RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11208
(116 letters)
>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional.
Length = 199
Score = 81.5 bits (201), Expect = 2e-20
Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 3 LRSLKKGGLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVN 62
L+ KKGGL GT+ +L+ + + GVL E G+ RGLFIIDPKG+LRQITVN
Sbjct: 89 LQERKKGGL--GTMAIPMLADKTKSIARS-YGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145
Query: 63 ---VPRTGKTLFGYFTIRSVISSFGLFSVCPANWKPDSPTIKPSPAESKEYFNKVN 115
V R + + + G VCPANWK PT+KP P +SKE F
Sbjct: 146 DMPVGRNVEEVLRLLEAFQFVEKHG--EVCPANWKKGDPTMKPDPNKSKEGFFSKA 199
>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 194
Score = 69.6 bits (171), Expect = 6e-16
Identities = 38/85 (44%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFT-IRSVISSFGLFS----V 88
GVL G+ LRG FIIDP GV+R I VN G+ I VI + + V
Sbjct: 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGR----NVDEILRVIDALQFVAKHGEV 169
Query: 89 CPANWKPDSPTIKPSPAESKEYFNK 113
CPANWKP TIKPSP + EY +
Sbjct: 170 CPANWKPGDKTIKPSP-DLGEYLKE 193
>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells
through its peroxidase activity by reducing hydrogen
peroxide, peroxynitrite, and organic hydroperoxides. The
functional unit of typical 2-cys PRX is a homodimer. A
unique intermolecular redox-active disulfide center is
utilized for its activity. Upon reaction with peroxides,
its peroxidatic cysteine is oxidized into a sulfenic
acid intermediate which is resolved by bonding with the
resolving cysteine from the other subunit of the
homodimer. This intermolecular disulfide bond is then
reduced by thioredoxin, tryparedoxin or AhpF. Typical
2-cys PRXs, like 1-cys PRXs, form decamers which are
stabilized by reduction of the active site cysteine.
Typical 2-cys PRX interacts through beta strands at one
edge of the monomer (B-type interface) to form the
functional homodimer, and uses an A-type interface
(similar to the dimeric interface in atypical 2-cys PRX
and PRX5) at the opposite end of the monomer to form the
stable decameric (pentamer of dimers) structure.
Length = 173
Score = 64.1 bits (157), Expect = 5e-14
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 13/70 (18%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSVISSFGLF---- 86
GVL E G+ LRG FIIDP+G++R ITVN V R+ T+R V+ +
Sbjct: 110 GVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDE-----TLR-VLDALQFVEEHG 163
Query: 87 SVCPANWKPD 96
VCPANWKP
Sbjct: 164 EVCPANWKPG 173
>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC,
alkylhydroperoxide reductase subunit C) is one subunit
of a two-subunit complex with subunit F(TIGR03140).
Usually these are found as an apparent operon. The gene
has been characterized in Bacteroides fragilis where it
is important in oxidative stress defense. This gene
contains two invariant cysteine residues, one near the
N-terminus and one near the C-terminus, each followed
immediately by a proline residue [Cellular processes,
Detoxification, Cellular processes, Adaptations to
atypical conditions].
Length = 187
Score = 53.6 bits (129), Expect = 6e-10
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSVISSFGLFS--- 87
GVLIE AG+ RG F+IDP+GV++ + ++ + R L +R + ++ + +
Sbjct: 109 GVLIEEAGLADRGTFVIDPEGVIQAVEIHDNGIGRDASEL-----LRKIKAAQYVAAHPG 163
Query: 88 -VCPANWKPDSPTIKPS 103
VCPA WK + T+KPS
Sbjct: 164 EVCPAKWKEGAETLKPS 180
>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional.
Length = 202
Score = 41.8 bits (98), Expect = 1e-05
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 38 EPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYF-TIRSVISSFGLFSVCPANWKPD 96
E +G +RG+FIIDP ++R + TG+ + +++ ++ PANW+P
Sbjct: 111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPG 170
Query: 97 SPTIKPSPAESKEYFNKVN 115
I P+P+ E ++
Sbjct: 171 QEGIVPAPSTLDEAEMRIK 189
>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family. This family contains
proteins related to alkyl hydroperoxide reductase (AhpC)
and thiol specific antioxidant (TSA).
Length = 124
Score = 39.9 bits (94), Expect = 3e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQI 59
GVL E G+ LR F+IDP G +R I
Sbjct: 99 GVLNEEEGLALRTTFVIDPDGKIRYI 124
>gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin.
This is the C-terminal domain of 1-Cys peroxiredoxin
(1-cysPrx), a member of the peroxiredoxin superfamily
which protect cells against membrane oxidation through
glutathione (GSH)-dependent reduction of phospholipid
hydroperoxides to corresponding alcohols. The C-terminal
domain is crucial for providing the extra cysteine
necessary for dimerisation of the whole molecule. Loss
of the enzyme's peroxidase activity is associated with
oxidation of the catalytic cysteine, upstream of this
domain; and glutathionylation, presumably through its
disruption of protein structure, facilitates access for
GSH, resulting in spontaneous reduction of the mixed
disulfide to the sulfhydryl and consequent activation of
the enzyme. The domain is associated with family
AhpC-TSA, pfam00578, which carries the catalytic
cysteine.
Length = 40
Score = 36.8 bits (86), Expect = 1e-04
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 88 VCPANWKPDSPTIKPSPAE----SKEYFNK 113
V PANWKP I P P K Y
Sbjct: 11 VTPANWKPGDKVIVPPPPTEEEAVKRYLEG 40
>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional.
Length = 200
Score = 39.3 bits (91), Expect = 1e-04
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 26 RREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVIS---S 82
+RE + G+ G+ LRG F+ID G++R VN G+ + + +
Sbjct: 107 KREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEE 166
Query: 83 FGLFSVCPANWKPDSPTIKPSPAESKEYFNK 113
G VCPA W+ + SP +Y +
Sbjct: 167 HG--DVCPAQWEKGKEGMNASPDGVAKYLAE 195
>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the
different classes of PRXs including many proteins
originally known as bacterioferritin comigratory
proteins (BCP), based on their electrophoretic mobility
before their function was identified. PRXs are
thiol-specific antioxidant (TSA) proteins also known as
TRX peroxidases and alkyl hydroperoxide reductase C22
(AhpC) proteins. They confer a protective antioxidant
role in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either TRX, glutathione,
trypanothione and AhpF. They are distinct from other
peroxidases in that they have no cofactors such as
metals or prosthetic groups. The first step of
catalysis, common to all PRXs, is the nucleophilic
attack by the catalytic cysteine (also known as the
peroxidatic cysteine) on the peroxide leading to
cleavage of the oxygen-oxygen bond and the formation of
a cysteine sulfenic acid intermediate. The second step
of the reaction, the resolution of the intermediate,
distinguishes the different types of PRXs. The presence
or absence of a second cysteine (the resolving cysteine)
classifies PRXs as either belonging to the 2-cys or
1-cys type. The resolving cysteine of 2-cys PRXs is
either on the same chain (atypical) or on the second
chain (typical) of a functional homodimer. Structural
and motif analysis of this growing family supports the
need for a new classification system. The peroxidase
activity of PRXs is regulated in vivo by irreversible
cysteine over-oxidation into a sulfinic acid,
phosphorylation and limited proteolysis.
Length = 140
Score = 38.3 bits (90), Expect = 2e-04
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 33 IGVLIEPA---GIPLRGLFIIDPKGVLRQITVNVPRTG 67
GVLIE + G+ R FIIDP G +R + V TG
Sbjct: 96 YGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTG 133
>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C;
Provisional.
Length = 187
Score = 38.8 bits (90), Expect = 2e-04
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 35 VLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKT----LFGYFTIRSVISSFGLFSVCP 90
+ E G+ R F++DP+G+++ I V G+ L + V S G VCP
Sbjct: 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG--EVCP 167
Query: 91 ANWKPDSPTIKPS 103
A WK T+ PS
Sbjct: 168 AKWKEGEATLAPS 180
>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like
subfamily; composed of proteins similar to Mycobacterium
tuberculosis AhpE. AhpE is described as a 1-cys PRX
because of the absence of a resolving cysteine. The
structure and sequence of AhpE, however, show greater
similarity to 2-cys PRXs than 1-cys PRXs. PRXs are
thiol-specific antioxidant (TSA) proteins that confer a
protective role in cells through their peroxidase
activity in which hydrogen peroxide, peroxynitrate, and
organic hydroperoxides are reduced and detoxified using
reducing equivalents derived from either thioredoxin,
glutathione, trypanothione and AhpF. The first step of
catalysis is the nucleophilic attack by the peroxidatic
cysteine on the peroxide leading to the formation of a
cysteine sulfenic acid intermediate. The absence of a
resolving cysteine suggests that functional AhpE is
regenerated by an external reductant. The solution
behavior and crystal structure of AhpE show that it
forms dimers and octamers.
Length = 149
Score = 33.4 bits (77), Expect = 0.008
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 27 REKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57
E GV E G+ R +F+ID G++R
Sbjct: 97 GEVAKAYGVFDEDLGVAERAVFVIDRDGIIR 127
>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily;
composed of PRXs containing only one conserved cysteine,
which serves as the peroxidatic cysteine. They are
homodimeric thiol-specific antioxidant (TSA) proteins
that confer a protective role in cells by reducing and
detoxifying hydrogen peroxide, peroxynitrite, and
organic hydroperoxides. As with all other PRXs, a
cysteine sulfenic acid intermediate is formed upon
reaction of 1-cys PRX with its substrates. Having no
resolving cysteine, the oxidized enzyme is resolved by
an external small-molecule or protein reductant such as
thioredoxin or glutaredoxin. Similar to typical 2-cys
PRX, 1-cys PRX forms a functional dimeric unit with a
B-type interface, as well as a decameric structure which
is stabilized in the reduced form of the enzyme. Other
oligomeric forms, tetramers and hexamers, have also been
reported. Mammalian 1-cys PRX is localized cellularly in
the cytosol and is expressed at high levels in brain,
eye, testes and lung. The seed-specific plant 1-cys PRXs
protect tissues from reactive oxygen species during
desiccation and are also called rehydrins.
Length = 203
Score = 32.9 bits (76), Expect = 0.018
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 27 REKEDRIGVLIEPAGIPL--RGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS------ 78
RE +G++ AG L R +FIIDP +R I + P T T R+
Sbjct: 98 REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI-LYYPAT--------TGRNFDEILR 148
Query: 79 VISSFGLFS----VCPANWKPDSPTIKPSPAESKE 109
V+ + L PANWKP I P +E
Sbjct: 149 VVDALQLTDKHKVATPANWKPGDDVIVPPSVSDEE 183
>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional.
Length = 261
Score = 31.1 bits (70), Expect = 0.10
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 36 LIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLF--------- 86
L+ G R ++D GV++ + V + RSV + LF
Sbjct: 180 LLRDEGFSHRASVLVDKAGVVKHVAV---------YDLGLGRSVDETLRLFDAVQFAEKT 230
Query: 87 -SVCPANWKPDSPTIKPSPAESKEY-FNKVN 115
+VCP NWK +KP K+Y N+ N
Sbjct: 231 GNVCPVNWKQGDQAMKPDSQSVKQYLSNRFN 261
>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional.
Length = 260
Score = 30.7 bits (70), Expect = 0.11
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 32 RIGVLIEPAGIPLRGLFI-IDPKGVLRQITVNV 63
R+ VL AGI G F I + R I +NV
Sbjct: 77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINV 109
>gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys
PRX subfamily; composed of PRXs containing peroxidatic
and resolving cysteines, similar to the homodimeric
thiol specific antioxidant (TSA) protein also known as
TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial
periplasmic peroxidase which differs from other PRXs in
that it shows substrate specificity toward alkyl
hydroperoxides over hydrogen peroxide. As with all other
PRXs, the peroxidatic cysteine (N-terminal) of Tpx is
oxidized into a sulfenic acid intermediate upon reaction
with peroxides. Tpx is able to resolve this intermediate
by forming an intramolecular disulfide bond with a
conserved C-terminal cysteine (the resolving cysteine),
which can then be reduced by thioredoxin. This differs
from the typical 2-cys PRX which resolves the oxidized
cysteine by forming an intermolecular disulfide bond
with the resolving cysteine from the other subunit of
the homodimer. Atypical 2-cys PRX homodimers have a
loop-based interface (A-type for alternate), in contrast
with the B-type interface of typical 2-cys and 1-cys
PRXs.
Length = 143
Score = 29.9 bits (68), Expect = 0.19
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57
EG LS GVLI+ G+ R +F+ID G +
Sbjct: 79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVI 123
>gnl|CDD|193534 cd05658, M18_DAP, M18 Peptidase Aspartyl aminopeptidase. Peptidase
M18 family, Aspartyl aminopeptidase (DAP; EC 3.4.11.21)
subfamily. DAP is widely distributed in bacteria and
eukaryotes, but only the mammalian aspartyl
aminopeptidase has been characterized to date. DAP
cleaves only unblocked N-terminal acidic amino-acid
residues. It is a cytosolic enzyme and is highly
conserved; for example, the human enzyme has 51%
identity to an aspartyl aminopeptidase-like protein in
Arabidopsis thaliana. The mammalian DAP is highly
selective for hydrolysis of N-terminal aspartate or
glutamate residues from peptides. Unlike glutamyl
aminopeptidase (M42), DAP does not cleave simple
aminoaryl-arylamide substrates. Although there is lack
of understanding of the function of this enzyme, it is
thought to act in concert with other aminopeptidases to
facilitate protein turnover because of their restricted
specificities for the N-terminal aspartic and glutamic
acid, which cannot be cleaved by any other
aminopeptidases. The mammalian aspartyl aminopeptidase
is possibly contributing to the catabolism of peptides,
including those produced by the proteasome. It may also
trim the N-terminus of peptides that are intended for
the MHC class I system. In humans, DAP has been
implicated in the the specific function of converting
angiotensin II to the vasoactive angiotensin III within
the brain.
Length = 424
Score = 30.1 bits (69), Expect = 0.20
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 21/60 (35%)
Query: 72 GYFTIR---SVISSFGLFSVCPANWKP-----------DSPT--IKPSPAESKEYFNKVN 115
Y+ R S+I+ F+V +KP DSP +KP+P + E + ++
Sbjct: 46 KYYVTRNGSSLIA----FTV-GEKYKPGNGFRIVGAHTDSPCLKLKPNPEITSEGYLQLG 100
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 29.4 bits (66), Expect = 0.34
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 9 GGLIEGTVTAKVLSSRNRR---------EKEDRI-GVLIEPAGI 42
GG I G V AK LS + R+ K DRI G L++P G+
Sbjct: 40 GGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGV 83
>gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter,
permease subunit. This protein family is the permease
subunit of binding protein-dependent ABC transporter
complex that strictly co-occurs with TIGR03769. TIGRFAMs
model TIGR03769 describes a protein domain that occurs
singly or as one of up to three repeats in proteins of a
number of Actinobacteria, including Propionibacterium
acnes KPA171202. The TIGR03769 domain occurs both in the
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
permease subunits outside the scope of this family
include manganese transporter MntB in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 270
Score = 29.0 bits (65), Expect = 0.55
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 5 SLKKGGLIEGTVTAKVLS--SRNRREKEDR-IGVLIEPAGIPLRGLFII 50
SL GG + G TA +++ S+NRR KED IG+ GL II
Sbjct: 67 SLLLGGAVAGVATAILIAVFSQNRRLKEDSIIGIFF--VAAFALGLVII 113
>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional.
Length = 215
Score = 27.9 bits (62), Expect = 1.1
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 32 RIGVL-IEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYF-TIRSVISSFGLFSVC 89
R+G++ E + +R +FI+D KG +R I G+ + IR++ V
Sbjct: 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVT 170
Query: 90 PANWKPDSPTI-----KPSPAESKE 109
PANW P++ I P+P K+
Sbjct: 171 PANW-PNNELIGDKVINPAPRTIKD 194
>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional.
Length = 222
Score = 27.6 bits (62), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 25 NRREKEDRIGVLIEPAG--IPLRGLFIIDPKGVLRQI 59
+R E ++G +I P +R +FIIDPKG++R I
Sbjct: 106 DRGEIAKKLG-MISPGKGTNTVRAVFIIDPKGIIRAI 141
>gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein.
Length = 1070
Score = 28.0 bits (62), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 FIIDPKGVLRQITVNVPRTGKTLF-GYFTI 76
F++ P+ +I N+ TGK LF FT+
Sbjct: 383 FVVTPQKAYEEIISNINLTGKELFLKTFTL 412
>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 157
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 34 GVLIEPAGI------PLRGLFIIDPKGVLRQITVNVP 64
GV E R F+IDP G +R + V
Sbjct: 104 GVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVK 140
>gnl|CDD|197870 smart00775, LNS2, This domain is found in Saccharomyces cerevisiae
protein SMP2, proteins with an N-terminal lipin domain
and phosphatidylinositol transfer proteins. SMP2 is
involved in plasmid maintenance and respiration. Lipin
proteins are involved in adipose tissue development and
insulin resistance.
Length = 157
Score = 26.1 bits (58), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 40 AGIPLRGLFIIDPKGVLRQ 58
GIP +F I+PKG + Q
Sbjct: 138 VGIPPSRIFTINPKGEVHQ 156
>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate
specificities [General function prediction only].
Length = 265
Score = 25.7 bits (57), Expect = 5.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 27 REKEDRIGVLIEPAGIPLRGLFI-IDPKGVLRQITVNV 63
+E+ I VL+ AG G F+ + I +N+
Sbjct: 79 KERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNI 116
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 25.7 bits (56), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 59 ITVNVPRTGKTLFGYFTIRSVI 80
+TV+ + K+L +FTIR VI
Sbjct: 317 VTVDSEKMSKSLGNFFTIRQVI 338
>gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical
proteins that show sequence similarity to PRXs. Members
of this group contain a CXXC motif, similar to TRX. The
second cysteine in the motif corresponds to the
peroxidatic cysteine of PRX, however, these proteins do
not contain the other two residues of the catalytic
triad of PRX. PRXs confer a protective antioxidant role
in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either thioredoxin,
glutathione, trypanothione and AhpF. TRXs alter the
redox state of target proteins by catalyzing the
reduction of their disulfide bonds via the CXXC motif
using reducing equivalents derived from either NADPH or
ferredoxins.
Length = 149
Score = 25.0 bits (55), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 38 EPAGIPLRGLFIIDPKGVLR 57
E G+ L G+F+I P G +
Sbjct: 124 EGDGLQLPGVFVIGPDGTIL 143
>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 25.4 bits (56), Expect = 9.1
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 60 TVNVPRTGKTLFG-----YFTIRSVISSFGLFSVCPANWKP--DSPTIKPSPAESKE--- 109
R +F I + S F F V N S + A +
Sbjct: 200 IALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQARALALLTLK 259
Query: 110 YFNK 113
Y+N+
Sbjct: 260 YYNE 263
>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional.
Length = 248
Score = 25.1 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 9 GGLIEGTVTAKVLSSRNRREKEDR 32
G +IEGTVTA +L+ N E R
Sbjct: 183 GDMIEGTVTATLLNRLNPGAIEAR 206
>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family
consists of several Tenuivirus PVC2 proteins from Rice
grassy stunt virus, Maize stripe virus and Rice hoja
blanca virus. The function of this family is unknown.
Length = 785
Score = 25.5 bits (56), Expect = 9.2
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 80 ISSFGLFSVCPA---NWK 94
+ F +FS CP NWK
Sbjct: 446 VEDFHVFSYCPFYHYNWK 463
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.412
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,012,893
Number of extensions: 540447
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 38
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)