RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11208
(116 letters)
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 101 bits (253), Expect = 3e-28
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 15/91 (16%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSV-----ISSFGL 85
GVL+E G+ LRGLFIIDP GV++ ++VN V R+ + T+R V + + G
Sbjct: 137 GVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEE-----TLRLVKAFQFVEAHG- 190
Query: 86 FSVCPANWKPDSPTIKPSPAESKEYFNKVNK 116
V PANW P+SPTIKP P S+EYF KVN+
Sbjct: 191 -EVSPANWTPESPTIKPHPTASREYFEKVNQ 220
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 100 bits (250), Expect = 1e-27
Identities = 43/90 (47%), Positives = 52/90 (57%), Gaps = 15/90 (16%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSV-----ISSFGL 85
GV +E +G LRGLFIID KG+LRQIT+N V R+ T+R V G
Sbjct: 129 GVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE-----TLRLVQAFQYTDKHG- 182
Query: 86 FSVCPANWKPDSPTIKPSPAESKEYFNKVN 115
VCPA WKP S TI P PA +YF+K+N
Sbjct: 183 -EVCPAGWKPGSETIIPDPAGKLKYFDKLN 211
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 99.6 bits (249), Expect = 1e-27
Identities = 44/95 (46%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
GVL E G+ RGLFIIDPK LRQITVN G R V +
Sbjct: 117 GVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVG---------RDVDEALRLVKAFQFVE 167
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKVNK 116
G VCPANWKP T+KP P +SKEYF V K
Sbjct: 168 KHG--EVCPANWKPGDKTMKPDPEKSKEYFGAVAK 200
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 99.6 bits (249), Expect = 1e-27
Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 15/90 (16%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSV-----ISSFGL 85
GVL GI RGLFIID KGVLRQITVN V R+ +R V G
Sbjct: 115 GVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDE-----ALRLVQAFQYTDEHG- 168
Query: 86 FSVCPANWKPDSPTIKPSPAESKEYFNKVN 115
VCPA WKP S TIKP+ +SKEYF+K N
Sbjct: 169 -EVCPAGWKPGSDTIKPNVDDSKEYFSKHN 197
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 99.6 bits (249), Expect = 1e-27
Identities = 43/91 (47%), Positives = 51/91 (56%), Gaps = 15/91 (16%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSV-----ISSFGL 85
GVLIE G+ LRGLFIIDPKGV+R IT+N V R +R V G
Sbjct: 133 GVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDE-----ALRLVEAFQWTDKNG- 186
Query: 86 FSVCPANWKPDSPTIKPSPAESKEYFNKVNK 116
+V P NW P + TIKP+ +SKEYF NK
Sbjct: 187 -TVLPCNWTPGAATIKPTVEDSKEYFEAANK 216
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 99.4 bits (248), Expect = 4e-27
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 15/90 (16%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVN---VPRTGKTLFGYFTIRSV-----ISSFGL 85
GV +E +G LRGLFIID KG+LRQIT+N V R+ T+R V G
Sbjct: 172 GVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE-----TLRLVQAFQYTDKHG- 225
Query: 86 FSVCPANWKPDSPTIKPSPAESKEYFNKVN 115
V PA WKP S TI P PA +YF+K+N
Sbjct: 226 -EVAPAGWKPGSETIIPDPAGKLKYFDKLN 254
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 98.2 bits (245), Expect = 9e-27
Identities = 41/93 (44%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
GV +E G LRGLFIID KGVLRQIT+N G RSV
Sbjct: 158 GVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVG---------RSVDETLRLVQAFQYTD 208
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKV 114
G VCPA WKP S TI P P+ +YF+K+
Sbjct: 209 KHG--EVCPAGWKPGSDTIIPDPSGKLKYFDKM 239
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 95.4 bits (238), Expect = 7e-26
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
VL + LRGLFIID G +R TVN G R+V +
Sbjct: 137 NVLYD-NSFALRGLFIIDKNGCVRHQTVNDLPIG---------RNVQEVLRTIDSIIHVD 186
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKVNK 116
+ G VCP NWK KP+ +Y N NK
Sbjct: 187 TSG--EVCPINWKKGQKAFKPTTESLIDYMNNANK 219
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 91.9 bits (229), Expect = 7e-25
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
VL + LR +ID +GV++ + VN G RSV
Sbjct: 112 DVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALG---------RSVDEILRLIDALQHHE 161
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKV 114
+G VCPANW+ ++KPS +Y + +
Sbjct: 162 KYG--DVCPANWQKGKESMKPSEEGVAKYLSNL 192
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 91.5 bits (228), Expect = 1e-24
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 24/95 (25%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
VL E I LRG F+ID +R +N G R+
Sbjct: 114 DVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLG---------RNADEMLRMVDALLHFE 163
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKVNK 116
G VCPA W+ +K + EY + +
Sbjct: 164 EHG--EVCPAGWRKGDKGMKATHQGVAEYLKENSI 196
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 91.6 bits (228), Expect = 2e-24
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
VL + + LR +ID G+++ + VN G RSV
Sbjct: 133 NVLFD-DSVSLRAFVLIDMNGIVQHLLVNNLAIG---------RSVDEILRIIDAIQHHE 182
Query: 82 SFGLFSVCPANWKPDSPTIKPSPAESKEYFNKV 114
+G VCPANW+ ++KPS +Y + +
Sbjct: 183 KYG--DVCPANWQKGKVSMKPSEEGVAQYLSTL 213
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 84.3 bits (209), Expect = 1e-21
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 23/83 (27%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
GV E G RGLFIIDP G+LRQIT+N G RSV +
Sbjct: 150 GVFDEEDGNAFRGLFIIDPNGILRQITINDKPVG---------RSVDETLRLLDAFQFVE 200
Query: 82 SFGLFSVCPANWKPDSPTIKPSP 104
G VCP NWK IK +
Sbjct: 201 KHG--EVCPVNWKRGQHGIKVNQ 221
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 81.8 bits (203), Expect = 6e-21
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 23/82 (28%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------------IS 81
GVL E +G+ RG+FIIDP G LRQI +N G R+V +
Sbjct: 117 GVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIG---------RNVEEVIRLVEALQFVE 167
Query: 82 SFGLFSVCPANWKPDSPTIKPS 103
G VCPANWK K
Sbjct: 168 EHG--EVCPANWKKGDAKKKEG 187
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 79.9 bits (198), Expect = 3e-20
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------ISSFGLFS 87
+ E G+ R F++DP+G+++ I V G R I + +
Sbjct: 108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIG---------RDASDLLRKIKAAQYVA 158
Query: 88 -----VCPANWKPDSPTIKPSP 104
VCPA WK T+ PS
Sbjct: 159 AHPGEVCPAKWKEGEATLAPSL 180
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 79.9 bits (198), Expect = 3e-20
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 20/82 (24%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------ISSFGLFS 87
VL E G+ RG FIIDP GV++ I +N G R + +
Sbjct: 109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIG---------RDASTLINKVKAAQYVR 159
Query: 88 -----VCPANWKPDSPTIKPSP 104
VCPA W+ T+KPS
Sbjct: 160 ENPGEVCPAKWEEGGETLKPSL 181
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 77.7 bits (192), Expect = 2e-19
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------ISSFGLFS 87
GVL G+ R FI+DP ++ ++ G R+V + +
Sbjct: 123 GVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVG---------RNVDEVLRVLDALQSDE 172
Query: 88 VCPANWKPDSPTIKPSPAESKE 109
+C +NW+ PT+
Sbjct: 173 LCASNWRKGDPTLDAGELLKAS 194
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 68.0 bits (167), Expect = 2e-15
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 28/102 (27%)
Query: 34 GVLIEPA------GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS------VIS 81
G++ + R +FII P L+ + TG R+ VI
Sbjct: 111 GMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTG---------RNFSEILRVID 161
Query: 82 SFGLFS----VCPANWKPDSPTIKP---SPAESKEYFNKVNK 116
S L + PA+W+P + S E+K F +
Sbjct: 162 SLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKTLFPNMEV 203
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 66.1 bits (162), Expect = 1e-14
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 28/99 (28%)
Query: 34 GVLIEPAG------IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS------VIS 81
G+L + R +F+ P L+ + TG R+ V+
Sbjct: 115 GMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG---------RNFDEILRVVI 165
Query: 82 SFGLFS----VCPANWKPDSPTIKP---SPAESKEYFNK 113
S L + P +WK + E+K+ F K
Sbjct: 166 SLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPK 204
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 65.5 bits (160), Expect = 3e-14
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 24/98 (24%)
Query: 34 GVLIEPAGI-PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSV------ISSFGLF 86
G+L + +RG+FI+D +GV+R + G R V + + L
Sbjct: 113 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG---------RLVDEILRIVKALKLG 163
Query: 87 S----VCPANWKPDS----PTIKPSPAESKEYFNKVNK 116
PA+W + I P P + ++
Sbjct: 164 DSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMES 201
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 63.4 bits (155), Expect = 1e-13
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 28/99 (28%)
Query: 34 GVLIEPAG------IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRS------VIS 81
++ E + R LF I P+ ++ + TG R+ V+
Sbjct: 112 KIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTG---------RNAHEILRVLK 162
Query: 82 SFGLFS----VCPANWKPDSPTIKP---SPAESKEYFNK 113
S L P NW E ++F
Sbjct: 163 SLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHFKN 201
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 53.8 bits (130), Expect = 2e-10
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTG 67
GV E AGI RG F++D G++R + P
Sbjct: 112 GVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEV 145
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57
EG A +LS +LI + R +F++D +R
Sbjct: 95 EGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIR 139
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 32.2 bits (74), Expect = 0.017
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57
G LS + GV++E + R +F++D +
Sbjct: 98 AGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVV 142
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 31.8 bits (73), Expect = 0.027
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLR 57
G + LS + GV I+ + R +F++D G +
Sbjct: 97 NGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVV 141
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 31.6 bits (71), Expect = 0.043
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 31 DRIGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFSVCP 90
DR+ +L+E G G I D KG+ ++ + + + + + + ++
Sbjct: 439 DRLDILVEAMGRMNFGKGIYDWKGITEKVELQSDKGVELVKDW-QVYTI--PVDYSFARD 495
Query: 91 ANWKPDSPTIKPSPAESKEYFN 112
+K + PA + FN
Sbjct: 496 KQYKQ-QENAENQPAYYRSTFN 516
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 30.7 bits (70), Expect = 0.061
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 34 GVLIEPAG----IPLRGLFIIDPKGVLRQITVNV 63
V E + R +FI+ P G + V
Sbjct: 107 NVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD 140
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 30.7 bits (70), Expect = 0.068
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 34 GVLIEPAGIP-----LRGLFIIDPKGVLRQITVNV 63
V E +P R +F+ID +G +R V+
Sbjct: 104 NVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSD 138
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 28.4 bits (64), Expect = 0.32
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIE---PAGIPLRGLFIIDPKGVLR 57
EG AK +S+ ++GV I+ AG+ R + ++D + +
Sbjct: 96 EGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVL 143
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 28.7 bits (64), Expect = 0.36
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 13 EGTVTAKVLSSRNRREKEDRIGVLIE---PAGIPLRGLFIIDPKGVLR--QITVNVPRTG 67
G +LS+ R+ R GVLI +G + + D V+ + N
Sbjct: 103 HGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANT---- 158
Query: 68 KTLFGYFTIRSVISSFGLFSVCPANWKPDSPTIKPSPAESK 108
+ F + I ++ A + + K
Sbjct: 159 RDFFDFDAIEKLLQEGEQ-QAMAAEREAAEARQEQDAEREK 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.69
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 46/128 (35%)
Query: 3 LRSLKKG--GLIEGTVTAKVLSSRNRREKEDRIGVLIEPAGIPLRGLFIIDPKGVLRQIT 60
LRS KG G +G VTA ++ + E + LF I GV
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA------ITVLFFI---GVRCYEA 313
Query: 61 VNVPRTGKTLFGYFTIRSVISSFGLFSVCPANWKPDSPTI---KPSP---------AESK 108
P T S+ P+ + DS PSP + +
Sbjct: 314 --YPNT--------------------SLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 109 EYFNKVNK 116
+Y NK N
Sbjct: 351 DYVNKTNS 358
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.2
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 19/112 (16%)
Query: 12 IEGTVTAKVLSSRNRR----EKEDRIGVLIEPAGIPLRGLFIID---PKGVLRQITVNVP 64
I+ T++ S N + + + L++ L ++ ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSC- 266
Query: 65 RTGKTLFGYFTIR--SVISSFGLFSVCPANWKPDSPTIKPSPAESKEYFNKV 114
K L T R V + + S T+ +P E K K
Sbjct: 267 ---KILL---TTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKY 310
Score = 27.1 bits (59), Expect = 1.7
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 29/115 (25%)
Query: 15 TVTAKVLSSRNRREK-EDRIGVLIEPAGIPLRGLFI-IDPKGVLRQITVNVPRTGKTLFG 72
VT + ++ + L L ++ P+ + R++ PR
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------- 328
Query: 73 YFTIRSVISSFG-LFSVCPANWKP------D--SPTIKPS-----PAESKEYFNK 113
+S A W D + I+ S PAE ++ F++
Sbjct: 329 ------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 49 IIDPKGVLRQITVNVPRTGKTLFGYFTI-RSVISSFGLFSVCPANWKPDSPTI-----KP 102
++ P GV+ ++ G ++ + + +S +G+F + D + KP
Sbjct: 144 LVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKP 203
Query: 103 SPAE 106
+ +
Sbjct: 204 AIED 207
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 26.4 bits (59), Expect = 2.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 43 PLRGLFIIDPKGVLRQI 59
P R F+ID KG++R I
Sbjct: 110 PARITFVIDKKGIIRHI 126
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone
demethylase, catalytic core, oxidoreductase; HET: DNA
AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Length = 373
Score = 26.6 bits (57), Expect = 2.6
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 88 VCPANWKPDSPTIKPSPAESK---EYFNKVNK 116
+ P+ P KP+ + + Y +NK
Sbjct: 5 IAPSEIVGGVPVFKPTYEQFEDFYAYCKAINK 36
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET:
EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB:
3d3h_A* 3nb7_A 3nb6_A
Length = 200
Score = 26.0 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 50 IDPKGVLRQITVNVPRTGKTLFGYFTI 76
IDP ++R VN R G+ + G TI
Sbjct: 50 IDPVAIVRAAIVNY-RAGRIVQGGSTI 75
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A*
3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A*
3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Length = 569
Score = 25.8 bits (57), Expect = 3.6
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 59 ITVNVPR-TGKTLFGYFTIRSVISSFGLFSV 88
I +P+ G L R F L S
Sbjct: 254 IYTILPKQAGGKLVSDPMARLAFLLFLLLST 284
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 25.2 bits (56), Expect = 5.4
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 29 KEDRIGVLIEPAGIPLRGLFIIDPK 53
+ + + L+ G + II+P
Sbjct: 57 QSEEVRNLLTKLGFADQDYTIINPN 81
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI,
joint CE structural genomics; 2.32A {Escherichia coli}
SCOP: c.77.1.5
Length = 355
Score = 25.2 bits (56), Expect = 6.0
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 29 KEDRIGVLIEPAGIPLRGLFIIDPK 53
+ G+ + GL +IDP
Sbjct: 59 NPFELRQFALSHGVAMDGLQVIDPH 83
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center
for structural genomics of infectious diseases, csgid;
HET: TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 25.2 bits (56), Expect = 6.1
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 29 KEDRIGVLIEPAGIPLRGLFIIDPK 53
E ++ L + + + + +I+P
Sbjct: 52 DETKVQSLAQKLNLDISNIELINPA 76
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 25.2 bits (56), Expect = 6.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 29 KEDRIGVLIEPAGIPLRGLFIIDPK 53
E+ I + + L G+ I DP
Sbjct: 55 NENEIQAKAKELNLTLGGVKIYDPH 79
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 25.2 bits (56), Expect = 6.6
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 33 IGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83
+GVL E AGIP GVL+ +T G L T+R + SF
Sbjct: 214 LGVLAEKAGIP---------AGVLQIVTGKAREIGAELTSNDTVRKL--SF 253
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 25.2 bits (56), Expect = 6.7
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 33 IGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83
+ L AG+P GV +T + G L +R + SF
Sbjct: 191 LAELAIRAGVP---------AGVFNVVTGSAGAVGNELTSNPLVRKL--SF 230
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 25.2 bits (56), Expect = 6.9
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 33 IGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83
+ L E AG+P KGVL + + G + +R + SF
Sbjct: 194 MAFLAERAGVP---------KGVLSVVIGDPKAIGTEITSNPIVRKL--SF 233
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 24.5 bits (54), Expect = 7.7
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 41 GIPLRGLFIIDPKGVLRQITVNV 63
GI R F++ P+G + Q V
Sbjct: 123 GI-ERSTFLLSPEGQVVQAWRKV 144
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 24.8 bits (55), Expect = 7.7
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 33 IGVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSF 83
+++ +P G++ + GK L + + + SF
Sbjct: 193 FFSVMDKLDLP---------DGMVNLVMGKASVIGKVLCEHKDVPML--SF 232
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L
1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W*
3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S*
1p6g_S 1p87_S 2aw7_S ...
Length = 92
Score = 24.0 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 4 RSLKKGGLIEGTVTAKVLSSRNRREKE 30
RSLKKG I+ + KV + +K+
Sbjct: 3 RSLKKGPFIDLHLLKKVEKAVESGDKK 29
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_S 3fih_S* 2wwl_S 3oar_S
3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S
4a2i_S 2gy9_S 2gyb_S
Length = 79
Score = 24.0 bits (53), Expect = 8.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 4 RSLKKGGLIEGTVTAKVLSSRNRREKE 30
RSLKKG I+ + KV + +K+
Sbjct: 1 RSLKKGPFIDLHLLKKVEKAVESGDKK 27
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 92
Score = 24.0 bits (53), Expect = 8.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 4 RSLKKGGLIEGTVTAKVLSSRNRREKE 30
RSLKK + + K+ + EKE
Sbjct: 3 RSLKKNPFVANHLLRKIEKLNKKAEKE 29
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel
domain, beta barrels, ribosome, 30S ribosomal subunit,
ribosome biogenesis; 2.30A {Thermus thermophilus} PDB:
1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S*
1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S*
1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Length = 93
Score = 24.0 bits (53), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 4 RSLKKGGLIEGTVTAKVLSSRNRREKE 30
RSLKKG ++ + KVL + EK
Sbjct: 3 RSLKKGVFVDDHLLEKVLELNAKGEKR 29
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 24.6 bits (54), Expect = 8.7
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 37 IEPAGIPLRGLFIIDPKGVLRQITV 61
+ AGI +ID +G + ++T
Sbjct: 110 LRDAGITR--NVLIDREGKIVKLTR 132
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 24.6 bits (54), Expect = 9.4
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 41 GIPLRGLFIIDPKGVLRQITVNV 63
GI R F+I P + + V
Sbjct: 139 GI-ERSTFLIGPTHRIVEAWRQV 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.412
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,762,436
Number of extensions: 98087
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 63
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)