SEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHH--HHHH-HHHH
T ss_pred CEEEEEECCCCHH-HHHHcCCC------cccEEEEE-eCCeEEEEEeC-----CCHHH--HHHH-HHHH
Confidence 444433 344556 99999987 45765544 89998876653 23345 5555 5543
No 172
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=71.71 E-value=4.6 Score=25.01 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=31.5
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|-.+. |.+.. +++.||+. ..|+ |++.++|++.....+. +.++ +.+. |+.+
T Consensus 58 v~~~~vd~~~~~~-~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~--l~~~-l~~~ 110 (112)
T 1syr_A 58 MVFIKVDVDEVSE-VTEKENIT------SMPT-FKVYKNGSSVDTLLGA-----NDSA--LKQL-IEKY 110 (112)
T ss_dssp SEEEEEETTTTHH-HHHHTTCC------SSSE-EEEEETTEEEEEEESC-----CHHH--HHHH-HHTT
T ss_pred CEEEEEECCCCHH-HHHHcCCC------cccE-EEEEECCcEEEEEeCC-----CHHH--HHHH-HHHh
Confidence 4554443 33456 99999987 4565 5555799987765432 3455 5555 6543
No 173
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=71.03 E-value=3.5 Score=26.26 Aligned_cols=55 Identities=7% Similarity=-0.083 Sum_probs=34.6
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|--+- |.+.+ +++.|++. ..|+++++++.+.+..... ...++.++ +++. |+.+
T Consensus 71 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~~g~~~~~~~~---~G~~~~~~--l~~~-i~~~ 126 (127)
T 3h79_A 71 FVAARIDGEKYPD-VIERMRVS------GFPTMRYYTRIDKQEPFEY---SGQRYLSL--VDSF-VFQN 126 (127)
T ss_dssp EEEEEEETTTCHH-HHHHTTCC------SSSEEEEECSSCSSSCEEC---CSCCCHHH--HHHH-HHHH
T ss_pred eEEEEEEccccHh-HHHhcCCc------cCCEEEEEeCCCCCCceEe---cCCccHHH--HHHH-HHhc
Confidence 4444332 34556 99999998 5799999988776531121 12356677 7777 6654
No 174
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=73.35 E-value=0.88 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=24.1
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
.|.+.. +++.||+. ..|+++++ ++|++...+.+
T Consensus 59 ~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g 91 (106)
T 2yj7_A 59 VDENPN-TAAQYGIR------SIPTLLLF-KNGQVVDRLVG 91 (106)
Confidence 345566 88888886 46888888 78988775543
No 175
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=70.05 E-value=6 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=16.9
Q ss_pred ceEEEEECCCCCEEEEEEcc
Q psy11208 44 LRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~ 63 (116)
..-.|.||++|.|..+.+..
T Consensus 27 V~v~~~i~~~G~v~~~~v~~ 46 (90)
T 1u07_A 27 VKVKFDVTPDGRVDNVQILS 46 (90)
T ss_dssp EEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEe
Confidence 57789999999999988753
No 176
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=69.32 E-value=1.5 Score=27.57 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=25.5
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEE
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~ 57 (116)
++.|-.+. |.+.+ +++.||+. ..|++++++++|.+.
T Consensus 53 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~~~~~~~~ 89 (122)
T 3aps_A 53 KVRAGKVDCQAYPQ-TCQKAGIK------AYPSVKLYQYERAKK 89 (122)
T ss_dssp TCEEEEEETTTCHH-HHHHTTCC------SSSEEEEEEEEGGGT
T ss_pred CeEEEEEeCcCCHH-HHHHcCCC------ccceEEEEeCCCccc
Confidence 35554443 44556 99999987 579999998888753
No 177
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=69.20 E-value=11 Score=31.04 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=37.3
Q ss_pred ccceEEEE---eCCChHHHHHhCCCccCCCCcceEEEEECC---CCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVTAKVLS---SRNRREKEDRIGVLIEPAGIPLRGLFIIDP---KGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~fpLLS---D~~~~~vak~yGv~~~~~G~~~RatFIID~---dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.+.|--+. |.+.+ +++.|||. ..|+++++++ +|++..... .+++.++ +.+.|.+.+.
T Consensus 65 ~v~~~~VD~d~d~~~~-l~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~----g~~~~~~--L~~~l~~~l~ 127 (519)
T 3t58_A 65 ALNLAVLDCAEETNSA-VCREFNIA------GFPTVRFFQAFTKNGSGATLPG----AGANVQT--LRMRLIDALE 127 (519)
T ss_dssp TEEEEEEETTSGGGHH-HHHHTTCC------SBSEEEEECTTCCSCCCEEECC----SSCCHHH--HHHHHHHHHT
T ss_pred cEEEEEEECCccccHH-HHHHcCCc------ccCEEEEEcCcccCCCceeEec----CCCCHHH--HHHHHHHHHh
Confidence 35555544 44667 99999998 6799999997 777555432 2356666 7777233344
No 178
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.57 E-value=6.3 Score=24.83 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=34.4
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
++.|-.+ .|.+.. +++.|++. ..|+++++ ++|++. .+. ...+.++ +.+. |+.+.
T Consensus 55 ~v~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~-~~~----G~~~~~~--l~~~-l~~~~ 109 (126)
T 1x5e_A 55 EVNIAKVDVTEQPG-LSGRFIIN------ALPTIYHC-KDGEFR-RYQ----GPRTKKD--FINF-ISDKE 109 (126)
T ss_dssp TCEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEE-ECC----SCCCHHH--HHHH-HHTCG
T ss_pred CeEEEEEECcCCHH-HHHHcCCc------ccCEEEEE-eCCeEE-Eee----cCCCHHH--HHHH-HHHHh
Confidence 4555444 344556 99999987 57899999 789862 221 2234566 6677 66654
No 179
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=67.76 E-value=2.8 Score=25.72 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=29.7
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCEE--EEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR--QITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~--~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
.+.. +++.||+. ..|+++++ ++|++. ..+. ..++.++ +.+. |+.+
T Consensus 69 ~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~----g~~~~~~--l~~~-l~~~ 115 (120)
T 1mek_A 69 EESD-LAQQYGVR------GYPTIKFF-RNGDTASPKEYT----AGREADD--IVNW-LKKR 115 (120)
T ss_dssp TCCS-SHHHHTCC------SSSEEEEE-ESSCSSSCEECC----CCSSHHH--HHHH-HHTT
T ss_pred CCHH-HHHHCCCC------cccEEEEE-eCCCcCCccccc----CccCHHH--HHHH-HHhc
Confidence 3557 99999987 56899999 578754 3222 2345666 7777 6654
No 180
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=66.54 E-value=4.8 Score=28.18 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=33.5
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+. |.+.. +++.||+. ..|+++++ ++|++.....+ .++.++ +.+. |+.
T Consensus 147 v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G----~~~~~~--l~~~-i~~ 199 (210)
T 3apq_A 147 LRIGAVNCGDDRM-LCRMKGVN------SYPSLFIF-RSGMAAVKYNG----DRSKES--LVAF-AMQ 199 (210)
T ss_dssp BEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-CTTSCCEECCS----CCCHHH--HHHH-HHH
T ss_pred eEEEEEECCccHH-HHHHcCCC------cCCeEEEE-ECCCceeEecC----CCCHHH--HHHH-HHH
Confidence 4554443 44556 99999997 56888888 89998654432 234556 6666 554
No 181
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=65.84 E-value=10 Score=21.74 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=21.1
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
++.|-.+. |.+.+ +++.||+. ..|++++ +|++
T Consensus 33 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~---~G~~ 65 (85)
T 1nho_A 33 KIDVEKIDIMVDRE-KAIEYGLM------AVPAIAI---NGVV 65 (85)
T ss_dssp SCCEEEECTTTCGG-GGGGTCSS------CSSEEEE---TTTE
T ss_pred CeEEEEEECCCCHH-HHHhCCce------eeCEEEE---CCEE
Confidence 34544432 44556 88999987 4577776 7988
No 182
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.72 E-value=3.8 Score=28.32 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=28.9
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
+.|--+ .|.+.+ ++..|||. ..|+.+++ ++|+++...++.
T Consensus 68 v~~~KVdvDe~~~-la~~ygV~------siPTlilF-kdG~~v~~~vG~ 108 (137)
T 2qsi_A 68 LVAAEVAAEAERG-LMARFGVA------VCPSLAVV-QPERTLGVIAKI 108 (137)
T ss_dssp EEEEEECGGGHHH-HHHHHTCC------SSSEEEEE-ECCEEEEEEESC
T ss_pred cEEEEEECCCCHH-HHHHcCCc------cCCEEEEE-ECCEEEEEEeCC
Confidence 444333 345556 99999998 56888888 799999877654
No 183
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=65.63 E-value=3.4 Score=26.25 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=28.8
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECC---CCCEEEEEEc
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDP---KGVLRQITVN 62 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~---dG~I~~~~~~ 62 (116)
++.|-.+. |.+.. +++.|++. ..|++++++. +|++.....+
T Consensus 54 ~v~~~~vd~~~~~~-~~~~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G 98 (118)
T 2f51_A 54 DVTFIKVDVDKNGN-AADAYGVS------SIPALFFVKKEGNEIKTLDQFVG 98 (118)
T ss_dssp TSEEEEEETTTCHH-HHHHTTCC------SSSEEEEEEEETTEEEEEEEEES
T ss_pred CeEEEEEECCCCHH-HHHhcCCC------CCCEEEEEeCCCCcceEEEeecC
Confidence 44554442 44556 99999987 5689999975 4888876654
No 184
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=65.43 E-value=12 Score=26.45 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=31.9
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.|.+.. +++.|++. ..|+.+++ ++|++.....+. ...++ +.+. |+.+.
T Consensus 70 ~d~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~~l 117 (222)
T 3dxb_A 70 IDQNPG-TAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQ--LKEF-LDANL 117 (222)
T ss_dssp TTTCTT-TGGGGTCC------SBSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHHHS
T ss_pred CCCCHH-HHHHcCCC------cCCEEEEE-ECCeEEEEeccc----cChHH--HHHH-HHhhc
Confidence 355667 99999987 56777777 589988766543 23455 6666 66543
No 185
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=64.79 E-value=5.6 Score=32.81 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=32.6
Q ss_pred cccceEEEEeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEE
Q psy11208 14 GTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 14 ~~l~fpLLSD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~ 59 (116)
.++.+..+.|.+.. +++.|||. ..|+.++++++|++..+
T Consensus 183 ~~v~v~~v~~~~~~-l~~kfgV~------~~Pslvl~~~nGk~~~~ 221 (519)
T 3t58_A 183 HAVAVRRVLNTESD-LVNKFGVT------DFPSCYLLLRNGSVSRV 221 (519)
T ss_dssp TTEEEEEEETTCHH-HHHHHTCC------CSSEEEEEETTSCEEEC
T ss_pred CCeeEEEecCchHH-HHHHcCCC------CCCeEEEEeCCCceeec
Confidence 34667888888888 99999998 46899999999998765
No 186
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=64.26 E-value=17 Score=25.90 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=44.8
Q ss_pred ccceEEEE---eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEE-EEEEccCCCCCCccHHHHHHHHHhh-hCcCccc
Q psy11208 15 TVTAKVLS---SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR-QITVNVPRTGKTLFGYFTIRSVISS-FGLFSVC 89 (116)
Q Consensus 15 ~l~fpLLS---D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~-~~~~~~~~~~r~~~e~~iL~~~l~~-l~~~~~~ 89 (116)
++.|--+. |.+.. +++.||+. ..|+++++++.+++- .... ...+++.++ +.+. |.. +....
T Consensus 65 ~v~~~~vd~~~~~~~~-l~~~~~v~------~~Pt~~~~~~g~~~~~g~~~--~~~g~~~~~--l~~~-i~~~l~~~~-- 130 (244)
T 3q6o_A 65 ALYLAALDCAEETNSA-VCRDFNIP------GFPTVRFFXAFTXNGSGAVF--PVAGADVQT--LRER-LIDALESHH-- 130 (244)
T ss_dssp TEEEEEEETTSTTTHH-HHHHTTCC------SSSEEEEECTTCCSSSCEEC--CCTTCCHHH--HHHH-HHHHHHTCT--
T ss_pred cEEEEEEeCCchhhHH-HHHHcCCC------ccCEEEEEeCCCcCCCCeeE--ecCCCCHHH--HHHH-HHHHHHhcc--
Confidence 34554444 55677 99999997 579999999743321 0111 123356666 7776 443 33221
Q ss_pred cCCCCCCCCCccCC-hhhHHHHhh
Q psy11208 90 PANWKPDSPTIKPS-PAESKEYFN 112 (116)
Q Consensus 90 p~~w~~g~~~~~~~-~~~~~~~~~ 112 (116)
..|.+..+.+.+. ......+|.
T Consensus 131 -~~~p~~~p~l~~~~~~~l~~~~~ 153 (244)
T 3q6o_A 131 -DTWPPACPPLEPAXLEEIDGFFA 153 (244)
T ss_dssp -TSCCTTSCCCSCCCHHHHHTHHH
T ss_pred -ccCCCCCCCcccccHHHHHHHhh
Confidence 2444444444443 344444443
No 187
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=63.94 E-value=13 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=25.7
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
...-.|+||++|+|..+.+...+....+++ -++++ ++..+
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~ssg~~~ld~-aAl~a-v~~~~ 80 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDANPKRMFER-EAMQA-LKKWK 80 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSSSSSHH-HHHHH-HHHCC
T ss_pred EEEEEEEECCCCcEEEEEEEEcCCcHHHHH-HHHHH-HHhCC
Confidence 357889999999999888754322223333 25666 66643
No 188
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.64 E-value=6.6 Score=25.09 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+.. +++.||+. ..|+++++ ++|++ ..+. ..++.++ +.+. |+.+.
T Consensus 80 ~~~-~~~~~~v~------~~Pt~~~~-~~G~~-~~~~----g~~~~~~--l~~~-l~~~~ 123 (140)
T 2dj1_A 80 ASM-LASKFDVS------GYPTIKIL-KKGQA-VDYD----GSRTQEE--IVAK-VREVS 123 (140)
T ss_dssp CHH-HHHHTTCC------SSSEEEEE-ETTEE-EECC----SCCCHHH--HHHH-HHHHH
T ss_pred cHH-HHHHCCCC------ccCeEEEE-ECCcE-EEcC----CCCCHHH--HHHH-HHHhc
Confidence 456 99999987 56899999 68873 2221 2345566 7777 66543
No 189
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=63.62 E-value=9.8 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=32.2
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|-.+ .|.+.. +++.||+. ..|+.+++ ++|++.....+. ...++ +.+. |+.
T Consensus 63 ~~~~~v~~~~~~~-~~~~~~i~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~--l~~~-l~~ 115 (121)
T 2i1u_A 63 LTVAKLDVDTNPE-TARNFQVV------SIPTLILF-KDGQPVKRIVGA----KGKAA--LLRE-LSD 115 (121)
T ss_dssp CEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHH--HHHH-TCS
T ss_pred eEEEEEECCCCHH-HHHhcCCC------cCCEEEEE-ECCEEEEEecCC----CCHHH--HHHH-HHH
Confidence 444443 344566 99999987 45777666 599987765433 23445 5555 544
No 190
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=59.71 E-value=6.3 Score=26.15 Aligned_cols=32 Identities=3% Similarity=-0.080 Sum_probs=23.1
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
|.+.. +++.||+. ..|++++++ +|++......
T Consensus 64 d~~~~-~~~~~~i~------~~Pt~~~~~-~G~~v~~~~g 95 (142)
T 1qgv_A 64 TEVPD-FNKMYELY------DPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_dssp TTCCT-TTTSSCSC------SSCEEEEEE-TTEEEEEECC
T ss_pred ccCHH-HHHHcCCC------CCCEEEEEE-CCcEEEEecC
Confidence 45566 88888887 568888884 7888765443
No 191
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=59.11 E-value=27 Score=24.08 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=32.5
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
++.|-.+ .|.+.. +++.||+. ..|+++++ ++|.+...+.+. +..++ +.+. |+.
T Consensus 170 ~v~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~--l~~~-l~~ 223 (226)
T 1a8l_A 170 KILGDMVEAIEYPE-WADQYNVM------AVPKIVIQ-VNGEDRVEFEGA----YPEKM--FLEK-LLS 223 (226)
T ss_dssp CEEEEEEEGGGCHH-HHHHTTCC------SSCEEEEE-ETTEEEEEEESC----CCHHH--HHHH-HHH
T ss_pred cEEEEEEEcccCHH-HHHhCCCc------ccCeEEEE-eCCceeEEEcCC----CCHHH--HHHH-HHH
Confidence 4555444 344556 99999997 46776655 689887766543 23345 5555 443
No 192
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=58.60 E-value=8.2 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=20.3
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
++.|-.+. |.+.+ +++.||+. ..|++++ +|++
T Consensus 34 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 34 AVEVEYINVMENPQ-KAMEYGIM------AVPTIVI---NGDV 66 (85)
T ss_dssp SEEEEEEESSSSCC-TTTSTTTC------CSSEEEE---TTEE
T ss_pred ceEEEEEECCCCHH-HHHHCCCc------ccCEEEE---CCEE
Confidence 34443332 44566 88889887 4576666 7887
No 193
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=57.11 E-value=8.7 Score=27.87 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=27.7
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+.|--+ .|.+.. +++.|||. ..|+++++ ++|++...+.+
T Consensus 59 ~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g 98 (287)
T 3qou_A 59 FILAKLDCDAEQM-IAAQFGLR------AIPTVYLF-QNGQPVDGFQG 98 (287)
T ss_dssp SEEEEEETTTCHH-HHHTTTCC------SSSEEEEE-ETTEEEEEEES
T ss_pred eEEEEEeCccCHH-HHHHcCCC------CCCeEEEE-ECCEEEEEeeC
Confidence 444433 245567 99999997 56888888 68998876654
No 194
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.05 E-value=4.7 Score=25.57 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=29.6
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
+.. +++.|++. ..|+++++++.|++..+... ...++.++ +.+. |+.+.
T Consensus 70 ~~~-~~~~~~v~------~~Pt~~~~~~g~~~~~~~~~--gg~~~~~~--l~~~-l~~~~ 117 (133)
T 2dj3_A 70 NDI-TNDQYKVE------GFPTIYFAPSGDKKNPIKFE--GGNRDLEH--LSKF-IDEHA 117 (133)
T ss_dssp SCC-CCSSCCCS------SSSEEEEECTTCTTSCEECC--SSCCSTTH--HHHH-HHHHS
T ss_pred CHH-HHhhcCCC------cCCEEEEEeCCCcccceEec--CCCcCHHH--HHHH-HHHhc
Confidence 345 66677776 57999999988776543221 11245666 7777 66554
No 195
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=53.47 E-value=7.1 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=26.2
Q ss_pred EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 22 SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 22 SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
.|.+.+ ++..|||. ..|+.+++ ++|+++...++.
T Consensus 77 vDe~~~-lA~~ygV~------sIPTlilF-k~G~~v~~~~G~ 110 (140)
T 2qgv_A 77 LEQSEA-IGDRFGAF------RFPATLVF-TGGNYRGVLNGI 110 (140)
T ss_dssp HHHHHH-HHHHHTCC------SSSEEEEE-ETTEEEEEEESC
T ss_pred CCCCHH-HHHHcCCc------cCCEEEEE-ECCEEEEEEecC
Confidence 355567 99999998 56877777 799998877654
No 196
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=50.80 E-value=14 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=19.9
Q ss_pred hHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 27 REKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 27 ~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
. +++.||+. ..|++++++ +|+++...
T Consensus 78 ~-~~~~~~i~------~~Pt~~~~~-~G~~~~~~ 103 (118)
T 1zma_A 78 A-FRSRYGIP------TVPGFVHIT-DGQINVRC 103 (118)
T ss_dssp H-HHHHHTCC------SSCEEEEEE-TTEEEEEC
T ss_pred H-HHHHcCCC------CCCeEEEEE-CCEEEEEe
Confidence 5 88899987 568888885 89887543
No 197
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.93 E-value=28 Score=22.13 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=29.1
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccC
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~ 64 (116)
++.|--+. |.+.. +++.|++.....-...|+++++ ++|++........
T Consensus 59 ~v~~~~vd~~~~~~-~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~ 107 (137)
T 2dj0_A 59 GLNFGKVDVGRYTD-VSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQID 107 (137)
T ss_dssp SCEEEECCTTTCHH-HHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBC
T ss_pred CeEEEEEeCccCHH-HHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcC
Confidence 34444332 34456 9999998522111246888888 6899987665543
No 198
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=49.43 E-value=5.4 Score=26.76 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=10.0
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|+||++|+
T Consensus 92 nViPa~W~~Gq 102 (108)
T 2jnz_A 92 EVIPTAFSIGK 102 (108)
T ss_dssp EEECSSCCTTC
T ss_pred eEECCCCCCCC
Confidence 78999999986
No 199
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=48.68 E-value=8.2 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=26.0
Q ss_pred cceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 16 VTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 16 l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
+.|-.++ |.+.. +++.|+.. .....|+++++|++|++...+
T Consensus 86 v~~~~v~~d~~~~-~~~~~~~~---~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 86 IELAIISKGRAED-DLRQRLAL---ERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp EEEEEECHHHHHH-HTTTTTTC---SSCCSSEEEEECTTCCEEEEE
T ss_pred cEEEEEECCCCHH-HHHHHHHc---CCCCcCeEEEECCCCCEEEEE
Confidence 4444443 33344 67777621 113679999999999997765
No 200
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=48.61 E-value=5.8 Score=26.13 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=9.9
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|+||++|+
T Consensus 81 nViPa~W~~G~ 91 (100)
T 3ft1_A 81 EVIPTAFSIGK 91 (100)
T ss_dssp EEECTTCCTTC
T ss_pred eEeCCCCCCCc
Confidence 78899999996
No 201
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=47.90 E-value=30 Score=25.86 Aligned_cols=38 Identities=8% Similarity=0.217 Sum_probs=24.2
Q ss_pred ceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 44 LRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
..-.|.||++|.|..+.+...+....+++ -+|++ ++.+
T Consensus 166 V~V~f~Id~dG~V~~v~V~~SSG~~~LD~-aAl~A-Vr~~ 203 (229)
T 2grx_C 166 VKVKFDVTPDGRVDNVQILSAKPANMFER-EVKNA-MRRW 203 (229)
T ss_dssp ECEEEECCTTSCCEEEEECCCSSSTTSHH-HHHHH-TTSC
T ss_pred EEEEEEECCCCCEEEEEEEecCCcHHHHH-HHHHH-HHHh
Confidence 57899999999999988753322222333 24555 5544
No 202
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=46.09 E-value=6.9 Score=25.53 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=9.8
Q ss_pred ccccCCCCCCC
Q psy11208 87 SVCPANWKPDS 97 (116)
Q Consensus 87 ~~~p~~w~~g~ 97 (116)
++.|++|++|+
T Consensus 80 nViP~~W~~G~ 90 (96)
T 1bmw_A 80 DVVPEKYTIGA 90 (96)
T ss_dssp SCSCSSCCSSS
T ss_pred eEeCCCCCCCC
Confidence 68899999986
No 203
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=45.23 E-value=67 Score=22.01 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=32.3
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
+.|--+ .|.+.. +++.||+. ..|++++++ +|.+.. + ...++.++ +.+. ++.+
T Consensus 68 ~~~~~vd~~~~~~-l~~~~~v~------~~Pt~~~~~-~g~~~~-~----~g~~~~~~--l~~~-i~~~ 120 (241)
T 3idv_A 68 IPVAKIDATSASV-LASRFDVS------GYPTIKILK-KGQAVD-Y----EGSRTQEE--IVAK-VREV 120 (241)
T ss_dssp CCEEEEETTTCHH-HHHHTTCC------SSSEEEEEE-TTEEEE-C----CSCSCHHH--HHHH-HHHH
T ss_pred eEEEEEeccCCHH-HHHhcCCC------cCCEEEEEc-CCCccc-c----cCcccHHH--HHHH-Hhhc
Confidence 444433 345567 99999998 568888886 565542 1 23345666 6666 5554
No 204
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=44.36 E-value=19 Score=20.29 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.1
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCCEEE
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQ 58 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~ 58 (116)
+.+ +++.||+. ..|++++ +|+++.
T Consensus 39 ~~~-~~~~~~v~------~~Pt~~~---~G~~~~ 62 (77)
T 1ilo_A 39 EMD-QILEAGLT------ALPGLAV---DGELKI 62 (77)
T ss_dssp SHH-HHHHHTCS------SSSCEEE---TTEEEE
T ss_pred CHH-HHHHCCCC------cCCEEEE---CCEEEE
Confidence 556 99999997 4576666 788765
No 205
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=42.29 E-value=34 Score=22.94 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 41 GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 41 G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
|....-.|-||++|.|..+.+...+....+++ -++++ |+..+
T Consensus 51 ~~~~~V~v~l~~dG~v~~v~v~~SSG~~~lD~-AAl~A-V~ra~ 92 (129)
T 1lr0_A 51 GMSVEVLIEMLPDGTITNASVSRSSGDKPFDS-SAVAA-VRNVG 92 (129)
T ss_dssp TCCEEEEEEECTTSBEEEEEEEECCSCHHHHH-HHHHH-HHHHC
T ss_pred CCEEEEEEEECCCCCEEEEEEeeCCCCHHHHH-HHHHH-HHHhC
Confidence 44567789999999999987654332223442 25566 55554
No 206
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=42.29 E-value=17 Score=19.60 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=11.8
Q ss_pred EEEEECCCCCEEEE
Q psy11208 46 GLFIIDPKGVLRQI 59 (116)
Q Consensus 46 atFIID~dG~I~~~ 59 (116)
+.+++|.+|+|.++
T Consensus 4 ~i~~~d~~g~i~~~ 17 (96)
T 3a0s_A 4 AIITLSKDGRITEW 17 (96)
T ss_dssp EEEEEETTSBEEEE
T ss_pred eEEEEcCCCCEeeh
Confidence 57899999999874
No 207
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=41.47 E-value=17 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=12.8
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.+++|++|+|.++
T Consensus 16 ~gviv~D~~g~I~~~ 30 (121)
T 4hi4_A 16 ANVMIADNDLNIIYM 30 (121)
T ss_dssp SEEEEEETTCBEEEE
T ss_pred ccEEEEcCCCeEEEe
Confidence 468999999999874
No 208
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=41.31 E-value=5.2 Score=25.11 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=27.6
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
|.+.. +++.||+. ..|+ |++.++|++.....+ .+.++ +.+. |+.+
T Consensus 76 ~~~~~-~~~~~~v~------~~Pt-~~~~~~g~~~~~~~g-----~~~~~--l~~~-l~~~ 120 (130)
T 1wmj_A 76 DELKE-VAEKYNVE------AMPT-FLFIKDGAEADKVVG-----ARKDD--LQNT-IVKH 120 (130)
T ss_dssp TTSGG-GHHHHTCC------SSCC-CCBCTTTTCCBCCCT-----TCTTT--HHHH-HHHH
T ss_pred cchHH-HHHHcCCC------ccce-EEEEeCCeEEEEEeC-----CCHHH--HHHH-HHHH
Confidence 44567 99999987 3465 455589988654432 23455 5555 5544
No 209
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.00 E-value=21 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.6
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
-+.+++|.+|+|.++
T Consensus 18 ~~i~~~D~~g~I~~~ 32 (115)
T 3b33_A 18 TATLILDDGLAIRYA 32 (115)
T ss_dssp SEEEEECTTCBEEEE
T ss_pred ceEEEECCCCcEEEE
Confidence 468999999999874
No 210
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.06 E-value=34 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred cceEEEEECCCCCEEEEEEccCCCCC---CccHHHHHHHHHhhhC
Q psy11208 43 PLRGLFIIDPKGVLRQITVNVPRTGK---TLFGYFTIRSVISSFG 84 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~~~~~r---~~~e~~iL~~~l~~l~ 84 (116)
..|+.++++ +|+++.........+. ..++ +.+. |+...
T Consensus 80 ~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~--l~~~-l~~~~ 120 (135)
T 2dbc_A 80 CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEE--LEWK-LSEVG 120 (135)
T ss_dssp CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHH--HHHH-HHHHT
T ss_pred CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHH--HHHH-HHHcC
Confidence 568888886 8999887776543321 3444 5555 77665
No 211
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=38.75 E-value=24 Score=22.26 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=20.2
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCC
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKG 54 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG 54 (116)
|.+.. +++.|++. ..|++++++..+
T Consensus 79 d~~~~-~~~~~~i~------~~Pt~~~~~~~~ 103 (123)
T 1wou_A 79 DPNND-FRKNLKVT------AVPTLLKYGTPQ 103 (123)
T ss_dssp CTTCH-HHHHHCCC------SSSEEEETTSSC
T ss_pred chhHH-HHHHCCCC------eeCEEEEEcCCc
Confidence 66778 99999997 578999998733
No 212
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=38.11 E-value=62 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.8
Q ss_pred cceEEEEECCCCCEEEEEE
Q psy11208 43 PLRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~ 61 (116)
...+.++|=|||-|.+...
T Consensus 497 ~~~~~~lvRPD~~va~r~~ 515 (535)
T 3ihg_A 497 GKAGASLVRPDGIVAWRTD 515 (535)
T ss_dssp TTTCEEEECTTSBEEEEES
T ss_pred CCCceEeeCCCceeEEecC
Confidence 3567899999999998774
No 213
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=35.73 E-value=46 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.9
Q ss_pred ceEEEEECCCCCEEEEEEccCCCC
Q psy11208 44 LRGLFIIDPKGVLRQITVNVPRTG 67 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~~~~~ 67 (116)
.|..|+.||+|.+..+.... +.+
T Consensus 110 ~~~~~~~DPdG~~iel~~~~-~~~ 132 (138)
T 2a4x_A 110 QRYAIVKDPDGNVVDLFAPL-PLE 132 (138)
T ss_dssp EEEEEEECTTCCEEEEEEEC-TTC
T ss_pred cEEEEEECCCCCEEEEEeCC-ccc
Confidence 58899999999998877554 444
No 214
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=34.88 E-value=30 Score=19.93 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=12.2
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.|++|++|+|.++
T Consensus 24 ~~i~~~d~~g~i~~~ 38 (118)
T 3olo_A 24 EASFCLGDNWQFLYV 38 (118)
T ss_dssp SEEEEECTTSBEEEE
T ss_pred ceEEEECCCCcEEEE
Confidence 357899999998874
No 215
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=34.43 E-value=30 Score=20.89 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.5
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.+++|++|+|.++
T Consensus 23 ~~i~~~D~~g~i~~~ 37 (118)
T 3fg8_A 23 LGFMALDEDLRIIYV 37 (118)
T ss_dssp CEEEEECTTCBEEEE
T ss_pred ceEEEECCCCeEEEE
Confidence 357899999999875
No 216
>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0
Probab=33.23 E-value=62 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.9
Q ss_pred cceEEEEECCCCCEEEEEEcc
Q psy11208 43 PLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 43 ~~RatFIID~dG~I~~~~~~~ 63 (116)
..|..++.||+|.+..+....
T Consensus 105 g~~~~~~~DPdG~~iel~~~~ 125 (134)
T 3fcd_A 105 GQREFQVRMPDGDWLNFTAPL 125 (134)
T ss_dssp SEEEEEEECTTSCEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEEcc
Confidence 358999999999988776544
No 217
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=32.56 E-value=43 Score=19.29 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=17.0
Q ss_pred ChHHHHHhCCCccCCCCcceEEEEECCCCCEEEE
Q psy11208 26 RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQI 59 (116)
Q Consensus 26 ~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~ 59 (116)
.+ +++.||+. ..|++|+ +|++.++
T Consensus 45 ~~-~~~~~gv~------~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 45 IA-EAEKAGVK------SVPALVI---DGAAFHI 68 (80)
T ss_dssp HH-HHHHHTCC------EEEEEEE---TTEEEEE
T ss_pred HH-HHHHcCCC------cCCEEEE---CCEEEEe
Confidence 45 88999987 5677665 6877653
No 218
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=32.55 E-value=34 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=12.2
Q ss_pred EEEEECCCCCEEEE
Q psy11208 46 GLFIIDPKGVLRQI 59 (116)
Q Consensus 46 atFIID~dG~I~~~ 59 (116)
+.+++|.+|+|.++
T Consensus 17 ~i~~~d~~g~i~~~ 30 (120)
T 2gj3_A 17 AISITDLKANILYA 30 (120)
T ss_dssp EEEEECTTCBEEEE
T ss_pred eEEEECCCCCEEee
Confidence 67999999999875
No 219
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=32.47 E-value=28 Score=20.35 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=12.4
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.+++|++|+|.++
T Consensus 30 ~~i~~~d~~g~i~~~ 44 (125)
T 3fc7_A 30 DGIVHLTTNGTILSV 44 (125)
T ss_dssp CEEEEEETTSBEEEE
T ss_pred CeEEEEcCCCeEEEE
Confidence 468999999999874
No 220
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=31.98 E-value=30 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.7
Q ss_pred eEEEEECCC-CCEEEE
Q psy11208 45 RGLFIIDPK-GVLRQI 59 (116)
Q Consensus 45 RatFIID~d-G~I~~~ 59 (116)
=+.+++|++ |+|.++
T Consensus 9 ~~i~~~d~~~g~I~~~ 24 (114)
T 1ll8_A 9 KAIFTVDAKTTEILVA 24 (114)
T ss_dssp CEEEEEETTTCBEEEE
T ss_pred ceEEEEECCCCeEEEe
Confidence 368999999 999875
No 221
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=31.29 E-value=82 Score=22.54 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=30.2
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++.|..+- |.+.. +++.||+. ..|++|+ +|+++ +.+ .++.++ +++. |+..
T Consensus 174 ~v~~~~vd~~~~~~-~~~~~~V~------~vPt~~i---~G~~~--~~G----~~~~~~--l~~~-l~~~ 224 (243)
T 2hls_A 174 VILSEAVEAYENPD-IADKYGVM------SVPSIAI---NGYLV--FVG----VPYEED--FLDY-VKSA 224 (243)
T ss_dssp CEEEEEEETTTCHH-HHHHTTCC------SSSEEEE---TTEEE--EES----CCCHHH--HHHH-HHHH
T ss_pred cEEEEEEECccCHH-HHHHcCCe------eeCeEEE---CCEEE--EeC----CCCHHH--HHHH-HHHH
Confidence 45554442 23445 89999987 5688877 68765 222 234566 7776 5543
No 222
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=30.90 E-value=29 Score=22.28 Aligned_cols=16 Identities=13% Similarity=0.578 Sum_probs=13.1
Q ss_pred eEEEEECCCCCEEEEE
Q psy11208 45 RGLFIIDPKGVLRQIT 60 (116)
Q Consensus 45 RatFIID~dG~I~~~~ 60 (116)
=+.+++|.+|+|.++-
T Consensus 18 d~i~~~D~~g~I~~~N 33 (129)
T 3mfx_A 18 EAMILVNANGFIRSCN 33 (129)
T ss_dssp SEEEEEETTSBEEEEC
T ss_pred ceEEEECCCCEEEeEh
Confidence 4689999999998743
No 223
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=30.84 E-value=31 Score=20.53 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=11.7
Q ss_pred EEEEECCCCCEEEE
Q psy11208 46 GLFIIDPKGVLRQI 59 (116)
Q Consensus 46 atFIID~dG~I~~~ 59 (116)
+.+++|++|+|.++
T Consensus 5 ~i~~~d~~g~i~~~ 18 (119)
T 2vv6_A 5 AMIVIDGHGIIQLF 18 (119)
T ss_dssp EEEEEETTSBEEEE
T ss_pred eEEEECCCCeEEEE
Confidence 57899999999864
No 224
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=28.74 E-value=68 Score=21.16 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=22.3
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEc
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~ 62 (116)
+|..|||.. ..|+.+++ ++|++++....
T Consensus 72 IA~~~~V~h-----~sPq~il~-k~G~~v~~~SH 99 (112)
T 3iv4_A 72 IAKKTNVKH-----ESPQAFYF-VNGEMVWNRDH 99 (112)
T ss_dssp HHHHHTCCC-----CSSEEEEE-ETTEEEEEEEG
T ss_pred HHHHhCCcc-----CCCeEEEE-ECCEEEEEeec
Confidence 799999982 36888888 79999987654
No 225
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=28.60 E-value=22 Score=25.22 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=20.2
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEE
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~ 60 (116)
|...+ ++..|||. ..|+.+++ .+|+...+.
T Consensus 82 De~~e-~a~~y~V~------siPT~~fF-k~G~~v~vd 111 (160)
T 2av4_A 82 TEVPD-FNTMYELY------DPVSVMFF-YRNKHMMID 111 (160)
T ss_dssp TTCCT-TTTTTTCC------SSEEEEEE-ETTEEEEEE
T ss_pred CCCHH-HHHHcCCC------CCCEEEEE-ECCEEEEEe
Confidence 45566 88888887 56777556 578776544
No 226
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=28.55 E-value=42 Score=20.13 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=11.6
Q ss_pred EEEEECCCCCEEEE
Q psy11208 46 GLFIIDPKGVLRQI 59 (116)
Q Consensus 46 atFIID~dG~I~~~ 59 (116)
+.|++|++|+|.++
T Consensus 23 ~i~~~d~~g~i~~v 36 (117)
T 2r78_A 23 GIFIMDAEGHYLDV 36 (117)
T ss_dssp EEEEECTTSBEEEE
T ss_pred eEEEECCCCCEEEe
Confidence 57899999998763
No 227
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=28.53 E-value=26 Score=23.22 Aligned_cols=28 Identities=11% Similarity=-0.151 Sum_probs=20.7
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEcc
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~ 63 (116)
++..|+|. ..|+.++++ +|+.+....+-
T Consensus 68 la~~~~V~------g~PT~i~f~-~G~ev~Ri~G~ 95 (116)
T 3dml_A 68 LELARPVT------FTPTFVLMA-GDVESGRLEGY 95 (116)
T ss_dssp CBCSSCCC------SSSEEEEEE-TTEEEEEEECC
T ss_pred HHHHCCCC------CCCEEEEEE-CCEEEeeecCC
Confidence 66777765 568999998 99888766543
No 228
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=28.25 E-value=85 Score=19.41 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.1
Q ss_pred eEEEEECCCCCEEEEEEc
Q psy11208 45 RGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~ 62 (116)
|..|+.||+|.+..+...
T Consensus 110 ~~~~~~DPdG~~iel~~~ 127 (136)
T 2rk0_A 110 WILAFRDADNIALEAMLG 127 (136)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEEc
Confidence 889999999998876654
No 229
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=27.82 E-value=34 Score=22.82 Aligned_cols=18 Identities=0% Similarity=0.124 Sum_probs=14.5
Q ss_pred eEEEEECCCCCEEEEEEc
Q psy11208 45 RGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 45 RatFIID~dG~I~~~~~~ 62 (116)
=..+++|++|+|++.-..
T Consensus 30 ~gI~~vD~~g~I~~~N~a 47 (151)
T 2qkp_A 30 LEITFVNKDDIFQYYNDS 47 (151)
T ss_dssp SEEEEEETTSBEEEECCC
T ss_pred CceEEEcCCCeEEEEeCC
Confidence 358999999999986544
No 230
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=27.42 E-value=75 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.2
Q ss_pred ceEEEEECCCCCEEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~ 61 (116)
.|+.|+-||||.+.-+..
T Consensus 115 ~~~~~f~DPDGn~iEi~~ 132 (149)
T 4gym_A 115 MYGRSFHDLDGHLWEVMW 132 (149)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEE
Confidence 589999999999877654
No 231
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=27.28 E-value=68 Score=20.00 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=16.0
Q ss_pred ceEEEEECCCCCEEEEEEcc
Q psy11208 44 LRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~ 63 (116)
.+..|+.||+|.+..+...+
T Consensus 133 g~~~~~~DPdG~~iel~~~~ 152 (156)
T 3kol_A 133 GRGVYFYDPDGFMIEIRCDP 152 (156)
T ss_dssp CEEEEEECTTSCEEEEEECC
T ss_pred ccEEEEECCCCCEEEEEecC
Confidence 36899999999988776543
No 232
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=26.72 E-value=49 Score=19.51 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.7
Q ss_pred EEEEECCCCCEEEE
Q psy11208 46 GLFIIDPKGVLRQI 59 (116)
Q Consensus 46 atFIID~dG~I~~~ 59 (116)
+.+++|++|.|.++
T Consensus 29 ~i~~~d~~g~i~~~ 42 (126)
T 3bwl_A 29 MIDVLDADGTICEV 42 (126)
T ss_dssp EEEEECTTCBEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 47899999998874
No 233
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=26.10 E-value=1e+02 Score=20.06 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhhC
Q psy11208 29 KEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFG 84 (116)
Q Consensus 29 vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l~ 84 (116)
.++.+||. |. | ||||| |+ |+. .... -..+++ +++. |+.|-
T Consensus 142 ~a~~~gv~----gT--P-tfiIN--Gk--y~v-~~~~-~~s~e~--~~~~-i~~Ll 181 (184)
T 4dvc_A 142 QFQDSGLT----GV--P-AVVVN--NR--YLV-QGQS-AKSLDE--YFDL-VNYLL 181 (184)
T ss_dssp HHHHHTCC----SS--S-EEEET--TT--EEE-CGGG-CSSHHH--HHHH-HHHHT
T ss_pred HHHHcCCC----cC--C-EEEEC--CE--Eee-CCcC-CCCHHH--HHHH-HHHHH
Confidence 56667765 44 4 68885 65 222 2222 235677 7777 77664
No 234
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=25.78 E-value=42 Score=20.30 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.3
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.+++|++|+|.++
T Consensus 27 d~i~~~d~~g~i~~~ 41 (130)
T 1d06_A 27 DATVVSATDGTIVSF 41 (130)
T ss_dssp SEEEEEETTSBEEEE
T ss_pred CeEEEECCCCeEEEE
Confidence 367899999999863
No 235
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=25.71 E-value=52 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.4
Q ss_pred CCChHHHHHhCCCccCCCCcceEEEEECCCCCE
Q psy11208 24 RNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVL 56 (116)
Q Consensus 24 ~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I 56 (116)
.+.+ +++.||+. ..|+ |+| +|++
T Consensus 54 ~~~~-l~~~~~V~------~~PT-~~i--~G~~ 76 (106)
T 3kp8_A 54 PQAQ-ECTEAGIT------SYPT-WII--NGRT 76 (106)
T ss_dssp CCCH-HHHHTTCC------SSSE-EEE--TTEE
T ss_pred hhHH-HHHHcCCe------EeCE-EEE--CCEE
Confidence 4567 99999998 4576 445 6763
No 236
>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}
Probab=25.33 E-value=79 Score=19.61 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.8
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.|..++.||+|.+..+...
T Consensus 109 ~~~~~~~DPdG~~iel~~~ 127 (141)
T 2qnt_A 109 QRVFRFYDPDGHAIEVGES 127 (141)
T ss_dssp CEEEEEECTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEec
Confidence 5889999999999876643
No 237
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=25.07 E-value=60 Score=24.77 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=33.5
Q ss_pred cceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhh
Q psy11208 16 VTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISS 82 (116)
Q Consensus 16 l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~ 82 (116)
+.|--+ +|.+.. +++.|||. ..|+.+++ ++|.+....+. ..+..++ +++. ++.
T Consensus 61 v~~~~Vd~~~~~~-l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~---G~~~~~~--l~~~-i~~ 114 (382)
T 2r2j_A 61 VVFARVDCDQHSD-IAQRYRIS------KYPTLKLF-RNGMMMKREYR---GQRSVKA--LADY-IRQ 114 (382)
T ss_dssp EEEEEEETTTCHH-HHHHTTCC------EESEEEEE-ETTEEEEEECC---SCCSHHH--HHHH-HHH
T ss_pred eEEEEEECCccHH-HHHhcCCC------cCCEEEEE-eCCcEeeeeec---CcchHHH--HHHH-HHH
Confidence 444443 345567 99999998 56877776 58887653221 2355667 7777 544
No 238
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=24.78 E-value=49 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=12.3
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
-+.+++|.+|+|.++
T Consensus 14 ~~i~~~d~~g~i~~~ 28 (114)
T 3luq_A 14 AALAMFDREMRYLAV 28 (114)
T ss_dssp SEEEEEETTCBEEEE
T ss_pred ceEEEEcCCcEEEEE
Confidence 357899999999874
No 239
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=24.30 E-value=44 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.8
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+.+|+|++|+|++.
T Consensus 33 ~gi~v~D~~g~I~~~ 47 (152)
T 3mxq_A 33 FALCIVRNDYVIVKV 47 (152)
T ss_dssp CEEEEEETTSBEEEE
T ss_pred CCEEEEcCCCEEEEE
Confidence 368999999999975
No 240
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=24.18 E-value=39 Score=21.33 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=11.8
Q ss_pred EEEECCCCCEEEEE
Q psy11208 47 LFIIDPKGVLRQIT 60 (116)
Q Consensus 47 tFIID~dG~I~~~~ 60 (116)
..|||++|+|.+-.
T Consensus 51 ItiiD~~G~Vl~dS 64 (122)
T 3cwf_A 51 ASVIDTDGKVLYGS 64 (122)
T ss_dssp EEEEETTSCEEEET
T ss_pred EEEECCCCcEEEeC
Confidence 78899999999844
No 241
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=24.07 E-value=52 Score=18.33 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.4
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
-..+++|++|+|.+.
T Consensus 18 ~~i~~~d~~~~i~~~ 32 (124)
T 3lyx_A 18 DAIVVTDLQGFIIDW 32 (124)
T ss_dssp SEEEEEETTCBEEEE
T ss_pred ceEEEECCCCcEeeh
Confidence 468999999999874
No 242
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=24.03 E-value=64 Score=24.16 Aligned_cols=53 Identities=4% Similarity=0.018 Sum_probs=34.0
Q ss_pred ccceEEE-EeCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAKVL-SSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fpLL-SD~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++.|.-+ +|.+.+ +++.|||. ..|+++++ ++|++. .+ ...+..++ +.+. ++..
T Consensus 67 ~v~~~~Vd~~~~~~-l~~~~~v~------~~Pt~~~~-~~g~~~-~~----~G~~~~~~--l~~~-i~~~ 120 (350)
T 1sji_A 67 DIGFVMVDAKKEAK-LAKKLGFD------EEGSLYVL-KGDRTI-EF----DGEFAADV--LVEF-LLDL 120 (350)
T ss_dssp SEEEEEEETTTTHH-HHHHHTCC------STTEEEEE-ETTEEE-EE----CSCCCHHH--HHHH-HHTT
T ss_pred CcEEEEEeCCCCHH-HHHhcCCC------ccceEEEE-ECCcEE-Ee----cCCCCHHH--HHHH-HHHh
Confidence 3455433 455667 99999998 56899999 678742 22 12356677 7777 5543
No 243
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=24.01 E-value=43 Score=23.70 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=13.0
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
=+++++|++|+|.|+
T Consensus 33 ~~vii~D~~g~I~~~ 47 (233)
T 3vol_A 33 ANVMIADNDLNIIYM 47 (233)
T ss_dssp SEEEEEETTSBEEEE
T ss_pred CcEEEECCCCcEEEe
Confidence 478999999999874
No 244
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=23.78 E-value=63 Score=22.82 Aligned_cols=62 Identities=5% Similarity=-0.084 Sum_probs=34.2
Q ss_pred eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEE----------EEEEccCC--CCCCccHHHHHHHHHhhhCcC---c
Q psy11208 23 SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR----------QITVNVPR--TGKTLFGYFTIRSVISSFGLF---S 87 (116)
Q Consensus 23 D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~----------~~~~~~~~--~~r~~~e~~iL~~~l~~l~~~---~ 87 (116)
|.+.+ ++..|||. ..|+.+++-+.+... ...+ ... .++.++. +.+. |..-... .
T Consensus 90 d~~~~-la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~y-~~~~~~~~~ae~--la~f-i~~~t~~~i~I 158 (178)
T 3ga4_A 90 NEVPQ-LVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQY-SLVPENAENTLQ--FGDF-LAKILNISITV 158 (178)
T ss_dssp TTCHH-HHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEEE-CCCGGGTTCHHH--HHHH-HHHHHTCCCCC
T ss_pred ccCHH-HHHHcCCC------CCCEEEEEcCCCCCCccccccccCCccee-ecccCCCcCHHH--HHHH-HHHhcCCCccc
Confidence 34456 99999998 678888886554332 1111 122 2566667 7777 6542211 4
Q ss_pred cccCCCCC
Q psy11208 88 VCPANWKP 95 (116)
Q Consensus 88 ~~p~~w~~ 95 (116)
.-|.||..
T Consensus 159 ~rp~ny~~ 166 (178)
T 3ga4_A 159 PQAFNVQE 166 (178)
T ss_dssp CCSCC---
T ss_pred cCCCChHH
Confidence 44666653
No 245
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=23.56 E-value=82 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.8
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.|..|+.||+|.+..+...
T Consensus 114 ~~~~~~~DPdG~~iel~~~ 132 (141)
T 2rbb_A 114 WYQAVLLDPERNVFRINNV 132 (141)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEEc
Confidence 6889999999998876643
No 246
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=23.47 E-value=81 Score=19.95 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=15.5
Q ss_pred ceEEEEECCCCCEEEEEEcc
Q psy11208 44 LRGLFIIDPKGVLRQITVNV 63 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~ 63 (116)
.|..|+.||+|.+.-+....
T Consensus 125 ~~~~~~~DPdG~~iEl~~~~ 144 (152)
T 3huh_A 125 IMSIYIRDPDGNLIEISQYV 144 (152)
T ss_dssp EEEEEEECTTCCEEEEEEC-
T ss_pred EEEEEEECCCCCEEEEEecc
Confidence 38889999999988766543
No 247
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=23.45 E-value=51 Score=19.00 Aligned_cols=15 Identities=27% Similarity=0.343 Sum_probs=12.2
Q ss_pred eEEEEECCCCCEEEE
Q psy11208 45 RGLFIIDPKGVLRQI 59 (116)
Q Consensus 45 RatFIID~dG~I~~~ 59 (116)
-..+++|.+|.|.+.
T Consensus 10 ~~i~~~d~~g~i~~~ 24 (126)
T 3mjq_A 10 DMILIINREGRLLYA 24 (126)
T ss_dssp SEEEEEETTSBEEEE
T ss_pred ceEEEEeCCCcEEEE
Confidence 357899999999874
No 248
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=22.44 E-value=1e+02 Score=18.87 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.3
Q ss_pred ceEEEEECCCCCEEEEEE
Q psy11208 44 LRGLFIIDPKGVLRQITV 61 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~ 61 (116)
.|..++.||+|.+..+..
T Consensus 101 ~~~~~~~DPdG~~iel~~ 118 (126)
T 1ecs_A 101 GTMAALVDPDGTLLRLIQ 118 (126)
T ss_dssp SEEEEEECTTSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEec
Confidence 488999999999887664
No 249
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=22.15 E-value=1.3e+02 Score=20.59 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=15.7
Q ss_pred EEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 47 LFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 47 tFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
||+|+.+|+...... . ....++ +++. |+.+
T Consensus 172 t~~v~~~~~~~~~~~---g-~~~~e~--~~~~-i~~~ 201 (208)
T 3kzq_A 172 SLVLQINDAYFPIEV---D-YLSTEP--TLKL-IRER 201 (208)
T ss_dssp EEEEEETTEEEEECC---C-SSCSHH--HHHH-HHHH
T ss_pred EEEEEECCEEEEeeC---C-CCCHHH--HHHH-HHHH
Confidence 677777776543221 1 234555 5555 5543
No 250
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=22.15 E-value=84 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.1
Q ss_pred ceEEEEECCCCCEEEE
Q psy11208 44 LRGLFIIDPKGVLRQI 59 (116)
Q Consensus 44 ~RatFIID~dG~I~~~ 59 (116)
.|..|+.||+|.+..+
T Consensus 109 ~~~~~~~DPdG~~iel 124 (126)
T 2p25_A 109 KKMTFFFDPDGLPLEL 124 (126)
T ss_dssp CEEEEEECTTCCEEEE
T ss_pred cEEEEEECCCCCEEEe
Confidence 4888999999988654
No 251
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=21.65 E-value=66 Score=19.99 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=12.3
Q ss_pred EEEEECCCCCEEEEE
Q psy11208 46 GLFIIDPKGVLRQIT 60 (116)
Q Consensus 46 atFIID~dG~I~~~~ 60 (116)
..+++|++|+|.|+-
T Consensus 11 ~i~v~d~~G~i~yvn 25 (111)
T 2vlg_A 11 IHAVLASNGRIIYIS 25 (111)
T ss_dssp EEEEECTTSBEEEEC
T ss_pred EEEEEcCCCeEEEEC
Confidence 478999999998754
No 252
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=21.49 E-value=1e+02 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.4
Q ss_pred CChHHHHHhCCCccCCCCcceEEEEECCCCC
Q psy11208 25 NRREKEDRIGVLIEPAGIPLRGLFIIDPKGV 55 (116)
Q Consensus 25 ~~~~vak~yGv~~~~~G~~~RatFIID~dG~ 55 (116)
+.. +++.||+. ..|+++++++ |.
T Consensus 80 ~~~-l~~~~~I~------~~Pt~~~~~~-g~ 102 (298)
T 3ed3_A 80 NKA-LCAKYDVN------GFPTLMVFRP-PK 102 (298)
T ss_dssp THH-HHHHTTCC------BSSEEEEEEC-CC
T ss_pred CHH-HHHhCCCC------ccceEEEEEC-Cc
Confidence 456 99999997 5789999975 54
No 253
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=21.42 E-value=85 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.3
Q ss_pred eEEEEECCCCCEEEEEE
Q psy11208 45 RGLFIIDPKGVLRQITV 61 (116)
Q Consensus 45 RatFIID~dG~I~~~~~ 61 (116)
|..++.||+|....+..
T Consensus 114 ~~~~~~DPdGn~iel~~ 130 (132)
T 3sk2_A 114 RTFLISDPDGHIIRVCP 130 (132)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 88999999999877653
No 254
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=21.32 E-value=86 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=18.0
Q ss_pred eEEE-EECCCCCEEEEEEccCCCCCC
Q psy11208 45 RGLF-IIDPKGVLRQITVNVPRTGKT 69 (116)
Q Consensus 45 RatF-IID~dG~I~~~~~~~~~~~r~ 69 (116)
+.+| ++|.+|.|.|..+.-....++
T Consensus 85 ~~VlAiVd~dg~ItYy~v~~~~~~~~ 110 (116)
T 2zyz_A 85 PVVLALVSNDGTVTYYYVRKIRLPRN 110 (116)
T ss_dssp CEEEEEECTTSCEEEEEEEECCCCCC
T ss_pred EEEEEEEcCCCCEEEEEEEEcccCcc
Confidence 3444 368999999999876666554
No 255
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=21.30 E-value=1.1e+02 Score=18.35 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=14.3
Q ss_pred eEEEEECCCCCEEEEEE
Q psy11208 45 RGLFIIDPKGVLRQITV 61 (116)
Q Consensus 45 RatFIID~dG~I~~~~~ 61 (116)
|..|+.||+|.+..+..
T Consensus 113 ~~~~~~DPdG~~iel~~ 129 (133)
T 3ey7_A 113 TSFYFRDPDGNLIEVST 129 (133)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 88999999999877653
No 256
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A
Probab=20.99 E-value=87 Score=19.12 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.6
Q ss_pred eEEEEECCCCCEEEEE
Q psy11208 45 RGLFIIDPKGVLRQIT 60 (116)
Q Consensus 45 RatFIID~dG~I~~~~ 60 (116)
|..++.||+|.+..+.
T Consensus 104 ~~~~~~DPdG~~iel~ 119 (122)
T 1qto_A 104 REFAVRDPAGNCVHFT 119 (122)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cEEEEECCCCCEEEEe
Confidence 8889999999987654
No 257
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=20.94 E-value=1e+02 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred ceEEEEECCCCCEEEEEEccC
Q psy11208 44 LRGLFIIDPKGVLRQITVNVP 64 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~~~ 64 (116)
..+.||+|.+|+++....+..
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~ 22 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLA 22 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSC
T ss_pred eEEEEEECCCCCEEEEEeCCC
Confidence 368999999999998877653
No 258
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A
Probab=20.80 E-value=90 Score=19.11 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.9
Q ss_pred eEEEEECCCCCEEEEE
Q psy11208 45 RGLFIIDPKGVLRQIT 60 (116)
Q Consensus 45 RatFIID~dG~I~~~~ 60 (116)
|..++.||+|.+..+.
T Consensus 104 ~~~~~~DPdG~~iel~ 119 (124)
T 1xrk_A 104 REFALRDPAGNCVHFV 119 (124)
T ss_dssp EEEEEECTTCCEEEEE
T ss_pred CEEEEECCCCCEEEEE
Confidence 8899999999987655
No 259
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=20.48 E-value=1.1e+02 Score=18.80 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.4
Q ss_pred ceEEEEECCCCCEEEEEEc
Q psy11208 44 LRGLFIIDPKGVLRQITVN 62 (116)
Q Consensus 44 ~RatFIID~dG~I~~~~~~ 62 (116)
.|+.|+.||+|.+..+...
T Consensus 110 ~~~~~~~DPdGn~iel~~~ 128 (135)
T 3rri_A 110 HETFFLIDPSNNLLEFKYY 128 (135)
T ss_dssp EEEEEEECTTCCEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEEE
Confidence 4788999999998876654
No 260
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=20.34 E-value=25 Score=29.51 Aligned_cols=58 Identities=7% Similarity=-0.030 Sum_probs=34.9
Q ss_pred ccceEEEE-eCCChHHHHHhCCCccCCCCcceEEEEECCCCCEEEEEEccCCCCCCccHHHHHHHHHhhh
Q psy11208 15 TVTAKVLS-SRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83 (116)
Q Consensus 15 ~l~fpLLS-D~~~~~vak~yGv~~~~~G~~~RatFIID~dG~I~~~~~~~~~~~r~~~e~~iL~~~l~~l 83 (116)
++.|-.+. |.+.. +++.||+. ..|+++++ ++|+++....+.....++.++ +.+. |+.+
T Consensus 707 ~~~~~~vd~~~~~~-~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~--l~~~-l~~~ 765 (780)
T 3apo_A 707 KVRAGKVDCQAYPQ-TCQKAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKT--IAAL-IYGK 765 (780)
T ss_dssp TCEEEEEETTTCHH-HHHHTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHH--HHHH-HHHH
T ss_pred CceEEEEECCCCHH-HHHhcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHH--HHHH-HHHH
Confidence 34444432 34456 99999997 56888888 788776544432101245566 6666 5554
Done!